Query 016833
Match_columns 382
No_of_seqs 360 out of 2360
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:13:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00037 DnaJ_C chaperone prot 100.0 1.1E-88 2.3E-93 682.9 32.8 364 4-382 20-421 (421)
2 COG0484 DnaJ DnaJ-class molecu 100.0 1.2E-80 2.6E-85 604.8 28.5 307 9-326 1-351 (371)
3 PRK14296 chaperone protein Dna 100.0 1.7E-74 3.6E-79 574.4 30.3 304 11-325 3-361 (372)
4 PRK14288 chaperone protein Dna 100.0 2.2E-72 4.7E-77 559.0 28.8 302 11-325 2-345 (369)
5 PRK14298 chaperone protein Dna 100.0 3.5E-72 7.7E-77 558.6 28.6 307 8-325 1-351 (377)
6 KOG0712 Molecular chaperone (D 100.0 3.6E-73 7.8E-78 545.5 19.7 302 9-323 1-337 (337)
7 PRK14276 chaperone protein Dna 100.0 9.3E-72 2E-76 556.7 28.7 305 11-325 3-356 (380)
8 PRK14277 chaperone protein Dna 100.0 1.2E-71 2.5E-76 557.1 29.1 310 8-325 1-365 (386)
9 PRK14280 chaperone protein Dna 100.0 1.4E-71 3E-76 554.7 29.1 305 11-325 3-353 (376)
10 PRK14286 chaperone protein Dna 100.0 1.4E-71 3.1E-76 553.7 28.9 305 11-325 3-357 (372)
11 PRK14287 chaperone protein Dna 100.0 1.9E-71 4.1E-76 552.6 29.1 305 11-325 3-348 (371)
12 PRK14278 chaperone protein Dna 100.0 2.4E-71 5.2E-76 553.1 29.2 307 11-325 2-350 (378)
13 PRK14297 chaperone protein Dna 100.0 7.6E-71 1.6E-75 550.4 29.2 308 11-326 3-359 (380)
14 PRK14282 chaperone protein Dna 100.0 5.7E-70 1.2E-74 542.2 29.6 308 11-326 3-364 (369)
15 PRK14285 chaperone protein Dna 100.0 5.5E-70 1.2E-74 541.0 28.1 304 11-327 2-355 (365)
16 PRK14281 chaperone protein Dna 100.0 1.2E-69 2.7E-74 544.0 29.0 308 11-325 2-372 (397)
17 PRK14279 chaperone protein Dna 100.0 1.7E-69 3.7E-74 541.9 28.9 300 11-325 8-378 (392)
18 PRK14284 chaperone protein Dna 100.0 3.3E-69 7.2E-74 540.2 27.7 303 12-324 1-365 (391)
19 TIGR02349 DnaJ_bact chaperone 100.0 5.1E-69 1.1E-73 533.3 28.4 305 13-325 1-353 (354)
20 PRK14301 chaperone protein Dna 100.0 7.1E-69 1.5E-73 534.5 28.3 302 11-325 3-350 (373)
21 PRK14295 chaperone protein Dna 100.0 1.5E-68 3.4E-73 534.4 28.7 304 5-325 2-372 (389)
22 PRK14294 chaperone protein Dna 100.0 2E-68 4.4E-73 530.5 27.7 304 10-325 2-350 (366)
23 PRK14290 chaperone protein Dna 100.0 1E-67 2.3E-72 525.2 29.0 308 12-327 3-358 (365)
24 PRK14293 chaperone protein Dna 100.0 2.9E-67 6.3E-72 523.6 28.0 309 11-325 2-354 (374)
25 PRK10767 chaperone protein Dna 100.0 3E-67 6.6E-72 523.4 28.1 300 11-325 3-348 (371)
26 PRK14300 chaperone protein Dna 100.0 3.7E-67 8E-72 522.3 28.5 302 12-324 3-351 (372)
27 PRK14283 chaperone protein Dna 100.0 8.7E-67 1.9E-71 520.9 28.1 303 8-324 1-355 (378)
28 PRK14291 chaperone protein Dna 100.0 2.4E-66 5.1E-71 518.1 29.2 305 11-326 2-371 (382)
29 PRK14289 chaperone protein Dna 100.0 3.9E-66 8.4E-71 517.7 28.6 311 8-325 1-364 (386)
30 PRK14292 chaperone protein Dna 100.0 9.4E-66 2E-70 512.7 29.3 303 13-324 3-347 (371)
31 PRK14299 chaperone protein Dna 100.0 9E-49 2E-53 378.4 21.3 229 11-324 3-285 (291)
32 PRK10266 curved DNA-binding pr 100.0 2.2E-47 4.8E-52 371.3 22.5 245 11-325 3-293 (306)
33 TIGR03835 termin_org_DnaJ term 100.0 2.5E-32 5.4E-37 282.1 18.2 158 82-306 655-812 (871)
34 KOG0713 Molecular chaperone (D 100.0 7.1E-34 1.5E-38 270.7 5.3 274 9-313 13-328 (336)
35 KOG0715 Molecular chaperone (D 99.9 1.5E-28 3.2E-33 236.3 7.4 207 13-247 44-288 (288)
36 PF01556 CTDII: DnaJ C termina 99.9 4.6E-22 9.9E-27 156.6 7.4 81 236-318 1-81 (81)
37 COG0484 DnaJ DnaJ-class molecu 99.6 8.5E-16 1.8E-20 150.7 10.3 208 12-239 51-345 (371)
38 KOG0714 Molecular chaperone (D 99.6 3.6E-15 7.8E-20 142.6 13.0 106 183-289 198-305 (306)
39 PRK10767 chaperone protein Dna 99.6 1.6E-15 3.4E-20 151.7 8.8 132 96-241 146-345 (371)
40 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.6 5.9E-15 1.3E-19 111.5 6.6 65 113-179 1-66 (66)
41 PRK14282 chaperone protein Dna 99.4 2.9E-13 6.3E-18 135.3 10.1 132 96-241 156-360 (369)
42 PRK14300 chaperone protein Dna 99.4 3.7E-13 8.1E-18 134.6 9.4 126 96-235 149-343 (372)
43 PRK14294 chaperone protein Dna 99.4 8E-13 1.7E-17 132.0 8.1 133 96-242 148-348 (366)
44 PRK14290 chaperone protein Dna 99.4 7.5E-13 1.6E-17 132.1 7.8 131 96-241 153-353 (365)
45 PRK14298 chaperone protein Dna 99.4 7.6E-13 1.6E-17 132.6 6.8 132 96-241 145-348 (377)
46 PRK14285 chaperone protein Dna 99.4 2E-12 4.4E-17 129.0 9.2 131 96-240 150-349 (365)
47 PRK14277 chaperone protein Dna 99.3 3.1E-12 6.7E-17 128.6 9.1 125 96-234 159-355 (386)
48 PRK14279 chaperone protein Dna 99.3 3.9E-12 8.5E-17 128.0 9.3 125 96-234 177-368 (392)
49 PRK14301 chaperone protein Dna 99.3 4.5E-12 9.7E-17 126.9 7.6 131 96-240 148-346 (373)
50 PRK14284 chaperone protein Dna 99.3 5.8E-12 1.3E-16 126.9 8.4 131 96-240 162-362 (391)
51 PRK14278 chaperone protein Dna 99.3 9.8E-12 2.1E-16 124.7 9.4 124 96-233 143-339 (378)
52 PRK14288 chaperone protein Dna 99.3 1.2E-11 2.6E-16 123.7 9.7 128 95-237 143-338 (369)
53 TIGR02349 DnaJ_bact chaperone 99.3 1.1E-11 2.4E-16 123.3 8.5 129 96-238 147-347 (354)
54 PRK14295 chaperone protein Dna 99.3 1.2E-11 2.7E-16 124.3 8.6 126 95-234 169-362 (389)
55 PRK14293 chaperone protein Dna 99.2 1.1E-11 2.5E-16 124.1 7.4 132 96-241 147-351 (374)
56 PRK14286 chaperone protein Dna 99.2 2.1E-11 4.5E-16 122.1 8.7 128 96-237 154-350 (372)
57 PRK14292 chaperone protein Dna 99.2 1.7E-11 3.7E-16 122.7 8.1 132 95-239 142-343 (371)
58 PRK14287 chaperone protein Dna 99.2 9.3E-12 2E-16 124.5 6.1 131 96-240 142-344 (371)
59 PRK14280 chaperone protein Dna 99.2 2.9E-11 6.3E-16 121.2 8.4 125 96-234 147-343 (376)
60 PRK14281 chaperone protein Dna 99.2 3.3E-11 7.1E-16 121.6 8.7 123 96-233 167-361 (397)
61 PRK14276 chaperone protein Dna 99.2 3.7E-11 8.1E-16 120.6 8.1 126 96-235 150-347 (380)
62 PRK14297 chaperone protein Dna 99.2 8E-11 1.7E-15 118.2 8.6 125 96-234 152-348 (380)
63 PRK14289 chaperone protein Dna 99.1 6.1E-11 1.3E-15 119.4 6.7 122 96-231 158-351 (386)
64 PRK14283 chaperone protein Dna 99.1 1.4E-10 3E-15 116.4 8.8 125 96-234 150-346 (378)
65 PTZ00037 DnaJ_C chaperone prot 99.1 1.9E-10 4.1E-15 116.6 9.7 119 96-227 154-347 (421)
66 PRK14296 chaperone protein Dna 99.1 1E-10 2.2E-15 117.1 7.2 126 95-234 152-351 (372)
67 PRK14291 chaperone protein Dna 99.1 2.4E-10 5.1E-15 114.9 9.5 118 96-228 160-346 (382)
68 PRK14299 chaperone protein Dna 98.9 6E-09 1.3E-13 101.1 8.9 86 230-325 125-218 (291)
69 PLN03165 chaperone protein dna 98.9 5.2E-09 1.1E-13 86.5 6.3 60 110-183 41-100 (111)
70 PRK10266 curved DNA-binding pr 98.7 5.6E-08 1.2E-12 95.0 8.7 75 232-310 115-202 (306)
71 PTZ00341 Ring-infected erythro 98.6 7.3E-09 1.6E-13 111.3 0.8 55 6-66 567-658 (1136)
72 PF01556 CTDII: DnaJ C termina 98.4 2.4E-07 5.2E-12 72.7 3.9 48 185-232 27-76 (81)
73 KOG0718 Molecular chaperone (D 98.4 5E-08 1.1E-12 97.2 -0.2 37 9-45 6-83 (546)
74 KOG0624 dsRNA-activated protei 98.4 7.4E-08 1.6E-12 93.2 0.2 38 6-44 388-466 (504)
75 KOG0712 Molecular chaperone (D 98.4 1E-06 2.2E-11 86.0 7.7 107 111-228 144-324 (337)
76 KOG0691 Molecular chaperone (D 98.3 6.2E-08 1.3E-12 93.3 -1.1 55 8-67 1-93 (296)
77 TIGR02642 phage_xxxx uncharact 98.3 8.4E-07 1.8E-11 80.0 5.8 51 153-204 99-149 (186)
78 COG2214 CbpA DnaJ-class molecu 98.2 2.8E-06 6.1E-11 77.3 7.0 48 189-237 180-227 (237)
79 KOG0716 Molecular chaperone (D 98.1 7.4E-07 1.6E-11 83.7 0.5 38 8-45 27-102 (279)
80 KOG0550 Molecular chaperone (D 97.8 6.1E-06 1.3E-10 81.8 1.0 55 7-64 368-461 (486)
81 COG1107 Archaea-specific RecJ- 97.8 1.2E-05 2.7E-10 82.4 2.9 13 315-327 296-308 (715)
82 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.7 1.3E-05 2.7E-10 60.5 1.4 53 98-163 4-66 (66)
83 KOG0719 Molecular chaperone (D 97.7 5.3E-06 1.1E-10 76.3 -0.9 32 10-41 12-83 (264)
84 KOG2813 Predicted molecular ch 97.6 7.5E-05 1.6E-09 71.6 4.6 60 110-190 198-277 (406)
85 KOG0717 Molecular chaperone (D 97.5 3.2E-05 6.9E-10 77.5 0.6 38 9-46 5-81 (508)
86 PHA03102 Small T antigen; Revi 97.4 2.6E-05 5.7E-10 68.3 -0.2 52 10-67 3-90 (153)
87 PF00226 DnaJ: DnaJ domain; I 97.4 1.7E-05 3.7E-10 58.9 -1.4 14 24-37 50-64 (64)
88 TIGR03835 termin_org_DnaJ term 97.4 0.00061 1.3E-08 72.7 9.3 93 228-325 650-763 (871)
89 COG1107 Archaea-specific RecJ- 97.0 0.00075 1.6E-08 69.6 4.7 28 241-271 200-230 (715)
90 PLN03165 chaperone protein dna 96.6 0.0014 3E-08 54.4 2.8 49 96-167 45-100 (111)
91 PRK01356 hscB co-chaperone Hsc 96.3 0.00081 1.7E-08 60.0 -0.5 15 24-38 56-71 (166)
92 PRK05014 hscB co-chaperone Hsc 96.3 0.00094 2E-08 59.9 -0.2 15 24-38 57-72 (171)
93 KOG2813 Predicted molecular ch 96.0 0.004 8.6E-08 60.0 2.3 76 95-180 169-256 (406)
94 PRK03578 hscB co-chaperone Hsc 95.9 0.0019 4.2E-08 58.2 -0.2 15 24-38 62-77 (176)
95 PRK00294 hscB co-chaperone Hsc 95.8 0.0024 5.3E-08 57.3 -0.1 15 24-38 60-75 (173)
96 TIGR02642 phage_xxxx uncharact 95.8 0.0064 1.4E-07 55.0 2.5 30 127-167 100-129 (186)
97 KOG0720 Molecular chaperone (D 95.5 0.0027 5.9E-08 64.0 -0.8 36 3-38 226-298 (490)
98 smart00271 DnaJ DnaJ molecular 94.4 0.012 2.7E-07 42.6 0.3 12 12-23 1-12 (60)
99 KOG0721 Molecular chaperone (D 93.6 0.017 3.6E-07 53.1 -0.5 35 9-43 96-168 (230)
100 PRK01773 hscB co-chaperone Hsc 93.5 0.019 4.1E-07 51.6 -0.4 14 24-37 58-72 (173)
101 cd06257 DnaJ DnaJ domain or J- 91.6 0.059 1.3E-06 38.2 0.2 11 13-23 1-11 (55)
102 COG5269 ZUO1 Ribosome-associat 91.2 0.043 9.4E-07 52.0 -1.0 16 24-39 97-113 (379)
103 KOG0722 Molecular chaperone (D 87.9 0.16 3.4E-06 48.0 0.0 29 11-39 32-97 (329)
104 cd03031 GRX_GRX_like Glutaredo 87.8 0.47 1E-05 41.5 2.9 22 112-138 101-122 (147)
105 COG5407 SEC63 Preprotein trans 85.0 0.23 4.9E-06 50.4 -0.6 20 24-43 152-172 (610)
106 KOG0715 Molecular chaperone (D 83.3 0.45 9.8E-06 46.2 0.7 64 94-171 166-235 (288)
107 TIGR00630 uvra excinuclease AB 82.6 0.98 2.1E-05 50.7 3.0 34 127-164 737-770 (924)
108 KOG2824 Glutaredoxin-related p 82.5 1 2.2E-05 43.0 2.7 51 111-176 230-280 (281)
109 PHA02624 large T antigen; Prov 80.4 0.38 8.3E-06 51.1 -1.1 29 8-36 7-71 (647)
110 PRK00349 uvrA excinuclease ABC 79.9 1.8 3.9E-05 48.8 3.9 34 127-164 739-772 (943)
111 KOG2824 Glutaredoxin-related p 79.1 2.4 5.1E-05 40.6 3.9 40 127-182 230-275 (281)
112 COG0178 UvrA Excinuclease ATPa 78.7 2.3 5E-05 46.7 4.1 34 127-164 731-764 (935)
113 PRK00635 excinuclease ABC subu 71.3 2.9 6.2E-05 50.1 2.7 25 297-324 1721-1746(1809)
114 smart00709 Zpr1 Duplicated dom 71.2 13 0.00029 32.9 6.4 21 185-205 80-100 (160)
115 PRK04023 DNA polymerase II lar 68.7 3.4 7.5E-05 46.1 2.5 68 93-183 609-677 (1121)
116 TIGR00310 ZPR1_znf ZPR1 zinc f 68.7 14 0.00031 33.7 6.1 35 128-162 2-39 (192)
117 TIGR00714 hscB Fe-S protein as 67.1 1.2 2.6E-05 39.3 -1.1 15 24-38 45-60 (157)
118 PRK14714 DNA polymerase II lar 66.8 6.3 0.00014 45.2 4.1 59 99-178 657-718 (1337)
119 TIGR00340 zpr1_rel ZPR1-relate 65.0 34 0.00073 30.4 7.6 27 252-284 72-98 (163)
120 KOG3192 Mitochondrial J-type c 65.0 1.4 3E-05 38.7 -1.1 14 24-37 64-78 (168)
121 cd03031 GRX_GRX_like Glutaredo 63.9 6.7 0.00015 34.2 3.0 39 127-181 100-145 (147)
122 TIGR00630 uvra excinuclease AB 60.2 4.4 9.5E-05 45.7 1.4 36 154-191 737-779 (924)
123 PF12991 DUF3875: Domain of un 53.4 16 0.00035 26.2 2.8 25 295-319 26-52 (54)
124 PRK00488 pheS phenylalanyl-tRN 52.0 12 0.00026 37.2 2.8 32 107-149 257-288 (339)
125 COG1198 PriA Primosomal protei 50.4 21 0.00046 39.2 4.6 61 99-178 419-484 (730)
126 TIGR00757 RNaseEG ribonuclease 49.0 11 0.00023 38.6 2.0 32 136-167 372-404 (414)
127 PF02814 UreE_N: UreE urease a 45.0 48 0.001 24.4 4.5 33 252-284 29-61 (65)
128 PRK14559 putative protein seri 43.0 20 0.00043 38.9 2.9 49 111-178 2-50 (645)
129 PRK00349 uvrA excinuclease ABC 41.7 12 0.00026 42.3 1.2 35 105-139 732-774 (943)
130 PF04246 RseC_MucC: Positive r 40.9 40 0.00086 28.6 4.0 20 185-204 42-61 (135)
131 PF03589 Antiterm: Antitermina 38.6 14 0.00031 29.8 0.8 12 154-165 33-44 (95)
132 PF06975 DUF1299: Protein of u 38.4 13 0.00028 25.2 0.4 8 24-31 12-20 (47)
133 TIGR03655 anti_R_Lar restricti 37.9 43 0.00093 23.7 3.1 13 127-139 2-14 (53)
134 PRK03564 formate dehydrogenase 37.5 33 0.00072 33.7 3.3 11 109-119 186-196 (309)
135 PRK00464 nrdR transcriptional 37.1 32 0.00069 30.3 2.8 34 128-161 2-36 (154)
136 PF14205 Cys_rich_KTR: Cystein 37.1 61 0.0013 23.4 3.7 11 172-182 31-41 (55)
137 PRK12380 hydrogenase nickel in 37.0 44 0.00095 27.7 3.5 39 98-136 57-96 (113)
138 PRK11712 ribonuclease G; Provi 36.4 18 0.0004 37.8 1.4 32 136-167 384-416 (489)
139 PF07092 DUF1356: Protein of u 36.4 19 0.00042 33.9 1.4 14 154-167 39-52 (238)
140 cd05792 S1_eIF1AD_like S1_eIF1 36.2 1.8E+02 0.0038 22.6 6.5 62 248-321 8-74 (78)
141 PRK00635 excinuclease ABC subu 35.6 13 0.00029 44.7 0.3 33 128-164 1609-1641(1809)
142 PRK05580 primosome assembly pr 35.4 54 0.0012 35.8 4.9 62 99-179 365-431 (679)
143 COG0178 UvrA Excinuclease ATPa 34.7 18 0.0004 39.9 1.1 36 104-139 723-766 (935)
144 COG5216 Uncharacterized conser 33.7 21 0.00046 26.1 1.0 14 89-102 30-43 (67)
145 PLN00208 translation initiatio 33.6 1.8E+02 0.004 25.3 6.9 60 249-322 42-106 (145)
146 PF03833 PolC_DP2: DNA polymer 32.9 14 0.00031 40.7 0.0 54 111-186 656-709 (900)
147 PF07092 DUF1356: Protein of u 32.1 19 0.0004 34.0 0.6 13 127-139 39-51 (238)
148 cd02639 R3H_RRM R3H domain of 31.0 62 0.0013 23.8 3.1 22 302-323 17-38 (60)
149 TIGR00523 eIF-1A eukaryotic/ar 30.6 2.5E+02 0.0054 22.8 6.9 61 249-322 29-94 (99)
150 TIGR00100 hypA hydrogenase nic 30.5 67 0.0014 26.7 3.6 27 110-136 70-96 (115)
151 PRK14051 negative regulator Gr 30.2 2.2E+02 0.0048 23.5 6.4 70 216-289 48-119 (123)
152 KOG0315 G-protein beta subunit 30.1 35 0.00077 32.6 2.1 31 240-270 19-50 (311)
153 PRK12336 translation initiatio 30.1 1.1E+02 0.0024 28.0 5.4 85 127-219 99-184 (201)
154 TIGR00595 priA primosomal prot 30.0 48 0.001 34.9 3.2 63 99-180 197-264 (505)
155 KOG0855 Alkyl hydroperoxide re 29.9 19 0.00042 32.2 0.3 22 12-33 122-158 (211)
156 cd04456 S1_IF1A_like S1_IF1A_l 29.9 2.6E+02 0.0057 21.5 6.7 61 248-321 9-74 (78)
157 PRK14873 primosome assembly pr 29.5 47 0.001 36.2 3.2 60 99-179 368-432 (665)
158 PF14353 CpXC: CpXC protein 29.3 27 0.00059 29.3 1.1 13 153-165 38-50 (128)
159 PF13719 zinc_ribbon_5: zinc-r 28.5 25 0.00054 23.0 0.6 9 128-136 4-12 (37)
160 COG1225 Bcp Peroxiredoxin [Pos 28.4 16 0.00034 32.3 -0.5 27 14-41 64-105 (157)
161 TIGR01562 FdhE formate dehydro 27.8 64 0.0014 31.7 3.5 10 110-119 184-193 (305)
162 cd05793 S1_IF1A S1_IF1A: Trans 27.7 2.8E+02 0.0061 21.3 6.6 62 247-322 8-74 (77)
163 KOG0005 Ubiquitin-like protein 27.7 26 0.00056 25.8 0.6 20 253-272 2-21 (70)
164 PF13248 zf-ribbon_3: zinc-rib 26.6 33 0.00072 20.5 0.8 22 153-176 2-23 (26)
165 PF08792 A2L_zn_ribbon: A2L zi 26.1 59 0.0013 20.9 2.0 12 127-138 4-15 (33)
166 PRK13263 ureE urease accessory 25.8 1.6E+02 0.0034 27.3 5.4 45 239-284 23-67 (206)
167 TIGR00595 priA primosomal prot 25.6 46 0.001 35.0 2.2 41 109-163 221-263 (505)
168 PF12387 Peptidase_C74: Pestiv 25.2 39 0.00085 30.2 1.3 24 111-137 163-186 (200)
169 COG2190 NagE Phosphotransferas 24.8 86 0.0019 27.7 3.4 46 254-306 63-111 (156)
170 PTZ00100 DnaJ chaperone protei 24.8 27 0.00058 29.3 0.2 14 10-23 63-76 (116)
171 PF13453 zf-TFIIB: Transcripti 24.4 51 0.0011 21.9 1.5 6 129-134 2-7 (41)
172 PF02426 MIase: Muconolactone 24.4 1.2E+02 0.0027 24.2 3.9 22 299-320 3-24 (91)
173 PTZ00329 eukaryotic translatio 24.1 3.4E+02 0.0073 24.0 6.9 58 251-322 44-106 (155)
174 PF03367 zf-ZPR1: ZPR1 zinc-fi 23.8 78 0.0017 28.0 3.0 34 127-160 2-37 (161)
175 PF01155 HypA: Hydrogenase exp 23.4 38 0.00082 28.0 0.9 41 97-137 56-97 (113)
176 cd04479 RPA3 RPA3: A subfamily 23.2 3.9E+02 0.0086 21.4 7.6 69 250-325 28-96 (101)
177 PF01155 HypA: Hydrogenase exp 23.0 54 0.0012 27.1 1.8 27 153-179 70-96 (113)
178 PF08273 Prim_Zn_Ribbon: Zinc- 22.8 55 0.0012 22.1 1.4 12 110-121 3-14 (40)
179 PRK00564 hypA hydrogenase nick 22.6 1.3E+02 0.0028 25.0 4.0 40 98-137 58-99 (117)
180 PRK05580 primosome assembly pr 22.6 63 0.0014 35.3 2.6 41 109-163 389-431 (679)
181 TIGR03221 muco_delta muconolac 22.2 1.4E+02 0.0031 23.8 3.9 22 300-321 3-24 (90)
182 PRK02935 hypothetical protein; 22.1 40 0.00087 27.7 0.8 24 153-176 70-93 (110)
183 PRK12380 hydrogenase nickel in 21.8 1E+02 0.0022 25.5 3.2 7 127-133 71-77 (113)
184 COG1198 PriA Primosomal protei 21.7 51 0.0011 36.3 1.7 39 110-162 444-484 (730)
185 PRK14113 urease accessory prot 21.3 2.1E+02 0.0046 25.1 5.2 43 240-283 18-60 (152)
186 PF08774 VRR_NUC: VRR-NUC doma 21.0 1.3E+02 0.0028 23.8 3.6 27 299-325 62-89 (100)
187 PF11023 DUF2614: Protein of u 20.9 38 0.00082 28.2 0.4 24 153-176 69-92 (114)
188 PF08271 TF_Zn_Ribbon: TFIIB z 20.7 56 0.0012 21.9 1.1 9 128-136 2-10 (43)
189 PF14354 Lar_restr_allev: Rest 20.7 99 0.0021 22.1 2.6 14 127-141 4-17 (61)
190 PRK12297 obgE GTPase CgtA; Rev 20.7 3.9E+02 0.0085 27.4 7.8 15 211-225 37-51 (424)
191 PF02963 EcoRI: Restriction en 20.4 55 0.0012 30.3 1.3 37 253-290 162-198 (257)
192 PRK09430 djlA Dna-J like membr 20.3 37 0.00081 32.6 0.3 15 9-23 197-211 (267)
193 PF10080 DUF2318: Predicted me 20.3 1.4E+02 0.0031 24.4 3.6 23 154-176 36-59 (102)
194 PRK04012 translation initiatio 20.1 4.8E+02 0.01 21.2 6.7 61 248-322 30-95 (100)
No 1
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=1.1e-88 Score=682.93 Aligned_cols=364 Identities=45% Similarity=0.874 Sum_probs=324.1
Q ss_pred CCCCCCCCcchhhhcCCCCC---------------------------------ce-eccCccccccccccchhhhhCCCC
Q 016833 4 RAPKKSDNTKYYEILGVSKK---------------------------------RF-VLSDPEKREIYDQYGEDALKEGMG 49 (382)
Q Consensus 4 ~~~~~~~~~~~Y~iLgv~~~---------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~ 49 (382)
|+++.|..+|||+||||+++ || |||||+||++||+||++++.++.
T Consensus 20 ~~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~- 98 (421)
T PTZ00037 20 RRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE- 98 (421)
T ss_pred cccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC-
Confidence 56677778999999999999 99 99999999999999998876421
Q ss_pred CCCCCCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCcccC
Q 016833 50 GGGGAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKC 129 (382)
Q Consensus 50 ~~~~~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C 129 (382)
++.+++|+|+.|||++ + +..+++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|...+...+|
T Consensus 99 ---~~~d~~d~f~~~Fggg----~--~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C 169 (421)
T PTZ00037 99 ---QPADASDLFDLIFGGG----R--KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDC 169 (421)
T ss_pred ---CCcchhhhHHHhhccc----c--ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccC
Confidence 1246789999999742 1 112346799999999999999999999999999999999999999877766899
Q ss_pred CCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCCCCCC
Q 016833 130 SGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADE 209 (382)
Q Consensus 130 ~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~geG~~ 209 (382)
+.|+|+|+++.++++|| |++|++.+|+.|+|+|+++..+++|+.|+|.+++.+.++|+|+|||||.+|++|+|+|+|++
T Consensus 170 ~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~ 248 (421)
T PTZ00037 170 KLCNGQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADE 248 (421)
T ss_pred CCCCCCCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCC
Confidence 99999999999999999 99999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcCCCCCC
Q 016833 210 APDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 289 (382)
Q Consensus 210 ~~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP~ 289 (382)
.+++.||||||+|++++|+.|+|+|+||+++++|||+|||+|+++.|+||||+.|.|++|||++++||++++|+|+|||.
T Consensus 249 ~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~ 328 (421)
T PTZ00037 249 KPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPT 328 (421)
T ss_pred CCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCccc
Confidence 88899999999999999999999999999999999999999999999999999899999999999999999999999998
Q ss_pred CCCCCCCCcEEEEEEEECC--CCCCHHHHHHHHHhCCCCCCCCCccCcccccceeeeecCChhHHHHHHhhhhccccccC
Q 016833 290 YQRPFMRGKLYIHFTVDFP--ESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQQAAQEAYDED 367 (382)
Q Consensus 290 ~~~~~~~GdL~i~~~V~~P--~~l~~~~~~~l~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (382)
.++++.+|||||+|+|.|| +.||++|+++|++|||.++.... +++++++|+++++++|+++...+ .++++|+||
T Consensus 329 ~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~ 404 (421)
T PTZ00037 329 YKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNPEEKK-DLEDTEIEVVTAQNVDPEEVKDR---DQKQQYQED 404 (421)
T ss_pred CCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccCCCCCCC-CCCcccceeEecccCCHHHhhhh---HHHHhhccc
Confidence 7655679999999999999 88999999999999997654443 56678899999999999775444 235566555
Q ss_pred CCC--CCCCCCCCCcCC
Q 016833 368 DDM--QGGAQRVQCAQQ 382 (382)
Q Consensus 368 ~~~--~~~~~~~~C~~q 382 (382)
+|+ +|++++||||||
T Consensus 405 ~~~~~~~~~~~v~c~~q 421 (421)
T PTZ00037 405 EDDEHHQEGERVACRQQ 421 (421)
T ss_pred cccccCCCCCccccCCC
Confidence 433 356789999998
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-80 Score=604.79 Aligned_cols=307 Identities=38% Similarity=0.722 Sum_probs=276.2
Q ss_pred CCCcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCC-CC
Q 016833 9 SDNTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEG-MG 49 (382)
Q Consensus 9 ~~~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g-~~ 49 (382)
++.+|||+||||+++ || |||||+||++||+||+++++++ ++
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 457899999999999 99 9999999999999999998632 22
Q ss_pred C-CCC-CC-CchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCC-
Q 016833 50 G-GGG-AH-DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA- 125 (382)
Q Consensus 50 ~-~~~-~~-~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~- 125 (382)
+ +++ +. ++.|||++||||+++ +++++++++++.|+.+.|+|||+|+|+|++++|.+++.+.|+.|+|+|++.++
T Consensus 81 g~g~~~fgg~~~DIF~~~FgGg~~--~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~ 158 (371)
T COG0484 81 GFGFGGFGGDFGDIFEDFFGGGGG--GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTD 158 (371)
T ss_pred CCCcCCCCCCHHHHHHHhhcCCCc--ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCC
Confidence 2 111 22 689999999974322 22334557899999999999999999999999999999999999999999996
Q ss_pred cccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCC
Q 016833 126 SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 205 (382)
Q Consensus 126 ~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~g 205 (382)
..+|++|+|+|.+...+++ ++++++++|+.|+|+|+++. ++|+.|+|.|++.+.++|+|+||+|+.+|++|+++|
T Consensus 159 ~~tC~tC~G~G~v~~~~~~---g~~~~~~~C~~C~G~G~~i~--~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g 233 (371)
T COG0484 159 PKTCPTCNGSGQVRTVQRT---GFFSFQQTCPTCNGTGKIIK--DPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSG 233 (371)
T ss_pred CCcCCCCCCcCeEEEEEee---eEEEEEEECCCCccceeECC--CCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEec
Confidence 4899999999999888887 45678999999999999995 999999999999999999999999999999999999
Q ss_pred CCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcC
Q 016833 206 EADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 284 (382)
Q Consensus 206 eG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g 284 (382)
+|++.+ ++++|||||+|.+++|+.|+|+|+|||++++|++.+|++|+++.|+||||+ +.|+|||| +++|++++|+|
T Consensus 234 ~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~G--tq~G~~~rl~g 310 (371)
T COG0484 234 EGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAG--TQTGEVFRLRG 310 (371)
T ss_pred CcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCC--CccCcEEEEcC
Confidence 999976 778899999999999999999999999999999999999999999999999 99999999 58899999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCCC
Q 016833 285 EGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPR 326 (382)
Q Consensus 285 ~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~~ 326 (382)
+|||..+ ...+|||||+++|++|++|+.+|+++|++|....
T Consensus 311 kG~p~~~-~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 311 KGMPKLR-SGGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL 351 (371)
T ss_pred CCccccC-CCCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 9999863 4567999999999999999999999999998744
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-74 Score=574.36 Aligned_cols=304 Identities=29% Similarity=0.559 Sum_probs=271.1
Q ss_pred CcchhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCC--CCC
Q 016833 11 NTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGM--GGG 51 (382)
Q Consensus 11 ~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~--~~~ 51 (382)
.+|||+||||+++ || |||||+||++||+||+++++++. +++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~ 82 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence 5799999999998 99 99999999999999998876321 111
Q ss_pred -C------------CCCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCC
Q 016833 52 -G------------GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKG 118 (382)
Q Consensus 52 -~------------~~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G 118 (382)
+ ++.++.|+|++|||++ + .+.++++++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus 83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg----~-~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G 157 (372)
T PRK14296 83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSN----K-SDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFG 157 (372)
T ss_pred CCccccccccccccccccchhhhhhhcCCC----c-cCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCC
Confidence 0 1123558888888742 1 11233567999999999999999999999999999999999999
Q ss_pred CCccCCCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCC
Q 016833 119 KGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQN 197 (382)
Q Consensus 119 ~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~ 197 (382)
+|.+.+.. .+|+.|+|+|+++..+++|| |++|++.+|+.|.|+|+++. +.|+.|+|.+++.+.++++|.||||+++
T Consensus 158 ~G~~~~~~~~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~ 234 (372)
T PRK14296 158 SGAESNSDIHICNNCHGTGEVLVQKNMGF-FQFQQSAKCNVCNGAGKIIK--NKCKNCKGKGKYLERKKIEVNIPKGIRP 234 (372)
T ss_pred CccCCCCCCccCCCCCCCceEEEEEeccc-eEEEEEecCCCcCCcceeec--ccccCCCCceEEEEEEEEEEEECCCCCC
Confidence 99988764 78999999999999999999 66688999999999999986 8899999999999999999999999999
Q ss_pred CCEEEeCCCCCCC-CCCCCccEEEEEEEecCCccccc-cccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCcccc
Q 016833 198 GQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRK-GDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVK 275 (382)
Q Consensus 198 g~~i~~~geG~~~-~g~~~GDl~v~i~~k~h~~F~R~-g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~ 275 (382)
|++|+|+|+|++. +++.+|||||+|++++|+.|+|+ |+||+++++|||+|||+|+++.|+||||+ +.|++|++ ++
T Consensus 235 G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~--t~ 311 (372)
T PRK14296 235 NQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKS--IN 311 (372)
T ss_pred CCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCc--cC
Confidence 9999999999986 57789999999999999999995 89999999999999999999999999998 89999987 79
Q ss_pred CCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 276 PDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 276 ~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
||++++|+|+|||...++..+|||||+|+|.||+.||++|+++|++|+..
T Consensus 312 ~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~ 361 (372)
T PRK14296 312 SNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQ 361 (372)
T ss_pred CCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999999999996655567899999999999999999999999999964
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-72 Score=558.96 Aligned_cols=302 Identities=27% Similarity=0.542 Sum_probs=263.3
Q ss_pred CcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCCCCCCC
Q 016833 11 NTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMGGGG 52 (382)
Q Consensus 11 ~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~~~~ 52 (382)
.+|||+||||+++ || |||||+||++||+||+++++++.++++
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~ 81 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQS 81 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCcc
Confidence 5899999999999 99 999999999999999988763211111
Q ss_pred CCCC----chhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCccc
Q 016833 53 GAHD----PFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMK 128 (382)
Q Consensus 53 ~~~~----~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 128 (382)
++.+ +.++|+.|||++ +.+++.++++++.|+.+.|.|||||+|+|+++++.++|.+.|+.|+|+|.......+
T Consensus 82 ~~~~~f~~~~~~F~~~fg~g---~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 158 (369)
T PRK14288 82 DFSDFFEDLGSFFEDAFGFG---ARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALET 158 (369)
T ss_pred ccccchhhHHHHHHhhcCCC---CcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcC
Confidence 1222 334666666532 111112234678999999999999999999999999999999999999998876689
Q ss_pred CCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCCCCC
Q 016833 129 CSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEAD 208 (382)
Q Consensus 129 C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~geG~ 208 (382)
|+.|+|+|++...+ |++ +++.+|+.|.|+|+++. +.|+.|+|.+++.+.++++|.||||+++|++|+|+|+|+
T Consensus 159 C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~ 231 (369)
T PRK14288 159 CKQCNGQGQVFMRQ----GFM-SFAQTCGACQGKGKIIK--TPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGN 231 (369)
T ss_pred CCCCCCCcEEEEEe----ceE-EEEEecCCCCCCceEcc--ccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCcc
Confidence 99999999876543 455 45679999999999986 889999999999999999999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcCCCCC
Q 016833 209 EAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMP 288 (382)
Q Consensus 209 ~~~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP 288 (382)
+.+++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+.+.|++|++ ++||++++|+|+|||
T Consensus 232 ~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~--~~~g~~~~i~g~G~p 309 (369)
T PRK14288 232 EYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRN--ARDRQTFAFRNEGVK 309 (369)
T ss_pred CCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCC--CCCCcEEEEcCCCCC
Confidence 988889999999999999999999999999999999999999999999999999889999997 799999999999999
Q ss_pred CCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 289 MYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 289 ~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
..+ +..+|||||+|+|.||++|+++|+++|++|++.
T Consensus 310 ~~~-~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~ 345 (369)
T PRK14288 310 HPE-SSYRGSLIVELQVIYPKSLNKEQQELLEKLHAS 345 (369)
T ss_pred CCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 764 345899999999999999999999999999974
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.5e-72 Score=558.60 Aligned_cols=307 Identities=31% Similarity=0.602 Sum_probs=272.2
Q ss_pred CCCCcchhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCCCC
Q 016833 8 KSDNTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMGG 50 (382)
Q Consensus 8 ~~~~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~~ 50 (382)
|...+|||+||||+++ || |||||+||++||+||++++++++++
T Consensus 1 ~~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~ 80 (377)
T PRK14298 1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSA 80 (377)
T ss_pred CCCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCc
Confidence 4556899999999999 99 9999999999999999887643111
Q ss_pred -----CCCCCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCC
Q 016833 51 -----GGGAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA 125 (382)
Q Consensus 51 -----~~~~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 125 (382)
++++.++.|+|++|||+++ +++.++++++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|.+.+.
T Consensus 81 ~~~~~~~~~~~~~d~f~~~Fgg~~----~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 156 (377)
T PRK14298 81 EDIFRGADFGGFGDIFEMFFGGGG----RRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGT 156 (377)
T ss_pred ccccccCCcCcchhhhHhhhcCCC----ccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCC
Confidence 1122346789999997421 1112335689999999999999999999999999999999999999999877
Q ss_pred c-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeC
Q 016833 126 S-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFP 204 (382)
Q Consensus 126 ~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~ 204 (382)
. .+|+.|+|+|+++..+++ |++++|++.+|+.|+|+|+++. +.|+.|+|++++.+.++++|.||||+++|++|+|+
T Consensus 157 ~~~~C~~C~G~G~~~~~~~~-~~g~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~ 233 (377)
T PRK14298 157 SPKRCPTCGGTGQVTTTRST-PLGQFVTTTTCSTCHGRGQVIE--SPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLS 233 (377)
T ss_pred CCCcCCCCCCccEEEEEEec-CceeEEEEEeCCCCCCCCcccC--CCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEe
Confidence 5 789999999999988885 4455689999999999999986 88999999999999999999999999999999999
Q ss_pred CCCCCC-CCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEc
Q 016833 205 GEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIN 283 (382)
Q Consensus 205 geG~~~-~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~ 283 (382)
|+|++. ++..+|||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+||||+ +.|+||++ +++|++++|+
T Consensus 234 g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~lri~ 310 (377)
T PRK14298 234 GEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPG--TQTHSVFRLK 310 (377)
T ss_pred cccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCC--cccCCEEEEC
Confidence 999985 5778999999999999999999999999999999999999999999999998 78999998 7999999999
Q ss_pred CCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 284 DEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 284 g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
|+|||..+ ...+|||||+|+|.||+.|+++++++|++++..
T Consensus 311 g~G~p~~~-~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~ 351 (377)
T PRK14298 311 DKGMPRLH-GHGKGDQLVKVIVKTPTKLTQEQKELLREFDEL 351 (377)
T ss_pred CCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999764 346899999999999999999999999999863
No 6
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-73 Score=545.48 Aligned_cols=302 Identities=59% Similarity=1.037 Sum_probs=280.6
Q ss_pred CCCcchhhhcCCCCC----------------------------------ce-eccCccccccccccchhhhhCCCCCCCC
Q 016833 9 SDNTKYYEILGVSKK----------------------------------RF-VLSDPEKREIYDQYGEDALKEGMGGGGG 53 (382)
Q Consensus 9 ~~~~~~Y~iLgv~~~----------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~~~~~ 53 (382)
+.++.||+||||+++ || |||||+||++||+||++++++|+++++
T Consensus 1 ~~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g- 79 (337)
T KOG0712|consen 1 VKNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGG- 79 (337)
T ss_pred CcccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCC-
Confidence 468899999999999 99 999999999999999999986543322
Q ss_pred CCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCcccCCCCC
Q 016833 54 AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQ 133 (382)
Q Consensus 54 ~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~ 133 (382)
++. |++||+.+ +.+ .+++.+++|++|.|+|||||+|.|.++++.++++.+|+.|+|+|.++++..+|+.|.
T Consensus 80 ~~~----f~~~F~~g---~~~--~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~ 150 (337)
T KOG0712|consen 80 FGG----FSQFFGFG---GNG--GRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCR 150 (337)
T ss_pred Ccc----HHHhccCC---CcC--ccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCC
Confidence 222 88888732 111 122334999999999999999999999999999999999999999999889999999
Q ss_pred cccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCCCCCCCCCC
Q 016833 134 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT 213 (382)
Q Consensus 134 G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~geG~~~~g~ 213 (382)
|+|..+.++++||||+|+++..|..|+|+|.++..+++|+.|.|.+++.+.+.++|+|++|++++++|++.|++++.++.
T Consensus 151 GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~ 230 (337)
T KOG0712|consen 151 GSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGT 230 (337)
T ss_pred CCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCC
Q 016833 214 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 293 (382)
Q Consensus 214 ~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP~~~~~ 293 (382)
.+||+++.|.+++|+.|.|+++||++..+|+|.|||||+.+.+.||||+.|.|.++||+||+||++++|+|+|||+++++
T Consensus 231 ~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~ 310 (337)
T KOG0712|consen 231 KPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP 310 (337)
T ss_pred cCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCcEEEEEEEECCCCCCHHHHHHHHHhC
Q 016833 294 FMRGKLYIHFTVDFPESLSPDQCKMLETVL 323 (382)
Q Consensus 294 ~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l 323 (382)
+|||||+|+|+||+ ++++++.+|+++|
T Consensus 311 --~g~lyi~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 311 --KGDLYIKFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred --CCcEEEEEEEEcCC-CChHHHHHHHhhC
Confidence 99999999999999 9999999999886
No 7
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.3e-72 Score=556.70 Aligned_cols=305 Identities=30% Similarity=0.578 Sum_probs=271.7
Q ss_pred CcchhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCCCC---
Q 016833 11 NTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMGG--- 50 (382)
Q Consensus 11 ~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~~--- 50 (382)
++|||+||||+++ || |||||+||++||+||++++++++++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 5799999999999 99 9999999999999999887643211
Q ss_pred C-C------CCCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccC
Q 016833 51 G-G------GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKS 123 (382)
Q Consensus 51 ~-~------~~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 123 (382)
+ + ++.++.|+|++|||+++ +.+.+.+++++.|+.+.|.|||||+|+|+++++.+.+.+.|+.|+|+|...
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~---~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~ 159 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGGG---ARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKP 159 (380)
T ss_pred CCCCccccccccchhhHHHHHhCccc---cccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCC
Confidence 1 0 12346789999997421 111123346799999999999999999999999999999999999999988
Q ss_pred CCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEE
Q 016833 124 GAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKIT 202 (382)
Q Consensus 124 ~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~ 202 (382)
+.. .+|+.|+|+|.+...++++|||+++ +.+|+.|+|+|+++. +.|+.|+|.+++.+.++++|.||+|+++|++|+
T Consensus 160 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~ 236 (380)
T PRK14276 160 GTSPVTCGKCHGSGVITVDTQTPLGMMRR-QVTCDVCHGTGKEIK--EPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIR 236 (380)
T ss_pred CCCCccCCCCCCeeEEEEEEecCCceEEE-EEECCCCCCCCcccc--CCCCCCCCceEEEEEEEEEEEeCCCccCCcEEE
Confidence 764 7899999999999999999999986 779999999999986 889999999999999999999999999999999
Q ss_pred eCCCCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEE
Q 016833 203 FPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKA 281 (382)
Q Consensus 203 ~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~ 281 (382)
|+|+|++.+ +..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|+||+| +++|++++
T Consensus 237 l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g--~~~g~~~~ 313 (380)
T PRK14276 237 LQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAG--TQTGKKFR 313 (380)
T ss_pred EeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCC--CCCCCEEE
Confidence 999999865 457799999999999999999999999999999999999999999999998 79999998 79999999
Q ss_pred EcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 282 INDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 282 i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|++++..
T Consensus 314 i~g~G~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~ 356 (380)
T PRK14276 314 LRGKGAPKLR-GGGNGDQHVTVNIVTPTKLNDAQKEALKAFAKA 356 (380)
T ss_pred ECCCCcCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999999764 335799999999999999999999999999953
No 8
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-71 Score=557.06 Aligned_cols=310 Identities=31% Similarity=0.620 Sum_probs=272.0
Q ss_pred CCCCcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCC-C
Q 016833 8 KSDNTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEG-M 48 (382)
Q Consensus 8 ~~~~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g-~ 48 (382)
|++.+|||+||||+++ || |||||+||++||+||+++++.+ .
T Consensus 1 ~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~ 80 (386)
T PRK14277 1 MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGF 80 (386)
T ss_pred CCCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccc
Confidence 5567899999999999 99 9999999999999999887532 1
Q ss_pred CC-----CC---C-----CCCchhhhhcccCCCCCCCCC-CCCccccCCceeEeccccccccccCcceeEEeeceeeeCC
Q 016833 49 GG-----GG---G-----AHDPFDIFQSFFGGSPFGGGS-SRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICT 114 (382)
Q Consensus 49 ~~-----~~---~-----~~~~~d~F~~~Fggg~f~g~~-~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~ 114 (382)
++ ++ + +.++.|+|++||++. |++++ ++.++++++.|+.+.|.|||||+|+|+++++.++|.+.|+
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~-fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~ 159 (386)
T PRK14277 81 GQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDF-FGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCD 159 (386)
T ss_pred ccCCcCCCCccccCccccccchhHHHHHhhccc-ccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCC
Confidence 00 00 0 123457888888742 22211 1122346799999999999999999999999999999999
Q ss_pred CCCCCCccCCCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEecc
Q 016833 115 KCKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 193 (382)
Q Consensus 115 ~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~ 193 (382)
.|+|+|...... .+|+.|+|+|+++..++++||++++. .+|+.|+|+|+++. +.|+.|+|++++.+.+.++|.|||
T Consensus 160 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~ 236 (386)
T PRK14277 160 VCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI-RTCDRCHGEGKIIT--DPCNKCGGTGRIRRRRKIKVNIPA 236 (386)
T ss_pred CCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEE-EECCCCCcceeecc--CCCCCCCCCcEEeeeeEEEEecCC
Confidence 999999987664 79999999999999999999998876 69999999999986 889999999999999999999999
Q ss_pred CCCCCCEEEeCCCCCCC-CCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCc
Q 016833 194 GMQNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGE 272 (382)
Q Consensus 194 G~~~g~~i~~~geG~~~-~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~ 272 (382)
|+++|++|+|+|+|++. .+..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|.||++
T Consensus 237 G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g- 314 (386)
T PRK14277 237 GIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG- 314 (386)
T ss_pred CccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCC-
Confidence 99999999999999984 4567899999999999999999999999999999999999999999999998 89999998
Q ss_pred cccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 273 VVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 273 vi~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
+++|++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 315 -~~~g~~~ri~g~G~p~~~~-~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~ 365 (386)
T PRK14277 315 -TQTGTKFRLRGKGIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEKL 365 (386)
T ss_pred -CCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 7899999999999997643 36899999999999999999999999999853
No 9
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-71 Score=554.72 Aligned_cols=305 Identities=31% Similarity=0.626 Sum_probs=270.9
Q ss_pred CcchhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCCCC-C-
Q 016833 11 NTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMGG-G- 51 (382)
Q Consensus 11 ~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~~-~- 51 (382)
.+|||+||||+++ || |||||+||++||+||++++++++++ +
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 4799999999999 99 9999999999999999887643211 1
Q ss_pred --CC---CCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCc
Q 016833 52 --GG---AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS 126 (382)
Q Consensus 52 --~~---~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 126 (382)
.+ ++++.|+|++|||+++ .++..+.++++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|...+..
T Consensus 83 ~~~~~~~~~~~~d~f~~~fgg~~---~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 159 (376)
T PRK14280 83 GGGDFGGGFGFEDIFSSFFGGGG---RRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTS 159 (376)
T ss_pred CCCCccccccchhhHHHHhCCcc---ccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCC
Confidence 01 1256799999997421 111123345799999999999999999999999999999999999999987764
Q ss_pred -ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCC
Q 016833 127 -MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 205 (382)
Q Consensus 127 -~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~g 205 (382)
.+|+.|+|+|++...++++|||++ ++.+|+.|+|+|+++. +.|+.|+|++++.+.++++|.||+|+++|++|+|+|
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G 236 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVV-NRQTCPHCNGTGQEIK--EKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSG 236 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEE-EEEEcCCCCCCCceec--CCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcc
Confidence 789999999999999999999987 4779999999999986 889999999999999999999999999999999999
Q ss_pred CCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcC
Q 016833 206 EADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 284 (382)
Q Consensus 206 eG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g 284 (382)
+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|
T Consensus 237 ~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~g~~~~i~g 313 (376)
T PRK14280 237 EGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAG--TQTGTQFRLKG 313 (376)
T ss_pred cccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCC--CCCCcEEEEcC
Confidence 999855 567899999999999999999999999999999999999999999999997 79999998 79999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 285 EGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 285 ~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
+|||..+ ...+|||||+|+|.||++||++|+++|++++..
T Consensus 314 ~G~p~~~-~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~ 353 (376)
T PRK14280 314 KGVPNVR-GYGQGDQYVVVRVVTPTKLTDRQKELLREFAEL 353 (376)
T ss_pred CCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999764 346899999999999999999999999999853
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-71 Score=553.66 Aligned_cols=305 Identities=31% Similarity=0.668 Sum_probs=266.5
Q ss_pred CcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCCCCC-C
Q 016833 11 NTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMGG-G 51 (382)
Q Consensus 11 ~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~~-~ 51 (382)
++|||+||||+++ || |||||+||++||+||+++++.+.++ +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 4799999999999 99 9999999999999999887632111 1
Q ss_pred -CC-------CCCchhhhhcccCCCCCCC-CCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCcc
Q 016833 52 -GG-------AHDPFDIFQSFFGGSPFGG-GSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSK 122 (382)
Q Consensus 52 -~~-------~~~~~d~F~~~Fggg~f~g-~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~ 122 (382)
++ +.++.|+|++|||+++.++ .+.+..++.++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|.+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~ 162 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGAS 162 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcC
Confidence 11 1246689999998532110 01112234679999999999999999999999999999999999999998
Q ss_pred CCCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEE
Q 016833 123 SGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKI 201 (382)
Q Consensus 123 ~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i 201 (382)
.+.. .+|+.|+|+|+++..+ ||++ ++++|+.|+|+|+++. ++|+.|+|++++.+.+.++|+||||+++|++|
T Consensus 163 ~~~~~~~C~~C~G~G~v~~~~----G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 235 (372)
T PRK14286 163 KGSSPTTCPDCGGSGQIRRTQ----GFFS-VATTCPTCRGKGTVIS--NPCKTCGGQGLQEKRRTINIKIPPGVETGSRL 235 (372)
T ss_pred CCCCCccCCCCcCeEEEEEEe----ceEE-EEEeCCCCCceeeEec--ccCCCCCCCcEEecceEEEEEECCCCCCCCEE
Confidence 7764 7899999999876543 5664 7889999999999986 88999999999999999999999999999999
Q ss_pred EeCCCCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEE
Q 016833 202 TFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFK 280 (382)
Q Consensus 202 ~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~ 280 (382)
+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+.|.|++|++ +++|+++
T Consensus 236 ~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g--~~~g~~~ 313 (372)
T PRK14286 236 KVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TESGQVF 313 (372)
T ss_pred EECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCc--cCCCcEE
Confidence 9999999866 456799999999999999999999999999999999999999999999999899999998 7999999
Q ss_pred EEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 281 AINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 281 ~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
+|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 314 ri~G~G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 357 (372)
T PRK14286 314 RLKGHGMPYLG-AYGKGDQHVIVKIEIPKKITRRQRELIEEFARE 357 (372)
T ss_pred EECCCCCCCCC-CCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999764 346899999999999999999999999999964
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-71 Score=552.62 Aligned_cols=305 Identities=28% Similarity=0.586 Sum_probs=271.7
Q ss_pred CcchhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCCCC-C-
Q 016833 11 NTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMGG-G- 51 (382)
Q Consensus 11 ~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~~-~- 51 (382)
.+|||+||||+++ || |||||+||++||+||++++++++++ +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA 82 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence 5799999999999 99 9999999999999999887643211 1
Q ss_pred CCCCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCc-ccCC
Q 016833 52 GGAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCS 130 (382)
Q Consensus 52 ~~~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~ 130 (382)
+++.++.|+|++|||+++ +.+..++++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|...+.. .+|+
T Consensus 83 ~~f~~~~d~f~~~fgg~~---~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~ 159 (371)
T PRK14287 83 GDFGGFSDIFDMFFGGGG---GRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCS 159 (371)
T ss_pred ccccchHHHHHhhhcccc---CCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccC
Confidence 122346799999998521 111122345799999999999999999999999999999999999999987764 7899
Q ss_pred CCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCCCCCCC
Q 016833 131 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA 210 (382)
Q Consensus 131 ~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~geG~~~ 210 (382)
.|+|+|++...++++|||+++ +.+|+.|.|+|+++. +.|..|+|++++.+.++++|.||||+++|++|+|+|+|++.
T Consensus 160 ~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~ 236 (371)
T PRK14287 160 HCGGSGQLNVEQNTPFGRVVN-RRVCHHCEGTGKIIK--QKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAG 236 (371)
T ss_pred CCCCEEEEEEEEecCCceEEE-EEeCCCCCCCCcccc--ccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCC
Confidence 999999999999999999876 779999999999986 88999999999999999999999999999999999999986
Q ss_pred C-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcCCCCCC
Q 016833 211 P-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 289 (382)
Q Consensus 211 ~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP~ 289 (382)
+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+|||| +++|++++|+|+|||.
T Consensus 237 ~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~ 313 (371)
T PRK14287 237 VNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAG--TQTGTSFRLRGKGVPN 313 (371)
T ss_pred CCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCC--ccCCcEEEEcCCCccC
Confidence 4 568899999999999999999999999999999999999999999999998 89999998 7999999999999997
Q ss_pred CCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 290 YQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 290 ~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
.++ ..+|||||+|+|.||+.|+++|+++|++++..
T Consensus 314 ~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~ 348 (371)
T PRK14287 314 VHG-RGQGDQHVQVRVVTPKNLTEKEKELMREFAGM 348 (371)
T ss_pred CCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 643 35899999999999999999999999999953
No 12
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.4e-71 Score=553.11 Aligned_cols=307 Identities=29% Similarity=0.598 Sum_probs=270.0
Q ss_pred CcchhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCC-CCC-
Q 016833 11 NTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGM-GGG- 51 (382)
Q Consensus 11 ~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~-~~~- 51 (382)
.+|||+||||+++ || |||||+||++||+||+++..++. +++
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~ 81 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF 81 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence 3799999999998 99 99999999999999986433211 111
Q ss_pred -CCCCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCc-ccC
Q 016833 52 -GGAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKC 129 (382)
Q Consensus 52 -~~~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C 129 (382)
+++.++.|+|++|||+++ ++.....+++++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|.+.+.. .+|
T Consensus 82 ~~~f~~~~d~f~~ffgg~g--~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C 159 (378)
T PRK14278 82 GGGFGGLGDVFEAFFGGGA--ASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTC 159 (378)
T ss_pred CcCcCchhHHHHHHhCCCC--CCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceec
Confidence 112346789999998521 1111112346799999999999999999999999999999999999999988764 789
Q ss_pred CCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCCCCCC
Q 016833 130 SGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADE 209 (382)
Q Consensus 130 ~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~geG~~ 209 (382)
+.|+|+|+++..++.++|++++ +.+|+.|+|+|+++. +.|+.|+|++++.+.++++|.||||+++|++|+|+|+|++
T Consensus 160 ~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~ 236 (378)
T PRK14278 160 DTCGGRGEVQTVQRSFLGQVMT-SRPCPTCRGVGEVIP--DPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEV 236 (378)
T ss_pred CCccCceEEEEEEeccceeEEE-EEECCCCCccceeeC--CCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCC
Confidence 9999999999988899998875 569999999999986 8899999999999999999999999999999999999999
Q ss_pred CC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcCCCCC
Q 016833 210 AP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMP 288 (382)
Q Consensus 210 ~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP 288 (382)
.+ +..+|||||+|++++|+.|+|+|+||+++++|+|.+||+|+++.|+|||++.+.|+||++ +++|++++|+|+|||
T Consensus 237 ~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g--~~~g~~lrl~g~G~p 314 (378)
T PRK14278 237 GPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--TQPGSVITLRGRGMP 314 (378)
T ss_pred CCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCC--cCCCcEEEECCCCCC
Confidence 77 457799999999999999999999999999999999999999999999877899999998 799999999999999
Q ss_pred CCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 289 MYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 289 ~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
..+ ...+|||||+|+|.||++||++|+++|+++++.
T Consensus 315 ~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~ 350 (378)
T PRK14278 315 HLR-SGGRGDLHAHVEVVVPTRLDHEDIELLRELKAL 350 (378)
T ss_pred CCC-CCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 764 346899999999999999999999999999964
No 13
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.6e-71 Score=550.40 Aligned_cols=308 Identities=31% Similarity=0.635 Sum_probs=271.6
Q ss_pred CcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCCCC---
Q 016833 11 NTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMG--- 49 (382)
Q Consensus 11 ~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~--- 49 (382)
.+|||+||||+++ || |||||+||++||+||+++++++.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 4799999999999 99 999999999999999988753211
Q ss_pred CCCCC------CCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccC
Q 016833 50 GGGGA------HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKS 123 (382)
Q Consensus 50 ~~~~~------~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 123 (382)
++.++ .++.|+|++|||++ +++.+++..+++++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~-~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 161 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGG-FGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKP 161 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccC-ccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccC
Confidence 11011 24569999999852 211111223346799999999999999999999999999999999999999987
Q ss_pred CCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEE
Q 016833 124 GAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKIT 202 (382)
Q Consensus 124 ~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~ 202 (382)
+.. .+|+.|+|+|+++..++++||+++ ++.+|+.|+|+|+++. +.|..|+|++++.+.++++|.||||+++|++|+
T Consensus 162 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~ 238 (380)
T PRK14297 162 GTSPKTCDKCGGTGQIRVQRNTPLGSFV-STTTCDKCGGSGKVIE--DPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIP 238 (380)
T ss_pred CCcCccCCCccCeEEEEEEEEcCCceeE-EEEeCCCCCCCceEcC--CCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEE
Confidence 764 789999999999999999999875 4889999999999986 889999999999999999999999999999999
Q ss_pred eCCCCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEE
Q 016833 203 FPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKA 281 (382)
Q Consensus 203 ~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~ 281 (382)
|+|+|++.+ +..+|||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+||||+ +.|+||++ +++|++++
T Consensus 239 l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g--~~~g~~~r 315 (380)
T PRK14297 239 LRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAG--TQPGTVFR 315 (380)
T ss_pred EecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCC--cCCCCEEE
Confidence 999999854 567899999999999999999999999999999999999999999999997 89999998 79999999
Q ss_pred EcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCCC
Q 016833 282 INDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPR 326 (382)
Q Consensus 282 i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~~ 326 (382)
|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|+++++..
T Consensus 316 i~g~G~p~~~-~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 359 (380)
T PRK14297 316 LKGKGVPRVN-STGRGNQYVTVIVDIPKKLNSKQKEALTMFMEAS 359 (380)
T ss_pred EcCCCcCCCC-CCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 9999999763 3468999999999999999999999999999743
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.7e-70 Score=542.20 Aligned_cols=308 Identities=30% Similarity=0.593 Sum_probs=269.9
Q ss_pred CcchhhhcCCCCC--------------------------------------ce-eccCccccccccccchhhhhCCC---
Q 016833 11 NTKYYEILGVSKK--------------------------------------RF-VLSDPEKREIYDQYGEDALKEGM--- 48 (382)
Q Consensus 11 ~~~~Y~iLgv~~~--------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~--- 48 (382)
.+|||+||||+++ || |||||+||++||+||++++..+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~ 82 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET 82 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence 5799999999999 99 99999999999999988764211
Q ss_pred CCCCCC-C----Cc-----hhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCC
Q 016833 49 GGGGGA-H----DP-----FDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKG 118 (382)
Q Consensus 49 ~~~~~~-~----~~-----~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G 118 (382)
++++++ . ++ .|+|++|||+++ ++.++..+++++.|+.+.|.|||+|+|+|++++++++|.+.|+.|+|
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~--~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G 160 (369)
T PRK14282 83 ESGGGFFEDIFKDFENIFNRDIFDIFFGERR--TQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGG 160 (369)
T ss_pred CCCCcccccccccccccccchhhhHhhcccC--CcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCc
Confidence 111111 1 11 278888887421 11111233467999999999999999999999999999999999999
Q ss_pred CCccCCCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCC
Q 016833 119 KGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQN 197 (382)
Q Consensus 119 ~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~ 197 (382)
+|+..+.. .+|+.|+|+|+++..++++|||+++ +.+|+.|+|+|+++. +.|+.|+|++++.+.++|+|+||||+.+
T Consensus 161 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~ 237 (369)
T PRK14282 161 TGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVS-ERTCERCGGTGKIPG--EYCHECGGSGRIRRRVRTTVKIPAGVED 237 (369)
T ss_pred cCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEE-EEECCCCCCcceeCC--CCCCCCCCceeEEEEEEEEEEeCCCCCC
Confidence 99988764 7999999999999999999999875 679999999999976 8899999999999999999999999999
Q ss_pred CCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccC
Q 016833 198 GQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKP 276 (382)
Q Consensus 198 g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~ 276 (382)
|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+.|.|+|||| +++
T Consensus 238 G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g--~~~ 315 (369)
T PRK14282 238 GTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG--TQP 315 (369)
T ss_pred CCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC--cCC
Confidence 99999999999854 678899999999999999999999999999999999999999999999999899999998 799
Q ss_pred CcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCCC
Q 016833 277 DQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPR 326 (382)
Q Consensus 277 g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~~ 326 (382)
|++++|+|+|||..+ ...+|||||+|+|.+|+.|+++++++|++|+...
T Consensus 316 g~~iri~GkG~p~~~-~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~ 364 (369)
T PRK14282 316 ETVFRLKGKGLPNMR-YGRRGDLIVNVHVEIPKRLSREERKLLKELAKKR 364 (369)
T ss_pred CCEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999753 3458999999999999999999999999998643
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.5e-70 Score=541.04 Aligned_cols=304 Identities=34% Similarity=0.657 Sum_probs=267.9
Q ss_pred CcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCCCC--C
Q 016833 11 NTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMG--G 50 (382)
Q Consensus 11 ~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~--~ 50 (382)
.+|||+||||+++ || |||||+||+.||+||+++++++++ +
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 4799999999999 99 999999999999999988764311 1
Q ss_pred ---CCC-----CCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCcc
Q 016833 51 ---GGG-----AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSK 122 (382)
Q Consensus 51 ---~~~-----~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~ 122 (382)
+.. +.++.|+|++|||++. ++.+.++++++.|+.++|.|||||+|+|++++++++|.+.|+.|+|+|..
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~---~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~ 158 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNR---GQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSE 158 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCc---CCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccC
Confidence 101 1246689999997421 11111234679999999999999999999999999999999999999998
Q ss_pred CCCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEE
Q 016833 123 SGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKI 201 (382)
Q Consensus 123 ~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i 201 (382)
.+.. .+|+.|+|+|+++. ++||+ |++.+|+.|.|+|+++. +.|..|+|++++.+.++++|+||||+++|++|
T Consensus 159 ~~~~~~~C~~C~G~G~~~~----~~G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 231 (365)
T PRK14285 159 KGTSPSICNMCNGSGRVMQ----GGGFF-RVTTTCPKCYGNGKIIS--NPCKSCKGKGSLKKKETIELKIPAGIDDNQQI 231 (365)
T ss_pred CCCCCccCCCccCceeEEe----cCcee-EEeeecCCCCCcccccC--CCCCCCCCCCEEeccEEEEEEECCCCCCCCEE
Confidence 8764 78999999998763 57787 77999999999999986 88999999999999999999999999999999
Q ss_pred EeCCCCCCCCC-CCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEE
Q 016833 202 TFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFK 280 (382)
Q Consensus 202 ~~~geG~~~~g-~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~ 280 (382)
+|+|+|++.++ ..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+.|.|+||+| +++|+++
T Consensus 232 ~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g--~~~g~~i 309 (365)
T PRK14285 232 KMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKG--TENDEQI 309 (365)
T ss_pred EEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCC--cCCCcEE
Confidence 99999999764 56899999999999999999999999999999999999999999999999999999998 7999999
Q ss_pred EEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCCCC
Q 016833 281 AINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRT 327 (382)
Q Consensus 281 ~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~~~ 327 (382)
+|+|+|||..+. ..+|||||+|+|.+|+.|+++++++|++++...+
T Consensus 310 rl~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~ 355 (365)
T PRK14285 310 IIKNEGMPILHT-EKFGNLILIIKIKTPKNLNSNAIKLLENLSKELK 355 (365)
T ss_pred EECCCCccCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 999999997643 3579999999999999999999999999986544
No 16
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-69 Score=543.98 Aligned_cols=308 Identities=32% Similarity=0.638 Sum_probs=268.7
Q ss_pred CcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCCC---C
Q 016833 11 NTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEGM---G 49 (382)
Q Consensus 11 ~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~---~ 49 (382)
.+|||+||||+++ || |||||+||++||+||+++++++. +
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 4799999999999 99 99999999999999998876321 1
Q ss_pred -CC--CCCCCchhhh---hcccCCCC-C------------CCCCCCC--ccccCCceeEeccccccccccCcceeEEeec
Q 016833 50 -GG--GGAHDPFDIF---QSFFGGSP-F------------GGGSSRG--RRQRRGEDVIHPLKVSLEDLYNGTSKKLSLS 108 (382)
Q Consensus 50 -~~--~~~~~~~d~F---~~~Fggg~-f------------~g~~~~~--~~~~kg~di~~~l~vtlee~~~G~~~~i~~~ 108 (382)
++ +++.++.|+| ++|||+++ + +++..+. ..+.++.|+.+.|.|||||+|+|+++++.++
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~ 161 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK 161 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence 11 1122455665 47887421 1 1110111 1234789999999999999999999999999
Q ss_pred eeeeCCCCCCCCccCCCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEE
Q 016833 109 RNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLE 188 (382)
Q Consensus 109 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~ 188 (382)
+.+.|+.|+|+|...+...+|+.|+|+|+++..+++++|++++ +.+|+.|.|+|+++. ++|+.|+|++++.+.++++
T Consensus 162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~ 238 (397)
T PRK14281 162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN-ITACPTCGGEGRVVK--DRCPACYGEGIKQGEVTVK 238 (397)
T ss_pred eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE-EEecCCCcceeeeeC--CCCCCCCCCccEecceEEE
Confidence 9999999999999887668999999999999999999998876 679999999999986 8899999999999999999
Q ss_pred EEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEE
Q 016833 189 VIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIK 267 (382)
Q Consensus 189 V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ 267 (382)
|+||||+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|+
T Consensus 239 V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ 317 (397)
T PRK14281 239 VTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLT 317 (397)
T ss_pred EecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEE
Confidence 99999999999999999999876 568999999999999999999999999999999999999999999999997 8999
Q ss_pred eCCCccccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 268 SQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 268 ~p~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
||++ +++|++++|+|+|||..+ ...+|||||+|+|.||+.||++|+++|++|+..
T Consensus 318 ip~g--~~~G~~~ri~g~G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 372 (397)
T PRK14281 318 IPAG--TQPETMLRIPGKGIGHLR-GSGRGDQYVRVNVFVPKEVSHQDKELLKELKKS 372 (397)
T ss_pred eCCc--cCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 9998 799999999999999764 346899999999999999999999999999963
No 17
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-69 Score=541.85 Aligned_cols=300 Identities=31% Similarity=0.601 Sum_probs=256.7
Q ss_pred CcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCCC----
Q 016833 11 NTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEGM---- 48 (382)
Q Consensus 11 ~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~---- 48 (382)
.+|||+||||+++ || |||||+||++||+||+++..++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~ 87 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR 87 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence 5899999999998 99 99999999999999975322110
Q ss_pred --C-CC-CC--------CCCc---------------hhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcc
Q 016833 49 --G-GG-GG--------AHDP---------------FDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGT 101 (382)
Q Consensus 49 --~-~~-~~--------~~~~---------------~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~ 101 (382)
+ ++ ++ ..++ .|+|+.|||++ +++.+..+++++.|+.+.|.|||||+|+|+
T Consensus 88 ~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~---~~~~~~~~~~~g~di~~~l~ltLee~~~G~ 164 (392)
T PRK14279 88 FDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRG---GGSARPSRPRRGNDLETETTLDFVEAAKGV 164 (392)
T ss_pred ccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCC---CcccccCCCCCCCCeEEEEEEEHHHHhCCe
Confidence 0 00 00 1122 24555555421 111122335679999999999999999999
Q ss_pred eeEEeeceeeeCCCCCCCCccCCCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceE
Q 016833 102 SKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKV 180 (382)
Q Consensus 102 ~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~ 180 (382)
++++.+++.+.|+.|+|+|...+.. .+|+.|+|+|+++..+ | ++ +++.+|+.|+|+|+++. +.|..|+|+++
T Consensus 165 ~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~-~~~~~C~~C~G~G~~i~--~~C~~C~G~g~ 237 (392)
T PRK14279 165 TMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--G--AF-GFSEPCTDCRGTGSIIE--DPCEECKGTGV 237 (392)
T ss_pred EEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe--c--ce-EEEEecCCCCceeEEeC--CcCCCCCCCeE
Confidence 9999999999999999999988764 7899999999887543 3 44 46799999999999986 88999999999
Q ss_pred EEeceEEEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEec
Q 016833 181 IQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHL 259 (382)
Q Consensus 181 ~~~~~~l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tl 259 (382)
+.+.++++|.||||+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||
T Consensus 238 v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~l 317 (392)
T PRK14279 238 TTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTL 317 (392)
T ss_pred EEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcC
Confidence 9999999999999999999999999999866 567799999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 260 DGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 260 dG~~l~i~~p~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
||+ +.|+||+| +++|++++|+|+|||.. ...+|||||+|+|.||++|+++|+++|++|+..
T Consensus 318 dg~-i~v~Ip~g--~~~g~~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~ 378 (392)
T PRK14279 318 DGP-VGVKVPAG--TADGRILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEA 378 (392)
T ss_pred Cce-EEEEECCC--CCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 998 89999998 79999999999999963 346899999999999999999999999999963
No 18
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-69 Score=540.20 Aligned_cols=303 Identities=31% Similarity=0.599 Sum_probs=261.2
Q ss_pred cchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCCCC--CC
Q 016833 12 TKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMG--GG 51 (382)
Q Consensus 12 ~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~--~~ 51 (382)
+|||+||||+++ || |||||+||++||+||++++.++.+ ++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 489999999999 99 999999999999999987642210 11
Q ss_pred CCC------------------CCchhhhhcccCCCCCC-CCCCCCccccCCceeEeccccccccccCcceeEEeeceeee
Q 016833 52 GGA------------------HDPFDIFQSFFGGSPFG-GGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVI 112 (382)
Q Consensus 52 ~~~------------------~~~~d~F~~~Fggg~f~-g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~ 112 (382)
+++ ..+.|+|++|||+++++ +++....+++++.|+.+.|.|||||+|+|+++++.+++.+.
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~ 160 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKS 160 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeecc
Confidence 110 01147888888742110 11111223467899999999999999999999999999999
Q ss_pred CCCCCCCCccCCCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEe
Q 016833 113 CTKCKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIV 191 (382)
Q Consensus 113 C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~I 191 (382)
|+.|+|+|++.+.. .+|+.|+|+|.++..+ |+++ ++.+|+.|+|+|+++. +.|+.|+|++++.+.++|+|+|
T Consensus 161 C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~I 233 (391)
T PRK14284 161 CDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFS-MASTCPECGGEGRVIT--DPCSVCRGQGRIKDKRSVHVHI 233 (391)
T ss_pred CCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEE-EEEECCCCCCCCcccC--CcCCCCCCcceecceEEEEEEE
Confidence 99999999988764 7899999999877543 4554 6789999999999986 8899999999999999999999
Q ss_pred ccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecC-CcEEEEEeC
Q 016833 192 EKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLD-GRQLLIKSQ 269 (382)
Q Consensus 192 p~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tld-G~~l~i~~p 269 (382)
|||+++|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||| |+.+.|+||
T Consensus 234 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip 313 (391)
T PRK14284 234 PAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIP 313 (391)
T ss_pred CCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEEC
Confidence 99999999999999999976 5788999999999999999999999999999999999999999999999 677999999
Q ss_pred CCccccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCC
Q 016833 270 PGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 324 (382)
Q Consensus 270 ~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp 324 (382)
++ +++|++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+.
T Consensus 314 ~g--~~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~ 365 (391)
T PRK14284 314 EG--IQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFAA 365 (391)
T ss_pred Cc--cCCCeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 98 8999999999999997643 4689999999999999999999999999985
No 19
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=5.1e-69 Score=533.31 Aligned_cols=305 Identities=35% Similarity=0.676 Sum_probs=270.2
Q ss_pred chhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCCCC-CC--
Q 016833 13 KYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMGG-GG-- 52 (382)
Q Consensus 13 ~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~~-~~-- 52 (382)
|||+||||+++ || ||||+.||+.||+||+++++++.++ ++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 79999999988 99 9999999999999999887642111 11
Q ss_pred ------CCCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCc
Q 016833 53 ------GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS 126 (382)
Q Consensus 53 ------~~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 126 (382)
++.++.|+|++|||++. +++..+...++++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|......
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~~-g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 159 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGGG-GSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTD 159 (354)
T ss_pred CCccccCcCchhhhHHHHhccCc-ccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCC
Confidence 12346689999998421 11111123456799999999999999999999999999999999999999987764
Q ss_pred -ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCC
Q 016833 127 -MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 205 (382)
Q Consensus 127 -~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~g 205 (382)
.+|+.|+|+|.++..+++||||+|+ +.+|+.|.|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 236 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQ-QQTCPTCGGEGKIIK--EPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSG 236 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEE-EEecCCCCCcceecC--CCCCCCCCCcEecccceEEEEECCCCCCCCEEEEec
Confidence 7899999999999999999999987 679999999999986 789999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcC
Q 016833 206 EADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 284 (382)
Q Consensus 206 eG~~~-~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g 284 (382)
+|++. ++..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+|||| .+.|.+|++ +++|++++|+|
T Consensus 237 ~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~g 313 (354)
T TIGR02349 237 KGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAG--TQSGTVFRLKG 313 (354)
T ss_pred CccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCc--ccCCcEEEECC
Confidence 99984 466789999999999999999999999999999999999999999999999 589999998 79999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 285 EGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 285 ~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
+|||..+. ..+|||||+|+|.||+.|+++|+++|++||..
T Consensus 314 ~G~p~~~~-~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 314 KGVPRLRG-NGRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred CCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99997643 36899999999999999999999999999853
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.1e-69 Score=534.49 Aligned_cols=302 Identities=31% Similarity=0.594 Sum_probs=263.1
Q ss_pred CcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCCCC-CC
Q 016833 11 NTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMG-GG 51 (382)
Q Consensus 11 ~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~-~~ 51 (382)
.+|||+||||+++ || |||||+||+.||+||+++++++.+ ++
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g 82 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGG 82 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCC
Confidence 5799999999998 99 999999999999999988764211 11
Q ss_pred C-C----CCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCc
Q 016833 52 G-G----AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS 126 (382)
Q Consensus 52 ~-~----~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 126 (382)
. + +.++.|+|++|||+++. ++.+..++.++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|......
T Consensus 83 ~~~~~~~~~~f~d~f~~~fg~g~~--~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~ 160 (373)
T PRK14301 83 FSSAEDIFSHFSDIFGDLFGFSGG--GSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTS 160 (373)
T ss_pred cccccccccchHHHHHHHhhccCc--ccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCC
Confidence 1 1 12345788888863211 111223456899999999999999999999999999999999999999987764
Q ss_pred -ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCC
Q 016833 127 -MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 205 (382)
Q Consensus 127 -~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~g 205 (382)
.+|+.|+|+|.+... . ||+ +++.+|+.|+|+|+++. +.|+.|+|++++.+.++++|+||+|+++|++|+|+|
T Consensus 161 ~~~C~~C~G~G~v~~~--~--G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 233 (373)
T PRK14301 161 PETCRHCGGSGQVRQS--Q--GFF-QIAVPCPVCRGEGRVIT--HPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRG 233 (373)
T ss_pred CcccCCccCeeEEEEE--e--eeE-EEEEeCCCCCceeeecC--CCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEec
Confidence 789999999987643 3 455 45999999999999986 889999999999999999999999999999999999
Q ss_pred CCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcC
Q 016833 206 EADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 284 (382)
Q Consensus 206 eG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g 284 (382)
+|++.+ +..+|||||+|++++|+.|+|+|+||+++++|+|.+||+|+++.|+||||+ +.|+||++ +++|++++|+|
T Consensus 234 ~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g--~~~g~~~ri~g 310 (373)
T PRK14301 234 EGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKG--TQSGEVFRLRG 310 (373)
T ss_pred cccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCC--cCCCcEEEEcC
Confidence 999865 577899999999999999999999999999999999999999999999998 89999998 79999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 285 EGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 285 ~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
+|||..+ ...+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 311 ~G~p~~~-~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~ 350 (373)
T PRK14301 311 KGLPYLG-SSQKGDLLVEVSVVTPTKLTKRQEELLREFEAL 350 (373)
T ss_pred CCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999764 346899999999999999999999999999853
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-68 Score=534.45 Aligned_cols=304 Identities=31% Similarity=0.604 Sum_probs=262.9
Q ss_pred CCCCCCCcchhhhcCCCCC-------------------------------------ce-eccCccccccccc----cchh
Q 016833 5 APKKSDNTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQ----YGED 42 (382)
Q Consensus 5 ~~~~~~~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~----~G~~ 42 (382)
+.+|++.+|||+||||+++ || |||||+||++||+ ||++
T Consensus 2 ~~~~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~ 81 (389)
T PRK14295 2 STKDYIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNG 81 (389)
T ss_pred CchhccccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccc
Confidence 4567778999999999999 99 9999999999999 9998
Q ss_pred hhhCCCC-C-CCCC-CC--------------------chhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccC
Q 016833 43 ALKEGMG-G-GGGA-HD--------------------PFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYN 99 (382)
Q Consensus 43 g~~~g~~-~-~~~~-~~--------------------~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~ 99 (382)
+++++.+ + ++++ ++ +.|+|+.|||+ ++ +.++++++.|+.+.|.|||||+|+
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~-----~~-~~~~~~~g~di~~~l~lsLee~~~ 155 (389)
T PRK14295 82 GFRPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNR-----GG-RRTQPRRGADVESEVTLSFTEAID 155 (389)
T ss_pred ccccCCCCCCCCCCCcccccccccccccccccccccchhhhhcccccC-----CC-CCCCCCCCCCEEEEEEEEHHHHhC
Confidence 8753211 0 0000 11 23445555542 11 122346799999999999999999
Q ss_pred cceeEEeeceeeeCCCCCCCCccCCCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCc
Q 016833 100 GTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGE 178 (382)
Q Consensus 100 G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~ 178 (382)
|++++|.+++.+.|+.|+|+|.+.+.. .+|+.|+|+|.++..+ | ++ +++.+|+.|+|+|+++. +.|..|+|+
T Consensus 156 G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~ 228 (389)
T PRK14295 156 GATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--G--GF-SLSEPCPDCKGRGLIAD--DPCLVCKGS 228 (389)
T ss_pred CceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--c--ce-EEEEecCCCcceeEEec--cCCCCCCCC
Confidence 999999999999999999999998764 7899999999987654 3 33 46789999999999986 889999999
Q ss_pred eEEEeceEEEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEE
Q 016833 179 KVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVIT 257 (382)
Q Consensus 179 g~~~~~~~l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~ 257 (382)
+++.+.++++|.||+|+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+
T Consensus 229 g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~ 308 (389)
T PRK14295 229 GRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVP 308 (389)
T ss_pred ceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEE
Confidence 999999999999999999999999999999854 6678999999999999999999999999999999999999999999
Q ss_pred ecCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 258 HLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 258 tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
||||+.+.|+||++ +++|++++|+|+|||.. ...+|||||+|+|.||++|+++|+++|++++..
T Consensus 309 tldG~~~~v~ip~g--~~~g~~iri~G~G~p~~--~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~ 372 (389)
T PRK14295 309 TLGGPPVTVKLPPG--TPNGRVLRVRGKGAVRK--DGTRGDLLVTVEVAVPKDLSGKAREALEAFREA 372 (389)
T ss_pred CCCCCEEEEEECCc--cCCCcEEEECCCCcCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999899999998 79999999999999964 346899999999999999999999999999863
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-68 Score=530.49 Aligned_cols=304 Identities=29% Similarity=0.544 Sum_probs=264.2
Q ss_pred CCcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCCCCCC
Q 016833 10 DNTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMGGG 51 (382)
Q Consensus 10 ~~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~~~ 51 (382)
..+|||+||||+++ || |||||+||++||+||+++++++..++
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~ 81 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSG 81 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCC
Confidence 35799999999998 99 99999999999999998876421111
Q ss_pred -CC----CCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCc
Q 016833 52 -GG----AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS 126 (382)
Q Consensus 52 -~~----~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 126 (382)
++ +.++.|+|++|||.+++ ++++....+.++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|......
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~g~~-~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 160 (366)
T PRK14294 82 FSGFDDIFSSFGDIFEDFFGFGGG-RRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTS 160 (366)
T ss_pred cCccccchhhhhhhHHHhhccCCC-cCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCC
Confidence 11 12356899999972111 1111112346799999999999999999999999999999999999999987764
Q ss_pred -ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCC
Q 016833 127 -MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 205 (382)
Q Consensus 127 -~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~g 205 (382)
.+|+.|+|+|.++.. . ||+ |++.+|+.|+|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|
T Consensus 161 ~~~C~~C~G~G~~~~~--~--G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 233 (366)
T PRK14294 161 PTTCPQCGGSGQVTQS--Q--GFF-SIRTTCPRCRGMGKVIV--SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRG 233 (366)
T ss_pred cccCCCcCCeEEEEEE--e--eeE-EEEeeCCCCCCcCeecC--cCCCCCCCceEeecceeEEEecCCCCcCCcEEEEcc
Confidence 789999999988643 3 466 47899999999999986 889999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcC
Q 016833 206 EADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 284 (382)
Q Consensus 206 eG~~~-~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g 284 (382)
+|++. ++..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|.||+| +++|++++|+|
T Consensus 234 ~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~iri~G 310 (366)
T PRK14294 234 EGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKG--TQPGDIFRFKG 310 (366)
T ss_pred CccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCC--cCCCCEEEECC
Confidence 99985 4678999999999999999999999999999999999999999999999997 68999998 79999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 285 EGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 285 ~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
+|||..+. ..+|||||+|+|.+|+.|+++++++|++|+..
T Consensus 311 ~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~ 350 (366)
T PRK14294 311 KGIPSLRG-GGRGDQIIEVEVKVPTRLTKKQEELLTEFARL 350 (366)
T ss_pred CCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99997643 36899999999999999999999999999953
No 23
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-67 Score=525.24 Aligned_cols=308 Identities=29% Similarity=0.586 Sum_probs=267.2
Q ss_pred cchhhhcCCCCC--------------------------------------ce-eccCccccccccccchhhhhCCCCC-C
Q 016833 12 TKYYEILGVSKK--------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMGG-G 51 (382)
Q Consensus 12 ~~~Y~iLgv~~~--------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~~-~ 51 (382)
+|||+||||+++ || |||||+||++||+||+++++++.++ +
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 699999999999 99 9999999999999999877532111 0
Q ss_pred -C---CCCCchhhhhcccCCCC----CCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccC
Q 016833 52 -G---GAHDPFDIFQSFFGGSP----FGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKS 123 (382)
Q Consensus 52 -~---~~~~~~d~F~~~Fggg~----f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 123 (382)
+ ++.++.|+|+.|||++. +++.++..+.++++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~ 162 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKN 162 (365)
T ss_pred ccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCC
Confidence 0 12467799999998421 011011111223588999999999999999999999999999999999999987
Q ss_pred CCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEe
Q 016833 124 GASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF 203 (382)
Q Consensus 124 ~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~ 203 (382)
....+|+.|+|+|++...++.|+ +.++.+.+|+.|.|+|+++. +.|+.|+|++++.+.+.++|.||||+.+|++|+|
T Consensus 163 ~~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 239 (365)
T PRK14290 163 GKLITCPTCHGTGQQRIVRGQGF-FRMVTVTTCRTCGGRGRIPE--EKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRV 239 (365)
T ss_pred CCCccCCCCCCcCEEEEEeccCe-EEEEEEEeCCCCCCceeEcc--CCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEE
Confidence 76689999999999887775444 44667899999999999976 8999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEc
Q 016833 204 PGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIN 283 (382)
Q Consensus 204 ~geG~~~~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~ 283 (382)
+|+|++ +++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+|++|+ +.|+||++ +++|++++|+
T Consensus 240 ~g~G~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g--~~~g~~iri~ 315 (365)
T PRK14290 240 KGKGQS-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEG--TQPGEVLKIK 315 (365)
T ss_pred ccccCC-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCc--cCCCcEEEEC
Confidence 999996 7889999999999999999999999999999999999999999999999996 89999998 8999999999
Q ss_pred CCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCCCC
Q 016833 284 DEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRT 327 (382)
Q Consensus 284 g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~~~ 327 (382)
|+|||..+. ..+|||||+|+|.+|+.|+++++++|+++|+.+.
T Consensus 316 g~G~p~~~~-~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~ 358 (365)
T PRK14290 316 GAGMPHLNG-HGSGDLLVRINVEVPKRLTSKQKELIREFFDIKE 358 (365)
T ss_pred CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 999997543 3589999999999999999999999999997554
No 24
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-67 Score=523.58 Aligned_cols=309 Identities=32% Similarity=0.616 Sum_probs=270.9
Q ss_pred CcchhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCCC-CC-
Q 016833 11 NTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMG-GG- 51 (382)
Q Consensus 11 ~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~-~~- 51 (382)
..|||+||||+++ || |||||+||++||+||+++++++.+ ++
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~ 81 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM 81 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence 4699999999998 99 999999999999999988763211 11
Q ss_pred CCCCCchhhhhcccCCCC-CCC-C-CCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCc-c
Q 016833 52 GGAHDPFDIFQSFFGGSP-FGG-G-SSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-M 127 (382)
Q Consensus 52 ~~~~~~~d~F~~~Fggg~-f~g-~-~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~ 127 (382)
++..++.|+|++|||+.+ +++ + +.+.+++.++.|+.+.|.|||||+|+|+++++++++.++|+.|+|+|...... .
T Consensus 82 ~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~ 161 (374)
T PRK14293 82 GDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPT 161 (374)
T ss_pred ccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCe
Confidence 112245689999997411 110 0 01122345789999999999999999999999999999999999999987764 7
Q ss_pred cCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCCCC
Q 016833 128 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEA 207 (382)
Q Consensus 128 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~geG 207 (382)
+|+.|+|+|++...++++||++++ +.+|+.|.|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|+|
T Consensus 162 ~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G 238 (374)
T PRK14293 162 TCSTCGGAGQVRRATRTPFGSFTQ-VSECPTCNGTGQVIE--DPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEG 238 (374)
T ss_pred eCCCCCCcceEEEEEecCcceEEE-EeeCCCCCcceeEec--cCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCc
Confidence 899999999999999999999886 689999999999976 88999999999999999999999999999999999999
Q ss_pred CCC-CCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcCCC
Q 016833 208 DEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEG 286 (382)
Q Consensus 208 ~~~-~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~G 286 (382)
++. ++..+|||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+||||+ +.|++|++ +++|++++|+|+|
T Consensus 239 ~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~--~~~g~~~ri~g~G 315 (374)
T PRK14293 239 DAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAG--TQPNTVLTLENKG 315 (374)
T ss_pred cCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCC--CCCCCEEEECCCC
Confidence 985 4567899999999999999999999999999999999999999999999997 78999997 7999999999999
Q ss_pred CCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 287 MPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 287 mP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
||..+.+..+|||||+|+|.||+.|+++++++|++|+..
T Consensus 316 ~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~ 354 (374)
T PRK14293 316 VPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLAKI 354 (374)
T ss_pred CCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 998655456899999999999999999999999999964
No 25
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-67 Score=523.37 Aligned_cols=300 Identities=35% Similarity=0.700 Sum_probs=261.9
Q ss_pred CcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCCCC-CC
Q 016833 11 NTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMG-GG 51 (382)
Q Consensus 11 ~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~-~~ 51 (382)
.+|||+||||+++ || |||||+||+.||+||++++..+.+ ++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 5799999999999 99 999999999999999988763211 11
Q ss_pred -C---CCCC-chhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCc
Q 016833 52 -G---GAHD-PFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS 126 (382)
Q Consensus 52 -~---~~~~-~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 126 (382)
+ ++.+ +.|+|+.|||+++ + ++.++++++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|...+..
T Consensus 83 ~~~~~~~~~~f~~~f~~~fgg~~---~-~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~ 158 (371)
T PRK10767 83 FGGGGGFGDIFGDIFGDIFGGGR---G-GGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTS 158 (371)
T ss_pred CCCccccccchhhhhhhhccCCc---c-ccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCC
Confidence 1 1123 4467777776321 1 1123356899999999999999999999999999999999999999988764
Q ss_pred -ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCC
Q 016833 127 -MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 205 (382)
Q Consensus 127 -~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~g 205 (382)
..|+.|+|+|+++..+ ||++ ++.+|+.|+|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|
T Consensus 159 ~~~C~~C~G~G~~~~~~----g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 231 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQ----GFFT-VQQTCPTCHGRGKIIK--DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSG 231 (371)
T ss_pred CccCCCCCCeeEEEEee----ceEE-EEEeCCCCCCceeECC--CCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEec
Confidence 7899999999876543 4664 7789999999999986 889999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcC
Q 016833 206 EADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 284 (382)
Q Consensus 206 eG~~~-~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g 284 (382)
+|++. ++..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||. +.|++|++ +++|++++|+|
T Consensus 232 ~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~-i~v~ip~g--~~~g~~~~i~g 308 (371)
T PRK10767 232 EGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGR-VKLKIPEG--TQTGKLFRLRG 308 (371)
T ss_pred CccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCc-EEEEeCCC--CCCCCEEEECC
Confidence 99984 5678999999999999999999999999999999999999999999999994 89999998 79999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 285 EGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 285 ~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
+|||..+ ...+|||||+|+|.||+.|+++++++|++++..
T Consensus 309 ~G~p~~~-~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~ 348 (371)
T PRK10767 309 KGVKSVR-SGARGDLYCQVVVETPVNLTKRQKELLEEFEES 348 (371)
T ss_pred CCcCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999764 346899999999999999999999999999963
No 26
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.7e-67 Score=522.26 Aligned_cols=302 Identities=30% Similarity=0.625 Sum_probs=261.0
Q ss_pred cchhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCC--C--C
Q 016833 12 TKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGM--G--G 50 (382)
Q Consensus 12 ~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~--~--~ 50 (382)
+|||+||||+++ || ||+|+.||+.||+||++++.++. + +
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g 82 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGG 82 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCC
Confidence 799999999999 99 99999999999999998876321 1 1
Q ss_pred C-CCC-CCchhhhhcccCCCCCCCCCC-CC-ccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCc
Q 016833 51 G-GGA-HDPFDIFQSFFGGSPFGGGSS-RG-RRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS 126 (382)
Q Consensus 51 ~-~~~-~~~~d~F~~~Fggg~f~g~~~-~~-~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 126 (382)
+ +++ .++.++|+.||++. |++++. .+ ..+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+..
T Consensus 83 ~~~~~~~~~~~~f~~~f~~~-~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~ 161 (372)
T PRK14300 83 NHGGFHPDINDIFGDFFSDF-MGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGET 161 (372)
T ss_pred CCCccccchhhhHHHHHHhh-cCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCC
Confidence 1 111 13445666666421 111111 11 1235789999999999999999999999999999999999999988764
Q ss_pred -ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCC
Q 016833 127 -MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 205 (382)
Q Consensus 127 -~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~g 205 (382)
.+|+.|+|+|.++.. +||++ ++.+|+.|+|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|
T Consensus 162 ~~~C~~C~G~G~~~~~----~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g 234 (372)
T PRK14300 162 VTTCDACSGVGATRMQ----QGFFT-IEQACHKCQGNGQIIK--NPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTG 234 (372)
T ss_pred CccCCCccCeEEEEEe----eceEE-EEEeCCCCCccceEeC--CCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEec
Confidence 799999999987642 25665 7889999999999986 889999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcC
Q 016833 206 EADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 284 (382)
Q Consensus 206 eG~~~-~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g 284 (382)
+|++. ++..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+.|.|+||+| +++|++++|+|
T Consensus 235 ~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g--~~~g~~iri~g 312 (372)
T PRK14300 235 EGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG--TQNGDQLRLRS 312 (372)
T ss_pred cccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCcEEEECC
Confidence 99985 5678999999999999999999999999999999999999999999999998899999998 79999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCC
Q 016833 285 EGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 324 (382)
Q Consensus 285 ~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp 324 (382)
+|||..+ ...+|||||+|+|.||++||++|+++|++|+.
T Consensus 313 ~G~p~~~-~~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~ 351 (372)
T PRK14300 313 KGMSKMR-STIRGDMLTHIHVEVPKNLSKRQRELLEEFKK 351 (372)
T ss_pred CCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999753 34689999999999999999999999999985
No 27
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.7e-67 Score=520.86 Aligned_cols=303 Identities=28% Similarity=0.583 Sum_probs=265.3
Q ss_pred CCCCcchhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCCCC
Q 016833 8 KSDNTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMGG 50 (382)
Q Consensus 8 ~~~~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~~ 50 (382)
||.++|||++|||+++ || |||||+||++||+||++++++....
T Consensus 1 ~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~ 80 (378)
T PRK14283 1 MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQE 80 (378)
T ss_pred CCCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccc
Confidence 5678999999999998 99 9999999999999999877521100
Q ss_pred C----CC-------C-CCchhhhhcc-cCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCC
Q 016833 51 G----GG-------A-HDPFDIFQSF-FGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCK 117 (382)
Q Consensus 51 ~----~~-------~-~~~~d~F~~~-Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~ 117 (382)
+ .. + .++.|+|+.| ||+ + +.+.++++.|+.++|.|||+|+|+|+++++.+++.+.|+.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~f~~~~fgg-----~--~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~ 153 (378)
T PRK14283 81 DIFNNINFEDIFQGFGFGIGNIFDMFGFGG-----G--SRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCN 153 (378)
T ss_pred ccccccCccccccccccchhhhccccccCC-----C--CCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCC
Confidence 0 00 0 0223445444 431 1 112345789999999999999999999999999999999999
Q ss_pred CCCccCCCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCC
Q 016833 118 GKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQ 196 (382)
Q Consensus 118 G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 196 (382)
|+|...+.. .+|+.|+|+|++...+++++|++++ +.+|+.|.|+|+++. +.|..|+|++++.+.+.++|.||||++
T Consensus 154 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~ 230 (378)
T PRK14283 154 GSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMN-VTTCPDCQGEGKIVE--KPCSNCHGKGVVRETKTISVKIPAGVE 230 (378)
T ss_pred ccccCCCCCCccCCCcCCccEEEEEEeccCceEEE-EEECCCCCccceecC--CCCCCCCCceeeccceeEEEEECCCCC
Confidence 999987764 7899999999999999999999865 579999999999976 889999999999999999999999999
Q ss_pred CCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCcccc
Q 016833 197 NGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVK 275 (382)
Q Consensus 197 ~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~ 275 (382)
+|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+|||| .|.|.+|+| ++
T Consensus 231 ~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g--~~ 307 (378)
T PRK14283 231 TGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAG--TQ 307 (378)
T ss_pred CCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCC--CC
Confidence 999999999999854 57899999999999999999999999999999999999999999999999 589999998 79
Q ss_pred CCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCC
Q 016833 276 PDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 324 (382)
Q Consensus 276 ~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp 324 (382)
+|++++|+|+|||... ...+|||||+|+|.||++|+++|+++|++++.
T Consensus 308 ~g~~~ri~g~G~p~~~-~~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~ 355 (378)
T PRK14283 308 SGTTFRLKGHGMPSLR-WSGKGNLYVKVKVVVPKKLSPKQKELLREFAS 355 (378)
T ss_pred CCCEEEECCCCCCCCC-CCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 9999999999999764 33689999999999999999999999999985
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.4e-66 Score=518.14 Aligned_cols=305 Identities=32% Similarity=0.644 Sum_probs=260.7
Q ss_pred CcchhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCCC--CC
Q 016833 11 NTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMG--GG 51 (382)
Q Consensus 11 ~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~--~~ 51 (382)
.+|||+||||+++ || |||||+||++||+||++++..+.+ ++
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 81 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence 4799999999999 99 999999999999999987753211 00
Q ss_pred -C-----CCCCchhhhhccc---CCC-CCCCC----CCC--CccccCCceeEeccccccccccCcceeEEeeceeeeCCC
Q 016833 52 -G-----GAHDPFDIFQSFF---GGS-PFGGG----SSR--GRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTK 115 (382)
Q Consensus 52 -~-----~~~~~~d~F~~~F---ggg-~f~g~----~~~--~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~ 115 (382)
. .+.++.|+|+.|| |.+ .|++. +++ ..++.++.|+.+.|.|||+|+|+|+++++.+++.+.|+.
T Consensus 82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~ 161 (382)
T PRK14291 82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEA 161 (382)
T ss_pred ccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCC
Confidence 0 1235667888874 211 12210 110 122457899999999999999999999999999999999
Q ss_pred CCCCCccCCCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccC
Q 016833 116 CKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKG 194 (382)
Q Consensus 116 C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G 194 (382)
|+|+|...+.. .+|+.|+|+|.++.. +++++++.+|+.|+|+|. + ++.|..|+|.+++.+.++|+|+||||
T Consensus 162 C~G~G~~~~~~~~~C~~C~G~G~~~~~-----~g~~~~~~~C~~C~G~G~-~--~~~C~~C~G~g~v~~~~~l~V~Ip~G 233 (382)
T PRK14291 162 CGGTGYDPGSGEKVCPTCGGSGEIYQR-----GGFFRISQTCPTCGGEGV-L--REPCSKCNGRGLVIKKETIKVRIPPG 233 (382)
T ss_pred CccccCCCCCCCccCCCCCCceEEEEe-----cceEEEEecCCCCCCceE-E--ccCCCCCCCCceEEeeeEEEEEeCCC
Confidence 99999988764 789999999987654 134567899999999996 4 38899999999999999999999999
Q ss_pred CCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCcc
Q 016833 195 MQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEV 273 (382)
Q Consensus 195 ~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~v 273 (382)
+.+|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+.+.|+||+|
T Consensus 234 ~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g-- 311 (382)
T PRK14291 234 VDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG-- 311 (382)
T ss_pred CCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc--
Confidence 99999999999999864 788999999999999999999999999999999999999999999999999899999998
Q ss_pred ccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC--CCC------HHHHHHHHHhCCCC
Q 016833 274 VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPE--SLS------PDQCKMLETVLPPR 326 (382)
Q Consensus 274 i~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~--~l~------~~~~~~l~~~lp~~ 326 (382)
+++|++++|+|+|||..+. ..+|||||+|+|.||+ .|+ ++|+++|++|+...
T Consensus 312 ~~~G~~i~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~ 371 (382)
T PRK14291 312 TKEGDKIRVPGKGMPRLKG-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLL 371 (382)
T ss_pred cCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhc
Confidence 7999999999999997643 3689999999999998 499 99999999987543
No 29
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.9e-66 Score=517.70 Aligned_cols=311 Identities=32% Similarity=0.661 Sum_probs=268.5
Q ss_pred CCCCcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCCCC
Q 016833 8 KSDNTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMG 49 (382)
Q Consensus 8 ~~~~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~ 49 (382)
|+.++|||++|||+++ || |||||+||++||+||+++++++.+
T Consensus 1 ~~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~ 80 (386)
T PRK14289 1 MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAG 80 (386)
T ss_pred CCccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCC
Confidence 3456899999999999 99 999999999999999988763211
Q ss_pred -CC--CCCCCchhhhhcc---cCCC--CCCC----C-CCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCC
Q 016833 50 -GG--GGAHDPFDIFQSF---FGGS--PFGG----G-SSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKC 116 (382)
Q Consensus 50 -~~--~~~~~~~d~F~~~---Fggg--~f~g----~-~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C 116 (382)
++ +++.++.|+|+.| |++. ++++ + +.....+.++.|+++.|.|||||+|+|+++++.+++.+.|+.|
T Consensus 81 ~~~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C 160 (386)
T PRK14289 81 GGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHC 160 (386)
T ss_pred CCCCCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCC
Confidence 11 1122444554433 5431 1100 0 0111234578999999999999999999999999999999999
Q ss_pred CCCCccCCCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCC
Q 016833 117 KGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGM 195 (382)
Q Consensus 117 ~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~ 195 (382)
+|+|...... .+|+.|+|+|+++..++++||++++ +.+|+.|.|+|+++. ..|+.|+|++++.+.++++|.||+|+
T Consensus 161 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~ 237 (386)
T PRK14289 161 HGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQT-QSTCPTCNGEGKIIK--KKCKKCGGEGIVYGEEVITVKIPAGV 237 (386)
T ss_pred CCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEE-EEecCCCCccccccC--cCCCCCCCCcEEeeeEEEEEEeCCCC
Confidence 9999987654 7899999999999999999999865 899999999999986 88999999999999999999999999
Q ss_pred CCCCEEEeCCCCCCC-CCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccc
Q 016833 196 QNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVV 274 (382)
Q Consensus 196 ~~g~~i~~~geG~~~-~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi 274 (382)
++|++|+|+|+|++. ++..+|||+|+|++++|+.|+|+++||++++.|+|.+||+|+++.|+||||+ +.|.||+| +
T Consensus 238 ~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~ 314 (386)
T PRK14289 238 AEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAG--T 314 (386)
T ss_pred CCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCc--c
Confidence 999999999999985 4678999999999999999999999999999999999999999999999997 89999998 7
Q ss_pred cCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 275 KPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 275 ~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
++|++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 315 ~~g~~~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~ 364 (386)
T PRK14289 315 QPGKVLRLRNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMENS 364 (386)
T ss_pred CCCcEEEECCCCcCCCCC-CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 999999999999997543 36899999999999999999999999999974
No 30
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.4e-66 Score=512.66 Aligned_cols=303 Identities=31% Similarity=0.656 Sum_probs=266.8
Q ss_pred chhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCCC-C--CC
Q 016833 13 KYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMG-G--GG 52 (382)
Q Consensus 13 ~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~-~--~~ 52 (382)
|||+||||+++ || |||||+||++||+||+++..++.+ + ++
T Consensus 3 d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~~ 82 (371)
T PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFGG 82 (371)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccCc
Confidence 89999999999 99 999999999999999876421101 1 11
Q ss_pred CCCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCC--cccCC
Q 016833 53 GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA--SMKCS 130 (382)
Q Consensus 53 ~~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~--~~~C~ 130 (382)
.++|++|+|+.|||+++++++ ...+++.++.|+.+.+.|||+|+|+|+++++.+++.+.|+.|+|+|..... ..+|+
T Consensus 83 ~~~d~~d~f~~~fg~~~~~~~-~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~ 161 (371)
T PRK14292 83 MGFDPMDIFEQLFGGAGFGGG-RGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCP 161 (371)
T ss_pred cCCChHHHHHHhhCCCCcCCC-CCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCC
Confidence 124667999999985322111 111234679999999999999999999999999999999999999998764 47899
Q ss_pred CCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCCCCCCC
Q 016833 131 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA 210 (382)
Q Consensus 131 ~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~geG~~~ 210 (382)
.|+|+|.+...+++.||++++ +.+|+.|+|.|+.+. +.|+.|+|++++.+.+.++|.||+|+.+|++|+|+|+|++.
T Consensus 162 ~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~ 238 (371)
T PRK14292 162 TCRGAGAVRAQARTIFGVVET-QQPCPTCRGEGQIIT--DPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEG 238 (371)
T ss_pred CCCCccEEEEEEeccCceEEE-eeecCCCcccceecC--CCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCC
Confidence 999999999888888999865 779999999999976 89999999999999999999999999999999999999997
Q ss_pred CCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcCCCCCCC
Q 016833 211 PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMY 290 (382)
Q Consensus 211 ~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP~~ 290 (382)
+++. |||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+. .|.+|+| +++|++++|+|+|||..
T Consensus 239 ~~~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~-~v~ip~g--~~~g~~~~i~g~G~p~~ 314 (371)
T PRK14292 239 PGGN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIEVKPG--TQHGDLHRLRGQGMPRL 314 (371)
T ss_pred CCCC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCE-EEecCCC--cCCCcEEEECCCCCCCC
Confidence 7665 999999999999999999999999999999999999999999999984 7999998 79999999999999976
Q ss_pred CCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCC
Q 016833 291 QRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 324 (382)
Q Consensus 291 ~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp 324 (382)
++ ..+|||||+|+|.||+.|+++|+++|++++.
T Consensus 315 ~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~ 347 (371)
T PRK14292 315 QG-AGTGDLIVEYEIAVPKQLSPEAREALEAYAR 347 (371)
T ss_pred CC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 43 3579999999999999999999999999984
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9e-49 Score=378.44 Aligned_cols=229 Identities=34% Similarity=0.629 Sum_probs=192.6
Q ss_pred CcchhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCC-----
Q 016833 11 NTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGM----- 48 (382)
Q Consensus 11 ~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~----- 48 (382)
.+|||+||||+++ || |||||+||+.||+||++++..+.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 5799999999999 99 99999999999999988643211
Q ss_pred C-CC-CC-----CCCchhhhhcccCCC-CCCCCC----CCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCC
Q 016833 49 G-GG-GG-----AHDPFDIFQSFFGGS-PFGGGS----SRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKC 116 (382)
Q Consensus 49 ~-~~-~~-----~~~~~d~F~~~Fggg-~f~g~~----~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C 116 (382)
+ ++ ++ ..++.|+|+.|||++ ++++.+ .....++++.|+.+.+.|||+|+|.|+++++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~-------- 154 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA-------- 154 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC--------
Confidence 0 01 11 135678999999852 111100 0012346789999999999999999999887531
Q ss_pred CCCCccCCCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCC
Q 016833 117 KGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQ 196 (382)
Q Consensus 117 ~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 196 (382)
.+.++|+||||++
T Consensus 155 -------------------------------------------------------------------g~~~~V~Ip~G~~ 167 (291)
T PRK14299 155 -------------------------------------------------------------------GERLSVRIPPGVR 167 (291)
T ss_pred -------------------------------------------------------------------CEEEEEecCCCcC
Confidence 1357899999999
Q ss_pred CCCEEEeCCCCCCCCCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccC
Q 016833 197 NGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKP 276 (382)
Q Consensus 197 ~g~~i~~~geG~~~~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~ 276 (382)
+|++|+|+|+|++. |||+|+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|++|++ +++
T Consensus 168 ~G~~ir~~g~G~~~-----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~--~~~ 239 (291)
T PRK14299 168 EGQVIRLAGKGRQG-----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPR--TQA 239 (291)
T ss_pred CCcEEEECCCCCCC-----CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCC--cCC
Confidence 99999999999863 99999999999999999999999999999999999999999999997 89999987 899
Q ss_pred CcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCC
Q 016833 277 DQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 324 (382)
Q Consensus 277 g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp 324 (382)
|++++|+|+|||.. +..+|||||+|+|.||+.|+++++++|++|+.
T Consensus 240 g~~~rl~g~G~p~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~ 285 (291)
T PRK14299 240 GRKLRLKGKGWPRG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAE 285 (291)
T ss_pred CCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999963 35689999999999999999999999999974
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=2.2e-47 Score=371.32 Aligned_cols=245 Identities=28% Similarity=0.434 Sum_probs=201.0
Q ss_pred CcchhhhcCCCCC------------------------------------ce-eccCccccccccccchh----hhhCC--
Q 016833 11 NTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGED----ALKEG-- 47 (382)
Q Consensus 11 ~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~----g~~~g-- 47 (382)
.+|||+||||+++ || |||||+||+.||+||+. ++.+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~ 82 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ 82 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence 4799999999999 99 99999999999999864 22211
Q ss_pred CCCC--CCCCCchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCC
Q 016833 48 MGGG--GGAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA 125 (382)
Q Consensus 48 ~~~~--~~~~~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 125 (382)
.+++ ....++.|+|+.|||+++ +..+...++++.|+.+++.|||+|+|+|+++++.+++.+ |.
T Consensus 83 ~~~~~~~~~~~~~~~f~~~~g~~~---~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~~-------- 147 (306)
T PRK10266 83 HGDGQSFNAEDFDDIFSSIFGQHA---RQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----YN-------- 147 (306)
T ss_pred cCCCCCCCCCCHHHHHHHHhCCCC---CCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----cc--------
Confidence 0011 112357799999997421 111122345789999999999999999999999887642 21
Q ss_pred cccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCC
Q 016833 126 SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 205 (382)
Q Consensus 126 ~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~g 205 (382)
|.|... + ...++++|.||+|+++|++|+|+|
T Consensus 148 --------g~G~~~-----------~------------------------------~~~~~~~V~Ip~G~~~G~~i~~~g 178 (306)
T PRK10266 148 --------AFGMIE-----------Q------------------------------EIPKTLNVKIPAGVGNGQRIRLKG 178 (306)
T ss_pred --------CCCeEE-----------E------------------------------eeeEEEEEEECCCCcCCcEEEEec
Confidence 222211 0 123679999999999999999999
Q ss_pred CCCCCC-CCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcC
Q 016833 206 EADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 284 (382)
Q Consensus 206 eG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g 284 (382)
+|++.+ +..+|||+|+|++++|+.|+|+|+||+++++|||.+||+|+++.|+|+||+ +.|++|++ +++|++++|+|
T Consensus 179 ~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g--~~~g~~~ri~g 255 (306)
T PRK10266 179 QGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG--SQAGQRLRVKG 255 (306)
T ss_pred CCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCC--cCCCCEEEECC
Confidence 999854 567899999999999999999999999999999999999999999999998 89999998 69999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 285 EGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 285 ~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
+|||..+ .+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 256 ~G~p~~~---~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~ 293 (306)
T PRK10266 256 KGLVSKK---QTGDLYAVLKIVMPPKPDEKTAALWQQLADA 293 (306)
T ss_pred CCCCCCC---CCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999742 4899999999999999999999999999864
No 33
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=2.5e-32 Score=282.07 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=140.4
Q ss_pred CCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCcccCCCCCcccEEEEEEecCCccceeecccCCCCcc
Q 016833 82 RGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKG 161 (382)
Q Consensus 82 kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G 161 (382)
..-+|.+.|.|+|+++|+|+++++++.|.+.| |.|
T Consensus 655 ~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G----------------------------------------- 689 (871)
T TIGR03835 655 TNVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNT----------------------------------------- 689 (871)
T ss_pred cccceEEecccCHHHHhCCCeEEEEEEEeecc----CCC-----------------------------------------
Confidence 45688999999999999999999999887654 221
Q ss_pred eeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCCCCCCCCCCCCccEEEEEEEecCCccccccccceeee
Q 016833 162 TGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 241 (382)
Q Consensus 162 ~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~geG~~~~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~ 241 (382)
...+.+.++|+|+||+|+++|++|+|+|+|++.+++. |||||+|++++|+.|+|+|+|||+++
T Consensus 690 ----------------~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v 752 (871)
T TIGR03835 690 ----------------ESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGC-GDLKVVFKVIPSNFFQIKNDGLHVAA 752 (871)
T ss_pred ----------------cceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCC-CCEEEEEEEcCCCCeEEECCeEEEEE
Confidence 1134456899999999999999999999999876664 99999999999999999999999999
Q ss_pred ccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEE
Q 016833 242 TLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVD 306 (382)
Q Consensus 242 ~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~ 306 (382)
+|+|.+||+|+++.|+||||+ +.|+||++ ++||++++|+|+|||.. ++.||||||+|.|.
T Consensus 753 ~ISL~EALLGgtIeIpTLDGr-VkLkIPpg--TqpGqvLRIkGKGMP~~--~~~RGDLyV~f~V~ 812 (871)
T TIGR03835 753 LVDPLVAYNGGIIDVFGPNKL-FNVRIPGG--IKVNDQVIFKDLGLTKT--KYDKGSLIVHLYYS 812 (871)
T ss_pred ecCHHHHhcCCEEEeeCCCCC-EEEeeCCC--CCCCcEEEECCCCCCCC--CCCCCCEEEEEEEe
Confidence 999999999999999999998 89999988 79999999999999954 34689999999986
No 34
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-34 Score=270.68 Aligned_cols=274 Identities=37% Similarity=0.655 Sum_probs=214.2
Q ss_pred CCCcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCCC--
Q 016833 9 SDNTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEGM-- 48 (382)
Q Consensus 9 ~~~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~-- 48 (382)
...+|||+||||+++ || |||||+||+.||+||++|++...
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~ 92 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKD 92 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccc
Confidence 457899999999999 99 99999999999999999997421
Q ss_pred CCCCCCCCchhhhhcccCCCCCC-CCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCcc
Q 016833 49 GGGGGAHDPFDIFQSFFGGSPFG-GGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASM 127 (382)
Q Consensus 49 ~~~~~~~~~~d~F~~~Fggg~f~-g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 127 (382)
+.+++++ .++|+.||+-.++. ++........++.++...++.+++++|.|...+..-.+.+.|. |.|+- .-
T Consensus 93 ~~~g~~~--~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g~~-----~~ 164 (336)
T KOG0713|consen 93 GEGGGGG--NDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APGTR-----KC 164 (336)
T ss_pred cccCCcc--cchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCccc-----cc
Confidence 1111111 47777777642221 1111123357899999999999999999988776555555543 11111 01
Q ss_pred cCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCCCC
Q 016833 128 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEA 207 (382)
Q Consensus 128 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~geG 207 (382)
.|. ..+..++.+||+++.+|. ..|..|.+.+.+.+...+++.+..|+..+....+..+|
T Consensus 165 ~~~------~~~~~~~~~~g~~~~~q~---------------~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 223 (336)
T KOG0713|consen 165 NCR------LEMFTQQEGPGRFQMLQE---------------AVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEG 223 (336)
T ss_pred CCh------hhheeeccCCChhhhhhh---------------hhhccCCccceeecCCceeeeeeecccCCceeeeeccC
Confidence 111 234456777777766652 45666777788889999999999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEecCCccccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcCCCC
Q 016833 208 DEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGM 287 (382)
Q Consensus 208 ~~~~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~Gm 287 (382)
-+..-+.+||+++.+..-+|+.|.|+++||++++.|+|.++|.|+...+.++|+..+.++.. .+..|+..++..++||
T Consensus 224 ~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~--~~~~p~~~~~~~~~~~ 301 (336)
T KOG0713|consen 224 EPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRK--KITWPGARTRKKGEGM 301 (336)
T ss_pred CcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhh--hccccchhhhhhhccc
Confidence 88778899999999999999999999999999999999999999999999999987666544 3468999999999999
Q ss_pred CCCCCCCCCCcEEEEEEEECCCC-CCH
Q 016833 288 PMYQRPFMRGKLYIHFTVDFPES-LSP 313 (382)
Q Consensus 288 P~~~~~~~~GdL~i~~~V~~P~~-l~~ 313 (382)
|..++....|++|++|.+.+|.+ ++.
T Consensus 302 ~~l~~~~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 302 PLLKNRNEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred hhhhccchhcceeEEecccCcccccch
Confidence 98777778999999999999966 555
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-28 Score=236.33 Aligned_cols=207 Identities=29% Similarity=0.645 Sum_probs=176.4
Q ss_pred chhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCCCCCCCCC
Q 016833 13 KYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMGGGGGAH 55 (382)
Q Consensus 13 ~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~~~~~~~ 55 (382)
|||+||||+++ || ||||++||+.||++|..+.. +..+
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~------~~~g 117 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHG------EFGG 117 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccc------cccC
Confidence 99999999999 99 99999999999999987511 1123
Q ss_pred CchhhhhcccCCCCCCCCCCCCccccCCceeEeccccccccccCcceeEEeeceeeeCCCCCCCCccCCCc-ccCCCCCc
Q 016833 56 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQG 134 (382)
Q Consensus 56 ~~~d~F~~~Fggg~f~g~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 134 (382)
++.++|..+|++ . ..+...+.++.+.+.++|+++-.|..+.+.+.....|.+|.|.|...+.. ..|..|.|
T Consensus 118 ~~~~~~~~~~~~-----~---~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 189 (288)
T KOG0715|consen 118 NPFDVFLEFFGG-----K---MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSG 189 (288)
T ss_pred CccchHHHhhcc-----c---ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhC
Confidence 688999999973 0 11223456778889999999999999999999999999999999888765 78999999
Q ss_pred ccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeCCCCCCCCCCC
Q 016833 135 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTV 214 (382)
Q Consensus 135 ~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~geG~~~~g~~ 214 (382)
+|.+....+..+.+ . +|..|.|.|.++. +.|..|.|.+.+...+.+.|.||+|+.++.+|++.+.+..
T Consensus 190 ~~~~~~~~~~~f~~----~-~~~~c~~~~~~~~--~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~----- 257 (288)
T KOG0715|consen 190 RGLVSNPKEDPFIL----Y-TCSYCLGRGLVLR--DNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND----- 257 (288)
T ss_pred cccccccccCCcce----e-ecccccccceecc--chHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-----
Confidence 99665443434322 2 8999999999988 4499999999999999999999999999999999998753
Q ss_pred CccEEEEEEEecCCccccccccceeeeccCHHH
Q 016833 215 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTE 247 (382)
Q Consensus 215 ~GDl~v~i~~k~h~~F~R~g~DL~~~~~I~l~e 247 (382)
||+|.|.|.+++.|+|+|.|+++++.|++.+
T Consensus 258 --~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 258 --DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred --eEEEEEEeccCcccccccCcccccccccccC
Confidence 9999999999999999999999999998754
No 36
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.86 E-value=4.6e-22 Score=156.56 Aligned_cols=81 Identities=41% Similarity=0.657 Sum_probs=70.3
Q ss_pred cceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHH
Q 016833 236 DLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQ 315 (382)
Q Consensus 236 DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~ 315 (382)
||+++++|+|+||++|+++.|+||||+.+.|++|++ +++|+.++|+|+|||...+++.+|||||+|+|.||++||++|
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~q 78 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPG--TQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQ 78 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST---STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCc--cCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 799999999999999999999999999999999998 899999999999999987766899999999999999999999
Q ss_pred HHH
Q 016833 316 CKM 318 (382)
Q Consensus 316 ~~~ 318 (382)
+++
T Consensus 79 k~l 81 (81)
T PF01556_consen 79 KEL 81 (81)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 37
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=8.5e-16 Score=150.72 Aligned_cols=208 Identities=21% Similarity=0.347 Sum_probs=129.5
Q ss_pred cchhhhcCCCCC--ce-eccCccccccccccchhhhhCCCC-CCCCCCC-chhhhhcccCCCCCCCCCCCC---------
Q 016833 12 TKYYEILGVSKK--RF-VLSDPEKREIYDQYGEDALKEGMG-GGGGAHD-PFDIFQSFFGGSPFGGGSSRG--------- 77 (382)
Q Consensus 12 ~~~Y~iLgv~~~--AY-vLsD~~KR~~YD~~G~~g~~~g~~-~~~~~~~-~~d~F~~~Fggg~f~g~~~~~--------- 77 (382)
+..||||..+.. || -...+... .-|..++ |++ .++++.| |.++|..-.++.....+..+.
T Consensus 51 ~eAYEVLsD~eKRa~YD~fG~~~~~----~gg~gg~--g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~i 124 (371)
T COG0484 51 NEAYEVLSDPEKRAAYDQFGHAGFK----AGGFGGF--GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEI 124 (371)
T ss_pred HHHHHHhCCHHHHHHhhccCccccc----cCCcCCC--CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEe
Confidence 368999999988 99 76665543 2221121 221 1225556 567885433211111111110
Q ss_pred --ccccCCceeEeccccc-cccccCcceeEEeeceeeeCCCCCCCCccCC--------CcccCCCCCcccEEEEEEecCC
Q 016833 78 --RRQRRGEDVIHPLKVS-LEDLYNGTSKKLSLSRNVICTKCKGKGSKSG--------ASMKCSGCQGSGMKVSIRHLGP 146 (382)
Q Consensus 78 --~~~~kg~di~~~l~vt-lee~~~G~~~~i~~~r~~~C~~C~G~G~~~~--------~~~~C~~C~G~G~~~~~~~~gp 146 (382)
....+|....+.++-. .-+.|.|...+ .-+..++|++|+|+|.... ..++|+.|+|+|.++
T Consensus 125 sleEa~~G~~~~i~~~~~~~C~~C~GsGak-~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i------- 196 (371)
T COG0484 125 TLEEAVFGVKKEIRVTRSVTCSTCHGSGAK-PGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII------- 196 (371)
T ss_pred EhhhhccCceeeEecceeeECCcCCCCCCC-CCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-------
Confidence 0012344333333221 33778888766 4456789999999997431 236899999999976
Q ss_pred ccceeecccCCCCcceeEEecCCCC-----CCCCC---------------------------------------------
Q 016833 147 SMIQQMQHPCNECKGTGETINDKDR-----CPQCK--------------------------------------------- 176 (382)
Q Consensus 147 g~~~~~~~~C~~C~G~G~~~~~k~~-----C~~C~--------------------------------------------- 176 (382)
+.+|+.|+|.|.+...+.. -....
T Consensus 197 ------~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~ 270 (371)
T COG0484 197 ------KDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEV 270 (371)
T ss_pred ------CCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEecc
Confidence 7899999999997653332 11111
Q ss_pred ---------C-ceE-EEeceEEEEEeccCCCCCCEEEeCCCCCCC-CCCCCccEEEEEEEecCCcccccccccee
Q 016833 177 ---------G-EKV-IQEKKVLEVIVEKGMQNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFV 239 (382)
Q Consensus 177 ---------G-~g~-~~~~~~l~V~Ip~G~~~g~~i~~~geG~~~-~g~~~GDl~v~i~~k~h~~F~R~g~DL~~ 239 (382)
| .-. ......++|+||+|++.|+.++|+|+|.+. .+...|||||.|++.-+..+......|+-
T Consensus 271 ~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~ 345 (371)
T COG0484 271 PISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLE 345 (371)
T ss_pred ccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHH
Confidence 2 111 111244999999999999999999999984 45667999999999988876655544443
No 38
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.6e-15 Score=142.60 Aligned_cols=106 Identities=37% Similarity=0.678 Sum_probs=95.7
Q ss_pred eceEEEEEeccCCCCCCEEEeCCCCCCCCCCCCccEEEEEEEecCCccccccccceee--eccCHHHHhCCCEEEEEecC
Q 016833 183 EKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVE--HTLSLTEALCGFQFVITHLD 260 (382)
Q Consensus 183 ~~~~l~V~Ip~G~~~g~~i~~~geG~~~~g~~~GDl~v~i~~k~h~~F~R~g~DL~~~--~~I~l~eAl~G~~~~i~tld 260 (382)
....+.+.+.+++..|+.+.+..+|+..++..|-++++++..++|..|.|.+.+|... ..|++.+|++|....+++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~ 277 (306)
T KOG0714|consen 198 RSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLD 277 (306)
T ss_pred ccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeeccc
Confidence 4677889999999999999999999988888899999999999999999999999999 99999999999999999999
Q ss_pred CcEEEEEeCCCccccCCcEEEEcCCCCCC
Q 016833 261 GRQLLIKSQPGEVVKPDQFKAINDEGMPM 289 (382)
Q Consensus 261 G~~l~i~~p~g~vi~~g~~~~i~g~GmP~ 289 (382)
++.+.+.+.. .++.++...+++++|||.
T Consensus 278 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 278 GRSYSLSINK-DLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred CccccCcccc-cccCCCceeeecCCCCCC
Confidence 9866554332 678999999999999985
No 39
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1.6e-15 Score=151.70 Aligned_cols=132 Identities=21% Similarity=0.481 Sum_probs=94.4
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC---C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCC
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS---G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 169 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k 169 (382)
..|.|....- -.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|+|.+...+
T Consensus 146 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 211 (371)
T PRK10767 146 DTCHGSGAKP-GTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-------------KDPCKKCHGQGRVEKEK 211 (371)
T ss_pred CCCCCcccCC-CCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-------------CCCCCCCCCCceEeeee
Confidence 4567766542 23346899999999643 1 235899999999865 57799999999875432
Q ss_pred CC---------------------C-C--------------------------------------CCCCceEE-EeceEEE
Q 016833 170 DR---------------------C-P--------------------------------------QCKGEKVI-QEKKVLE 188 (382)
Q Consensus 170 ~~---------------------C-~--------------------------------------~C~G~g~~-~~~~~l~ 188 (382)
.. - . .+.+.-.+ .-...++
T Consensus 212 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~ 291 (371)
T PRK10767 212 TLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVK 291 (371)
T ss_pred eEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEE
Confidence 22 0 0 00011111 0113589
Q ss_pred EEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccccceeee
Q 016833 189 VIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 241 (382)
Q Consensus 189 V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~ 241 (382)
|.||+|+++|++++|+|+|.+.+ +...|||||.|++..|+.|++++.+|+.++
T Consensus 292 v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 292 LKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred EEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999854 346799999999999999999998887754
No 40
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.56 E-value=5.9e-15 Score=111.50 Aligned_cols=65 Identities=43% Similarity=0.945 Sum_probs=53.8
Q ss_pred CCCCCCCCccCCCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCce
Q 016833 113 CTKCKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEK 179 (382)
Q Consensus 113 C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g 179 (382)
|+.|+|+|++++.. .+|+.|+|+|+++..++ .|+++++++.+|+.|+|+|+++ ++++|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~-~~~~~~~~~~~C~~C~G~G~~i-~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ-TPGGVFQMQQTCPKCGGTGKII-EKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE-SSSTTEEEEEE-TTTSSSSEE--TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe-CCCeEEEEEEECCCCcceeeEE-CCCCCCCCCCcC
Confidence 89999999977654 89999999999999888 7778889999999999999999 779999999975
No 41
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=2.9e-13 Score=135.28 Aligned_cols=132 Identities=20% Similarity=0.330 Sum_probs=96.5
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC-------C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
..|.|+..+ .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|+|.+
T Consensus 156 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 221 (369)
T PRK14282 156 PHCGGTGVE-PGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-------------GEYCHECGGSGRI 221 (369)
T ss_pred CCCCccCCC-CCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-------------CCCCCCCCCceeE
Confidence 567777655 223457899999999653 1 135899999999865 6789999999975
Q ss_pred ecCCCC-----CC-------------------------------------------------------CCCCceEEEe--
Q 016833 166 INDKDR-----CP-------------------------------------------------------QCKGEKVIQE-- 183 (382)
Q Consensus 166 ~~~k~~-----C~-------------------------------------------------------~C~G~g~~~~-- 183 (382)
...+.. -. .+.+...+..
T Consensus 222 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ld 301 (369)
T PRK14282 222 RRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPE 301 (369)
T ss_pred EEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCC
Confidence 542221 00 0111111111
Q ss_pred ceEEEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccccceeee
Q 016833 184 KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 241 (382)
Q Consensus 184 ~~~l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~ 241 (382)
.+.++|.||+|+++|++|+|+|+|++.+ +..+|||||+|+++.|+.|++++.+|+.++
T Consensus 302 G~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 302 GGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred CcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 1568999999999999999999999854 456899999999999999999998887653
No 42
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=3.7e-13 Score=134.62 Aligned_cols=126 Identities=21% Similarity=0.498 Sum_probs=90.1
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC---C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCC
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS---G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 169 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k 169 (382)
..|.|...+ .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|+|.+...+
T Consensus 149 ~~C~G~g~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 214 (372)
T PRK14300 149 DTCHGSGSE-KGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-------------KNPCKKCHGMGRYHKQR 214 (372)
T ss_pred CCCCCcccC-CCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-------------CCCCCCCCCceEEEeeE
Confidence 456777654 233457899999999753 1 235899999999875 67899999999875432
Q ss_pred CC---------------------C---------------------------------------CCCCCceEEEe--ceEE
Q 016833 170 DR---------------------C---------------------------------------PQCKGEKVIQE--KKVL 187 (382)
Q Consensus 170 ~~---------------------C---------------------------------------~~C~G~g~~~~--~~~l 187 (382)
.. . ..+.++..+.. .+.+
T Consensus 215 ~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i 294 (372)
T PRK14300 215 NLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKV 294 (372)
T ss_pred EEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEE
Confidence 22 0 01112222222 1579
Q ss_pred EEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccc
Q 016833 188 EVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGD 235 (382)
Q Consensus 188 ~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~ 235 (382)
+|+||+|+++|++|+|+|+|++.+ +..+|||||+|+++.|..|+-+..
T Consensus 295 ~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk 343 (372)
T PRK14300 295 NLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQR 343 (372)
T ss_pred EEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH
Confidence 999999999999999999999865 356899999999999976554443
No 43
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=8e-13 Score=132.00 Aligned_cols=133 Identities=21% Similarity=0.423 Sum_probs=96.4
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccCC------CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCC
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 169 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k 169 (382)
..|.|....- -.....|+.|+|+|.... ...+|+.|+|+|..+ ..+|+.|+|+|.+...+
T Consensus 148 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 213 (366)
T PRK14294 148 EECHGSGCEP-GTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-------------VSPCKTCHGQGRVRVSK 213 (366)
T ss_pred CCCCCccccC-CCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-------------CcCCCCCCCceEeecce
Confidence 4567766542 233578999999997531 236899999999865 67899999999875533
Q ss_pred CC-----CC-------------------------------------------------------CCCCceEEE-eceEEE
Q 016833 170 DR-----CP-------------------------------------------------------QCKGEKVIQ-EKKVLE 188 (382)
Q Consensus 170 ~~-----C~-------------------------------------------------------~C~G~g~~~-~~~~l~ 188 (382)
.. -. .+.+...+. -...++
T Consensus 214 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~ 293 (366)
T PRK14294 214 TVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERE 293 (366)
T ss_pred eEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEE
Confidence 22 00 011111111 114469
Q ss_pred EEeccCCCCCCEEEeCCCCCCCCC-CCCccEEEEEEEecCCccccccccceeeec
Q 016833 189 VIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEHT 242 (382)
Q Consensus 189 V~Ip~G~~~g~~i~~~geG~~~~g-~~~GDl~v~i~~k~h~~F~R~g~DL~~~~~ 242 (382)
|.||+|+++|++|+|+|+|++.++ ..+|||||+|++..|+.|+++..+|+..+.
T Consensus 294 v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 294 LKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred EEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999998654 468999999999999999999888877643
No 44
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=7.5e-13 Score=132.14 Aligned_cols=131 Identities=23% Similarity=0.478 Sum_probs=97.3
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC-----C-----CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS-----G-----ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-----~-----~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
..|.|....-. ....|+.|+|+|... + ...+|+.|+|+|.++ +.+|+.|+|+|.+
T Consensus 153 ~~C~G~g~~~~--~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 217 (365)
T PRK14290 153 PDCSGTGAKNG--KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------------EEKCPRCNGTGTV 217 (365)
T ss_pred CCCccccCCCC--CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------------cCCCCCCCCceeE
Confidence 45777765432 457899999999642 1 135899999999864 6789999999987
Q ss_pred ecCCCC---------------------C-------------------------------------CCCCCceEEE-eceE
Q 016833 166 INDKDR---------------------C-------------------------------------PQCKGEKVIQ-EKKV 186 (382)
Q Consensus 166 ~~~k~~---------------------C-------------------------------------~~C~G~g~~~-~~~~ 186 (382)
...+.. . ..|.+...+. ....
T Consensus 218 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~ 297 (365)
T PRK14290 218 VVNEDISVKIPKGATDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK 297 (365)
T ss_pred EEeeEEEEEECCCCCCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce
Confidence 553322 0 0111111111 1256
Q ss_pred EEEEeccCCCCCCEEEeCCCCCCCCC-CCCccEEEEEEEecCCccccccccceeee
Q 016833 187 LEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEH 241 (382)
Q Consensus 187 l~V~Ip~G~~~g~~i~~~geG~~~~g-~~~GDl~v~i~~k~h~~F~R~g~DL~~~~ 241 (382)
++|.||+|+++|++|+|+|+|++.++ ..+|||||+|+++.|+.|++++.+|+.++
T Consensus 298 i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 298 YNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999998654 46899999999999999999999988764
No 45
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=7.6e-13 Score=132.56 Aligned_cols=132 Identities=20% Similarity=0.394 Sum_probs=95.1
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC-------C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
..|.|...+- -.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|+|.+
T Consensus 145 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 210 (377)
T PRK14298 145 STCSGTGAKP-GTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-------------ESPCPVCSGTGKV 210 (377)
T ss_pred CCCCCCcccC-CCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-------------CCCCCCCCCccEE
Confidence 5667776652 23457899999999642 1 236899999999865 5789999999987
Q ss_pred ecCCCC-----CC-------------------------------------------------------CCCCceEEE-ec
Q 016833 166 INDKDR-----CP-------------------------------------------------------QCKGEKVIQ-EK 184 (382)
Q Consensus 166 ~~~k~~-----C~-------------------------------------------------------~C~G~g~~~-~~ 184 (382)
...+.. -. .|.+.-.+. -.
T Consensus 211 ~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 290 (377)
T PRK14298 211 RKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLY 290 (377)
T ss_pred EEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCC
Confidence 543222 00 011111111 11
Q ss_pred eEEEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccccceeee
Q 016833 185 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 241 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~~ 241 (382)
..++|.||+|+++|++++|+|+|.+.+ +...|||||+|++..|+.|++++.+|+.++
T Consensus 291 G~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 291 GKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999999854 345799999999999999999988887654
No 46
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=2e-12 Score=128.97 Aligned_cols=131 Identities=22% Similarity=0.452 Sum_probs=95.3
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccCC------CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCC
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 169 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k 169 (382)
..|+|+..+ .-.....|+.|+|+|.... ...+|+.|+|+|.++ ..+|..|+|+|.+...+
T Consensus 150 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 215 (365)
T PRK14285 150 ESCLGKKSE-KGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------------SNPCKSCKGKGSLKKKE 215 (365)
T ss_pred CCCCCcccC-CCCCCccCCCccCceeEEecCceeEEeeecCCCCCccccc-------------CCCCCCCCCCCEEeccE
Confidence 567787755 2334578999999996531 236899999999865 67899999999775432
Q ss_pred CC-----CC-------------------------------------------------------CCCCceEEEe--ceEE
Q 016833 170 DR-----CP-------------------------------------------------------QCKGEKVIQE--KKVL 187 (382)
Q Consensus 170 ~~-----C~-------------------------------------------------------~C~G~g~~~~--~~~l 187 (382)
.. -. .+.+.-.+.. .+.+
T Consensus 216 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v 295 (365)
T PRK14285 216 TIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKI 295 (365)
T ss_pred EEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEE
Confidence 22 00 0111111111 1579
Q ss_pred EEEeccCCCCCCEEEeCCCCCCCCCC-CCccEEEEEEEecCCccccccccceee
Q 016833 188 EVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLFVE 240 (382)
Q Consensus 188 ~V~Ip~G~~~g~~i~~~geG~~~~g~-~~GDl~v~i~~k~h~~F~R~g~DL~~~ 240 (382)
+|+||+|+++|++|+|+|+|++.++. ..|||||+|+++.|+.|++++..|+-.
T Consensus 296 ~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 349 (365)
T PRK14285 296 KIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN 349 (365)
T ss_pred EEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999986544 469999999999999999888766554
No 47
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=3.1e-12 Score=128.64 Aligned_cols=125 Identities=26% Similarity=0.483 Sum_probs=85.8
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC-------C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
..|.|.... .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|+|.+
T Consensus 159 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 224 (386)
T PRK14277 159 DVCKGSGAK-PGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-------------TDPCNKCGGTGRI 224 (386)
T ss_pred CCCCCCCcC-CCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-------------cCCCCCCCCCcEE
Confidence 456777655 223457899999999653 1 125899999999875 5789999999987
Q ss_pred ecCCCC---------------------C-C--------------------------------------CCCCceEEEe-c
Q 016833 166 INDKDR---------------------C-P--------------------------------------QCKGEKVIQE-K 184 (382)
Q Consensus 166 ~~~k~~---------------------C-~--------------------------------------~C~G~g~~~~-~ 184 (382)
...+.. . . .|.+.-.+.. .
T Consensus 225 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 304 (386)
T PRK14277 225 RRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLD 304 (386)
T ss_pred eeeeEEEEecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCC
Confidence 543222 0 0 0111111110 1
Q ss_pred eEEEEEeccCCCCCCEEEeCCCCCCCCC-CCCccEEEEEEEecCCcccccc
Q 016833 185 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKG 234 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~geG~~~~g-~~~GDl~v~i~~k~h~~F~R~g 234 (382)
..++|.||+|+++|++++|+|+|.+.++ ...|||||+|++.-+..++-+.
T Consensus 305 G~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~q 355 (386)
T PRK14277 305 GKVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQ 355 (386)
T ss_pred CCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHH
Confidence 3379999999999999999999997543 4579999999998776544433
No 48
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=3.9e-12 Score=128.05 Aligned_cols=125 Identities=22% Similarity=0.454 Sum_probs=89.9
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccCC------CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCC
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 169 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k 169 (382)
..|.|...+- -.....|+.|+|+|.... ...+|+.|+|+|.++ ..+|..|+|+|.+...+
T Consensus 177 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-------------~~~C~~C~G~g~v~~~~ 242 (392)
T PRK14279 177 TTCHGSGARP-GTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-------------EDPCEECKGTGVTTRTR 242 (392)
T ss_pred CCCccccccC-CCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-------------CCcCCCCCCCeEEEEee
Confidence 5677877653 234578999999997531 236899999999975 67899999999875433
Q ss_pred CC---------------------C-C--------------------------------------CCCCceEEE-eceEEE
Q 016833 170 DR---------------------C-P--------------------------------------QCKGEKVIQ-EKKVLE 188 (382)
Q Consensus 170 ~~---------------------C-~--------------------------------------~C~G~g~~~-~~~~l~ 188 (382)
.. - . .|.++..+. -...++
T Consensus 243 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~ 322 (392)
T PRK14279 243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVG 322 (392)
T ss_pred eeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEE
Confidence 22 0 0 011111111 114589
Q ss_pred EEeccCCCCCCEEEeCCCCCCCCCCCCccEEEEEEEecCCcccccc
Q 016833 189 VIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKG 234 (382)
Q Consensus 189 V~Ip~G~~~g~~i~~~geG~~~~g~~~GDl~v~i~~k~h~~F~R~g 234 (382)
|+||+|+++|++|+|+|+|++.++...|||||+|++..+..+..+.
T Consensus 323 v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~~v~~P~~Ls~~q 368 (392)
T PRK14279 323 VKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTVKVAVPPNLDGAA 368 (392)
T ss_pred EEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHH
Confidence 9999999999999999999986666789999999999886544333
No 49
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=4.5e-12 Score=126.89 Aligned_cols=131 Identities=21% Similarity=0.439 Sum_probs=92.8
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccCC------CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCC
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 169 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k 169 (382)
..|.|...+ .-.....|+.|+|+|.... ...+|+.|+|+|.++ ..+|+.|+|+|.+...+
T Consensus 148 ~~C~G~G~~-~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 213 (373)
T PRK14301 148 DDCGGSGAA-PGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-------------THPCPKCKGSGIVQQTR 213 (373)
T ss_pred CCCCCcccC-CCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-------------CCCCCCCCCCceeccce
Confidence 566777655 2234578999999996531 236899999999875 57899999999875433
Q ss_pred CC----------------------CC--------------------------------------CCCCceEEE-eceEEE
Q 016833 170 DR----------------------CP--------------------------------------QCKGEKVIQ-EKKVLE 188 (382)
Q Consensus 170 ~~----------------------C~--------------------------------------~C~G~g~~~-~~~~l~ 188 (382)
.. -. .+.+.-.+. -...++
T Consensus 214 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~ 293 (373)
T PRK14301 214 ELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVT 293 (373)
T ss_pred EEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEE
Confidence 22 00 011111111 114489
Q ss_pred EEeccCCCCCCEEEeCCCCCCCCC-CCCccEEEEEEEecCCccccccccceee
Q 016833 189 VIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVE 240 (382)
Q Consensus 189 V~Ip~G~~~g~~i~~~geG~~~~g-~~~GDl~v~i~~k~h~~F~R~g~DL~~~ 240 (382)
|+||+|+++|++++|+|+|.+.++ ...|||||+|++..|+.++.+..+|+..
T Consensus 294 v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 294 LDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred EEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998654 4579999999999998777666555543
No 50
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=5.8e-12 Score=126.88 Aligned_cols=131 Identities=20% Similarity=0.452 Sum_probs=94.3
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccCC------CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCC
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 169 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k 169 (382)
..|+|+..+.. .....|+.|+|+|.... ...+|+.|+|+|.++ ..+|+.|+|+|.+...+
T Consensus 162 ~~C~G~G~~~~-~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 227 (391)
T PRK14284 162 DACSGSGANSS-QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-------------TDPCSVCRGQGRIKDKR 227 (391)
T ss_pred CCCcccccCCC-CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-------------CCcCCCCCCcceecceE
Confidence 56777776533 33578999999997431 236899999999865 57899999999875432
Q ss_pred CC------------------------------------------------------------CCCCCCceEEEe---ceE
Q 016833 170 DR------------------------------------------------------------CPQCKGEKVIQE---KKV 186 (382)
Q Consensus 170 ~~------------------------------------------------------------C~~C~G~g~~~~---~~~ 186 (382)
.. =..+.+...+.. ...
T Consensus 228 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~ 307 (391)
T PRK14284 228 SVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGT 307 (391)
T ss_pred EEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcE
Confidence 22 001112222321 257
Q ss_pred EEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccccceee
Q 016833 187 LEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 240 (382)
Q Consensus 187 l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~ 240 (382)
++|+||+|+++|++++|+|+|++.+ +..+|||||+|++..++.++.+...|+..
T Consensus 308 i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 362 (391)
T PRK14284 308 CRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQ 362 (391)
T ss_pred EEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999999855 35689999999999998877766655543
No 51
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.28 E-value=9.8e-12 Score=124.67 Aligned_cols=124 Identities=23% Similarity=0.459 Sum_probs=88.7
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC-------C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
+.|.|...+ .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|+|.+
T Consensus 143 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 208 (378)
T PRK14278 143 DRCHGKGTA-GDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------------PDPCHECAGDGRV 208 (378)
T ss_pred CCCcCccCC-CCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------------CCCCCCCCCceeE
Confidence 567777655 233457899999999642 1 135899999999875 5679999999987
Q ss_pred ecCCCC------------------------------------------------------------CCCCCCceEEEe--
Q 016833 166 INDKDR------------------------------------------------------------CPQCKGEKVIQE-- 183 (382)
Q Consensus 166 ~~~k~~------------------------------------------------------------C~~C~G~g~~~~-- 183 (382)
...+.. =..|.+.-.+..
T Consensus 209 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 288 (378)
T PRK14278 209 RARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAIL 288 (378)
T ss_pred ecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCC
Confidence 543322 001112222221
Q ss_pred ceEEEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccc
Q 016833 184 KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRK 233 (382)
Q Consensus 184 ~~~l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~ 233 (382)
.+.++|.||+|+++|++++|+|+|++.+ +...|||||+|++.-+..+..+
T Consensus 289 ~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~ 339 (378)
T PRK14278 289 DGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHE 339 (378)
T ss_pred CCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHH
Confidence 3678999999999999999999999854 3467999999999977654433
No 52
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.28 E-value=1.2e-11 Score=123.66 Aligned_cols=128 Identities=23% Similarity=0.466 Sum_probs=90.4
Q ss_pred ccccCcceeEEeeceeeeCCCCCCCCccC---C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecC
Q 016833 95 EDLYNGTSKKLSLSRNVICTKCKGKGSKS---G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND 168 (382)
Q Consensus 95 ee~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~ 168 (382)
-+.|.|...+- .....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|.|.+...
T Consensus 143 C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~ 207 (369)
T PRK14288 143 CESCDGTGAKD--KALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------------KTPCQACKGKTYILKD 207 (369)
T ss_pred CCCCCCcccCC--CCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------------cccCccCCCcceEEEE
Confidence 35677877653 2457899999999653 1 235899999999865 5779999999876542
Q ss_pred CCC-----CC------------------------------------------------------CCCCceEEEe--ceEE
Q 016833 169 KDR-----CP------------------------------------------------------QCKGEKVIQE--KKVL 187 (382)
Q Consensus 169 k~~-----C~------------------------------------------------------~C~G~g~~~~--~~~l 187 (382)
+.. -. .|.+.-.+.. .+.+
T Consensus 208 ~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l 287 (369)
T PRK14288 208 EEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDEL 287 (369)
T ss_pred EEEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEE
Confidence 221 00 0111111111 1468
Q ss_pred EEEeccCCCCCCEEEeCCCCCCCCCC-CCccEEEEEEEecCCccccccccc
Q 016833 188 EVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDL 237 (382)
Q Consensus 188 ~V~Ip~G~~~g~~i~~~geG~~~~g~-~~GDl~v~i~~k~h~~F~R~g~DL 237 (382)
+|.||+|+++|++++|+|+|.+.++. ..|||||+|+++.|..|+.+...|
T Consensus 288 ~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~ 338 (369)
T PRK14288 288 ELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQEL 338 (369)
T ss_pred EEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 99999999999999999999986654 469999999999998766555433
No 53
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.26 E-value=1.1e-11 Score=123.32 Aligned_cols=129 Identities=21% Similarity=0.446 Sum_probs=92.0
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccCC----------CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
..|.|.... .-.....|+.|+|+|.... ...+|+.|.|+|.++ +.+|+.|.|+|.+
T Consensus 147 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 212 (354)
T TIGR02349 147 ETCHGTGAK-PGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-------------KEPCSTCKGKGRV 212 (354)
T ss_pred CCCCCCCCC-CCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-------------CCCCCCCCCCcEe
Confidence 556776654 2233578999999996431 135899999999875 5679999999987
Q ss_pred ecCCCC----------------------CC--------------------------------------CCCCceEEE-ec
Q 016833 166 INDKDR----------------------CP--------------------------------------QCKGEKVIQ-EK 184 (382)
Q Consensus 166 ~~~k~~----------------------C~--------------------------------------~C~G~g~~~-~~ 184 (382)
...+.. .. .|.+...+. -.
T Consensus 213 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ld 292 (354)
T TIGR02349 213 KERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLD 292 (354)
T ss_pred cccceEEEEECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCC
Confidence 553332 00 011111111 11
Q ss_pred eEEEEEeccCCCCCCEEEeCCCCCCCCC-CCCccEEEEEEEecCCccccccccce
Q 016833 185 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLF 238 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~geG~~~~g-~~~GDl~v~i~~k~h~~F~R~g~DL~ 238 (382)
..++|.||+|+++|++++|+|+|++.++ ..+|||||+|++..++.|+++...++
T Consensus 293 G~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l 347 (354)
T TIGR02349 293 GDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL 347 (354)
T ss_pred ceEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 3589999999999999999999998653 46899999999999988887776554
No 54
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=1.2e-11 Score=124.32 Aligned_cols=126 Identities=23% Similarity=0.448 Sum_probs=90.0
Q ss_pred ccccCcceeEEeeceeeeCCCCCCCCccCC------CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecC
Q 016833 95 EDLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND 168 (382)
Q Consensus 95 ee~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~ 168 (382)
-..|.|...+ .-.....|+.|+|+|.... ...+|+.|+|+|.++ ..+|..|.|+|.+...
T Consensus 169 C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~~~~~ 234 (389)
T PRK14295 169 CPACSGTGAK-NGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-------------DDPCLVCKGSGRAKSS 234 (389)
T ss_pred CCCCcccccC-CCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-------------ccCCCCCCCCceEeee
Confidence 3667787765 2234578999999996431 236899999999875 5789999999987543
Q ss_pred CCC----------------------CC--------------------------------------CCCCceEEEe--ceE
Q 016833 169 KDR----------------------CP--------------------------------------QCKGEKVIQE--KKV 186 (382)
Q Consensus 169 k~~----------------------C~--------------------------------------~C~G~g~~~~--~~~ 186 (382)
+.. .. .+.+.-.+.. .+.
T Consensus 235 ~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~ 314 (389)
T PRK14295 235 RTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPP 314 (389)
T ss_pred eEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCE
Confidence 322 00 0111111111 147
Q ss_pred EEEEeccCCCCCCEEEeCCCCCCCCCCCCccEEEEEEEecCCcccccc
Q 016833 187 LEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKG 234 (382)
Q Consensus 187 l~V~Ip~G~~~g~~i~~~geG~~~~g~~~GDl~v~i~~k~h~~F~R~g 234 (382)
++|+||+|+++|++|+|+|+|++..+...|||||+|++.-+..+.-..
T Consensus 315 ~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~~Ls~~q 362 (389)
T PRK14295 315 VTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKDLSGKA 362 (389)
T ss_pred EEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCCCCCHHH
Confidence 999999999999999999999986566789999999999876544443
No 55
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.1e-11 Score=124.10 Aligned_cols=132 Identities=19% Similarity=0.406 Sum_probs=94.7
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC-------C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
..|.|...+.. .....|+.|+|+|... + ...+|+.|.|+|.++ ..+|..|.|+|.+
T Consensus 147 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 212 (374)
T PRK14293 147 ETCRGSGAKPG-TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-------------EDPCDACGGQGVK 212 (374)
T ss_pred CCCCCcCCCCC-CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-------------ccCCCCCCCCccc
Confidence 56677665532 2346899999999643 1 125899999999875 5689999999976
Q ss_pred ecCCCC----------------------CC--------------------------------------CCCCceEEEe-c
Q 016833 166 INDKDR----------------------CP--------------------------------------QCKGEKVIQE-K 184 (382)
Q Consensus 166 ~~~k~~----------------------C~--------------------------------------~C~G~g~~~~-~ 184 (382)
...+.. -. .|.+.-.+.. .
T Consensus 213 ~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ld 292 (374)
T PRK14293 213 QVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVD 292 (374)
T ss_pred ccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCC
Confidence 543221 00 1111111111 1
Q ss_pred eEEEEEeccCCCCCCEEEeCCCCCCCCCC--CCccEEEEEEEecCCccccccccceeee
Q 016833 185 KVLEVIVEKGMQNGQKITFPGEADEAPDT--VTGDIVFVLQQKEHPKFKRKGDDLFVEH 241 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~geG~~~~g~--~~GDl~v~i~~k~h~~F~R~g~DL~~~~ 241 (382)
..++|+||+|+++|++++|+|+|.+.++. ..|||||.|++..|+.|++++.+|+-++
T Consensus 293 G~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 293 GPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999999985543 5799999999999999999888777654
No 56
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=2.1e-11 Score=122.08 Aligned_cols=128 Identities=22% Similarity=0.435 Sum_probs=89.7
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccCC------CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCC
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 169 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k 169 (382)
+.|.|...+ .-.....|+.|+|+|.... ...+|+.|+|+|.++ ..+|+.|+|+|.+...+
T Consensus 154 ~~C~G~G~~-~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~~~~~~ 219 (372)
T PRK14286 154 VDCNGSGAS-KGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-------------SNPCKTCGGQGLQEKRR 219 (372)
T ss_pred CCCcCCCcC-CCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-------------cccCCCCCCCcEEecce
Confidence 567777665 2233478999999996531 236899999999875 57899999999876532
Q ss_pred CC----------------------CCC--CCCc------------------------------------eEEEe--ceEE
Q 016833 170 DR----------------------CPQ--CKGE------------------------------------KVIQE--KKVL 187 (382)
Q Consensus 170 ~~----------------------C~~--C~G~------------------------------------g~~~~--~~~l 187 (382)
.. ... -.|. -.+.. .+.+
T Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i 299 (372)
T PRK14286 220 TINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKA 299 (372)
T ss_pred EEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEE
Confidence 22 111 0111 11111 1468
Q ss_pred EEEeccCCCCCCEEEeCCCCCCCCC-CCCccEEEEEEEecCCccccccccc
Q 016833 188 EVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDL 237 (382)
Q Consensus 188 ~V~Ip~G~~~g~~i~~~geG~~~~g-~~~GDl~v~i~~k~h~~F~R~g~DL 237 (382)
+|.||+|+++|++++|+|+|.+..+ ...|||||+|++..+..++.+...|
T Consensus 300 ~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~ 350 (372)
T PRK14286 300 KMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQREL 350 (372)
T ss_pred EEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHH
Confidence 9999999999999999999998543 4579999999999887655544433
No 57
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.7e-11 Score=122.70 Aligned_cols=132 Identities=19% Similarity=0.406 Sum_probs=93.5
Q ss_pred ccccCcceeEEeeceeeeCCCCCCCCccC-------C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeE
Q 016833 95 EDLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 164 (382)
Q Consensus 95 ee~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 164 (382)
-+.|+|+...........|+.|+|+|... + ...+|+.|+|+|..+ ..+|+.|.|+|.
T Consensus 142 C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~ 208 (371)
T PRK14292 142 CEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------------TDPCTVCRGRGR 208 (371)
T ss_pred CCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------------CCCCCCCCCceE
Confidence 46778887664444468899999999654 1 125899999999865 678999999998
Q ss_pred EecCCCC-----CC-----------------------------------------------------CCCCceEEE-ece
Q 016833 165 TINDKDR-----CP-----------------------------------------------------QCKGEKVIQ-EKK 185 (382)
Q Consensus 165 ~~~~k~~-----C~-----------------------------------------------------~C~G~g~~~-~~~ 185 (382)
+...+.. -. .+.+.-.+. -..
T Consensus 209 v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG 288 (371)
T PRK14292 209 TLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDG 288 (371)
T ss_pred EeecceEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCC
Confidence 7543322 00 011111111 113
Q ss_pred EEEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCcccccccccee
Q 016833 186 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFV 239 (382)
Q Consensus 186 ~l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~ 239 (382)
..+|.||+|+++|++++|+|+|++.+ +..+|||||+|+++.|+.|+.+...|+-
T Consensus 289 ~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14292 289 PQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE 343 (371)
T ss_pred CEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999999999854 4568999999999999877766554443
No 58
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=9.3e-12 Score=124.52 Aligned_cols=131 Identities=20% Similarity=0.409 Sum_probs=92.6
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC-------C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
..|.|+..+ .-.+...|+.|+|+|... + ...+|+.|+|+|.++ ..+|..|.|+|.+
T Consensus 142 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 207 (371)
T PRK14287 142 GTCHGSGAK-PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-------------KQKCATCGGKGKV 207 (371)
T ss_pred CCCCCcccC-CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-------------cccCCCCCCeeEE
Confidence 567777655 334457899999999653 1 135899999999865 5779999999876
Q ss_pred ecCCCC---------------------C---------------------------------------CCCCCceEEEe-c
Q 016833 166 INDKDR---------------------C---------------------------------------PQCKGEKVIQE-K 184 (382)
Q Consensus 166 ~~~k~~---------------------C---------------------------------------~~C~G~g~~~~-~ 184 (382)
...+.. - ..|.+.-.+.. .
T Consensus 208 ~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ld 287 (371)
T PRK14287 208 RKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLN 287 (371)
T ss_pred eeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCC
Confidence 432211 0 00111111111 1
Q ss_pred eEEEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccccceee
Q 016833 185 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 240 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~DL~~~ 240 (382)
..++|+||+|+++|++++|+|+|.+.+ +...|||||+|++..|+.|+++...|+..
T Consensus 288 g~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 344 (371)
T PRK14287 288 GKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMRE 344 (371)
T ss_pred CCEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 448999999999999999999999854 34679999999999999888776655544
No 59
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=2.9e-11 Score=121.22 Aligned_cols=125 Identities=22% Similarity=0.437 Sum_probs=86.9
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC-------C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
+.|.|...+ .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|+|.+
T Consensus 147 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 212 (376)
T PRK14280 147 DTCHGSGAK-PGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-------------KEKCPTCHGKGKV 212 (376)
T ss_pred CCCCCcccC-CCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-------------cCCCCCCCCceEE
Confidence 567777654 223457899999999642 1 235899999999865 5779999999987
Q ss_pred ecCCCC----------------------CC--------------------------------------CCCCceEEE-ec
Q 016833 166 INDKDR----------------------CP--------------------------------------QCKGEKVIQ-EK 184 (382)
Q Consensus 166 ~~~k~~----------------------C~--------------------------------------~C~G~g~~~-~~ 184 (382)
...+.. .. .+.+.-.+. -.
T Consensus 213 ~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 292 (376)
T PRK14280 213 RKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLH 292 (376)
T ss_pred EEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCC
Confidence 543222 00 011111111 11
Q ss_pred eEEEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCcccccc
Q 016833 185 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKG 234 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g 234 (382)
..++|.||+|+++|++++|+|+|.+.. +...|||||+|++..+..++.+.
T Consensus 293 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q 343 (376)
T PRK14280 293 GKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQ 343 (376)
T ss_pred ceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHH
Confidence 458999999999999999999999854 34679999999999876544433
No 60
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=3.3e-11 Score=121.65 Aligned_cols=123 Identities=19% Similarity=0.338 Sum_probs=87.2
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccCC----------CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
..|.|...+-. ....|+.|+|+|.... ...+|+.|+|+|.++ ..+|+.|+|+|.+
T Consensus 167 ~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 231 (397)
T PRK14281 167 KECNGTGSKTG--ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-------------KDRCPACYGEGIK 231 (397)
T ss_pred CCCCCcccCCC--CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-------------CCCCCCCCCCccE
Confidence 45677765532 4578999999996521 135899999999875 5789999999987
Q ss_pred ecCCCC---------------------C---------------------------------------CCCCCceEEEe-c
Q 016833 166 INDKDR---------------------C---------------------------------------PQCKGEKVIQE-K 184 (382)
Q Consensus 166 ~~~k~~---------------------C---------------------------------------~~C~G~g~~~~-~ 184 (382)
...+.. . ..+.+.-.+.. .
T Consensus 232 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 311 (397)
T PRK14281 232 QGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLD 311 (397)
T ss_pred ecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCC
Confidence 653222 0 01111111111 1
Q ss_pred eEEEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccc
Q 016833 185 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRK 233 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~ 233 (382)
..++|.||+|+++|++++|+|+|.+.+ +...|||||+|++.-+..++.+
T Consensus 312 g~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~ 361 (397)
T PRK14281 312 GAVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQ 361 (397)
T ss_pred ccEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHH
Confidence 458999999999999999999999854 3467999999999977654433
No 61
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=3.7e-11 Score=120.58 Aligned_cols=126 Identities=23% Similarity=0.461 Sum_probs=86.7
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC-------C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
+.|.|...+-. .....|+.|+|+|... + ...+|+.|+|+|.++ ..+|+.|+|+|.+
T Consensus 150 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~~ 215 (380)
T PRK14276 150 HTCNGSGAKPG-TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-------------KEPCQTCHGTGHE 215 (380)
T ss_pred CCCcCcccCCC-CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-------------cCCCCCCCCceEE
Confidence 56777765522 3356899999999652 1 135899999999865 5779999999976
Q ss_pred ecCCCC----------------------CC--------------------------------------CCCCceEEEe-c
Q 016833 166 INDKDR----------------------CP--------------------------------------QCKGEKVIQE-K 184 (382)
Q Consensus 166 ~~~k~~----------------------C~--------------------------------------~C~G~g~~~~-~ 184 (382)
...+.. .. .+.+.-.+.. .
T Consensus 216 ~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld 295 (380)
T PRK14276 216 KQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVH 295 (380)
T ss_pred EEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCC
Confidence 432221 00 0001111111 1
Q ss_pred eEEEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccccccc
Q 016833 185 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGD 235 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g~ 235 (382)
..++|.||+|+++|++++|+|+|++.+ +..+|||||+|++..+..+..+..
T Consensus 296 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~ 347 (380)
T PRK14276 296 GDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQK 347 (380)
T ss_pred CcEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHH
Confidence 447999999999999999999999865 346799999999998875544443
No 62
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=8e-11 Score=118.23 Aligned_cols=125 Identities=25% Similarity=0.447 Sum_probs=85.6
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC-------C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
..|.|...+ .-.....|+.|+|+|... + ...+|+.|+|+|.++ ..+|..|+|+|.+
T Consensus 152 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 217 (380)
T PRK14297 152 ETCNGTGAK-PGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-------------EDPCNKCHGKGKV 217 (380)
T ss_pred CCccccccc-CCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-------------CCCCCCCCCCeEE
Confidence 456776655 223357899999999652 1 236899999999865 5789999999965
Q ss_pred ecCCCC-----CC-------------------------------------------------------CCCCceEEE-ec
Q 016833 166 INDKDR-----CP-------------------------------------------------------QCKGEKVIQ-EK 184 (382)
Q Consensus 166 ~~~k~~-----C~-------------------------------------------------------~C~G~g~~~-~~ 184 (382)
...+.. -. .+.+.-.+. -.
T Consensus 218 ~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ld 297 (380)
T PRK14297 218 RKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVD 297 (380)
T ss_pred EeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCC
Confidence 432211 00 011111111 11
Q ss_pred eEEEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCcccccc
Q 016833 185 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKG 234 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g 234 (382)
..++|.||+|+++|++++|+|+|.+.. +...|||||+|++.-+..+..+.
T Consensus 298 g~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q 348 (380)
T PRK14297 298 GEVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQ 348 (380)
T ss_pred CcEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHH
Confidence 458999999999999999999999754 34679999999999876544433
No 63
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=6.1e-11 Score=119.36 Aligned_cols=122 Identities=21% Similarity=0.417 Sum_probs=85.2
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC-------CC---cccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------GA---SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~~---~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
..|.|.... .-.....|+.|+|+|... +. ..+|+.|+|+|.++ ...|+.|+|+|.+
T Consensus 158 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 223 (386)
T PRK14289 158 SHCHGTGAE-GNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------------KKKCKKCGGEGIV 223 (386)
T ss_pred CCCCCCCCC-CCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------------CcCCCCCCCCcEE
Confidence 456666544 224457899999999763 11 25799999999865 5779999999976
Q ss_pred ecCCCC----------------------C--------------------------------------CCCCCceEEEe-c
Q 016833 166 INDKDR----------------------C--------------------------------------PQCKGEKVIQE-K 184 (382)
Q Consensus 166 ~~~k~~----------------------C--------------------------------------~~C~G~g~~~~-~ 184 (382)
...+.. . ..+.+...+.. .
T Consensus 224 ~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ld 303 (386)
T PRK14289 224 YGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTID 303 (386)
T ss_pred eeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCC
Confidence 543222 0 01111111111 2
Q ss_pred eEEEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCccc
Q 016833 185 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFK 231 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~ 231 (382)
..++|.||+|+++|++++|+|+|.+.+ +..+|||||.|+++-+..++
T Consensus 304 g~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~ 351 (386)
T PRK14289 304 GKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLS 351 (386)
T ss_pred ceEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCC
Confidence 458999999999999999999999854 35689999999998775433
No 64
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=1.4e-10 Score=116.41 Aligned_cols=125 Identities=22% Similarity=0.402 Sum_probs=86.7
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC-------C---CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
..|+|....- -.....|+.|+|+|... + ...+|+.|+|+|..+ ..+|..|+|+|.+
T Consensus 150 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 215 (378)
T PRK14283 150 PVCNGSRAEP-GSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-------------EKPCSNCHGKGVV 215 (378)
T ss_pred CCCCccccCC-CCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-------------CCCCCCCCCceee
Confidence 5677776542 23456899999999753 1 135899999999865 5779999999986
Q ss_pred ecCCCC----------------------CC--------------------------------------CCCCceEEE-ec
Q 016833 166 INDKDR----------------------CP--------------------------------------QCKGEKVIQ-EK 184 (382)
Q Consensus 166 ~~~k~~----------------------C~--------------------------------------~C~G~g~~~-~~ 184 (382)
...+.. .. .+.+...+. -.
T Consensus 216 ~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tld 295 (378)
T PRK14283 216 RETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTID 295 (378)
T ss_pred ccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCC
Confidence 543222 00 011111121 12
Q ss_pred eEEEEEeccCCCCCCEEEeCCCCCCCC-CCCCccEEEEEEEecCCcccccc
Q 016833 185 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKG 234 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~geG~~~~-g~~~GDl~v~i~~k~h~~F~R~g 234 (382)
..++|.||+|+++|++++|+|+|.+.+ +...|||||+|++.-+...+.+.
T Consensus 296 G~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q 346 (378)
T PRK14283 296 GPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQ 346 (378)
T ss_pred ceEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHH
Confidence 368999999999999999999999754 34679999999998776544443
No 65
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.12 E-value=1.9e-10 Score=116.62 Aligned_cols=119 Identities=19% Similarity=0.299 Sum_probs=83.8
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC-----C-----CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEE
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS-----G-----ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 165 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-----~-----~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 165 (382)
..|+|+..+- .....|+.|+|+|... + ...+|+.|+|+|.++. ...+|+.|+|+|.+
T Consensus 154 ~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~-----------~~~~C~~C~G~g~v 220 (421)
T PTZ00037 154 ANCEGHGGPK--DAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP-----------ESKKCKNCSGKGVK 220 (421)
T ss_pred cccCCCCCCC--CCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc-----------ccccCCcCCCccee
Confidence 5677877542 3457899999999632 1 2358999999998762 24789999999987
Q ss_pred ecCCCC-----CC------------------------------------------------------CCCCceEEEe--c
Q 016833 166 INDKDR-----CP------------------------------------------------------QCKGEKVIQE--K 184 (382)
Q Consensus 166 ~~~k~~-----C~------------------------------------------------------~C~G~g~~~~--~ 184 (382)
...+.. -. .|.+.-.+.. .
T Consensus 221 ~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG 300 (421)
T PTZ00037 221 KTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDG 300 (421)
T ss_pred eeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCC
Confidence 543222 00 1111111110 1
Q ss_pred eEEEEEeccC--CCCCCEEEeCCCCCCCCC--CCCccEEEEEEEecC
Q 016833 185 KVLEVIVEKG--MQNGQKITFPGEADEAPD--TVTGDIVFVLQQKEH 227 (382)
Q Consensus 185 ~~l~V~Ip~G--~~~g~~i~~~geG~~~~g--~~~GDl~v~i~~k~h 227 (382)
+.|+|+||+| +++|++++|+|+|.+..+ ...|||||+|+|.-+
T Consensus 301 ~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P 347 (421)
T PTZ00037 301 RKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFP 347 (421)
T ss_pred CeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcC
Confidence 5689999999 999999999999998543 357999999999877
No 66
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=1e-10 Score=117.09 Aligned_cols=126 Identities=21% Similarity=0.382 Sum_probs=87.0
Q ss_pred ccccCcceeEEeeceeeeCCCCCCCCccCC----------CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeE
Q 016833 95 EDLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 164 (382)
Q Consensus 95 ee~~~G~~~~i~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 164 (382)
-..|.|+..+-. .....|+.|+|+|.... ...+|+.|+|+|.++ ..+|+.|+|+|.
T Consensus 152 C~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~ 217 (372)
T PRK14296 152 CSKCFGSGAESN-SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-------------KNKCKNCKGKGK 217 (372)
T ss_pred cCCCCCCccCCC-CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-------------cccccCCCCceE
Confidence 366778776522 34578999999997531 125899999999875 678999999997
Q ss_pred EecCCCC----------------------CC---------------------------------------CCCCceEEE-
Q 016833 165 TINDKDR----------------------CP---------------------------------------QCKGEKVIQ- 182 (382)
Q Consensus 165 ~~~~k~~----------------------C~---------------------------------------~C~G~g~~~- 182 (382)
+...+.. .. .|.++-.+.
T Consensus 218 v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~t 297 (372)
T PRK14296 218 YLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKT 297 (372)
T ss_pred EEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeC
Confidence 6442222 00 011111111
Q ss_pred eceEEEEEeccCCCCCCEEEeCCCCCCCC--CCCCccEEEEEEEecCCcccccc
Q 016833 183 EKKVLEVIVEKGMQNGQKITFPGEADEAP--DTVTGDIVFVLQQKEHPKFKRKG 234 (382)
Q Consensus 183 ~~~~l~V~Ip~G~~~g~~i~~~geG~~~~--g~~~GDl~v~i~~k~h~~F~R~g 234 (382)
-...++|.||+++++|++++|+|+|.+.. ....|||||+|++.-+..+..+.
T Consensus 298 ldG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q 351 (372)
T PRK14296 298 LDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKE 351 (372)
T ss_pred CCCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 01348999999999999999999998732 33579999999999876554443
No 67
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=2.4e-10 Score=114.89 Aligned_cols=118 Identities=25% Similarity=0.460 Sum_probs=82.9
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccCC------CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCC
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 169 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k 169 (382)
..|+|...+ .-.....|+.|+|+|.... ...+|+.|+|+|. + ..+|+.|+|.|.+...+
T Consensus 160 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~-------------~~~C~~C~G~g~v~~~~ 224 (382)
T PRK14291 160 EACGGTGYD-PGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-L-------------REPCSKCNGRGLVIKKE 224 (382)
T ss_pred CCCccccCC-CCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE-E-------------ccCCCCCCCCceEEeee
Confidence 456776654 2234578999999996531 2368999999995 2 46799999999765432
Q ss_pred CC-----CC-------------------------------------------------------CCCCceEEEe--ceEE
Q 016833 170 DR-----CP-------------------------------------------------------QCKGEKVIQE--KKVL 187 (382)
Q Consensus 170 ~~-----C~-------------------------------------------------------~C~G~g~~~~--~~~l 187 (382)
.. -. .+.+...+.. .+.+
T Consensus 225 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l 304 (382)
T PRK14291 225 TIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKE 304 (382)
T ss_pred EEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEE
Confidence 22 00 0111111111 1568
Q ss_pred EEEeccCCCCCCEEEeCCCCCCCCC-CCCccEEEEEEEecCC
Q 016833 188 EVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHP 228 (382)
Q Consensus 188 ~V~Ip~G~~~g~~i~~~geG~~~~g-~~~GDl~v~i~~k~h~ 228 (382)
+|.||+|+++|++|+|+|+|++.++ ..+|||||+|++.-+.
T Consensus 305 ~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 305 KVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred EEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 9999999999999999999998653 4679999999998775
No 68
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=6e-09 Score=101.10 Aligned_cols=86 Identities=27% Similarity=0.322 Sum_probs=71.6
Q ss_pred cccccccceeeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 016833 230 FKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPE 309 (382)
Q Consensus 230 F~R~g~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~ 309 (382)
+.|+|.||++++.|||.||++|+++.| +++|+.+.|+|||| +++|++++++|+|++. |||||+|.|.-++
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G--~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~ 194 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPG--VREGQVIRLAGKGRQG-------GDLYLVVRLLPHP 194 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCC--cCCCcEEEECCCCCCC-------CCEEEEEEEcCCC
Confidence 457899999999999999999999998 78998899999999 8999999999999862 9999999998666
Q ss_pred CCCH--------HHHHHHHHhCCC
Q 016833 310 SLSP--------DQCKMLETVLPP 325 (382)
Q Consensus 310 ~l~~--------~~~~~l~~~lp~ 325 (382)
.+.. -.+.+.+.++..
T Consensus 195 ~f~R~G~DL~~~~~Isl~eAl~G~ 218 (291)
T PRK14299 195 VFRLEGDDLYATVDVPAPIAVVGG 218 (291)
T ss_pred CeEEECCEEEEEEecCHHHHhCCC
Confidence 5332 234555555553
No 69
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.85 E-value=5.2e-09 Score=86.49 Aligned_cols=60 Identities=28% Similarity=0.655 Sum_probs=49.9
Q ss_pred eeeCCCCCCCCccCCCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEe
Q 016833 110 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQE 183 (382)
Q Consensus 110 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~ 183 (382)
.+.|..|+|+|.. +|+.|+|+|.+...+ ++ .++++.+|+.|+|+|+. .|+.|+|++++..
T Consensus 41 ~v~C~~C~GsG~~-----~C~~C~G~G~v~~~~--~g--~~q~~~~C~~C~G~Gk~-----~C~~C~G~G~~~~ 100 (111)
T PLN03165 41 TQPCFPCSGTGAQ-----VCRFCVGSGNVTVEL--GG--GEKEVSKCINCDGAGSL-----TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCCCCCCc-----CCCCCcCcCeEEEEe--CC--cEEEEEECCCCCCccee-----eCCCCCCCEEEee
Confidence 5799999999973 899999999987443 43 35778999999999974 4999999998754
No 70
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.68 E-value=5.6e-08 Score=95.01 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=62.8
Q ss_pred cccccceeeeccCHHHHhCCCEEEE----EecC--C-------cEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCc
Q 016833 232 RKGDDLFVEHTLSLTEALCGFQFVI----THLD--G-------RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGK 298 (382)
Q Consensus 232 R~g~DL~~~~~I~l~eAl~G~~~~i----~tld--G-------~~l~i~~p~g~vi~~g~~~~i~g~GmP~~~~~~~~Gd 298 (382)
|+|.||++++.|+|.||+.|+...| ++++ | +.+.|.|||| +++|++++++|+|+|.. +...+||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~-~~~~~GD 191 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAG--VGNGQRIRLKGQGTPGE-NGGPNGD 191 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCC--CcCCcEEEEecCCcCCC-CCCCCcc
Confidence 5689999999999999999995544 4454 3 4689999999 89999999999999964 2346899
Q ss_pred EEEEEEEECCCC
Q 016833 299 LYIHFTVDFPES 310 (382)
Q Consensus 299 L~i~~~V~~P~~ 310 (382)
|||+|+|. |..
T Consensus 192 l~v~i~v~-ph~ 202 (306)
T PRK10266 192 LWLVIHIA-PHP 202 (306)
T ss_pred EEEEEEEc-CCC
Confidence 99999999 755
No 71
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.63 E-value=7.3e-09 Score=111.32 Aligned_cols=55 Identities=25% Similarity=0.533 Sum_probs=43.6
Q ss_pred CCCCCCcchhhhcCCCCC------------------------------------ce-eccCccccccccccchhhhhCCC
Q 016833 6 PKKSDNTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQYGEDALKEGM 48 (382)
Q Consensus 6 ~~~~~~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~ 48 (382)
..|+.+++||+||||+++ || |||||++|+.||+||..|+...
T Consensus 567 t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~~- 645 (1136)
T PTZ00341 567 TIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKGV- 645 (1136)
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCCC-
Confidence 557788999999999999 99 9999999999999999887532
Q ss_pred CCCCCCCCchhhhhcccC
Q 016833 49 GGGGGAHDPFDIFQSFFG 66 (382)
Q Consensus 49 ~~~~~~~~~~d~F~~~Fg 66 (382)
+..||.-+| .+||
T Consensus 646 ----~~iDP~~Ff-mlFg 658 (1136)
T PTZ00341 646 ----NFIHPSIFY-LLAS 658 (1136)
T ss_pred ----CccCHHHHH-HHhh
Confidence 234555434 4555
No 72
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.41 E-value=2.4e-07 Score=72.71 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=36.2
Q ss_pred eEEEEEeccCCCCCCEEEeCCCCCCCC-C-CCCccEEEEEEEecCCcccc
Q 016833 185 KVLEVIVEKGMQNGQKITFPGEADEAP-D-TVTGDIVFVLQQKEHPKFKR 232 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~geG~~~~-g-~~~GDl~v~i~~k~h~~F~R 232 (382)
+.++|.||+|+++|+.++++|+|.+.. + ...|||||.+++.-+..++.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~ 76 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSP 76 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence 467899999999999999999999743 3 37999999999987765543
No 73
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=5e-08 Score=97.21 Aligned_cols=37 Identities=51% Similarity=0.943 Sum_probs=34.7
Q ss_pred CCCcchhhhcCCCCC----------------------------------------ce-eccCccccccccccchhhhh
Q 016833 9 SDNTKYYEILGVSKK----------------------------------------RF-VLSDPEKREIYDQYGEDALK 45 (382)
Q Consensus 9 ~~~~~~Y~iLgv~~~----------------------------------------AY-vLsD~~KR~~YD~~G~~g~~ 45 (382)
..+.+||.+|+|+|+ || |||||.||++||.||+.|++
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 356799999999999 99 99999999999999999998
No 74
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.37 E-value=7.4e-08 Score=93.23 Aligned_cols=38 Identities=55% Similarity=0.908 Sum_probs=32.4
Q ss_pred CCCCCCcchhhhcCCCCC----------------------------------------ce-eccCccccccccccchhhh
Q 016833 6 PKKSDNTKYYEILGVSKK----------------------------------------RF-VLSDPEKREIYDQYGEDAL 44 (382)
Q Consensus 6 ~~~~~~~~~Y~iLgv~~~----------------------------------------AY-vLsD~~KR~~YD~~G~~g~ 44 (382)
.+-+..+|||+||||.+| |- |||||+||+.||. |++-+
T Consensus 388 kkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPL 466 (504)
T KOG0624|consen 388 KKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPL 466 (504)
T ss_pred HHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCC
Confidence 345678899999999999 77 9999999999998 66554
No 75
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1e-06 Score=86.00 Aligned_cols=107 Identities=22% Similarity=0.486 Sum_probs=81.1
Q ss_pred eeCCCCCCCCccCC-----------CcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCC--------
Q 016833 111 VICTKCKGKGSKSG-----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDR-------- 171 (382)
Q Consensus 111 ~~C~~C~G~G~~~~-----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~-------- 171 (382)
..|+.|.|+|.+.. ....|..|+|+|..+ .....|+.|.|++.+-..+..
T Consensus 144 ~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~-----------~~kd~C~~C~G~~~v~~kkil~v~V~~g~ 212 (337)
T KOG0712|consen 144 PKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETI-----------SLKDRCKTCSGAKVVREKKILEVHVEPGM 212 (337)
T ss_pred CCCCCCCCCCceeEEEeccccccccceeEeccCCCccccc-----------cccccCcccccchhhhhhheeeccccCCC
Confidence 37999999998742 125799999999864 237889999999876543222
Q ss_pred ---------------------------------------------------CCCCCCceEEE--eceEEEEEeccC--CC
Q 016833 172 ---------------------------------------------------CPQCKGEKVIQ--EKKVLEVIVEKG--MQ 196 (382)
Q Consensus 172 ---------------------------------------------------C~~C~G~g~~~--~~~~l~V~Ip~G--~~ 196 (382)
=..|.+..+++ .-+.|++.++|| +.
T Consensus 213 ~~~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~ 292 (337)
T KOG0712|consen 213 PHGQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVIS 292 (337)
T ss_pred cccceeeeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeC
Confidence 12444444443 347899999999 99
Q ss_pred CCCEEEeCCCCCCCCCCCCccEEEEEEEecCC
Q 016833 197 NGQKITFPGEADEAPDTVTGDIVFVLQQKEHP 228 (382)
Q Consensus 197 ~g~~i~~~geG~~~~g~~~GDl~v~i~~k~h~ 228 (382)
+|+++++.|+|++..+...|||||.+.|+-++
T Consensus 293 ~~~~~~v~~~gmp~~~~~~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 293 PGDTKRVEGEGMPIFRNPKGDLYIKFEVKFPK 324 (337)
T ss_pred hhHEEeecCCCcccccCCCCcEEEEEEEEcCC
Confidence 99999999999996655599999999999776
No 76
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=6.2e-08 Score=93.34 Aligned_cols=55 Identities=36% Similarity=0.656 Sum_probs=45.8
Q ss_pred CCCCcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhhCCCC
Q 016833 8 KSDNTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALKEGMG 49 (382)
Q Consensus 8 ~~~~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~ 49 (382)
|+.++|||+||||+.+ || ||+|+++|+.||.+|..+...
T Consensus 1 M~~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~--- 77 (296)
T KOG0691|consen 1 MVKDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA--- 77 (296)
T ss_pred CcccchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc---
Confidence 6679999999999988 99 999999999999998766432
Q ss_pred CCCCCCCchhhhhcccCC
Q 016833 50 GGGGAHDPFDIFQSFFGG 67 (382)
Q Consensus 50 ~~~~~~~~~d~F~~~Fgg 67 (382)
.+..++.++|...|++
T Consensus 78 --~~~~d~~~~~r~~f~~ 93 (296)
T KOG0691|consen 78 --QGREDQADGFRKKFGS 93 (296)
T ss_pred --hhhhhHHHHHHHHhhh
Confidence 1345778889988874
No 77
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.32 E-value=8.4e-07 Score=80.01 Aligned_cols=51 Identities=22% Similarity=0.454 Sum_probs=46.4
Q ss_pred cccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEeC
Q 016833 153 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFP 204 (382)
Q Consensus 153 ~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~~ 204 (382)
+.+|+.|+|+|+++..+++|+.|+|.|.++.++.+.+++ .|+.+|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 567899999999888778999999999999999999999 999999999885
No 78
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.8e-06 Score=77.29 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=45.0
Q ss_pred EEeccCCCCCCEEEeCCCCCCCCCCCCccEEEEEEEecCCccccccccc
Q 016833 189 VIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDL 237 (382)
Q Consensus 189 V~Ip~G~~~g~~i~~~geG~~~~g~~~GDl~v~i~~k~h~~F~R~g~DL 237 (382)
+.++.++..+..+++.+++...+ ...++.+..+..++|+.|...++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (237)
T COG2214 180 STIKAGALEGKALRLKGLLKSAR-GALGKARLKELSKRHPPFALEGDDK 227 (237)
T ss_pred ccCCcccccCceeeecccCCcCC-CCcccceeeeeccCCCCccccCCcc
Confidence 78999999999999999998766 7789999999999999999999999
No 79
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=7.4e-07 Score=83.65 Aligned_cols=38 Identities=45% Similarity=0.865 Sum_probs=34.1
Q ss_pred CCCCcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhhhh
Q 016833 8 KSDNTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDALK 45 (382)
Q Consensus 8 ~~~~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g~~ 45 (382)
.+..-+||+|||++++ || |||||.||..||.||+.++.
T Consensus 27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 3446689999999999 99 99999999999999998875
No 80
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=6.1e-06 Score=81.79 Aligned_cols=55 Identities=49% Similarity=0.944 Sum_probs=42.4
Q ss_pred CCCCCcchhhhcCCCCC--------------------------------------ce-eccCccccccccccchhhhhCC
Q 016833 7 KKSDNTKYYEILGVSKK--------------------------------------RF-VLSDPEKREIYDQYGEDALKEG 47 (382)
Q Consensus 7 ~~~~~~~~Y~iLgv~~~--------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g 47 (382)
+|++.+|||.||||+++ || |||||.||..||. |.+ +...
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds-g~d-le~~ 445 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS-GQD-LEEV 445 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc-ccc-hhhh
Confidence 36778999999999998 99 9999999999997 332 2221
Q ss_pred CCCCCCCCCchhhhhcc
Q 016833 48 MGGGGGAHDPFDIFQSF 64 (382)
Q Consensus 48 ~~~~~~~~~~~d~F~~~ 64 (382)
. +++++++|+++|..|
T Consensus 446 ~-~~~a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 446 G-SGGAGFDPFNIFRAF 461 (486)
T ss_pred c-CCCcCcChhhhhhhc
Confidence 1 223567899999887
No 81
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.79 E-value=1.2e-05 Score=82.38 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=7.1
Q ss_pred HHHHHHHhCCCCC
Q 016833 315 QCKMLETVLPPRT 327 (382)
Q Consensus 315 ~~~~l~~~lp~~~ 327 (382)
-+..+++.|..+.
T Consensus 296 Vr~rid~ald~~A 308 (715)
T COG1107 296 VRKRIDEALDRRA 308 (715)
T ss_pred HHHHHHHHHhhcc
Confidence 3555666665443
No 82
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.72 E-value=1.3e-05 Score=60.49 Aligned_cols=53 Identities=34% Similarity=0.831 Sum_probs=34.8
Q ss_pred cCcceeEEeeceeeeCCCCCCCCccCC----------CcccCCCCCcccEEEEEEecCCccceeecccCCCCccee
Q 016833 98 YNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 163 (382)
Q Consensus 98 ~~G~~~~i~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G 163 (382)
++|...+ .-.....|+.|+|+|.... ...+|+.|+|+|.++ ...+|+.|+|.|
T Consensus 4 C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i------------~~~~C~~C~G~g 66 (66)
T PF00684_consen 4 CNGTGAK-PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII------------EKDPCKTCKGSG 66 (66)
T ss_dssp CTTTSB--STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-------------TSSB-SSSTTSS
T ss_pred CCCcccC-CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE------------CCCCCCCCCCcC
Confidence 4455543 3345679999999998642 236899999999864 268999999986
No 83
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=5.3e-06 Score=76.32 Aligned_cols=32 Identities=44% Similarity=0.908 Sum_probs=29.1
Q ss_pred CCcchhhhcCCCCC---------------------------------------ce-eccCccccccccccch
Q 016833 10 DNTKYYEILGVSKK---------------------------------------RF-VLSDPEKREIYDQYGE 41 (382)
Q Consensus 10 ~~~~~Y~iLgv~~~---------------------------------------AY-vLsD~~KR~~YD~~G~ 41 (382)
+.+|+|+||||.++ || ||||++||++||+-|.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 34499999999999 99 9999999999999875
No 84
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=7.5e-05 Score=71.55 Aligned_cols=60 Identities=33% Similarity=0.840 Sum_probs=43.9
Q ss_pred eeeCCCCCCCCccC--------------------CCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCC
Q 016833 110 NVICTKCKGKGSKS--------------------GASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 169 (382)
Q Consensus 110 ~~~C~~C~G~G~~~--------------------~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k 169 (382)
...|+.|+|.|..+ +....|..|+|+|. .+|++|+|+|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~----------------~~C~tC~grG~----- 256 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI----------------KECHTCKGRGK----- 256 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc----------------ccCCcccCCCC-----
Confidence 47799999999432 12245777777774 57999999886
Q ss_pred CCCCCCCCceEEEeceEEEEE
Q 016833 170 DRCPQCKGEKVIQEKKVLEVI 190 (382)
Q Consensus 170 ~~C~~C~G~g~~~~~~~l~V~ 190 (382)
.+|.+|.|.|-+..-..+.|.
T Consensus 257 k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 257 KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred cccccccCccceeeeEEEEEE
Confidence 689999999887776666665
No 85
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=3.2e-05 Score=77.53 Aligned_cols=38 Identities=42% Similarity=0.759 Sum_probs=33.1
Q ss_pred CCCcchhhhcCCCCC--------------------------------------ce-eccCccccccccccchhhhhC
Q 016833 9 SDNTKYYEILGVSKK--------------------------------------RF-VLSDPEKREIYDQYGEDALKE 46 (382)
Q Consensus 9 ~~~~~~Y~iLgv~~~--------------------------------------AY-vLsD~~KR~~YD~~G~~g~~~ 46 (382)
.+.+.||+||||+++ || |||||+.|+-||..-+.-|.+
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~ 81 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRG 81 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcC
Confidence 356799999999998 99 999999999999987766654
No 86
>PHA03102 Small T antigen; Reviewed
Probab=97.45 E-value=2.6e-05 Score=68.33 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=41.3
Q ss_pred CCcchhhhcCCCCC-----------------------------------ce-eccCccccccccccchhhhhCCCCCCCC
Q 016833 10 DNTKYYEILGVSKK-----------------------------------RF-VLSDPEKREIYDQYGEDALKEGMGGGGG 53 (382)
Q Consensus 10 ~~~~~Y~iLgv~~~-----------------------------------AY-vLsD~~KR~~YD~~G~~g~~~g~~~~~~ 53 (382)
....+|++|||+++ || ||+|+.+|..||.+|++.....
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~------ 76 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE------ 76 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcccccc------
Confidence 34579999999986 99 9999999999999998654321
Q ss_pred CCCchhhhhcccCC
Q 016833 54 AHDPFDIFQSFFGG 67 (382)
Q Consensus 54 ~~~~~d~F~~~Fgg 67 (382)
...+.++|.++||+
T Consensus 77 ~~~~~~~f~~~fg~ 90 (153)
T PHA03102 77 EDVPSGYVGATFGD 90 (153)
T ss_pred cccHHHHhhhhcCC
Confidence 12377889988874
No 87
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=97.43 E-value=1.7e-05 Score=58.91 Aligned_cols=14 Identities=57% Similarity=1.132 Sum_probs=13.7
Q ss_pred ce-eccCcccccccc
Q 016833 24 RF-VLSDPEKREIYD 37 (382)
Q Consensus 24 AY-vLsD~~KR~~YD 37 (382)
|| +|+||.+|+.||
T Consensus 50 Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 50 AYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHHSHHHHHHHH
T ss_pred HHHHhCCHHHHHhcC
Confidence 99 999999999998
No 88
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.42 E-value=0.00061 Score=72.72 Aligned_cols=93 Identities=13% Similarity=-0.014 Sum_probs=69.1
Q ss_pred CccccccccceeeeccCHHHHhCCCEEEEEe----c--CC-------cEEEEEeCCCccccCCcEEEEcCCCCCCCCCCC
Q 016833 228 PKFKRKGDDLFVEHTLSLTEALCGFQFVITH----L--DG-------RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF 294 (382)
Q Consensus 228 ~~F~R~g~DL~~~~~I~l~eAl~G~~~~i~t----l--dG-------~~l~i~~p~g~vi~~g~~~~i~g~GmP~~~~~~ 294 (382)
+.|-...-||.+.+.|+|.++..|++.+|+. + +| +.|.|.||+| ++.|+.++++|+|-... +
T Consensus 650 ~~~~~~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~G~ktvkE~ktLeVkIPpG--VkdGqkIRf~GeGDegp---g 724 (871)
T TIGR03835 650 PNLDETNVNLVYEEEVPQILFFNNQIKEIKYTRHTVDGNTESTTNEAITLEIQLPIT--SQLNISAIFKGFGHDFG---N 724 (871)
T ss_pred CCccccccceEEecccCHHHHhCCCeEEEEEEEeeccCCCcceeeeeEEEEEecCCC--CCCCCEEEeccccCCCC---C
Confidence 3444556789999999999999999988832 2 22 3689999999 89999999999998642 2
Q ss_pred CCCcEEEEEEEECCCCCCH--------HHHHHHHHhCCC
Q 016833 295 MRGKLYIHFTVDFPESLSP--------DQCKMLETVLPP 325 (382)
Q Consensus 295 ~~GdL~i~~~V~~P~~l~~--------~~~~~l~~~lp~ 325 (382)
..|||||.|.|.-...+.. -.+.+.+.||..
T Consensus 725 g~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGg 763 (871)
T TIGR03835 725 GCGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGG 763 (871)
T ss_pred CCCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCC
Confidence 2499999999885454332 235666666654
No 89
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.00075 Score=69.64 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=13.6
Q ss_pred eccCHHHHh---CCCEEEEEecCCcEEEEEeCCC
Q 016833 241 HTLSLTEAL---CGFQFVITHLDGRQLLIKSQPG 271 (382)
Q Consensus 241 ~~I~l~eAl---~G~~~~i~tldG~~l~i~~p~g 271 (382)
++.++..+| .|-++.|. |..+.|+..+|
T Consensus 200 ~~r~~i~~id~~ig~tV~I~---GeV~qikqT~G 230 (715)
T COG1107 200 LPRTLIDDLDEMIGKTVRIE---GEVTQIKQTSG 230 (715)
T ss_pred cccccHHHHHhhcCceEEEE---EEEEEEEEcCC
Confidence 344444444 55555543 55555554443
No 90
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.65 E-value=0.0014 Score=54.38 Aligned_cols=49 Identities=33% Similarity=0.759 Sum_probs=37.5
Q ss_pred cccCcceeEEeeceeeeCCCCCCCCccC----C-C--cccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEec
Q 016833 96 DLYNGTSKKLSLSRNVICTKCKGKGSKS----G-A--SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 167 (382)
Q Consensus 96 e~~~G~~~~i~~~r~~~C~~C~G~G~~~----~-~--~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 167 (382)
..++|... ..|+.|+|+|... + . ..+|+.|+|+|.. .|+.|.|+|.+.+
T Consensus 45 ~~C~GsG~-------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~----------------~C~~C~G~G~~~~ 100 (111)
T PLN03165 45 FPCSGTGA-------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL----------------TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCC-------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee----------------eCCCCCCCEEEee
Confidence 66777765 2799999999753 1 1 2589999999952 3999999998754
No 91
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=96.32 E-value=0.00081 Score=60.01 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=14.2
Q ss_pred ce-eccCccccccccc
Q 016833 24 RF-VLSDPEKREIYDQ 38 (382)
Q Consensus 24 AY-vLsD~~KR~~YD~ 38 (382)
|| ||+||.+|+.|+-
T Consensus 56 AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 56 AYSTLKDALKRAEYML 71 (166)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 99 9999999999975
No 92
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=96.30 E-value=0.00094 Score=59.89 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=14.2
Q ss_pred ce-eccCccccccccc
Q 016833 24 RF-VLSDPEKREIYDQ 38 (382)
Q Consensus 24 AY-vLsD~~KR~~YD~ 38 (382)
|| ||+||.+|+.|+-
T Consensus 57 AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 57 AYQTLKHPLKRAEYLL 72 (171)
T ss_pred HHHHHCChhHHHHHHH
Confidence 99 9999999999984
No 93
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.004 Score=60.01 Aligned_cols=76 Identities=29% Similarity=0.720 Sum_probs=43.8
Q ss_pred ccccCcceeEEeece---eeeCCCCCCCCccCCCcccCCCCCcccEE--------EEEEecC-CccceeecccCCCCcce
Q 016833 95 EDLYNGTSKKLSLSR---NVICTKCKGKGSKSGASMKCSGCQGSGMK--------VSIRHLG-PSMIQQMQHPCNECKGT 162 (382)
Q Consensus 95 ee~~~G~~~~i~~~r---~~~C~~C~G~G~~~~~~~~C~~C~G~G~~--------~~~~~~g-pg~~~~~~~~C~~C~G~ 162 (382)
--++.|-+..+.++. ...|..|.|.| ...|+.|+|.|.- --..-.| |-----....|..|+|+
T Consensus 169 p~mf~~~~~~~~vphs~~v~~ch~c~gRG-----~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~ 243 (406)
T KOG2813|consen 169 PGMFSGVAHPAVVPHSMIVTFCHACLGRG-----AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGR 243 (406)
T ss_pred CCcccccccceeccchHhhhhhhcccCCC-----ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCC
Confidence 345555555554443 36799999999 4689999999931 1111111 00000113456677777
Q ss_pred eEEecCCCCCCCCCCceE
Q 016833 163 GETINDKDRCPQCKGEKV 180 (382)
Q Consensus 163 G~~~~~k~~C~~C~G~g~ 180 (382)
|. ..|.+|+|+|.
T Consensus 244 G~-----~~C~tC~grG~ 256 (406)
T KOG2813|consen 244 GI-----KECHTCKGRGK 256 (406)
T ss_pred Cc-----ccCCcccCCCC
Confidence 65 56777777664
No 94
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=95.91 E-value=0.0019 Score=58.15 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=14.3
Q ss_pred ce-eccCccccccccc
Q 016833 24 RF-VLSDPEKREIYDQ 38 (382)
Q Consensus 24 AY-vLsD~~KR~~YD~ 38 (382)
|| +|+||.+|+.|+-
T Consensus 62 AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 62 AYQTLRDPLKRARYLL 77 (176)
T ss_pred HHHHhCChhhHHHHHH
Confidence 99 9999999999994
No 95
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=95.76 E-value=0.0024 Score=57.30 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=14.3
Q ss_pred ce-eccCccccccccc
Q 016833 24 RF-VLSDPEKREIYDQ 38 (382)
Q Consensus 24 AY-vLsD~~KR~~YD~ 38 (382)
|| ||+||.+|+.|+-
T Consensus 60 AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 60 AYQTLKSPPRRARYLL 75 (173)
T ss_pred HHHHhCChhhhHHHHH
Confidence 99 9999999999994
No 96
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.75 E-value=0.0064 Score=55.05 Aligned_cols=30 Identities=37% Similarity=0.847 Sum_probs=15.5
Q ss_pred ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEec
Q 016833 127 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 167 (382)
Q Consensus 127 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 167 (382)
.+|+.|+|+|.++. ...+|+.|+|+|++..
T Consensus 100 ~~C~~C~G~G~~i~-----------~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 100 CKCPRCRGTGLIQR-----------RQRECDTCAGTGRFRP 129 (186)
T ss_pred CcCCCCCCeeEEec-----------CCCCCCCCCCccEEee
Confidence 34555555555441 1245666666666543
No 97
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.0027 Score=63.98 Aligned_cols=36 Identities=31% Similarity=0.522 Sum_probs=31.2
Q ss_pred CCCCCCCCCcchhhhcCCCCC------------------------------------ce-eccCccccccccc
Q 016833 3 GRAPKKSDNTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQ 38 (382)
Q Consensus 3 ~~~~~~~~~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~ 38 (382)
+|.++..+..|.|.+|||+++ || ||+|++||+.||+
T Consensus 226 drl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~ 298 (490)
T KOG0720|consen 226 DRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDL 298 (490)
T ss_pred HhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 345555667899999999988 99 9999999999997
No 98
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=94.44 E-value=0.012 Score=42.60 Aligned_cols=12 Identities=67% Similarity=1.215 Sum_probs=10.8
Q ss_pred cchhhhcCCCCC
Q 016833 12 TKYYEILGVSKK 23 (382)
Q Consensus 12 ~~~Y~iLgv~~~ 23 (382)
++||+||||+++
T Consensus 1 ~~~y~vLgl~~~ 12 (60)
T smart00271 1 TDYYEILGVPRD 12 (60)
T ss_pred CCHHHHcCCCCC
Confidence 489999999988
No 99
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.017 Score=53.11 Aligned_cols=35 Identities=31% Similarity=0.637 Sum_probs=31.3
Q ss_pred CCCcchhhhcCCCCC-------------------------------------ce-eccCccccccccccchhh
Q 016833 9 SDNTKYYEILGVSKK-------------------------------------RF-VLSDPEKREIYDQYGEDA 43 (382)
Q Consensus 9 ~~~~~~Y~iLgv~~~-------------------------------------AY-vLsD~~KR~~YD~~G~~g 43 (382)
....|.|||||++++ || -|+|++.|+.|..||+..
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 456689999999998 99 999999999999999753
No 100
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=93.47 E-value=0.019 Score=51.62 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=13.1
Q ss_pred ce-eccCcccccccc
Q 016833 24 RF-VLSDPEKREIYD 37 (382)
Q Consensus 24 AY-vLsD~~KR~~YD 37 (382)
|| +|+||-+|+.|=
T Consensus 58 AY~tLkdPl~RA~YL 72 (173)
T PRK01773 58 ALQILKDPILRAEAI 72 (173)
T ss_pred HHHHHCChHHHHHHH
Confidence 99 999999999883
No 101
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=91.60 E-value=0.059 Score=38.16 Aligned_cols=11 Identities=55% Similarity=1.123 Sum_probs=10.1
Q ss_pred chhhhcCCCCC
Q 016833 13 KYYEILGVSKK 23 (382)
Q Consensus 13 ~~Y~iLgv~~~ 23 (382)
+||++|||+++
T Consensus 1 ~~y~vLgl~~~ 11 (55)
T cd06257 1 DYYDILGVPPD 11 (55)
T ss_pred ChHHHcCCCCC
Confidence 69999999988
No 102
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=0.043 Score=51.98 Aligned_cols=16 Identities=38% Similarity=0.380 Sum_probs=15.0
Q ss_pred ce-eccCcccccccccc
Q 016833 24 RF-VLSDPEKREIYDQY 39 (382)
Q Consensus 24 AY-vLsD~~KR~~YD~~ 39 (382)
|| ||+|+.+|.+||.-
T Consensus 97 A~evL~D~~~R~qyDS~ 113 (379)
T COG5269 97 AREVLGDRKLRLQYDSN 113 (379)
T ss_pred HHHHhccHHHHhhcccc
Confidence 99 99999999999973
No 103
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.94 E-value=0.16 Score=47.97 Aligned_cols=29 Identities=34% Similarity=0.724 Sum_probs=25.9
Q ss_pred CcchhhhcCCCCC------------------------------------ce-eccCcccccccccc
Q 016833 11 NTKYYEILGVSKK------------------------------------RF-VLSDPEKREIYDQY 39 (382)
Q Consensus 11 ~~~~Y~iLgv~~~------------------------------------AY-vLsD~~KR~~YD~~ 39 (382)
..|-|++|||+++ || +|.|.+-|..||-+
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 3578999999988 99 99999999999964
No 104
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=87.81 E-value=0.47 Score=41.47 Aligned_cols=22 Identities=36% Similarity=0.848 Sum_probs=11.0
Q ss_pred eCCCCCCCCccCCCcccCCCCCcccEE
Q 016833 112 ICTKCKGKGSKSGASMKCSGCQGSGMK 138 (382)
Q Consensus 112 ~C~~C~G~G~~~~~~~~C~~C~G~G~~ 138 (382)
.|..|.|.+. .+|..|+|+=.+
T Consensus 101 ~C~~Cgg~rf-----v~C~~C~Gs~k~ 122 (147)
T cd03031 101 VCEGCGGARF-----VPCSECNGSCKV 122 (147)
T ss_pred CCCCCCCcCe-----EECCCCCCcceE
Confidence 4555555542 245555555444
No 105
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=84.96 E-value=0.23 Score=50.43 Aligned_cols=20 Identities=35% Similarity=0.718 Sum_probs=18.2
Q ss_pred ce-eccCccccccccccchhh
Q 016833 24 RF-VLSDPEKREIYDQYGEDA 43 (382)
Q Consensus 24 AY-vLsD~~KR~~YD~~G~~g 43 (382)
|| .|+|+..|+.|=.||.-.
T Consensus 152 AY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 152 AYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred HHHhhhhHHHHHHHHhcCCCC
Confidence 99 999999999999998643
No 106
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.27 E-value=0.45 Score=46.22 Aligned_cols=64 Identities=27% Similarity=0.558 Sum_probs=45.9
Q ss_pred cccccCcceeEEeeceeeeCCCCCCCCccC-----CCc-ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEec
Q 016833 94 LEDLYNGTSKKLSLSRNVICTKCKGKGSKS-----GAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 167 (382)
Q Consensus 94 lee~~~G~~~~i~~~r~~~C~~C~G~G~~~-----~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 167 (382)
..+.+.|...+ .......|..|.|+|... ... .+|..|+|.|.+. ...|..|.|.|.+..
T Consensus 166 ~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~-------------~~~c~~~~g~~~v~~ 231 (288)
T KOG0715|consen 166 DCETCFGSGAE-EGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVL-------------RDNCQACSGAGQVRR 231 (288)
T ss_pred ccccccCcCcc-cccccccchhhhCcccccccccCCcceeecccccccceec-------------cchHHHhhcchhhhh
Confidence 34666676644 556678999999999332 122 3699999999876 344999999997665
Q ss_pred CCCC
Q 016833 168 DKDR 171 (382)
Q Consensus 168 ~k~~ 171 (382)
.+..
T Consensus 232 ~k~i 235 (288)
T KOG0715|consen 232 AKDI 235 (288)
T ss_pred heeE
Confidence 5444
No 107
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.62 E-value=0.98 Score=50.74 Aligned_cols=34 Identities=35% Similarity=0.752 Sum_probs=21.3
Q ss_pred ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeE
Q 016833 127 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 164 (382)
Q Consensus 127 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 164 (382)
-.|+.|.|.|++..-.+.-+ .+..+|+.|+|+..
T Consensus 737 G~C~~C~G~G~~~~~~~f~~----~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLP----DVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCCccceEEEEEccCCC----CcccCCCCcCCcee
Confidence 46999999998764333322 33556666666654
No 108
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.54 E-value=1 Score=43.01 Aligned_cols=51 Identities=31% Similarity=0.678 Sum_probs=26.3
Q ss_pred eeCCCCCCCCccCCCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCC
Q 016833 111 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCK 176 (382)
Q Consensus 111 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~ 176 (382)
-.|..|.|.+. .+|..|+|+=.+...- -.-+ .-..|..|+-.|.+ +|+.|.
T Consensus 230 ~~C~~CGg~rF-----lpC~~C~GS~kv~~~~-~~~~----~~~rC~~CNENGLv-----rCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARF-----LPCSNCHGSCKVHEEE-EDDG----GVLRCLECNENGLV-----RCPVCS 280 (281)
T ss_pred CcCCCcCCcce-----EecCCCCCceeeeeec-cCCC----cEEECcccCCCCce-----eCCccC
Confidence 45666666553 3577777766554310 0001 12456666666653 466653
No 109
>PHA02624 large T antigen; Provisional
Probab=80.37 E-value=0.38 Score=51.13 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=25.7
Q ss_pred CCCCcchhhhcCCCCC-----------------------------------ce-eccCccccccc
Q 016833 8 KSDNTKYYEILGVSKK-----------------------------------RF-VLSDPEKREIY 36 (382)
Q Consensus 8 ~~~~~~~Y~iLgv~~~-----------------------------------AY-vLsD~~KR~~Y 36 (382)
.....+||++|||+++ || +|+|+.+|+.|
T Consensus 7 ree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 7 REESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred hHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 3445699999999997 99 99999999999
No 110
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=79.86 E-value=1.8 Score=48.77 Aligned_cols=34 Identities=35% Similarity=0.761 Sum_probs=21.3
Q ss_pred ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeE
Q 016833 127 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 164 (382)
Q Consensus 127 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 164 (382)
-.|+.|.|.|.+....++-+. +..+|+.|+|+..
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~----~~~~C~~C~G~R~ 772 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPD----VYVPCDVCKGKRY 772 (943)
T ss_pred CCCCcccccceEEEEeccCCC----ccccCccccCccc
Confidence 469999999987754443332 2456666666554
No 111
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.14 E-value=2.4 Score=40.65 Aligned_cols=40 Identities=28% Similarity=0.809 Sum_probs=31.7
Q ss_pred ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEec---CC---CCCCCCCCceEEE
Q 016833 127 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN---DK---DRCPQCKGEKVIQ 182 (382)
Q Consensus 127 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~---~k---~~C~~C~G~g~~~ 182 (382)
..|..|.|.+++ +|..|+|+-++.. .. .+|..|+-+|.+.
T Consensus 230 ~~C~~CGg~rFl----------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARFL----------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcceE----------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 479999998874 5999999999887 22 2499999888764
No 112
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=78.71 E-value=2.3 Score=46.67 Aligned_cols=34 Identities=32% Similarity=0.727 Sum_probs=22.3
Q ss_pred ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeE
Q 016833 127 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 164 (382)
Q Consensus 127 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 164 (382)
-.|..|.|.|++.....+-| .+-.+|+.|+|+-+
T Consensus 731 GRCe~C~GdG~ikIeM~FLp----dVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLP----DVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEeccCC----CceeeCCCcCCccc
Confidence 46888889888765554444 33466777766654
No 113
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=71.25 E-value=2.9 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=18.6
Q ss_pred CcEEEEEEEECCCC-CCHHHHHHHHHhCC
Q 016833 297 GKLYIHFTVDFPES-LSPDQCKMLETVLP 324 (382)
Q Consensus 297 GdL~i~~~V~~P~~-l~~~~~~~l~~~lp 324 (382)
..||| .+=|.. |.+.+.+.|-++|.
T Consensus 1721 ~~lyi---lDEPt~GLh~~d~~~Ll~~l~ 1746 (1809)
T PRK00635 1721 PTLFL---LDEIATSLDNQQKSALLVQLR 1746 (1809)
T ss_pred CcEEE---EcCCCCCCCHHHHHHHHHHHH
Confidence 46776 467877 99998888777753
No 114
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=71.19 E-value=13 Score=32.87 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=12.8
Q ss_pred eEEEEEeccCCCCCCEEEeCC
Q 016833 185 KVLEVIVEKGMQNGQKITFPG 205 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~g 205 (382)
-.|.+.||||...|..-++.|
T Consensus 80 PEl~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 80 PELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeeEEecCCCCCcEEEehHH
Confidence 346666777766666666544
No 115
>PRK04023 DNA polymerase II large subunit; Validated
Probab=68.73 E-value=3.4 Score=46.14 Aligned_cols=68 Identities=16% Similarity=0.344 Sum_probs=43.7
Q ss_pred ccccccC-cceeEEeeceeeeCCCCCCCCccCCCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCC
Q 016833 93 SLEDLYN-GTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDR 171 (382)
Q Consensus 93 tlee~~~-G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~ 171 (382)
++.+++. +...++.+. ...|+.|.-.+ ....|+.|+..=. ....|+.|.-... ...
T Consensus 609 ~i~~A~~~~g~~eVEVg-~RfCpsCG~~t----~~frCP~CG~~Te--------------~i~fCP~CG~~~~----~y~ 665 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIG-RRKCPSCGKET----FYRRCPFCGTHTE--------------PVYRCPRCGIEVE----EDE 665 (1121)
T ss_pred cHHHHHhcCCceeeccc-CccCCCCCCcC----CcccCCCCCCCCC--------------cceeCccccCcCC----CCc
Confidence 3556776 566666655 36899998664 3368999987611 1356999954432 256
Q ss_pred CCCCCCceEEEe
Q 016833 172 CPQCKGEKVIQE 183 (382)
Q Consensus 172 C~~C~G~g~~~~ 183 (382)
|+.|.-.-....
T Consensus 666 CPKCG~El~~~s 677 (1121)
T PRK04023 666 CEKCGREPTPYS 677 (1121)
T ss_pred CCCCCCCCCccc
Confidence 999986644333
No 116
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=68.69 E-value=14 Score=33.72 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=20.0
Q ss_pred cCCCCCcccEEEEEEec-CC--ccceeecccCCCCcce
Q 016833 128 KCSGCQGSGMKVSIRHL-GP--SMIQQMQHPCNECKGT 162 (382)
Q Consensus 128 ~C~~C~G~G~~~~~~~~-gp--g~~~~~~~~C~~C~G~ 162 (382)
.|+.|++.|........ =| +=+--+...|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr 39 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYR 39 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCc
Confidence 48888877765433322 23 2233456678888655
No 117
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=67.08 E-value=1.2 Score=39.30 Aligned_cols=15 Identities=33% Similarity=0.487 Sum_probs=14.4
Q ss_pred ce-eccCccccccccc
Q 016833 24 RF-VLSDPEKREIYDQ 38 (382)
Q Consensus 24 AY-vLsD~~KR~~YD~ 38 (382)
|| ||+||.+|+.|+-
T Consensus 45 AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 45 AYQTLKDPLMRAEYML 60 (157)
T ss_pred HHHHhCChhhhHHHHH
Confidence 99 9999999999996
No 118
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=66.84 E-value=6.3 Score=45.23 Aligned_cols=59 Identities=20% Similarity=0.532 Sum_probs=36.9
Q ss_pred CcceeEEeeceeeeCCCCCCCCccCCCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecC---CCCCCCC
Q 016833 99 NGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND---KDRCPQC 175 (382)
Q Consensus 99 ~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~---k~~C~~C 175 (382)
.+...++.+. ...|+.|...... ..|+.|...=. ....|+.|+.. +... ...|+.|
T Consensus 657 ~~G~ieVEV~-~rkCPkCG~~t~~----~fCP~CGs~te--------------~vy~CPsCGae--v~~des~a~~CP~C 715 (1337)
T PRK14714 657 EGGVIEVEVG-RRRCPSCGTETYE----NRCPDCGTHTE--------------PVYVCPDCGAE--VPPDESGRVECPRC 715 (1337)
T ss_pred cCCeEEEEEE-EEECCCCCCcccc----ccCcccCCcCC--------------CceeCccCCCc--cCCCccccccCCCC
Confidence 4555555554 4789999875422 48999987521 13479999874 1110 2379999
Q ss_pred CCc
Q 016833 176 KGE 178 (382)
Q Consensus 176 ~G~ 178 (382)
...
T Consensus 716 Gtp 718 (1337)
T PRK14714 716 DVE 718 (1337)
T ss_pred CCc
Confidence 854
No 119
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=64.98 E-value=34 Score=30.44 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=16.3
Q ss_pred CEEEEEecCCcEEEEEeCCCccccCCcEEEEcC
Q 016833 252 FQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 284 (382)
Q Consensus 252 ~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g 284 (382)
+++.||-| .+++|||. .+.|.+-.|.|
T Consensus 72 a~i~IPEl-----~lei~pg~-~~~G~iTTVEG 98 (163)
T TIGR00340 72 ATIRIPEL-----GIKIEPGP-ASQGYISNIEG 98 (163)
T ss_pred cEEEccce-----eEEecCCC-cCCceEEehHh
Confidence 45667754 46678873 34576666743
No 120
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=64.98 E-value=1.4 Score=38.65 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=13.2
Q ss_pred ce-eccCcccccccc
Q 016833 24 RF-VLSDPEKREIYD 37 (382)
Q Consensus 24 AY-vLsD~~KR~~YD 37 (382)
|| .|.||-+|+.|=
T Consensus 64 AY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 64 AYDTLKDPLARARYL 78 (168)
T ss_pred HHHHHHhHHHHHHHH
Confidence 99 999999999985
No 121
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=63.86 E-value=6.7 Score=34.23 Aligned_cols=39 Identities=33% Similarity=0.985 Sum_probs=31.9
Q ss_pred ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCC-------CCCCCCCCceEE
Q 016833 127 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK-------DRCPQCKGEKVI 181 (382)
Q Consensus 127 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k-------~~C~~C~G~g~~ 181 (382)
..|..|.|.+++ +|..|+|+-+++... .+|+.|+-+|.+
T Consensus 100 ~~C~~Cgg~rfv----------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARFV----------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCeE----------------ECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 469999998874 599999999988765 369999987764
No 122
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.22 E-value=4.4 Score=45.68 Aligned_cols=36 Identities=33% Similarity=0.644 Sum_probs=27.4
Q ss_pred ccCCCCcceeEEecC-------CCCCCCCCCceEEEeceEEEEEe
Q 016833 154 HPCNECKGTGETIND-------KDRCPQCKGEKVIQEKKVLEVIV 191 (382)
Q Consensus 154 ~~C~~C~G~G~~~~~-------k~~C~~C~G~g~~~~~~~l~V~I 191 (382)
-.|+.|.|.|.+..+ ...|..|+|+++..+. ++|++
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~--l~v~~ 779 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRET--LEVKY 779 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHH--Hhcee
Confidence 569999999998731 3469999999987764 55543
No 123
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=53.36 E-value=16 Score=26.25 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=20.4
Q ss_pred CCCcEEEEEEEECCCC--CCHHHHHHH
Q 016833 295 MRGKLYIHFTVDFPES--LSPDQCKML 319 (382)
Q Consensus 295 ~~GdL~i~~~V~~P~~--l~~~~~~~l 319 (382)
..||+.|-|+|.+|+- +|.++.+.|
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea~ 52 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEAI 52 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHHh
Confidence 4699999999999997 667666654
No 124
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=52.05 E-value=12 Score=37.25 Aligned_cols=32 Identities=44% Similarity=0.878 Sum_probs=23.8
Q ss_pred eceeeeCCCCCCCCccCCCcccCCCCCcccEEEEEEecCCccc
Q 016833 107 LSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMI 149 (382)
Q Consensus 107 ~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~ 149 (382)
+...+.|..|+|.| |+.|+++|++-. +|-||+
T Consensus 257 ~Evdv~~~~~~g~g--------c~~ck~~~WiEi---lG~Gmv 288 (339)
T PRK00488 257 AEVDVSCFKCGGKG--------CRVCKGTGWLEI---LGCGMV 288 (339)
T ss_pred eEEEEEEeccCCCc--------ccccCCCCceEE---eccCcc
Confidence 34567899999887 899999998642 455565
No 125
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=50.40 E-value=21 Score=39.20 Aligned_cols=61 Identities=25% Similarity=0.524 Sum_probs=39.8
Q ss_pred CcceeEEeece-----eeeCCCCCCCCccCCCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCC
Q 016833 99 NGTSKKLSLSR-----NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 173 (382)
Q Consensus 99 ~G~~~~i~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~ 173 (382)
.|...-+-++| ...|..|.- ...|+.|...=.. ++.. -+-.|..|+-...+ . ..|+
T Consensus 419 ~geQ~llflnRRGys~~l~C~~Cg~-------v~~Cp~Cd~~lt~---H~~~------~~L~CH~Cg~~~~~-p--~~Cp 479 (730)
T COG1198 419 RGEQVLLFLNRRGYAPLLLCRDCGY-------IAECPNCDSPLTL---HKAT------GQLRCHYCGYQEPI-P--QSCP 479 (730)
T ss_pred cCCeEEEEEccCCccceeecccCCC-------cccCCCCCcceEE---ecCC------CeeEeCCCCCCCCC-C--CCCC
Confidence 45555555555 489999953 3689999976222 2221 25679999877332 2 7899
Q ss_pred CCCCc
Q 016833 174 QCKGE 178 (382)
Q Consensus 174 ~C~G~ 178 (382)
.|.+.
T Consensus 480 ~Cgs~ 484 (730)
T COG1198 480 ECGSE 484 (730)
T ss_pred CCCCC
Confidence 99876
No 126
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=49.03 E-value=11 Score=38.64 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=21.8
Q ss_pred cEEEEEE-ecCCccceeecccCCCCcceeEEec
Q 016833 136 GMKVSIR-HLGPSMIQQMQHPCNECKGTGETIN 167 (382)
Q Consensus 136 G~~~~~~-~~gpg~~~~~~~~C~~C~G~G~~~~ 167 (382)
|.+-.+| +.++.+...+..+|+.|+|+|.+..
T Consensus 372 GLvE~TRkr~~~sL~e~~~~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 372 GLVEMTRKRLRESLMEVLGTVCPHCSGTGIVKT 404 (414)
T ss_pred cceEEeccccCcChHHHhcCCCCCCcCeeEEcc
Confidence 4433333 4566677777888999999988754
No 127
>PF02814 UreE_N: UreE urease accessory protein, N-terminal domain; InterPro: IPR004029 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The N-terminal domain is termed the peptide-binding domain. Deletion of this domain does not eliminate enzymatic activity, and the truncated protein can still activate urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=44.99 E-value=48 Score=24.43 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=23.3
Q ss_pred CEEEEEecCCcEEEEEeCCCccccCCcEEEEcC
Q 016833 252 FQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 284 (382)
Q Consensus 252 ~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g 284 (382)
....++|-+|+.+-|.+|.+..+++|+++....
T Consensus 29 ~r~r~~t~~G~ei~i~L~r~~~L~~GDvL~~d~ 61 (65)
T PF02814_consen 29 RRLRLTTDDGREIGIDLPRGTVLRDGDVLYLDD 61 (65)
T ss_dssp SEEEEE-TTS-EEEEE-SSTTT--TTEEEEECT
T ss_pred eEEEEECCCCCEEEEECCCCcccCCCCEEEeCC
Confidence 356778889999999999998899999987654
No 128
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=43.03 E-value=20 Score=38.90 Aligned_cols=49 Identities=29% Similarity=0.738 Sum_probs=30.5
Q ss_pred eeCCCCCCCCccCCCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCc
Q 016833 111 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGE 178 (382)
Q Consensus 111 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~ 178 (382)
.+|+.|+-.= .....-|+.|...-. ...|+.|+-. +......|..|...
T Consensus 2 ~~Cp~Cg~~n--~~~akFC~~CG~~l~---------------~~~Cp~CG~~--~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFEN--PNNNRFCQKCGTSLT---------------HKPCPQCGTE--VPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcC--CCCCccccccCCCCC---------------CCcCCCCCCC--CCcccccccccCCc
Confidence 4799996542 122357999944321 2579999755 33344679999754
No 129
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=41.70 E-value=12 Score=42.31 Aligned_cols=35 Identities=23% Similarity=0.526 Sum_probs=25.4
Q ss_pred Eeece-eeeCCCCCCCCccCC-------CcccCCCCCcccEEE
Q 016833 105 LSLSR-NVICTKCKGKGSKSG-------ASMKCSGCQGSGMKV 139 (382)
Q Consensus 105 i~~~r-~~~C~~C~G~G~~~~-------~~~~C~~C~G~G~~~ 139 (382)
++++. .-.|+.|.|.|.... ...+|+.|+|+.+.-
T Consensus 732 FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~ 774 (943)
T PRK00349 732 FSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNR 774 (943)
T ss_pred CCCCCCCCCCCcccccceEEEEeccCCCccccCccccCccccc
Confidence 34443 457999999997642 236899999998754
No 130
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=40.91 E-value=40 Score=28.58 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=13.4
Q ss_pred eEEEEEeccCCCCCCEEEeC
Q 016833 185 KVLEVIVEKGMQNGQKITFP 204 (382)
Q Consensus 185 ~~l~V~Ip~G~~~g~~i~~~ 204 (382)
..+++.-+.+.+.||.+.+.
T Consensus 42 ~~~~~~~~~~~~~GD~V~v~ 61 (135)
T PF04246_consen 42 ITFRAPNPIGAKVGDRVEVE 61 (135)
T ss_pred EEEEecCCCCCCCCCEEEEE
Confidence 45666666777777777664
No 131
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=38.57 E-value=14 Score=29.78 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=7.5
Q ss_pred ccCCCCcceeEE
Q 016833 154 HPCNECKGTGET 165 (382)
Q Consensus 154 ~~C~~C~G~G~~ 165 (382)
..|..|.|.|..
T Consensus 33 k~c~rcgg~G~s 44 (95)
T PF03589_consen 33 KDCERCGGRGYS 44 (95)
T ss_pred hhhhhhcCCCCC
Confidence 456666666654
No 132
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=38.42 E-value=13 Score=25.23 Aligned_cols=8 Identities=50% Similarity=0.891 Sum_probs=6.9
Q ss_pred ce-eccCcc
Q 016833 24 RF-VLSDPE 31 (382)
Q Consensus 24 AY-vLsD~~ 31 (382)
|| +|||.+
T Consensus 12 ayvilsdde 20 (47)
T PF06975_consen 12 AYVILSDDE 20 (47)
T ss_pred heeeccccc
Confidence 99 999955
No 133
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=37.85 E-value=43 Score=23.67 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=8.3
Q ss_pred ccCCCCCcccEEE
Q 016833 127 MKCSGCQGSGMKV 139 (382)
Q Consensus 127 ~~C~~C~G~G~~~ 139 (382)
.+||.|.|....+
T Consensus 2 kPCPfCGg~~~~~ 14 (53)
T TIGR03655 2 KPCPFCGGADVYL 14 (53)
T ss_pred CCCCCCCCcceee
Confidence 3577777766643
No 134
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=37.51 E-value=33 Score=33.70 Aligned_cols=11 Identities=18% Similarity=0.625 Sum_probs=7.4
Q ss_pred eeeeCCCCCCC
Q 016833 109 RNVICTKCKGK 119 (382)
Q Consensus 109 r~~~C~~C~G~ 119 (382)
....||.|.+.
T Consensus 186 ~~~~CPvCGs~ 196 (309)
T PRK03564 186 QRQFCPVCGSM 196 (309)
T ss_pred CCCCCCCCCCc
Confidence 34678888765
No 135
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=37.12 E-value=32 Score=30.31 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=19.6
Q ss_pred cCCCCCccc-EEEEEEecCCccceeecccCCCCcc
Q 016833 128 KCSGCQGSG-MKVSIRHLGPSMIQQMQHPCNECKG 161 (382)
Q Consensus 128 ~C~~C~G~G-~~~~~~~~gpg~~~~~~~~C~~C~G 161 (382)
.||.|...- .++..+-+.||..-.....|+.|+.
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~ 36 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGK 36 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCC
Confidence 588888766 5555666666533222255665543
No 136
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=37.10 E-value=61 Score=23.39 Aligned_cols=11 Identities=55% Similarity=1.352 Sum_probs=6.9
Q ss_pred CCCCCCceEEE
Q 016833 172 CPQCKGEKVIQ 182 (382)
Q Consensus 172 C~~C~G~g~~~ 182 (382)
|+.|+-.-.+.
T Consensus 31 CpKCK~EtlI~ 41 (55)
T PF14205_consen 31 CPKCKQETLID 41 (55)
T ss_pred CCCCCceEEEE
Confidence 77777655443
No 137
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=37.02 E-value=44 Score=27.72 Aligned_cols=39 Identities=15% Similarity=0.383 Sum_probs=16.7
Q ss_pred cCcceeEEee-ceeeeCCCCCCCCccCCCcccCCCCCccc
Q 016833 98 YNGTSKKLSL-SRNVICTKCKGKGSKSGASMKCSGCQGSG 136 (382)
Q Consensus 98 ~~G~~~~i~~-~r~~~C~~C~G~G~~~~~~~~C~~C~G~G 136 (382)
+.|+...+.. +-...|..|...-........||.|++..
T Consensus 57 ~egA~L~I~~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 57 AQGCDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred cCCCEEEEEeeCcEEEcccCCCEEecCCcCccCcCCCCCC
Confidence 3444444432 23456666653333222223355555443
No 138
>PRK11712 ribonuclease G; Provisional
Probab=36.43 E-value=18 Score=37.80 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=21.8
Q ss_pred cEEEEE-EecCCccceeecccCCCCcceeEEec
Q 016833 136 GMKVSI-RHLGPSMIQQMQHPCNECKGTGETIN 167 (382)
Q Consensus 136 G~~~~~-~~~gpg~~~~~~~~C~~C~G~G~~~~ 167 (382)
|.+-.+ ++.++.+...+..+|+.|+|+|.+..
T Consensus 384 GLvEmTRkR~r~sl~~~l~~~Cp~C~G~G~v~s 416 (489)
T PRK11712 384 GLVEMTRKRTRESLEHVLCGECPTCHGRGTVKT 416 (489)
T ss_pred ceEEEEecccCCChHHHhcCCCCCCCCCCCcCC
Confidence 443333 34566677777888999999888754
No 139
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=36.40 E-value=19 Score=33.91 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=8.8
Q ss_pred ccCCCCcceeEEec
Q 016833 154 HPCNECKGTGETIN 167 (382)
Q Consensus 154 ~~C~~C~G~G~~~~ 167 (382)
.+||+|+|+|.+.+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 35777777776654
No 140
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=36.19 E-value=1.8e+02 Score=22.61 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=34.1
Q ss_pred HhCCC-EEEEEecCCcEEEEEeCCC---cc-ccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Q 016833 248 ALCGF-QFVITHLDGRQLLIKSQPG---EV-VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLET 321 (382)
Q Consensus 248 Al~G~-~~~i~tldG~~l~i~~p~g---~v-i~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~ 321 (382)
+++|. -++|.+.||.+..+.+|.- .+ |+-|+.+.+. |..-....+||++-. ++++|.+.|++
T Consensus 8 ~~~G~n~~~V~~~dG~~~l~~iP~KfRk~iWIkrGd~VlV~----p~~~~~kvkgeIv~i--------~~~~qvk~L~k 74 (78)
T cd05792 8 GSKGNNLHEVETPNGSRYLVSMPTKFRKNIWIKRGDFVLVE----PIEEGDKVKAEIVKI--------LTRDHVKYIKE 74 (78)
T ss_pred EcCCCcEEEEEcCCCCEEEEEechhhcccEEEEeCCEEEEE----ecccCCceEEEEEEE--------ECHHHHHHHHH
Confidence 34554 4678999999888888741 11 3445555442 221111124444322 56777777664
No 141
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=35.58 E-value=13 Score=44.71 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=17.9
Q ss_pred cCCCCCcccEEEEEEecCCccceeecccCCCCcceeE
Q 016833 128 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 164 (382)
Q Consensus 128 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 164 (382)
.|+.|.|.|++..-.+.-| -+..+|+.|+|+.+
T Consensus 1609 rC~~C~G~G~i~i~m~fl~----dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYA----LEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCccCceEEEecccCC----CcccCCCCCCCcCC
Confidence 4777777777544333222 33455666655544
No 142
>PRK05580 primosome assembly protein PriA; Validated
Probab=35.41 E-value=54 Score=35.80 Aligned_cols=62 Identities=24% Similarity=0.574 Sum_probs=38.1
Q ss_pred CcceeEEeece-----eeeCCCCCCCCccCCCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCC
Q 016833 99 NGTSKKLSLSR-----NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 173 (382)
Q Consensus 99 ~G~~~~i~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~ 173 (382)
.|...-+-++| .+.|..|.- ...|+.|.+. .... . ....-.|..|+-+-. .-..|+
T Consensus 365 ~g~qvll~~nrrGy~~~~~C~~Cg~-------~~~C~~C~~~-l~~h--~------~~~~l~Ch~Cg~~~~---~~~~Cp 425 (679)
T PRK05580 365 RGEQVLLFLNRRGYAPFLLCRDCGW-------VAECPHCDAS-LTLH--R------FQRRLRCHHCGYQEP---IPKACP 425 (679)
T ss_pred cCCeEEEEEcCCCCCCceEhhhCcC-------ccCCCCCCCc-eeEE--C------CCCeEECCCCcCCCC---CCCCCC
Confidence 45555555555 578998853 3589999983 2221 0 112356999975432 236899
Q ss_pred CCCCce
Q 016833 174 QCKGEK 179 (382)
Q Consensus 174 ~C~G~g 179 (382)
.|++..
T Consensus 426 ~Cg~~~ 431 (679)
T PRK05580 426 ECGSTD 431 (679)
T ss_pred CCcCCe
Confidence 998764
No 143
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=34.70 E-value=18 Score=39.94 Aligned_cols=36 Identities=22% Similarity=0.531 Sum_probs=26.4
Q ss_pred EEeecee-eeCCCCCCCCccCC------C-cccCCCCCcccEEE
Q 016833 104 KLSLSRN-VICTKCKGKGSKSG------A-SMKCSGCQGSGMKV 139 (382)
Q Consensus 104 ~i~~~r~-~~C~~C~G~G~~~~------~-~~~C~~C~G~G~~~ 139 (382)
.++++.+ -.|..|+|.|...- . ..+|+.|+|+-+.-
T Consensus 723 rFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~ 766 (935)
T COG0178 723 RFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNR 766 (935)
T ss_pred cccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCccccc
Confidence 3455544 68999999997631 2 37899999998754
No 144
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=33.72 E-value=21 Score=26.10 Aligned_cols=14 Identities=50% Similarity=0.748 Sum_probs=11.4
Q ss_pred ccccccccccCcce
Q 016833 89 PLKVSLEDLYNGTS 102 (382)
Q Consensus 89 ~l~vtlee~~~G~~ 102 (382)
.++++|+|+.+|..
T Consensus 30 RFeIsLeDl~~GE~ 43 (67)
T COG5216 30 RFEISLEDLRNGEV 43 (67)
T ss_pred EeEEEHHHhhCCce
Confidence 36789999999965
No 145
>PLN00208 translation initiation factor (eIF); Provisional
Probab=33.62 E-value=1.8e+02 Score=25.31 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=38.7
Q ss_pred hCCCEEEEEecCCcEEEEEeCCCcc-----ccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHh
Q 016833 249 LCGFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETV 322 (382)
Q Consensus 249 l~G~~~~i~tldG~~l~i~~p~g~v-----i~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~ 322 (382)
|-+..+.|...||......+| |.. |++|+.+.|. +..+. ..+|+++-+ ++++|...|++.
T Consensus 42 lGn~~~~V~c~dG~~rLa~Ip-GKmRKrIWI~~GD~VlVe---l~~~d--~~KgdIv~r--------y~~dqvr~Lkk~ 106 (145)
T PLN00208 42 LGNGRCEALCIDGTKRLCHIR-GKMRKKVWIAAGDIILVG---LRDYQ--DDKADVILK--------YMPDEARLLKAY 106 (145)
T ss_pred cCCCEEEEEECCCCEEEEEEe-ccceeeEEecCCCEEEEE---ccCCC--CCEEEEEEE--------cCHHHHHHHHHc
Confidence 334567777778876666554 432 5678888887 33221 347777655 578888888775
No 146
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=32.88 E-value=14 Score=40.70 Aligned_cols=54 Identities=24% Similarity=0.523 Sum_probs=0.0
Q ss_pred eeCCCCCCCCccCCCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceE
Q 016833 111 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 186 (382)
Q Consensus 111 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~ 186 (382)
..|+.|.-... ...|+.|...=. ..-.|+.|+-.- ..+.|+.|.-.......+.
T Consensus 656 r~Cp~Cg~~t~----~~~Cp~CG~~T~--------------~~~~Cp~C~~~~----~~~~C~~C~~~~~~~~~~~ 709 (900)
T PF03833_consen 656 RRCPKCGKETF----YNRCPECGSHTE--------------PVYVCPDCGIEV----EEDECPKCGRETTSYSKQK 709 (900)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccCcccCCcch----hhcCcccCCccc--------------cceecccccccc----CccccccccccCcccceee
Confidence 57888864432 357888875422 245688886532 2368999986644444333
No 147
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=32.11 E-value=19 Score=34.03 Aligned_cols=13 Identities=38% Similarity=0.917 Sum_probs=10.0
Q ss_pred ccCCCCCcccEEE
Q 016833 127 MKCSGCQGSGMKV 139 (382)
Q Consensus 127 ~~C~~C~G~G~~~ 139 (382)
.+||.|+|+|++-
T Consensus 39 vtCPTCqGtGrIP 51 (238)
T PF07092_consen 39 VTCPTCQGTGRIP 51 (238)
T ss_pred CcCCCCcCCccCC
Confidence 5788888888764
No 148
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=30.98 E-value=62 Score=23.78 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhC
Q 016833 302 HFTVDFPESLSPDQCKMLETVL 323 (382)
Q Consensus 302 ~~~V~~P~~l~~~~~~~l~~~l 323 (382)
..+..||.+||++++..+-.+.
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la 38 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLA 38 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 5678899999999998876664
No 149
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=30.59 E-value=2.5e+02 Score=22.77 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=35.5
Q ss_pred hCCCEEEEEecCCcEEEEEeCCCcc-----ccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHh
Q 016833 249 LCGFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETV 322 (382)
Q Consensus 249 l~G~~~~i~tldG~~l~i~~p~g~v-----i~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~ 322 (382)
+-+..+.|...||..+...+| |.. |++|+.+.|. |..-....+|+++-+ ++++|...|++.
T Consensus 29 lG~~~~~V~~~dG~~~la~i~-GK~Rk~iwI~~GD~VlVs----p~d~~~~~kg~Iv~r--------~~~~qv~~L~~~ 94 (99)
T TIGR00523 29 LGAGRVKVRCLDGKTRLGRIP-GKLKKRIWIREGDVVIVK----PWEFQGDDKCDIVWR--------YTKTQVEWLKRK 94 (99)
T ss_pred cCCCEEEEEeCCCCEEEEEEc-hhhcccEEecCCCEEEEE----EccCCCCccEEEEEE--------cCHHHHHHHHHc
Confidence 333456777778877666665 332 5667777772 322111246766544 567787777653
No 150
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=30.49 E-value=67 Score=26.69 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=11.3
Q ss_pred eeeCCCCCCCCccCCCcccCCCCCccc
Q 016833 110 NVICTKCKGKGSKSGASMKCSGCQGSG 136 (382)
Q Consensus 110 ~~~C~~C~G~G~~~~~~~~C~~C~G~G 136 (382)
...|..|.-.-........||.|++..
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 70 ECECEDCSEEVSPEIDLYRCPKCHGIM 96 (115)
T ss_pred EEEcccCCCEEecCCcCccCcCCcCCC
Confidence 355666653222211223355554443
No 151
>PRK14051 negative regulator GrlR; Provisional
Probab=30.23 E-value=2.2e+02 Score=23.52 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=38.6
Q ss_pred ccEEEEEEEecCCccccccccceeeeccC--HHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcCCCCCC
Q 016833 216 GDIVFVLQQKEHPKFKRKGDDLFVEHTLS--LTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 289 (382)
Q Consensus 216 GDl~v~i~~k~h~~F~R~g~DL~~~~~I~--l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP~ 289 (382)
-||++.++-.-|+.-.--+-+--+.+.|+ +.+.=.++++.-.--++..|.|.+-. +.=..+.|++-|||.
T Consensus 48 ~~iilhvhR~n~ei~SVf~~eqdy~L~i~kk~~sn~~~~~l~~HV~~Nekl~vdv~a----kFI~~LvI~~~~~~~ 119 (123)
T PRK14051 48 EDIILHVHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLHCHVRGNEKLFVDVYA----KFIEPLVIKNTGMPQ 119 (123)
T ss_pred ceeEEEEEecccccccccCccccEEEecchhheeCCCCeEEEEEEcCCcEEEEEEee----eeeeeeEEccCCCcc
Confidence 46677776665554433332223344444 33433444444333466677776643 333678899999995
No 152
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=30.12 E-value=35 Score=32.60 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=24.9
Q ss_pred eeccCHHHHhCC-CEEEEEecCCcEEEEEeCC
Q 016833 240 EHTLSLTEALCG-FQFVITHLDGRQLLIKSQP 270 (382)
Q Consensus 240 ~~~I~l~eAl~G-~~~~i~tldG~~l~i~~p~ 270 (382)
..+|-|+||++| +..+|+|.|+..=.+.|.|
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp 50 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITP 50 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcC
Confidence 467899999999 6899999999765555544
No 153
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=30.08 E-value=1.1e+02 Score=28.01 Aligned_cols=85 Identities=18% Similarity=0.292 Sum_probs=41.6
Q ss_pred ccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCCCCCCceEEEeceEEEEEeccCCCCCCEEEe-CC
Q 016833 127 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF-PG 205 (382)
Q Consensus 127 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~~C~G~g~~~~~~~l~V~Ip~G~~~g~~i~~-~g 205 (382)
..|+.|+..-..+... + . .....|..|+....+-..+..-. ...-.++....++|.|..-...|.-|.- .|
T Consensus 99 V~C~~C~~pdT~l~k~--~-~---~~~l~C~aCGa~~~v~~~~~~~~--~~~~~~~~~e~~~v~Ie~l~~~G~GVak~~g 170 (201)
T PRK12336 99 VICSECGLPDTRLVKE--D-R---VLMLRCDACGAHRPVKKRKASSE--TQREAIEEGKTYEVEITGTGRKGDGVAKKGK 170 (201)
T ss_pred EECCCCCCCCcEEEEc--C-C---eEEEEcccCCCCccccccccccC--CCCCCCccCCEEEEEEEEccCCCceEEEECC
Confidence 5799999887655322 1 1 12356778877766543211110 0011112223455666555555555432 21
Q ss_pred CCCCCCCCCCccEE
Q 016833 206 EADEAPDTVTGDIV 219 (382)
Q Consensus 206 eG~~~~g~~~GDl~ 219 (382)
.--..++..|||.+
T Consensus 171 ~~vfV~galpGE~V 184 (201)
T PRK12336 171 YTIFVPGAKKGEVV 184 (201)
T ss_pred EEEEeCCCCCCCEE
Confidence 11114566777765
No 154
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.95 E-value=48 Score=34.86 Aligned_cols=63 Identities=27% Similarity=0.544 Sum_probs=37.8
Q ss_pred CcceeEEeece-----eeeCCCCCCCCccCCCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCC
Q 016833 99 NGTSKKLSLSR-----NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 173 (382)
Q Consensus 99 ~G~~~~i~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~ 173 (382)
.|...-+-++| ...|..|.- ...|+.|.+.=..- + ....-.|..|+-+-. .-..|+
T Consensus 197 ~g~qvLvflnrrGya~~~~C~~Cg~-------~~~C~~C~~~l~~h---~------~~~~l~Ch~Cg~~~~---~~~~Cp 257 (505)
T TIGR00595 197 AGEQSILFLNRRGYSKNLLCRSCGY-------ILCCPNCDVSLTYH---K------KEGKLRCHYCGYQEP---IPKTCP 257 (505)
T ss_pred cCCcEEEEEeCCcCCCeeEhhhCcC-------ccCCCCCCCceEEe---c------CCCeEEcCCCcCcCC---CCCCCC
Confidence 45555544444 368998853 36899998742211 1 112456999974432 336899
Q ss_pred CCCCceE
Q 016833 174 QCKGEKV 180 (382)
Q Consensus 174 ~C~G~g~ 180 (382)
.|.+...
T Consensus 258 ~C~s~~l 264 (505)
T TIGR00595 258 QCGSEDL 264 (505)
T ss_pred CCCCCee
Confidence 9987643
No 155
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=29.94 E-value=19 Score=32.15 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=18.3
Q ss_pred cchhhhcCCCCC--------------ce-eccCcccc
Q 016833 12 TKYYEILGVSKK--------------RF-VLSDPEKR 33 (382)
Q Consensus 12 ~~~Y~iLgv~~~--------------AY-vLsD~~KR 33 (382)
+.+|+++|++-+ -| .||||...
T Consensus 122 ka~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e 158 (211)
T KOG0855|consen 122 KAGAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNE 158 (211)
T ss_pred hcCceEEeeccCchHHHHHhhhhccCCeeeecCcchh
Confidence 358999999987 89 99998644
No 156
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=29.88 E-value=2.6e+02 Score=21.54 Aligned_cols=61 Identities=16% Similarity=0.345 Sum_probs=35.7
Q ss_pred HhCCCEEEEEecCCcEEEEEeCCCcc-----ccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Q 016833 248 ALCGFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLET 321 (382)
Q Consensus 248 Al~G~~~~i~tldG~~l~i~~p~g~v-----i~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~ 321 (382)
+|-+..++|...||..+...+| |.. |++|+.+.|. |..-+...+|+.+-. ++++|...|++
T Consensus 9 ~lG~~~~~V~~~dg~~~l~~i~-gK~Rk~iwI~~GD~VlV~----~~~~~~~~kg~Iv~r--------~~~~~vk~L~k 74 (78)
T cd04456 9 MLGNNRHEVECADGQRRLVSIP-GKLRKNIWIKRGDFLIVD----PIEEGEDVKADIIFV--------YCKDHVRSLKK 74 (78)
T ss_pred ECCCCEEEEEECCCCEEEEEEc-hhhccCEEEcCCCEEEEE----ecccCCCceEEEEEE--------eCHHHHHHHHH
Confidence 3444568888889988777776 332 4566666653 111011235555443 56778777765
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.47 E-value=47 Score=36.23 Aligned_cols=60 Identities=23% Similarity=0.617 Sum_probs=38.9
Q ss_pred CcceeEEeece-----eeeCCCCCCCCccCCCcccCCCCCcccEEEEEEecCCccceeecccCCCCcceeEEecCCCCCC
Q 016833 99 NGTSKKLSLSR-----NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 173 (382)
Q Consensus 99 ~G~~~~i~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~k~~C~ 173 (382)
.| ..-+-++| ...|..|. ....|+.|.+.=..-. . ...-.|..|+-.- . -..|+
T Consensus 368 ~g-qvll~lnRrGyap~l~C~~Cg-------~~~~C~~C~~~L~~h~--~-------~~~l~Ch~CG~~~--~--p~~Cp 426 (665)
T PRK14873 368 HG-PVLVQVPRRGYVPSLACARCR-------TPARCRHCTGPLGLPS--A-------GGTPRCRWCGRAA--P--DWRCP 426 (665)
T ss_pred cC-cEEEEecCCCCCCeeEhhhCc-------CeeECCCCCCceeEec--C-------CCeeECCCCcCCC--c--CccCC
Confidence 46 66666666 37899985 3468999997533211 0 1145699997542 2 37899
Q ss_pred CCCCce
Q 016833 174 QCKGEK 179 (382)
Q Consensus 174 ~C~G~g 179 (382)
.|.+..
T Consensus 427 ~Cgs~~ 432 (665)
T PRK14873 427 RCGSDR 432 (665)
T ss_pred CCcCCc
Confidence 998763
No 158
>PF14353 CpXC: CpXC protein
Probab=29.26 E-value=27 Score=29.26 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=8.3
Q ss_pred cccCCCCcceeEE
Q 016833 153 QHPCNECKGTGET 165 (382)
Q Consensus 153 ~~~C~~C~G~G~~ 165 (382)
..+|+.|+....+
T Consensus 38 ~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 38 SFTCPSCGHKFRL 50 (128)
T ss_pred EEECCCCCCceec
Confidence 4567777766654
No 159
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.50 E-value=25 Score=23.04 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=5.0
Q ss_pred cCCCCCccc
Q 016833 128 KCSGCQGSG 136 (382)
Q Consensus 128 ~C~~C~G~G 136 (382)
+||.|+..-
T Consensus 4 ~CP~C~~~f 12 (37)
T PF13719_consen 4 TCPNCQTRF 12 (37)
T ss_pred ECCCCCceE
Confidence 566665443
No 160
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=28.39 E-value=16 Score=32.34 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=20.5
Q ss_pred hhhhcCCCCC--------------ce-eccCccccccccccch
Q 016833 14 YYEILGVSKK--------------RF-VLSDPEKREIYDQYGE 41 (382)
Q Consensus 14 ~Y~iLgv~~~--------------AY-vLsD~~KR~~YD~~G~ 41 (382)
-+.|||||++ -| .|||++.. +.-+||-
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~-v~~~ygv 105 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGE-VAEAYGV 105 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHH-HHHHhCc
Confidence 3689999999 88 99998865 4445543
No 161
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=27.81 E-value=64 Score=31.70 Aligned_cols=10 Identities=20% Similarity=0.816 Sum_probs=6.8
Q ss_pred eeeCCCCCCC
Q 016833 110 NVICTKCKGK 119 (382)
Q Consensus 110 ~~~C~~C~G~ 119 (382)
...||.|.+.
T Consensus 184 ~~~CPvCGs~ 193 (305)
T TIGR01562 184 RTLCPACGSP 193 (305)
T ss_pred CCcCCCCCCh
Confidence 3478888765
No 162
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=27.73 E-value=2.8e+02 Score=21.27 Aligned_cols=62 Identities=13% Similarity=0.267 Sum_probs=36.7
Q ss_pred HHhCCCEEEEEecCCcEEEEEeCCCcc-----ccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Q 016833 247 EALCGFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLET 321 (382)
Q Consensus 247 eAl~G~~~~i~tldG~~l~i~~p~g~v-----i~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~ 321 (382)
+++-+..+.|...||..+...+| |.. +++|+.+.+. +..+ ...+|+.+-+ ++++|...|++
T Consensus 8 ~~~g~~~~~V~~~~g~~~la~i~-gK~rk~iwI~~GD~V~Ve---~~~~--d~~kg~Iv~r--------~~~~~v~~L~~ 73 (77)
T cd05793 8 KMLGNGRLEVRCFDGKKRLCRIR-GKMRKRVWINEGDIVLVA---PWDF--QDDKADIIYK--------YTPDEVRWLKR 73 (77)
T ss_pred EEcCCCEEEEEECCCCEEEEEEc-hhhcccEEEcCCCEEEEE---eccc--cCCEEEEEEE--------cCHHHHHHHHH
Confidence 34445567888888887777665 432 4566666665 1111 1246665544 46778777765
Q ss_pred h
Q 016833 322 V 322 (382)
Q Consensus 322 ~ 322 (382)
.
T Consensus 74 ~ 74 (77)
T cd05793 74 K 74 (77)
T ss_pred c
Confidence 3
No 163
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=27.68 E-value=26 Score=25.79 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=16.8
Q ss_pred EEEEEecCCcEEEEEeCCCc
Q 016833 253 QFVITHLDGRQLLIKSQPGE 272 (382)
Q Consensus 253 ~~~i~tldG~~l~i~~p~g~ 272 (382)
.+.++||.|+.|.|.|.|.+
T Consensus 2 ~iKvktLt~KeIeidIep~D 21 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTD 21 (70)
T ss_pred eeeEeeeccceEEEeeCcch
Confidence 46789999999999887764
No 164
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=26.61 E-value=33 Score=20.54 Aligned_cols=22 Identities=32% Similarity=0.744 Sum_probs=11.6
Q ss_pred cccCCCCcceeEEecCCCCCCCCC
Q 016833 153 QHPCNECKGTGETINDKDRCPQCK 176 (382)
Q Consensus 153 ~~~C~~C~G~G~~~~~k~~C~~C~ 176 (382)
+..|+.|+- .+......|+.|.
T Consensus 2 ~~~Cp~Cg~--~~~~~~~fC~~CG 23 (26)
T PF13248_consen 2 EMFCPNCGA--EIDPDAKFCPNCG 23 (26)
T ss_pred cCCCcccCC--cCCcccccChhhC
Confidence 345666654 2333445677664
No 165
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=26.10 E-value=59 Score=20.87 Aligned_cols=12 Identities=50% Similarity=1.104 Sum_probs=7.2
Q ss_pred ccCCCCCcccEE
Q 016833 127 MKCSGCQGSGMK 138 (382)
Q Consensus 127 ~~C~~C~G~G~~ 138 (382)
..|+.|++.|.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 356666666654
No 166
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=25.82 E-value=1.6e+02 Score=27.32 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=33.2
Q ss_pred eeeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcC
Q 016833 239 VEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 284 (382)
Q Consensus 239 ~~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g 284 (382)
-++.|+..++. =..+.+.|-+|+.+-|.+|.+++++.|+++....
T Consensus 23 ~~V~L~~ddr~-KrR~R~~td~G~evgl~LpRg~~L~dGDvL~~dd 67 (206)
T PRK13263 23 PTLTLAFDARC-KSRLAATLDTGREVAVVLPRGTVLRDGDVLVAED 67 (206)
T ss_pred eEEEECHHHhh-cceEEEECCCCCEEEEECCCCCccCCCCEEEeCC
Confidence 34566664443 3466778889999999999988899999886553
No 167
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.59 E-value=46 Score=34.95 Aligned_cols=41 Identities=15% Similarity=0.481 Sum_probs=26.1
Q ss_pred eeeeCCCCCCCCccC--CCcccCCCCCcccEEEEEEecCCccceeecccCCCCccee
Q 016833 109 RNVICTKCKGKGSKS--GASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 163 (382)
Q Consensus 109 r~~~C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G 163 (382)
....|+.|++.=... .....|..|+-+ ......|+.|++.-
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~--------------~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQ--------------EPIPKTCPQCGSED 263 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCc--------------CCCCCCCCCCCCCe
Confidence 346799998765432 223578888632 22356799998763
No 168
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=25.17 E-value=39 Score=30.21 Aligned_cols=24 Identities=33% Similarity=0.865 Sum_probs=14.4
Q ss_pred eeCCCCCCCCccCCCcccCCCCCcccE
Q 016833 111 VICTKCKGKGSKSGASMKCSGCQGSGM 137 (382)
Q Consensus 111 ~~C~~C~G~G~~~~~~~~C~~C~G~G~ 137 (382)
++|..|.+.-.+. .+||.|.+.|.
T Consensus 163 ilCtvCe~r~w~g---~~CPKCGr~G~ 186 (200)
T PF12387_consen 163 ILCTVCEGREWKG---GNCPKCGRHGK 186 (200)
T ss_pred EEEeeeecCccCC---CCCCcccCCCC
Confidence 6777777665432 34666666654
No 169
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=24.84 E-value=86 Score=27.70 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=30.1
Q ss_pred EEEEecCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCC---CCCCCcEEEEEEEE
Q 016833 254 FVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQR---PFMRGKLYIHFTVD 306 (382)
Q Consensus 254 ~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP~~~~---~~~~GdL~i~~~V~ 306 (382)
+-|.+-+|-.|.|-+ | + +...+.|+|+-..-. .-+.||++++|+.+
T Consensus 63 igi~t~~GvEiLiHi--G--i---DTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl~ 111 (156)
T COG2190 63 IGIETDEGVEILIHI--G--I---DTVKLNGEGFESLVKEGDKVKAGDPLLEFDLD 111 (156)
T ss_pred EEEEcCCCcEEEEEe--c--e---eeEEECCcceEEEeeCCCEEccCCEEEEECHH
Confidence 445666676666654 4 2 567788999865322 23579999999644
No 170
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=24.75 E-value=27 Score=29.29 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=12.3
Q ss_pred CCcchhhhcCCCCC
Q 016833 10 DNTKYYEILGVSKK 23 (382)
Q Consensus 10 ~~~~~Y~iLgv~~~ 23 (382)
...++|+||||+++
T Consensus 63 s~~eAy~ILGv~~~ 76 (116)
T PTZ00100 63 SKSEAYKILNISPT 76 (116)
T ss_pred CHHHHHHHcCCCCC
Confidence 35799999999998
No 171
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=24.41 E-value=51 Score=21.90 Aligned_cols=6 Identities=33% Similarity=1.126 Sum_probs=3.8
Q ss_pred CCCCCc
Q 016833 129 CSGCQG 134 (382)
Q Consensus 129 C~~C~G 134 (382)
||.|+.
T Consensus 2 CP~C~~ 7 (41)
T PF13453_consen 2 CPRCGT 7 (41)
T ss_pred cCCCCc
Confidence 666655
No 172
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=24.36 E-value=1.2e+02 Score=24.21 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=18.0
Q ss_pred EEEEEEEECCCCCCHHHHHHHH
Q 016833 299 LYIHFTVDFPESLSPDQCKMLE 320 (382)
Q Consensus 299 L~i~~~V~~P~~l~~~~~~~l~ 320 (382)
..|++.|.+|..+++++.+.|+
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~ 24 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLK 24 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHH
Confidence 3689999999999998766654
No 173
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=24.13 E-value=3.4e+02 Score=23.98 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=35.4
Q ss_pred CCEEEEEecCCcEEEEEeCCCcc-----ccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHh
Q 016833 251 GFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETV 322 (382)
Q Consensus 251 G~~~~i~tldG~~l~i~~p~g~v-----i~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~ 322 (382)
+..+.|...||..+...|| |.. |.+|+++.|.- .|. . ..+|+++-+ ++++|...|++.
T Consensus 44 n~~f~V~c~dG~~rLa~I~-GKmRK~IWI~~GD~VlVel--~~y-d--~~KgdIi~R--------y~~devr~Lk~~ 106 (155)
T PTZ00329 44 NGRLEAYCFDGVKRLCHIR-GKMRKRVWINIGDIILVSL--RDF-Q--DSKADVILK--------YTPDEARALKQH 106 (155)
T ss_pred CCEEEEEECCCCEEEEEee-ccceeeEEecCCCEEEEec--cCC-C--CCEEEEEEE--------cCHHHHHHHHHc
Confidence 3456666666665544443 332 56788888842 332 1 247877665 578888888775
No 174
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=23.78 E-value=78 Score=28.00 Aligned_cols=34 Identities=18% Similarity=0.458 Sum_probs=15.4
Q ss_pred ccCCCCCcccEEEEE-EecC-CccceeecccCCCCc
Q 016833 127 MKCSGCQGSGMKVSI-RHLG-PSMIQQMQHPCNECK 160 (382)
Q Consensus 127 ~~C~~C~G~G~~~~~-~~~g-pg~~~~~~~~C~~C~ 160 (382)
..|+.|+..|..... ..+. ++-+--+...|+.|+
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CG 37 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCG 37 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT-
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCC
Confidence 368888888864332 2222 122223344566664
No 175
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=23.35 E-value=38 Score=28.03 Aligned_cols=41 Identities=12% Similarity=0.392 Sum_probs=17.7
Q ss_pred ccCcceeEEee-ceeeeCCCCCCCCccCCCcccCCCCCcccE
Q 016833 97 LYNGTSKKLSL-SRNVICTKCKGKGSKSGASMKCSGCQGSGM 137 (382)
Q Consensus 97 ~~~G~~~~i~~-~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 137 (382)
++.|+...+.. +-...|..|.-..........||.|++...
T Consensus 56 ~~e~a~L~Ie~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PF01155_consen 56 ILEGAELEIEEVPARARCRDCGHEFEPDEFDFSCPRCGSPDV 97 (113)
T ss_dssp TTTT-EEEEEEE--EEEETTTS-EEECHHCCHH-SSSSSS-E
T ss_pred CccCCEEEEEecCCcEECCCCCCEEecCCCCCCCcCCcCCCc
Confidence 34444444432 234567777655543333345666666553
No 176
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=23.20 E-value=3.9e+02 Score=21.37 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=47.8
Q ss_pred CCCEEEEEecCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHhCCC
Q 016833 250 CGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 325 (382)
Q Consensus 250 ~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~lp~ 325 (382)
-|..+.+.+.||..+.|.+++......+..+-|-|+=.+ ...+-...-++|..+++.+....|-++...
T Consensus 28 ~~~~~~~~~~Dg~~v~v~l~~~~~~~~~~~vEViG~V~~-------~~~I~~~~~~~~g~~~D~~~yn~lv~l~~~ 96 (101)
T cd04479 28 DGDSLTLISSDGVNVTVELNRPLDLPISGYVEVIGKVSP-------DLTIRVLSYIDFGDDFDMDLYNELVKLSHK 96 (101)
T ss_pred cCCeEEEEcCCCCEEEEEeCCCCCcccCCEEEEEEEECC-------CCeEEEEEEEECCCccCHHHHHHHHHHHhh
Confidence 344677888898778887765433456777777776443 244556667889999998888777777643
No 177
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.99 E-value=54 Score=27.08 Aligned_cols=27 Identities=22% Similarity=0.513 Sum_probs=11.4
Q ss_pred cccCCCCcceeEEecCCCCCCCCCCce
Q 016833 153 QHPCNECKGTGETINDKDRCPQCKGEK 179 (382)
Q Consensus 153 ~~~C~~C~G~G~~~~~k~~C~~C~G~g 179 (382)
...|..|+-..........|+.|++..
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSPD 96 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS-
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCCC
Confidence 344555554444433334455555543
No 178
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=22.85 E-value=55 Score=22.07 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=5.0
Q ss_pred eeeCCCCCCCCc
Q 016833 110 NVICTKCKGKGS 121 (382)
Q Consensus 110 ~~~C~~C~G~G~ 121 (382)
...||.|.|+..
T Consensus 3 h~pCP~CGG~Dr 14 (40)
T PF08273_consen 3 HGPCPICGGKDR 14 (40)
T ss_dssp EE--TTTT-TTT
T ss_pred CCCCCCCcCccc
Confidence 455666666553
No 179
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.61 E-value=1.3e+02 Score=25.01 Aligned_cols=40 Identities=10% Similarity=0.249 Sum_probs=17.7
Q ss_pred cCcceeEEee-ceeeeCCCCCCCCccCCCc-ccCCCCCcccE
Q 016833 98 YNGTSKKLSL-SRNVICTKCKGKGSKSGAS-MKCSGCQGSGM 137 (382)
Q Consensus 98 ~~G~~~~i~~-~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~ 137 (382)
+.|+..++.. .-...|..|.-.-...... ..||.|++...
T Consensus 58 ~ega~L~Ie~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~ 99 (117)
T PRK00564 58 CKDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNV 99 (117)
T ss_pred cCCCEEEEEecCCEEEhhhCCCccccCCccCCcCcCCCCCce
Confidence 3444444432 2345677776333222211 23555555443
No 180
>PRK05580 primosome assembly protein PriA; Validated
Probab=22.59 E-value=63 Score=35.31 Aligned_cols=41 Identities=20% Similarity=0.515 Sum_probs=25.3
Q ss_pred eeeeCCCCCCCCccC--CCcccCCCCCcccEEEEEEecCCccceeecccCCCCccee
Q 016833 109 RNVICTKCKGKGSKS--GASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 163 (382)
Q Consensus 109 r~~~C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G 163 (382)
....|++|++.=... .....|..|+-+- .....|+.|++.-
T Consensus 389 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~--------------~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 389 WVAECPHCDASLTLHRFQRRLRCHHCGYQE--------------PIPKACPECGSTD 431 (679)
T ss_pred CccCCCCCCCceeEECCCCeEECCCCcCCC--------------CCCCCCCCCcCCe
Confidence 346799998854322 2235788886432 2356789997763
No 181
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=22.25 E-value=1.4e+02 Score=23.81 Aligned_cols=22 Identities=9% Similarity=0.434 Sum_probs=17.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q 016833 300 YIHFTVDFPESLSPDQCKMLET 321 (382)
Q Consensus 300 ~i~~~V~~P~~l~~~~~~~l~~ 321 (382)
.|++.|++|..+++++...++.
T Consensus 3 lV~m~V~~P~~~~~~~~~~i~a 24 (90)
T TIGR03221 3 HVRMDVNLPVDMPAEKAAAIKA 24 (90)
T ss_pred EEEEEeeCCCCCCHHHHHHHHH
Confidence 5899999999999887766643
No 182
>PRK02935 hypothetical protein; Provisional
Probab=22.06 E-value=40 Score=27.68 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=17.1
Q ss_pred cccCCCCcceeEEecCCCCCCCCC
Q 016833 153 QHPCNECKGTGETINDKDRCPQCK 176 (382)
Q Consensus 153 ~~~C~~C~G~G~~~~~k~~C~~C~ 176 (382)
+..||.|+=.-+..-+.|.|-.|+
T Consensus 70 qV~CP~C~K~TKmLGrvD~CM~C~ 93 (110)
T PRK02935 70 QVICPSCEKPTKMLGRVDACMHCN 93 (110)
T ss_pred eeECCCCCchhhhccceeecCcCC
Confidence 556777776666666668888886
No 183
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=21.85 E-value=1e+02 Score=25.48 Aligned_cols=7 Identities=29% Similarity=0.752 Sum_probs=3.8
Q ss_pred ccCCCCC
Q 016833 127 MKCSGCQ 133 (382)
Q Consensus 127 ~~C~~C~ 133 (382)
..|..|+
T Consensus 71 ~~C~~Cg 77 (113)
T PRK12380 71 AWCWDCS 77 (113)
T ss_pred EEcccCC
Confidence 3465555
No 184
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=21.67 E-value=51 Score=36.30 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=25.8
Q ss_pred eeeCCCCCCCCccCCC--cccCCCCCcccEEEEEEecCCccceeecccCCCCcce
Q 016833 110 NVICTKCKGKGSKSGA--SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGT 162 (382)
Q Consensus 110 ~~~C~~C~G~G~~~~~--~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~ 162 (382)
...|++|+..=.-... ...|..|+-+.. ....|+.|++.
T Consensus 444 v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~--------------~p~~Cp~Cgs~ 484 (730)
T COG1198 444 IAECPNCDSPLTLHKATGQLRCHYCGYQEP--------------IPQSCPECGSE 484 (730)
T ss_pred cccCCCCCcceEEecCCCeeEeCCCCCCCC--------------CCCCCCCCCCC
Confidence 3568899877554332 357888875422 25679999888
No 185
>PRK14113 urease accessory protein UreE; Provisional
Probab=21.35 E-value=2.1e+02 Score=25.06 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=33.6
Q ss_pred eeccCHHHHhCCCEEEEEecCCcEEEEEeCCCccccCCcEEEEc
Q 016833 240 EHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIN 283 (382)
Q Consensus 240 ~~~I~l~eAl~G~~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~ 283 (382)
++.+++ +...=....+.|-+|+.+-|.+|.++.+.+|+++...
T Consensus 18 ~v~L~~-~~r~r~R~R~~t~~G~e~~l~L~r~~~L~dGD~L~~d 60 (152)
T PRK14113 18 SITLDH-DTRKKGRIKSVTDNGEEIGVFLERGHPLLVGEILKTE 60 (152)
T ss_pred EEEECH-HHhhhceEEEEcCCCcEEEEECCCCcccCCCCEEEcC
Confidence 355665 4555567788889999999999999989999988554
No 186
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=20.97 E-value=1.3e+02 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=22.5
Q ss_pred EEEEEEEECCCC-CCHHHHHHHHHhCCC
Q 016833 299 LYIHFTVDFPES-LSPDQCKMLETVLPP 325 (382)
Q Consensus 299 L~i~~~V~~P~~-l~~~~~~~l~~~lp~ 325 (382)
.+.-++|+.|.. |+++|+.-|+.|...
T Consensus 62 ~~~~iEvK~p~~~ls~~Q~~~~~~l~~~ 89 (100)
T PF08774_consen 62 IFLFIEVKGPGDRLSPNQKEWIDKLREA 89 (100)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHHC
Confidence 577788999966 999999999888653
No 187
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=20.89 E-value=38 Score=28.18 Aligned_cols=24 Identities=29% Similarity=0.706 Sum_probs=15.2
Q ss_pred cccCCCCcceeEEecCCCCCCCCC
Q 016833 153 QHPCNECKGTGETINDKDRCPQCK 176 (382)
Q Consensus 153 ~~~C~~C~G~G~~~~~k~~C~~C~ 176 (382)
+..||.|+=.-+...+.+.|..|+
T Consensus 69 ~V~CP~C~K~TKmLGr~D~CM~C~ 92 (114)
T PF11023_consen 69 QVECPNCGKQTKMLGRVDACMHCK 92 (114)
T ss_pred eeECCCCCChHhhhchhhccCcCC
Confidence 455666665555555567777776
No 188
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=20.71 E-value=56 Score=21.93 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=5.2
Q ss_pred cCCCCCccc
Q 016833 128 KCSGCQGSG 136 (382)
Q Consensus 128 ~C~~C~G~G 136 (382)
.||.|..+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 466666654
No 189
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=20.67 E-value=99 Score=22.11 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=7.9
Q ss_pred ccCCCCCcccEEEEE
Q 016833 127 MKCSGCQGSGMKVSI 141 (382)
Q Consensus 127 ~~C~~C~G~G~~~~~ 141 (382)
.+||-| |.-.+...
T Consensus 4 kPCPFC-G~~~~~~~ 17 (61)
T PF14354_consen 4 KPCPFC-GSADVLIR 17 (61)
T ss_pred cCCCCC-CCcceEee
Confidence 467777 55554433
No 190
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=20.66 E-value=3.9e+02 Score=27.44 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=10.7
Q ss_pred CCCCCccEEEEEEEe
Q 016833 211 PDTVTGDIVFVLQQK 225 (382)
Q Consensus 211 ~g~~~GDl~v~i~~k 225 (382)
.|+.-||||++....
T Consensus 37 ~GG~GG~v~~~~~~~ 51 (424)
T PRK12297 37 DGGKGGSVIFVADEG 51 (424)
T ss_pred CCCCCCEEEEEECCC
Confidence 356678999987643
No 191
>PF02963 EcoRI: Restriction endonuclease EcoRI; InterPro: IPR004221 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents restriction endonucleases EcoRI, which requires magnesium as a cofactor. EcoRI recognises the DNA sequence GAATTC and cleaves after G-1 [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1ERI_A 1CL8_A 1QRH_A 1QPS_A 1CKQ_A 1QC9_B 1QRI_A 2OXV_A.
Probab=20.39 E-value=55 Score=30.31 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=23.2
Q ss_pred EEEEEecCCcEEEEEeCCCccccCCcEEEEcCCCCCCC
Q 016833 253 QFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMY 290 (382)
Q Consensus 253 ~~~i~tldG~~l~i~~p~g~vi~~g~~~~i~g~GmP~~ 290 (382)
++.|+-+|||.+.+....|. +.-=+.+.-.+.|||+.
T Consensus 162 ~~~v~rpdgrvv~l~ynsg~-lnrldrltaanygmpin 198 (257)
T PF02963_consen 162 TISVTRPDGRVVTLEYNSGM-LNRLDRLTAANYGMPIN 198 (257)
T ss_dssp -EEEEETTSEEEEE-TT-TT-T--GGGTGGGGTT--SS
T ss_pred ceeeeCCCCcEEEEEeccch-hhHHHHHhhhhcCCccc
Confidence 68899999998888766663 44445666678999985
No 192
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=20.30 E-value=37 Score=32.56 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.9
Q ss_pred CCCcchhhhcCCCCC
Q 016833 9 SDNTKYYEILGVSKK 23 (382)
Q Consensus 9 ~~~~~~Y~iLgv~~~ 23 (382)
..-.++|+||||+++
T Consensus 197 ~~~~~ay~vLgv~~~ 211 (267)
T PRK09430 197 PTLEDAYKVLGVSES 211 (267)
T ss_pred CcHHhHHHHcCCCCC
Confidence 445799999999999
No 193
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=20.25 E-value=1.4e+02 Score=24.38 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=9.6
Q ss_pred ccCCCCcceeEEecC-CCCCCCCC
Q 016833 154 HPCNECKGTGETIND-KDRCPQCK 176 (382)
Q Consensus 154 ~~C~~C~G~G~~~~~-k~~C~~C~ 176 (382)
..|.-|.++|+..+. .-.|..|.
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C~ 59 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNCG 59 (102)
T ss_pred EeccccCCCceEEECCEEEEecCC
Confidence 334444444444321 12355554
No 194
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=20.10 E-value=4.8e+02 Score=21.17 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=34.6
Q ss_pred HhCCCEEEEEecCCcEEEEEeCCCcc-----ccCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHh
Q 016833 248 ALCGFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETV 322 (382)
Q Consensus 248 Al~G~~~~i~tldG~~l~i~~p~g~v-----i~~g~~~~i~g~GmP~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~ 322 (382)
+|-+..+.|...||..+...+| |.. |++|+.+.|. +-.+ . ..+|+++-+ ++++|...|++-
T Consensus 30 ~lG~~~~~V~~~dG~~~la~i~-GK~Rk~IwI~~GD~VlVe---~~~~-~-~~kg~Iv~r--------~~~~qv~~L~~~ 95 (100)
T PRK04012 30 MLGANRVRVRCMDGVERMGRIP-GKMKKRMWIREGDVVIVA---PWDF-Q-DEKADIIWR--------YTKPQVDWLRRK 95 (100)
T ss_pred EcCCCEEEEEeCCCCEEEEEEc-hhhcccEEecCCCEEEEE---eccc-C-CCEEEEEEE--------cCHHHHHHHHHc
Confidence 3444566777778877666665 332 4556666554 1112 1 236666554 457787777653
Done!