BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016835
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQB|A Chain A, X-Ray Structure Of Yaeb From Haemophilus Influenzae.
Northeast Structural Genomics Research Consortium
(Nesgc) Target Ir47.
pdb|1XQB|B Chain B, X-Ray Structure Of Yaeb From Haemophilus Influenzae.
Northeast Structural Genomics Research Consortium
(Nesgc) Target Ir47
Length = 247
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 30/224 (13%)
Query: 79 MTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHL 138
++PI ++ + + + PRQP LV + P ++ GL ++SH W+++
Sbjct: 6 LSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIF---- 61
Query: 139 NTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIGVFATRSPHRPCPIG---LTVAKVEAVQG 194
+ + K++ VR PRL G +R+GVFA+R+ HRP P+G + + +VE + G
Sbjct: 62 ------QXDQIQQGKWQPTVRPPRLGGNQRVGVFASRATHRPNPLGXSKVELRQVECING 115
Query: 195 NTVL-LSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCW 253
N L L VDLVDGTP+ D+KPY+ Y DS A+ SFA+
Sbjct: 116 NIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQ-----------SSFAQEKLPVKMTVE 164
Query: 254 GTAGKKSLYASIDE----LQSLIKQVLSWDIRSVSQRNRPHDSL 293
T KS +E L I+QVL D R Q+ +P D +
Sbjct: 165 FTEQAKSAVKKREEKRPHLSRFIRQVLEQDPRPAYQQGKPSDRI 208
>pdb|2NV4|A Chain A, Crystal Structure Of Upf0066 Protein Af0241 In Complex
With S-Adenosylmethionine. Northeast Structural Genomics
Consortium Target Gr27
pdb|2NV4|B Chain B, Crystal Structure Of Upf0066 Protein Af0241 In Complex
With S-Adenosylmethionine. Northeast Structural Genomics
Consortium Target Gr27
Length = 147
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 16/149 (10%)
Query: 79 MTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHL 138
+ PIGVV+S F T+N PRQ +FD L + H +LY
Sbjct: 3 LKPIGVVKSPFKTQNDAPRQGRFSDAVSEIAIFDEY---ADGLHKIENLRHIIVLY---- 55
Query: 139 NTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVL 198
W + + S+ K +V VP + E GVF TRSP RP PIGL V ++ V+ N +
Sbjct: 56 -------WXDKA-SRDKLRV-VPPGETEERGVFTTRSPSRPNPIGLCVVEILEVERNRLK 106
Query: 199 LSGVDLVDGTPVLDVKPYLPYCDSIQGAE 227
+ +D +DG+PV+D+K Y P D + E
Sbjct: 107 VRWLDALDGSPVIDIKKYSPEIDCVNQLE 135
>pdb|3OKX|A Chain A, Crystal Structure Of Yaeb-Like Protein From
Rhodopseudomonas Palustris
pdb|3OKX|B Chain B, Crystal Structure Of Yaeb-Like Protein From
Rhodopseudomonas Palustris
Length = 169
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 151 KSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPV 210
+S+ ++ PR G+ G F+ RSP RP PIG ++A+V+ G + + G+D +DGTP+
Sbjct: 82 RSRRDLLLQCPRNDGDARGTFSIRSPLRPNPIGTSIARVDRRDGANLFIRGLDCLDGTPL 141
Query: 211 LDVKP 215
+D+KP
Sbjct: 142 VDLKP 146
>pdb|2YXO|A Chain A, Histidinol Phosphate Phosphatase Complexed With Sulfate
pdb|2YXO|B Chain B, Histidinol Phosphate Phosphatase Complexed With Sulfate
pdb|2YZ5|A Chain A, Histidinol Phosphate Phosphatase Complexed With Phosphate
pdb|2YZ5|B Chain B, Histidinol Phosphate Phosphatase Complexed With Phosphate
pdb|2Z4G|A Chain A, Histidinol Phosphate Phosphatase From Thermus Thermophilus
Hb8
pdb|2Z4G|B Chain B, Histidinol Phosphate Phosphatase From Thermus Thermophilus
Hb8
Length = 267
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 147 KEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVD 206
+ P+K + A + R + IG+ HRP +G +V+A+ V+
Sbjct: 196 RRPAKEVYPAPALLRRARELGIGLVLGSDAHRPEEVGFAFPEVQALLAGLGFREAYYFVE 255
Query: 207 GTPV 210
G+PV
Sbjct: 256 GSPV 259
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 116 VPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVR-----VPRLKGERIGV 170
VP AS+E + + C IL ++ T L + +E ++ + ++R R++GE +G+
Sbjct: 117 VPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGI 176
Query: 171 FATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDG 207
+G VA G VL L DG
Sbjct: 177 IGLER------VGQAVALRAKAFGFNVLFYDPYLSDG 207
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 116 VPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVR-----VPRLKGERIGV 170
VP AS+E + + C IL ++ T L + +E ++ + ++R R++GE +G+
Sbjct: 117 VPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGI 176
Query: 171 FA 172
Sbjct: 177 IG 178
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 116 VPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVR-----VPRLKGERIGV 170
VP AS+E + + C IL ++ T L + +E ++ + ++R R++GE +G+
Sbjct: 117 VPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGI 176
Query: 171 FA 172
Sbjct: 177 IG 178
>pdb|2ZWK|A Chain A, Crystal Structure Of Intimin-Tir90 Complex
pdb|2ZWK|C Chain C, Crystal Structure Of Intimin-Tir90 Complex
pdb|2ZWK|E Chain E, Crystal Structure Of Intimin-Tir90 Complex
Length = 184
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 246 FSTLDDCWGTAGKKSLYASIDELQSLIKQVLS 277
S + D WG A K S Y+S++ + + IKQ S
Sbjct: 119 LSDIYDSWGAANKYSHYSSMNSITAWIKQTSS 150
>pdb|2ZQK|A Chain A, Crystal Structure Of Intimin-Tir68 Complex
pdb|2ZQK|B Chain B, Crystal Structure Of Intimin-Tir68 Complex
pdb|3NCW|A Chain A, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|B Chain B, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|C Chain C, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|D Chain D, Crystal Structure Of Ehec O157:h7 Intimin
Length = 189
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 246 FSTLDDCWGTAGKKSLYASIDELQSLIKQVLS 277
S + D WG A K S Y+S++ + + IKQ S
Sbjct: 124 LSDIYDSWGAANKYSHYSSMNSITAWIKQTSS 155
>pdb|3NCX|A Chain A, Crystal Structure Of Ehec O157:h7 Intimin Mutant
pdb|3NCX|B Chain B, Crystal Structure Of Ehec O157:h7 Intimin Mutant
Length = 189
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 246 FSTLDDCWGTAGKKSLYASIDELQSLIKQVLS 277
S + D WG A K S Y+S++ + + IKQ S
Sbjct: 124 LSDIYDSWGAANKYSHYSSMNSITAWIKQTSS 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,481,103
Number of Sequences: 62578
Number of extensions: 425521
Number of successful extensions: 900
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 885
Number of HSP's gapped (non-prelim): 14
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)