BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016835
(381 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4V7E0|NAP1_RAT Nef-associated protein 1 OS=Rattus norvegicus GN=Nap1 PE=2 SV=1
Length = 431
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 104/165 (63%), Gaps = 15/165 (9%)
Query: 65 AQPKSENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDAS--RVPPASLE 122
AQP LE + PIG ++SCFS + GTPRQP + +RACL S P SL
Sbjct: 19 AQPA---LETGNLLTEPIGYLESCFSAKIGTPRQPSICSQSRACLKIRKSIFNNPEHSLM 75
Query: 123 GLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPI 182
GL ++SH WIL+VFH N L +KAKV+ PRL G + GVF+TRSPHRP I
Sbjct: 76 GLEQFSHVWILFVFHKNGHL----------NYKAKVQPPRLNGAKTGVFSTRSPHRPNAI 125
Query: 183 GLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAE 227
GLT+AK+E V+G V LSG+D++ GTPVLD+KPY+ DS Q E
Sbjct: 126 GLTLAKLEKVEGGAVYLSGIDMIHGTPVLDIKPYIADYDSPQNLE 170
>sp|Q562D6|NAP1_MOUSE Nef-associated protein 1 OS=Mus musculus GN=Nap1 PE=2 SV=2
Length = 431
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/159 (50%), Positives = 101/159 (63%), Gaps = 12/159 (7%)
Query: 72 LELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDAS--RVPPASLEGLGEYSH 129
LE + PIG ++SCF + GTPRQP + +RACL + P SL GL E+SH
Sbjct: 23 LEAGNLLTEPIGYLESCFPAKIGTPRQPSICSHSRACLKIRKNIFNNPEHSLMGLEEFSH 82
Query: 130 CWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKV 189
WIL+VFH N L +KAKV+ PRL G + GVF+TRSPHRP IGLT+AK+
Sbjct: 83 VWILFVFHKNGHL----------NYKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTLAKL 132
Query: 190 EAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEV 228
E V+G V LSGVD++DGTPVLD+KPY+ DS Q V
Sbjct: 133 EKVEGGAVYLSGVDMIDGTPVLDIKPYIADYDSPQNLSV 171
>sp|Q9BU70|NAP1_HUMAN Nef-associated protein 1 OS=Homo sapiens GN=C9orf156 PE=1 SV=2
Length = 441
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 103/163 (63%), Gaps = 18/163 (11%)
Query: 72 LELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACL-----VFDASRVPPASLEGLGE 126
LE + P+G ++SCFS +NGTPRQP + +RACL +F+ P SL GL +
Sbjct: 23 LETGNLLTEPVGYLESCFSAKNGTPRQPSICSYSRACLRIRKRIFNN---PEHSLMGLEQ 79
Query: 127 YSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTV 186
+SH WIL+VFH N L KAKV+ PRL G + GVF+TRSPHRP IGLT+
Sbjct: 80 FSHVWILFVFHKNGHL----------SCKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTL 129
Query: 187 AKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVP 229
AK+E V+G + LSG+D++ GTPVLD+KPY+ DS Q P
Sbjct: 130 AKLEKVEGGAIYLSGIDMIHGTPVLDIKPYIAEYDSPQNVMEP 172
>sp|Q9RPT0|RCSF1_PSEAE UPF0066 protein RcsF OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=rcsF PE=3 SV=1
Length = 231
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 118/223 (52%), Gaps = 34/223 (15%)
Query: 76 SYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPP----ASLEGLGEYSHCW 131
++ ++PIG ++SCF + PRQPLL P AR L +PP +LEGL + SH W
Sbjct: 2 THSVSPIGYIRSCFMEKFAIPRQPLLAPAARGTLEL----LPPFDQVEALEGLEQVSHVW 57
Query: 132 ILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGER-IGVFATRSPHRPCPIGLTVAKVE 190
+L++FH + + K + KVR PRL G R +GVFATR+ HRP IG +V ++E
Sbjct: 58 LLFLFH----------QALEDKPRLKVRPPRLGGNRSLGVFATRATHRPNGIGQSVVRLE 107
Query: 191 AVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLD 250
+ + LSG+DL+DGTPVLD+KPY+PY D++ A A+ +
Sbjct: 108 GFEAGRLWLSGIDLLDGTPVLDIKPYVPYADAVADAR-----------NGIADAPPPGIA 156
Query: 251 DCWGTAGKKSLYASIDELQ----SLIKQVLSWDIRSVSQRNRP 289
W ++ + L+ LI+Q L+ D R Q+ P
Sbjct: 157 VEWSEQARRQAHEHGQRLRQPVAELIEQCLAQDPRPAYQKPEP 199
>sp|O68638|RCSF2_PSEAI UPF0066 protein RcsF OS=Pseudomonas aeruginosa GN=rcsF PE=3 SV=1
Length = 240
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 19/157 (12%)
Query: 76 SYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPP----ASLEGLGEYSHCW 131
S+ ++PIG V+SCF + PRQP L P A L +PP ++EGL + SH W
Sbjct: 2 SHSISPIGHVRSCFKEKFAIPRQPQLAPAATGVLEL----LPPFDTGDAVEGLEQVSHVW 57
Query: 132 ILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVE 190
++++FH + + K + KVR PRL G + +GVFATR+ HRP +G +V K+E
Sbjct: 58 LIFLFH----------QALEDKPRLKVRPPRLGGNQSMGVFATRATHRPNGLGQSVVKLE 107
Query: 191 AVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAE 227
V+ + LSG+DL+DGTPV+D+KPY+PY D + A
Sbjct: 108 KVEPGRLWLSGIDLLDGTPVIDIKPYVPYADIVPDAH 144
>sp|P44740|Y510_HAEIN UPF0066 protein HI_0510 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=HI_0510 PE=1 SV=1
Length = 239
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 111/224 (49%), Gaps = 30/224 (13%)
Query: 79 MTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHL 138
++PI ++ + + + PRQP LV + P ++ GL ++SH W+++ F
Sbjct: 6 LSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIFQF-- 63
Query: 139 NTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLT---VAKVEAVQG 194
+ + K++ VR PRL G +R+GVFA+R+ HRP P+GL+ + +VE + G
Sbjct: 64 --------DQIQQGKWQPTVRPPRLGGNQRVGVFASRATHRPNPLGLSKVELRQVECING 115
Query: 195 NTVL-LSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCW 253
N L L VDLVDGTP+ D+KPY+ Y DS A+ SFA+
Sbjct: 116 NIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQ-----------SSFAQEKLPVKLTVE 164
Query: 254 GTAGKKSLYASIDE----LQSLIKQVLSWDIRSVSQRNRPHDSL 293
T KS +E L I+QVL D R Q+ +P D +
Sbjct: 165 FTEQAKSAVKKREEKRPHLSRFIRQVLEQDPRPAYQQGKPSDRI 208
>sp|P28634|YAEB_ECOLI UPF0066 protein YaeB OS=Escherichia coli (strain K12) GN=yaeB PE=1
SV=2
Length = 235
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 15/158 (9%)
Query: 74 LTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWIL 133
++S+ IGV++S + + PRQP LV A L A ++ GL +SH WIL
Sbjct: 1 MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIAPYNQADAVRGLEAFSHLWIL 60
Query: 134 YVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGE-RIGVFATRSPHRPCPIGLTVAKVEAV 192
+VFH +E W + VR PRL G R+GVFATRS RP PIG+++ +++ V
Sbjct: 61 FVFH--QTMEGGW--------RPTVRPPRLGGNARMGVFATRSTFRPNPIGMSLVELKEV 110
Query: 193 --QGNTVL--LSGVDLVDGTPVLDVKPYLPYCDSIQGA 226
++V+ L +DLVDGTPV+D+KPYLP+ +S+ A
Sbjct: 111 VCHKDSVILKLGSLDLVDGTPVVDIKPYLPFAESLPDA 148
>sp|Q9V0X6|Y663_PYRAB UPF0066 protein PYRAB06630 OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB06630 PE=3 SV=1
Length = 184
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 23/145 (15%)
Query: 81 PIGVVQSCFSTRNGTPRQPLLVPLARACLVFDAS-RVPPASLEGLG---EYSHCWILYVF 136
PIG++ S F P Q A A + + V P EGL E+SH ++Y F
Sbjct: 11 PIGIIHSPFKEPKDVPIQ------ASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHF 64
Query: 137 HLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNT 196
H ++KFK + P + E+ GVFATR+P RP PIG++V ++ +GN
Sbjct: 65 H-------------RAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNI 111
Query: 197 VLLSGVDLVDGTPVLDVKPYLPYCD 221
+ + VD++DGTP+LD+KPY+P D
Sbjct: 112 LRIRDVDILDGTPLLDIKPYVPEFD 136
>sp|P37752|YAEB_EIKCO UPF0066 protein in ecpA 5'region (Fragment) OS=Eikenella corrodens
PE=3 SV=1
Length = 176
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 14/100 (14%)
Query: 127 YSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGER-IGVFATRSPHRPCPIGLT 185
+SH W+ +VFH + + ++ VR PRL G R +GVFATRSP RP P+GL+
Sbjct: 2 FSHIWVQFVFHGV----------AGAGWQPLVRPPRLGGNRKMGVFATRSPFRPNPLGLS 51
Query: 186 VAKVEAVQ---GNTVLLSGVDLVDGTPVLDVKPYLPYCDS 222
+ K+E ++ G + G DL+DGTPVLD+KPYLP+ ++
Sbjct: 52 LLKLERIETEGGVRLWCGGADLLDGTPVLDIKPYLPFVEA 91
>sp|O29998|Y241_ARCFU UPF0066 protein AF_0241 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0241 PE=1 SV=1
Length = 139
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 16/149 (10%)
Query: 79 MTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHL 138
+ PIGVV+S F T+N PRQ +FD L + H +LY
Sbjct: 3 LKPIGVVKSPFKTQNDAPRQGRFSDAVSEIAIFDEY---ADGLHKIENLRHIIVLY---- 55
Query: 139 NTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVL 198
W + + S+ K +V VP + E GVF TRSP RP PIGL V ++ V+ N +
Sbjct: 56 -------WMDKA-SRDKLRV-VPPGETEERGVFTTRSPSRPNPIGLCVVEILEVERNRLK 106
Query: 199 LSGVDLVDGTPVLDVKPYLPYCDSIQGAE 227
+ +D +DG+PV+D+K Y P D + E
Sbjct: 107 VRWLDALDGSPVIDIKKYSPEIDCVNQLE 135
>sp|O27825|Y1797_METTH UPF0066 protein MTH_1797 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=MTH_1797 PE=3 SV=1
Length = 137
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 19/146 (13%)
Query: 79 MTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHL 138
+ P+GVV+S F TR+ P Q +F +++GL +SH ++LY HL
Sbjct: 8 IRPVGVVRSPFKTRSDAPAQGRFSSEESEIHIFPEYL---DAVDGLELFSHIFVLYWLHL 64
Query: 139 NTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQ-GNTV 197
++ + VPR K ++ GVF+TR+P RP P+GL + VE ++ G +
Sbjct: 65 A----------ERNVLRV---VPRGKRKKRGVFSTRAPARPNPVGLCL--VELLECGEIL 109
Query: 198 LLSGVDLVDGTPVLDVKPYLPYCDSI 223
+ G+D +DG+PV+D+KPY DS+
Sbjct: 110 RVRGLDALDGSPVIDIKPYYEDIDSL 135
>sp|O52278|VIRR_RHIRD Protein VirR OS=Rhizobium radiobacter GN=virR PE=3 SV=1
Length = 175
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 18/135 (13%)
Query: 82 IGVVQSCFSTRNGTPRQ-PLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNT 140
+G +++ + +R+ TPRQ L PL + S +L+G+ YS ILY H
Sbjct: 38 VGKIRTPWKSRSDTPRQGSELGPLC----TLEISEPWAVALKGVEAYSRLEILYWLH--- 90
Query: 141 DLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLS 200
+S + P GE G F+ R+P RP PIG ++ KVE V GN++++
Sbjct: 91 ----------ESPRDIVLLSPADDGEIHGAFSLRAPVRPNPIGTSIVKVERVSGNSIVVR 140
Query: 201 GVDLVDGTPVLDVKP 215
G+D +DGTP+LD+KP
Sbjct: 141 GLDCLDGTPLLDIKP 155
>sp|O29816|Y433_ARCFU UPF0066 protein AF_0433 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0433 PE=3 SV=1
Length = 366
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 16/150 (10%)
Query: 79 MTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHL 138
+ +GV++S + + P Q +F P +GL + C L V +
Sbjct: 6 LRQVGVIRSPYKNFSKAPHQGRFSKETVEIEIF------PEFEDGLKDIETCTHLIVLY- 58
Query: 139 NTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVL 198
W + ++ A + VP GVFATRSPHRP PIG V ++ G +
Sbjct: 59 -------WLD--RANRDALLVVPPHDSREHGVFATRSPHRPNPIGFAVVELLERDGRVLK 109
Query: 199 LSGVDLVDGTPVLDVKPYLPYCDSIQGAEV 228
+ G+D +DGTPV+D+KPY DS+ A++
Sbjct: 110 VKGLDALDGTPVVDIKPYSSTIDSVGNAKI 139
>sp|Q9HQK7|Y1115_HALSA UPF0066 protein VNG_1115H OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_1115H PE=3 SV=1
Length = 124
Score = 58.5 bits (140), Expect = 7e-08, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 64/140 (45%), Gaps = 22/140 (15%)
Query: 80 TPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLN 139
TPIG + F T PRQ + P A V+++ R LE W
Sbjct: 4 TPIGYADTRFETAADAPRQGVETPYAANVQVYESFRGGLVGLEPDDRVVVVW-------- 55
Query: 140 TDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQG--NTV 197
W + + A VR G+R GVF TRSP RP P+ +T ++ AV T+
Sbjct: 56 ------WADDADRDVLA-VR----DGDR-GVFTTRSPARPNPVCITPCELLAVDAADGTL 103
Query: 198 LLSGVDLVDGTPVLDVKPYL 217
+ GVD+ G+PVLD+KP L
Sbjct: 104 AIRGVDMAHGSPVLDLKPAL 123
>sp|Q58978|Y1583_METJA UPF0066 protein MJ1583 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ1583 PE=3 SV=1
Length = 126
Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 121 LEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPC 180
L+GL E + +L FH N EK ++ K + + P LKG VFATRSP+RP
Sbjct: 29 LDGLKEGDYIIVLVWFHKNDSEEK--RKILKVHPRGDINNP-LKG----VFATRSPYRPN 81
Query: 181 PIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPY 216
PIG K+ + N + + +D + TP++D+K +
Sbjct: 82 PIGKYTVKIHKIYRNKIFIDKIDAYNETPIIDIKIF 117
>sp|O58783|Y1056_PYRHO UPF0066 protein PH1056 OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1056
PE=3 SV=1
Length = 136
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 169 GVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVK 214
GVFATRSP RP P + V K+E GN + + +D DGTPV D+K
Sbjct: 73 GVFATRSPFRPNPYTVKVHKIE---GNRIYIDWIDAEDGTPVSDIK 115
>sp|P62599|RIMP_STRA5 Ribosome maturation factor RimP OS=Streptococcus agalactiae
serotype V (strain ATCC BAA-611 / 2603 V/R) GN=rimP PE=3
SV=1
Length = 159
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 175 SPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYL----PYCDSIQGAEVPE 230
+P P L + E + G+ VL +D G V D P D+IQ PE
Sbjct: 16 TPAIQAPFELVDVEYEKMGGDYVLSILIDKPGGITVEDTAQLTDVVSPLLDTIQPDPFPE 75
Query: 231 WVMLTIASVSFAEGFFST--LDDCWGTAGKKSLYASIDELQSLIKQVLSWD 279
ML ++S + L + G+ SLY SID+++ +LS+D
Sbjct: 76 QYMLEVSSPGLERPLKTAEALSNAVGSYINVSLYKSIDKVKIFEGDLLSFD 126
>sp|P62600|RIMP_STRA3 Ribosome maturation factor RimP OS=Streptococcus agalactiae
serotype III (strain NEM316) GN=rimP PE=3 SV=1
Length = 159
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 175 SPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYL----PYCDSIQGAEVPE 230
+P P L + E + G+ VL +D G V D P D+IQ PE
Sbjct: 16 TPAIQAPFELVDVEYEKMGGDYVLSILIDKPGGITVEDTAQLTDVVSPLLDTIQPDPFPE 75
Query: 231 WVMLTIASVSFAEGFFST--LDDCWGTAGKKSLYASIDELQSLIKQVLSWD 279
ML ++S + L + G+ SLY SID+++ +LS+D
Sbjct: 76 QYMLEVSSPGLERPLKTAEALSNAVGSYINVSLYKSIDKVKIFEGDLLSFD 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,130,822
Number of Sequences: 539616
Number of extensions: 5778823
Number of successful extensions: 13835
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13788
Number of HSP's gapped (non-prelim): 22
length of query: 381
length of database: 191,569,459
effective HSP length: 119
effective length of query: 262
effective length of database: 127,355,155
effective search space: 33367050610
effective search space used: 33367050610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)