Query 016835
Match_columns 381
No_of_seqs 230 out of 893
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 03:14:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1720 Uncharacterized conser 100.0 9E-57 2E-61 401.1 15.4 146 74-234 2-148 (156)
2 TIGR00104 YaeB_AF0241 probable 100.0 3.8E-56 8.3E-61 393.4 16.3 138 77-227 3-141 (142)
3 PF01980 UPF0066: Uncharacteri 100.0 2E-50 4.4E-55 348.3 8.4 119 91-222 1-120 (120)
4 KOG2942 Uncharacterized conser 100.0 1.1E-43 2.5E-48 341.4 10.6 228 76-359 31-342 (361)
5 KOG2942 Uncharacterized conser 100.0 7E-35 1.5E-39 280.9 -3.8 252 3-254 85-355 (361)
6 PF15086 UPF0542: Uncharacteri 74.8 15 0.00033 30.1 6.8 31 6-36 22-52 (74)
7 PF01484 Col_cuticle_N: Nemato 70.7 26 0.00057 25.3 6.8 37 12-48 8-44 (53)
8 PF09946 DUF2178: Predicted me 64.5 13 0.00028 32.1 4.8 36 16-51 32-68 (111)
9 COG2026 RelE Cytotoxic transla 64.2 33 0.00071 28.3 6.9 29 330-358 51-80 (90)
10 PF06305 DUF1049: Protein of u 64.1 31 0.00067 26.2 6.3 19 31-49 49-67 (68)
11 TIGR02116 toxin_Txe_YoeB toxin 63.1 46 0.00099 26.4 7.4 25 331-356 50-75 (80)
12 PRK11677 hypothetical protein; 60.4 30 0.00065 31.2 6.4 33 16-48 8-47 (134)
13 COG1422 Predicted membrane pro 59.7 13 0.00029 35.6 4.3 32 31-62 73-105 (201)
14 TIGR02209 ftsL_broad cell divi 45.2 1.5E+02 0.0032 23.4 7.7 34 25-58 19-54 (85)
15 PF04999 FtsL: Cell division p 44.9 1.3E+02 0.0029 24.5 7.5 45 16-60 21-67 (97)
16 PLN02316 synthase/transferase 44.0 2.1E+02 0.0045 33.8 11.3 103 30-162 437-548 (1036)
17 COG3167 PilO Tfp pilus assembl 41.1 73 0.0016 30.8 6.0 36 13-48 29-64 (211)
18 PF08105 Antimicrobial10: Metc 38.8 15 0.00033 28.1 0.9 13 170-182 33-46 (52)
19 COG4191 Signal transduction hi 36.5 1.6E+02 0.0035 32.7 8.4 20 33-52 326-345 (603)
20 PF11471 Sugarporin_N: Maltopo 36.5 1.3E+02 0.0029 23.5 5.9 13 31-43 33-45 (60)
21 TIGR03141 cytochro_ccmD heme e 36.1 96 0.0021 22.6 4.8 31 9-40 8-38 (45)
22 PF06295 DUF1043: Protein of u 35.9 1.1E+02 0.0023 27.0 5.9 21 31-51 26-46 (128)
23 PF14012 DUF4229: Protein of u 32.5 1.1E+02 0.0025 24.3 5.0 33 13-48 35-67 (69)
24 PRK00523 hypothetical protein; 32.3 2.7E+02 0.0058 22.9 7.1 59 6-66 3-67 (72)
25 PF04995 CcmD: Heme exporter p 31.5 1.8E+02 0.004 21.1 5.6 31 10-41 8-38 (46)
26 PF10309 DUF2414: Protein of u 31.3 12 0.00027 29.5 -0.6 51 192-246 3-54 (62)
27 PF05016 Plasmid_stabil: Plasm 31.0 97 0.0021 23.7 4.4 29 331-359 56-85 (90)
28 COG3114 CcmD Heme exporter pro 31.0 2.6E+02 0.0056 22.7 6.7 24 8-31 18-41 (67)
29 PRK11644 sensory histidine kin 28.0 2.5E+02 0.0054 29.6 8.1 38 27-64 268-305 (495)
30 PF04508 Pox_A_type_inc: Viral 27.7 67 0.0014 21.0 2.4 16 28-43 6-21 (23)
31 PRK10364 sensor protein ZraS; 26.6 2.6E+02 0.0056 28.2 7.7 33 12-44 197-229 (457)
32 TIGR03142 cytochro_ccmI cytoch 26.5 1.2E+02 0.0027 25.9 4.6 6 50-55 53-58 (117)
33 PRK00888 ftsB cell division pr 25.3 2.2E+02 0.0048 24.3 5.9 10 31-40 28-37 (105)
34 PF09125 COX2-transmemb: Cytoc 24.7 1.2E+02 0.0027 21.9 3.5 24 5-28 11-34 (38)
35 TIGR00053 addiction module tox 24.7 3.6E+02 0.0078 21.4 8.8 26 332-358 57-83 (89)
36 COG3105 Uncharacterized protei 23.6 3.4E+02 0.0075 24.8 6.9 26 4-30 2-27 (138)
37 TIGR00985 3a0801s04tom mitocho 23.1 4.9E+02 0.011 23.9 8.0 7 1-7 1-7 (148)
38 COG3771 Predicted membrane pro 22.9 2.3E+02 0.005 24.4 5.4 27 18-44 53-83 (97)
39 PF12808 Mto2_bdg: Micro-tubul 22.8 1.8E+02 0.0039 22.4 4.3 34 31-64 5-45 (52)
40 PF14584 DUF4446: Protein of u 22.5 3.6E+02 0.0078 24.6 7.0 10 77-86 78-87 (151)
41 PRK09174 F0F1 ATP synthase sub 22.0 5.7E+02 0.012 24.2 8.6 18 13-30 59-76 (204)
42 PF10828 DUF2570: Protein of u 21.7 4E+02 0.0086 22.7 6.8 12 8-19 2-13 (110)
43 PRK01844 hypothetical protein; 21.3 4.7E+02 0.01 21.5 7.5 58 7-66 3-66 (72)
44 PF06103 DUF948: Bacterial pro 20.7 4.2E+02 0.0091 21.3 6.5 29 17-45 9-37 (90)
45 PF14002 YniB: YniB-like prote 20.3 4.2E+02 0.0092 25.0 7.0 33 29-61 98-131 (166)
No 1
>COG1720 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9e-57 Score=401.14 Aligned_cols=146 Identities=45% Similarity=0.773 Sum_probs=136.7
Q ss_pred CCccceeEEEEEEcCCCCCCCCCCCCCCCCCceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccc
Q 016835 74 LTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSK 153 (381)
Q Consensus 74 ~~~~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~ 153 (381)
+.+++++|||+|+|||++++.+|||++++..+.+.|+|.++|. +||+|||+|||+|||||||++. .
T Consensus 2 ~~~~~~~pIG~i~sp~~~~~~~p~q~~~~~~~~~~I~l~pey~--egL~GLe~fshv~vl~~fh~a~------------~ 67 (156)
T COG1720 2 PMSICLKPIGVIRSPYKEKFDVPRQPGLVSSAEGEIELLPEYR--EGLRGLEEFSHVIVLFWFHKAD------------R 67 (156)
T ss_pred CCceeeeEeEeeccCCCCcccccccccccccceEEEEECHHHh--hhhhccccCCEEEEEEEEecCC------------C
Confidence 3467899999999999999999999999999999999999994 9999999999999999999974 2
Q ss_pred cceeeccCCCCC-ceeeeeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCCCCCCCCCCcchhhh
Q 016835 154 FKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWV 232 (381)
Q Consensus 154 ~k~~VRpPRl~G-~kvGVFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip~~Ds~~~a~~p~W~ 232 (381)
+..+|||||+++ +++|||||||||||||||||+|||++|++++|+|+|+||+|||||||||||++++|+.+++. ++|.
T Consensus 68 ~~l~Vrppr~~~~~~~GVFATRSp~RPNPIGlsvvel~~v~~~~L~v~glDa~dGTPVlDIKPy~~~~d~~~~a~-~~~~ 146 (156)
T COG1720 68 WVLTVRPPRLGGNPRVGVFATRSPFRPNPIGLSVVELLEVEGNRLYVRGLDALDGTPVLDIKPYLPFADSPPEAR-PGWA 146 (156)
T ss_pred ccceEeCCCCCCCcceeEEeccCCCCCCCceEEEEEEEEEecCEEEEeEecccCCCcEeeeeccCccccCccccc-hhhh
Confidence 578999999887 78999999999999999999999999999999999999999999999999999999988876 6898
Q ss_pred hc
Q 016835 233 ML 234 (381)
Q Consensus 233 ~~ 234 (381)
+.
T Consensus 147 e~ 148 (156)
T COG1720 147 EE 148 (156)
T ss_pred hh
Confidence 74
No 2
>TIGR00104 YaeB_AF0241 probable methyltransferase, YaeB/AF_0241 family. This protein has been characterized by crystallography in complex with S-Adenosylmethionine, making it a probable S-adenosylmethionine-dependent methyltransferase. The substrate is unknown.
Probab=100.00 E-value=3.8e-56 Score=393.43 Aligned_cols=138 Identities=40% Similarity=0.683 Sum_probs=127.9
Q ss_pred cceeEEEEEEcCCCCCCCCCCCCCCCCCceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccccce
Q 016835 77 YPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKA 156 (381)
Q Consensus 77 ~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~~k~ 156 (381)
|+++|||+|||||++++++|||+. .....++|+|+++| .+||+|||+|||||||||||++.. ..++.
T Consensus 3 ~~~~pIG~v~s~~~~~~~~Prq~~-~~~~~~~I~i~~~~--~~~L~gLe~~shi~vl~~fh~~~~----------~~~~~ 69 (142)
T TIGR00104 3 LQLKPIGVIRSPYKEKFDAPRQGR-FSDEVGEIEIFPEY--ADAVRGLEQFSHLIVLYWFDQAQR----------GKWQL 69 (142)
T ss_pred eeeEEEEEEeCCCCCccCCCCCCC-CCCccEEEEECccH--HHHhhccccCCEEEEEEEEECCCC----------ccceE
Confidence 889999999999999999999954 67788999999998 689999999999999999999853 34578
Q ss_pred eeccCCCCC-ceeeeeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCCCCCCCCCCc
Q 016835 157 KVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAE 227 (381)
Q Consensus 157 ~VRpPRl~G-~kvGVFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip~~Ds~~~a~ 227 (381)
+|+|||+++ .++|||||||||||||||||+|||++|++++|+|+|+||+|||||||||||+|++|++++|+
T Consensus 70 ~v~pp~~~~~~~~GVFatRSP~RPNPIGls~v~l~~v~~~~L~V~GlDa~DGTPVLDIKPy~~~~D~~~~a~ 141 (142)
T TIGR00104 70 TVVPPRLGGNQRRGVFATRSPHRPNPIGLSVVELLEVECNILKVGGLDALDGTPVIDIKPYSEYIDSVPNAQ 141 (142)
T ss_pred EeCCccCCCCCceEEecccCCCCCCCcEeEEEEEeEEECCEEEEeeecccCCCcEeeeeecccccCCccccc
Confidence 899998765 78999999999999999999999999999999999999999999999999999999998875
No 3
>PF01980 UPF0066: Uncharacterised protein family UPF0066; InterPro: IPR001378 This family contains a number of proteins of archaea and bacterial origin. The function of this family is unknown.; PDB: 1XQB_A 3OKX_A 2NV4_B.
Probab=100.00 E-value=2e-50 Score=348.26 Aligned_cols=119 Identities=48% Similarity=0.838 Sum_probs=95.8
Q ss_pred CCCCCCCCCCCCCCceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccccceeeccCCCCC-ceee
Q 016835 91 TRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIG 169 (381)
Q Consensus 91 ~k~g~PRQ~~l~~~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~~k~~VRpPRl~G-~kvG 169 (381)
||+|+|||+..+....++|+|+++| .+||+|||+|||||||||||++.+ ....++++||.++ .++|
T Consensus 1 ek~~~Prq~~~~~~~~~~Iei~~~y--~~~L~gLe~~shi~vl~~fh~~~~-----------~~~~l~~~Pr~~~~~~~G 67 (120)
T PF01980_consen 1 EKNGTPRQGVLASDSEAEIEIFPEY--EEGLKGLEEFSHIWVLYWFHKADT-----------DRNLLVRPPRGDGNPKVG 67 (120)
T ss_dssp SCGGS-SSCCT-TT-EEEEEE-CCC--CGGGTTGGGTSEEEEEEE-TTS--------------SSEEEE-TTTSSSS-EE
T ss_pred CCcCCCCCCCCCCCCeEEEEECccH--HHHHhccccCCEEEEEEEEecccc-----------cccccccCCCCCCCceee
Confidence 6899999999999999999999999 789999999999999999999831 3466788999975 7899
Q ss_pred eeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCCCCCC
Q 016835 170 VFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDS 222 (381)
Q Consensus 170 VFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip~~Ds 222 (381)
|||||||+||||||||+|+|++|+++.|+|+|+||+|||||||||||+|.+||
T Consensus 68 VFatRSP~RPNpIgls~v~l~~i~~~~l~v~glDa~DGTPVLDIKPy~~~~Dc 120 (120)
T PF01980_consen 68 VFATRSPHRPNPIGLSVVRLLKIDGNRLYVSGLDALDGTPVLDIKPYIPEFDC 120 (120)
T ss_dssp GGGS--S-SSS-EEEEEEEEEEEETTEEEEEC--S-TTEEEEEEEE-HHHHHS
T ss_pred EEcccCCCCCCCeecceeEEEEEEEeEEEEecccccCCCCEEEEEcccccccC
Confidence 99999999999999999999999999999999999999999999999999987
No 4
>KOG2942 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-43 Score=341.44 Aligned_cols=228 Identities=36% Similarity=0.514 Sum_probs=188.2
Q ss_pred ccceeEEEEEEcCCCCCCCCCCCCCCCCCceEEEEEcCC--CCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccc
Q 016835 76 SYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDAS--RVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSK 153 (381)
Q Consensus 76 ~~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~~~I~l~~~--~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~ 153 (381)
.|+-.|||+|.++|+.|.++||||++..-.++.|.|... -+|++.|.|||+|||+|++|.||.|-+. .
T Consensus 31 n~~n~pIG~v~~af~~K~~tprqp~I~Sr~R~~v~l~~~~fsnpehSlmgle~fSH~w~~~~fh~n~~~----------~ 100 (361)
T KOG2942|consen 31 NYTNLPIGLVIEAFTGKVKTPRQPGIHSRRRRNVPLAVAAFSNPEHSLMGLEGFSHGWTTAAFHFNLAV----------V 100 (361)
T ss_pred ccccccceeeeeccccccCCCCCcchhhhhhcceehhhhhcCCcchhhhccccccchhhhhhhhhcccc----------c
Confidence 567789999999999999999999988888888888553 2468899999999999999999998542 3
Q ss_pred cceeeccCCCCCceeeeeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCCCCCCCCC--------
Q 016835 154 FKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQG-------- 225 (381)
Q Consensus 154 ~k~~VRpPRl~G~kvGVFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip~~Ds~~~-------- 225 (381)
-+++|.|||++|.|.|||.||||||||+||||++|+++++++.|...|+||++||||||||||++.+|+...
T Consensus 101 ~kakv~pprl~g~r~gvfstRsphrp~~iGltL~k~ek~e~g~I~~~g~dm~~gtpvldikpyi~~Yd~ps~sidt~~~d 180 (361)
T KOG2942|consen 101 SKAKVFPPRLWGRREGVFSTRSPHRPKSIGLTLEKSEKEEKGRIKAQGADMEAGTPVLDIKPYITIYDMPSPSIDTIQSD 180 (361)
T ss_pred chhhccCccccccccccccccCCCCCcccchhHHHhhhhhcceEEEeccchhcCcccccccccccccCCCCCCcCccccC
Confidence 378999999999999999999999999999999999999999999999999999999999999999997721
Q ss_pred -------------------------------------------------------------------------Ccchhhh
Q 016835 226 -------------------------------------------------------------------------AEVPEWV 232 (381)
Q Consensus 226 -------------------------------------------------------------------------a~~p~W~ 232 (381)
+++|.|+
T Consensus 181 e~q~~~~tkr~P~~~rtS~l~h~e~~~Df~l~sr~e~~g~e~~~~~~gaav~~gn~~i~~~~~~p~ps~~~~~vrVP~wv 260 (361)
T KOG2942|consen 181 EFQTRNGTKRQPRTLRTSVLAHAELIFDFALVSRAELEGLEEYSHCWGAAVFHGNTDIEKLWRKPSPSKLKAKVRVPRWV 260 (361)
T ss_pred CCccccCCccCCcccccccccchheeecccccCccccCchhhhhhhheeeeeeccccccccccCCCcccccccccccccc
Confidence 2356677
Q ss_pred h-cccceeecchhhhhhhhhhhcccccccccCChHHHHHHHHHHHccCCccccccCCCccchhhccCCCCCCCCCCCCcc
Q 016835 233 M-LTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDEN 311 (381)
Q Consensus 233 ~-~~~~~V~fs~~~~~~L~~~~~~~~~~~~~~~~~~~~~~I~qVL~~DpRs~~qr~rP~~~~y~~~~~~~~g~~~~~~~~ 311 (381)
. .....|.|++++...|..... | -.....-+.+|..||..||||+|.|.. |
T Consensus 261 ~e~~~l~vtfspHae~~lg~l~a---~---~~~~q~~K~~i~~Vl~aDprsVy~rk~--y-------------------- 312 (361)
T KOG2942|consen 261 GERKGLFVTFSPHAECPLGLLVA---K---VEEIQKDKVLISGVLLADPRSVYDRKP--Y-------------------- 312 (361)
T ss_pred cccceeEEEeCCCCcCchhhhhh---h---hHHHHHHHHHhhhhhccCCceeeeecc--c--------------------
Confidence 5 344678888888877754211 1 001124578999999999999999853 1
Q ss_pred cccccccccCCCCCCCCCCeeEEEEEcceeeEEEEeCCeEEEEEEeee
Q 016835 312 QDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIVEKVSI 359 (381)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~dV~~~v~~~~~~~v~~v~~ 359 (381)
-.++|-..+.+..|.+.++ ++...|..|+.
T Consensus 313 -----------------~~qif~fsi~~a~Vtcwf~-D~~~~V~~V~~ 342 (361)
T KOG2942|consen 313 -----------------LPQIFSFSIQGASVTCWFK-DCSLAVASVTF 342 (361)
T ss_pred -----------------ccceeEEEecceEeeeeec-ccceEEEEEEe
Confidence 1378999999999999997 44666767765
No 5
>KOG2942 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.98 E-value=7e-35 Score=280.90 Aligned_cols=252 Identities=49% Similarity=0.754 Sum_probs=229.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCcCcCCCC
Q 016835 3 SKTLTLVAFAVAASAISASTAISFYIWG--------KFKRLEKSLNSTLQKCAAERQGRVRAQQALRKALAQPKSENLEL 74 (381)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~l~~~~~~~~~er~gr~rae~~lr~~l~~~~~~~~~~ 74 (381)
|++|++..|.+.+++...|.+++-|+|+ |+.+-++++..+++|-+.||.|||.|++.+++...+.++.....
T Consensus 85 SH~w~~~~fh~n~~~~~kakv~pprl~g~r~gvfstRsphrp~~iGltL~k~ek~e~g~I~~~g~dm~~gtpvldikpyi 164 (361)
T KOG2942|consen 85 SHGWTTAAFHFNLAVVSKAKVFPPRLWGRREGVFSTRSPHRPKSIGLTLEKSEKEEKGRIKAQGADMEAGTPVLDIKPYI 164 (361)
T ss_pred cchhhhhhhhhcccccchhhccCccccccccccccccCCCCCcccchhHHHhhhhhcceEEEeccchhcCcccccccccc
Confidence 7888999999999999999999999988 67777899999999999999999999999999998888766555
Q ss_pred Ccccee-E-EEEEEc-CCCCCCCCCCCC--CCCC-CceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccC
Q 016835 75 TSYPMT-P-IGVVQS-CFSTRNGTPRQP--LLVP-LARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKE 148 (381)
Q Consensus 75 ~~~~l~-P-IG~V~S-~f~~k~g~PRQ~--~l~~-~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~ 148 (381)
..|.+. | |+.+.+ +|..+.|+|||| +.+. .+.++|.|++.+.+..-++|+|+++|||..++||.|++.++.|..
T Consensus 165 ~~Yd~ps~sidt~~~de~q~~~~tkr~P~~~rtS~l~h~e~~~Df~l~sr~e~~g~e~~~~~~gaav~~gn~~i~~~~~~ 244 (361)
T KOG2942|consen 165 TIYDMPSPSIDTIQSDEFQTRNGTKRQPRTLRTSVLAHAELIFDFALVSRAELEGLEEYSHCWGAAVFHGNTDIEKLWRK 244 (361)
T ss_pred cccCCCCCCcCccccCCCccccCCccCCcccccccccchheeecccccCccccCchhhhhhhheeeeeeccccccccccC
Confidence 556665 4 999999 999999999999 5544 456789999999999999999999999999999999999999999
Q ss_pred CcccccceeeccCCCCCceeeeeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCC--CCCCCCCC
Q 016835 149 PSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLP--YCDSIQGA 226 (381)
Q Consensus 149 ~~~~~~k~~VRpPRl~G~kvGVFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip--~~Ds~~~a 226 (381)
+..++++++||.||+.|++.|+|+|+|||+|.|||+.+.+++.+...+..++|+|+.|++||||+|||.| |++++.+|
T Consensus 245 p~ps~~~~~vrVP~wv~e~~~l~vtfspHae~~lg~l~a~~~~~q~~K~~i~~Vl~aDprsVy~rk~y~~qif~fsi~~a 324 (361)
T KOG2942|consen 245 PSPSKLKAKVRVPRWVGERKGLFVTFSPHAECPLGLLVAKVEEIQKDKVLISGVLLADPRSVYDRKPYLPQIFSFSIQGA 324 (361)
T ss_pred CCcccccccccccccccccceeEEEeCCCCcCchhhhhhhhHHHHHHHHHhhhhhccCCceeeeecccccceeEEEecce
Confidence 9889999999999999999999999999999999999999999998899999999999999999999999 99999999
Q ss_pred cchhhhh---cccceeecchhhhhhhhhhhc
Q 016835 227 EVPEWVM---LTIASVSFAEGFFSTLDDCWG 254 (381)
Q Consensus 227 ~~p~W~~---~~~~~V~fs~~~~~~L~~~~~ 254 (381)
.++-|+. ..+..|.|++....++..||.
T Consensus 325 ~Vtcwf~D~~~~V~~V~~~~te~v~iT~~~g 355 (361)
T KOG2942|consen 325 SVTCWFKDCSLAVASVTFSDTESVSITSCWG 355 (361)
T ss_pred EeeeeecccceEEEEEEeccCCceeeecchh
Confidence 9999998 677899998887777777763
No 6
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=74.79 E-value=15 Score=30.10 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016835 6 LTLVAFAVAASAISASTAISFYIWGKFKRLE 36 (381)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 36 (381)
+.+-.+++.++.+.+|+++|+++.+-|+.=|
T Consensus 22 Fl~~vll~LtPlfiisa~lSwkLaK~ie~~e 52 (74)
T PF15086_consen 22 FLTTVLLILTPLFIISAVLSWKLAKAIEKEE 52 (74)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556778889999999999987554433
No 7
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=70.71 E-value=26 Score=25.35 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016835 12 AVAASAISASTAISFYIWGKFKRLEKSLNSTLQKCAA 48 (381)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 48 (381)
++++.++.++.+....++++|.+++.++..+++.++.
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~ 44 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKE 44 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777788889999999999999998876
No 8
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=64.54 E-value=13 Score=32.11 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 016835 16 SAISASTAISFYIWGKFKR-LEKSLNSTLQKCAAERQ 51 (381)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~er~ 51 (381)
.++.++..++++.++++++ +|++....+.++++.|+
T Consensus 32 i~~~~g~~~~~~~~~~v~~v~eDER~~~I~ekAs~~T 68 (111)
T PF09946_consen 32 IVFLAGILLVYLYRRRVEDVVEDERTERISEKASRRT 68 (111)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHH
Confidence 3455666666777777777 77777777777766544
No 9
>COG2026 RelE Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]
Probab=64.21 E-value=33 Score=28.27 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=22.2
Q ss_pred CeeEEEEEcceeeEEEEeCCe-EEEEEEee
Q 016835 330 DVIYHLILEGLDLSYRIDGNG-NVIVEKVS 358 (381)
Q Consensus 330 ~~~Y~~~l~~~dV~~~v~~~~-~~~v~~v~ 358 (381)
...|.++..|+-|-|.|+++. .|.|..+.
T Consensus 51 ~~~~R~RiG~YRlIy~i~d~~~~V~v~~v~ 80 (90)
T COG2026 51 SGKYRLRIGDYRLIYEIDDETLTVLVLKVG 80 (90)
T ss_pred CCeEEEEecCEEEEEEEECCceEEEEEEEe
Confidence 358999999999999999874 34444444
No 10
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=64.10 E-value=31 Score=26.21 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016835 31 KFKRLEKSLNSTLQKCAAE 49 (381)
Q Consensus 31 ~~~~l~~~l~~~~~~~~~e 49 (381)
+++.++++++...++-++.
T Consensus 49 ~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6677777666655554443
No 11
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=63.06 E-value=46 Score=26.40 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=19.5
Q ss_pred eeEEEEEc-ceeeEEEEeCCeEEEEEE
Q 016835 331 VIYHLILE-GLDLSYRIDGNGNVIVEK 356 (381)
Q Consensus 331 ~~Y~~~l~-~~dV~~~v~~~~~~~v~~ 356 (381)
.-|.++.. ++-|-|+|+++. ++|..
T Consensus 50 g~~r~rig~dyRIIY~i~~~~-~~i~~ 75 (80)
T TIGR02116 50 GYWSRRITDEHRLVYRVTDDE-VLILA 75 (80)
T ss_pred CcEEEEcCCCeEEEEEEECCE-EEEEE
Confidence 34899999 999999999884 44443
No 12
>PRK11677 hypothetical protein; Provisional
Probab=60.37 E-value=30 Score=31.15 Aligned_cols=33 Identities=9% Similarity=0.046 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 016835 16 SAISASTAISFYIWG-------KFKRLEKSLNSTLQKCAA 48 (381)
Q Consensus 16 ~~~~~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~~ 48 (381)
+++++.++|.+.+.| +.++||++|++..+.-++
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~ 47 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEE 47 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 444455455444444 566777777755544433
No 13
>COG1422 Predicted membrane protein [Function unknown]
Probab=59.70 E-value=13 Score=35.63 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhchhhHHHHHHH
Q 016835 31 KFKRLEKSLNSTLQ-KCAAERQGRVRAQQALRK 62 (381)
Q Consensus 31 ~~~~l~~~l~~~~~-~~~~er~gr~rae~~lr~ 62 (381)
|.+++.+..+.-++ .+++.|.|-..+=++|++
T Consensus 73 km~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~ 105 (201)
T COG1422 73 KMKELQKMMKEFQKEFREAQESGDMKKLKKLQE 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 77777777664433 366667675555444443
No 14
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=45.23 E-value=1.5e+02 Score=23.36 Aligned_cols=34 Identities=6% Similarity=0.008 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHhchhhHHH
Q 016835 25 SFYIWGKFKRLEKSLNSTLQKC--AAERQGRVRAQQ 58 (381)
Q Consensus 25 ~~~~~~~~~~l~~~l~~~~~~~--~~er~gr~rae~ 58 (381)
.++..-.++.+..+++...++- .++..++.++|.
T Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 19 VVSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345566666655443332 244555555554
No 15
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=44.88 E-value=1.3e+02 Score=24.47 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhchhhHHHHH
Q 016835 16 SAISASTAISFYIWGKFKRLEKSLNSTLQK--CAAERQGRVRAQQAL 60 (381)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~er~gr~rae~~l 60 (381)
+++++++...+|..-..+++..++++..++ +..+-.++.+.|+.-
T Consensus 21 ~~v~~~a~~~v~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 21 IVVLISALGVVYSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444556666665533332 333346677777643
No 16
>PLN02316 synthase/transferase
Probab=44.00 E-value=2.1e+02 Score=33.84 Aligned_cols=103 Identities=21% Similarity=0.282 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHH---HHHHHhcCCcCcCCCCCccceeEEEEEEcCCCCCCCCCCCCCCCCCce
Q 016835 30 GKFKRLEKSLNSTLQKCAAERQGRVRAQQ---ALRKALAQPKSENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLAR 106 (381)
Q Consensus 30 ~~~~~l~~~l~~~~~~~~~er~gr~rae~---~lr~~l~~~~~~~~~~~~~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~ 106 (381)
+|+++ |..++.+.+++++||+.+++||. +++..|.+++ -+|+|. . ..|+.+. .
T Consensus 437 ~~l~~-~~~~~~~~~r~k~~~~a~~~ae~k~~~~~~~l~~~~--------------~~~~te---P-~~~~aG~-----~ 492 (1036)
T PLN02316 437 RKLQE-ERRLREEAIRAKAEKTARMKAEMKEKTLKMFLLSQK--------------HIVYTE---P-LEVQAGT-----T 492 (1036)
T ss_pred HHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--------------eEEEec---C-CCCCCCC-----E
Confidence 35554 45555667778888999999985 3444455333 144442 0 1233221 2
Q ss_pred EEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccch------hhccCCcccccceeeccCC
Q 016835 107 ACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLE------KLWKEPSKSKFKAKVRVPR 162 (381)
Q Consensus 107 ~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~------~~w~~~~~~~~k~~VRpPR 162 (381)
-+|--+|.- .-|..-+-||+..-|+.-++.. +|-....+..++++|+.|-
T Consensus 493 v~v~Yn~~~------t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~~~g~~~~a~v~vP~ 548 (1036)
T PLN02316 493 VTVLYNPAN------TVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPADNGSHLKATVKVPL 548 (1036)
T ss_pred EEEEECCCC------CcCCCCceEEEEccccCcCCCCCCCCceeeeecCCCceEEEEEEccc
Confidence 233334431 1256777899988887644321 1211223345688888774
No 17
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=41.10 E-value=73 Score=30.77 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016835 13 VAASAISASTAISFYIWGKFKRLEKSLNSTLQKCAA 48 (381)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 48 (381)
+.++++++.++-.||+..|..+||..-+.+.+.+.+
T Consensus 29 lL~~~~V~~lGy~f~~s~k~eel~~~~~eEe~LKs~ 64 (211)
T COG3167 29 LLAVAAVLGLGYAFYLSGKLEELEELEAEEEELKST 64 (211)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 334456677777788888888887665554444433
No 18
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=38.83 E-value=15 Score=28.08 Aligned_cols=13 Identities=46% Similarity=0.769 Sum_probs=10.9
Q ss_pred eeecc-CCCCCCcc
Q 016835 170 VFATR-SPHRPCPI 182 (381)
Q Consensus 170 VFATR-SP~RPNPI 182 (381)
+|-|| |||-|||=
T Consensus 33 iFDTRPSPFNPN~P 46 (52)
T PF08105_consen 33 IFDTRPSPFNPNQP 46 (52)
T ss_pred CCCCCCCCCCCCCC
Confidence 59998 89999973
No 19
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=36.51 E-value=1.6e+02 Score=32.75 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 016835 33 KRLEKSLNSTLQKCAAERQG 52 (381)
Q Consensus 33 ~~l~~~l~~~~~~~~~er~g 52 (381)
.+++.+++.++|-|-+||+.
T Consensus 326 ~~~~~~a~~eLE~rV~eRTa 345 (603)
T COG4191 326 LAELQEARAELERRVEERTA 345 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888876
No 20
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=36.50 E-value=1.3e+02 Score=23.48 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 016835 31 KFKRLEKSLNSTL 43 (381)
Q Consensus 31 ~~~~l~~~l~~~~ 43 (381)
|+..||+.|+...
T Consensus 33 RLa~LE~rL~~ae 45 (60)
T PF11471_consen 33 RLAALEQRLQAAE 45 (60)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998543
No 21
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=36.07 E-value=96 Score=22.60 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016835 9 VAFAVAASAISASTAISFYIWGKFKRLEKSLN 40 (381)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 40 (381)
.|.+.++++++++..+...++++ +.+.++|+
T Consensus 8 VW~sYg~t~l~l~~li~~~~~~~-r~~~~~l~ 38 (45)
T TIGR03141 8 VWLAYGITALVLAGLILWSLLDR-RRLLRELR 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 35555555555554444444443 44444444
No 22
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.86 E-value=1.1e+02 Score=26.97 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016835 31 KFKRLEKSLNSTLQKCAAERQ 51 (381)
Q Consensus 31 ~~~~l~~~l~~~~~~~~~er~ 51 (381)
+..+|+++|+...++-++-|.
T Consensus 26 ~q~~l~~eL~~~k~el~~yk~ 46 (128)
T PF06295_consen 26 KQAKLEQELEQAKQELEQYKQ 46 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456777777755554444333
No 23
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=32.45 E-value=1.1e+02 Score=24.27 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016835 13 VAASAISASTAISFYIWGKFKRLEKSLNSTLQKCAA 48 (381)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 48 (381)
.++.++++|..+|+.+.+|.+ ++...++.++.+
T Consensus 35 ~~l~A~vis~~lS~~ll~~~R---~~~~~~ia~~~~ 67 (69)
T PF14012_consen 35 AALLALVISMPLSYVLLRRLR---DRASADIAARDE 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Confidence 344567788899999988744 344444444444
No 24
>PRK00523 hypothetical protein; Provisional
Probab=32.27 E-value=2.7e+02 Score=22.91 Aligned_cols=59 Identities=12% Similarity=0.217 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHHhchhhHHHHHHHHhcC
Q 016835 6 LTLVAFAVAASAISASTAISFYIWGKFKRLEKSLN-----STLQKCA-AERQGRVRAQQALRKALAQ 66 (381)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~~~~-~er~gr~rae~~lr~~l~~ 66 (381)
++..|+.+...++++.+++-||+.|| -+|+.|+ .+..-|+ .--.||---|+.++...++
T Consensus 3 ~~~l~I~l~i~~li~G~~~Gffiark--~~~k~l~~NPpine~mir~M~~QMGqKPSekki~Q~m~~ 67 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGIIGYFVSKK--MFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRS 67 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45567777777788888888888885 4666666 2222222 2345777777777766653
No 25
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=31.54 E-value=1.8e+02 Score=21.14 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016835 10 AFAVAASAISASTAISFYIWGKFKRLEKSLNS 41 (381)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 41 (381)
|.+.+++++++...+.. .+.+-+.+.++|++
T Consensus 8 W~sYg~t~~~l~~l~~~-~~~~~r~~~~~l~~ 38 (46)
T PF04995_consen 8 WSSYGVTALVLAGLIVW-SLRRRRRLRKELKR 38 (46)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 44444444444322222 22222455555554
No 26
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=31.31 E-value=12 Score=29.45 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=36.0
Q ss_pred EECCeEEEeeccccCCCceeeeecCCCCC-CCCCCCcchhhhhcccceeecchhhh
Q 016835 192 VQGNTVLLSGVDLVDGTPVLDVKPYLPYC-DSIQGAEVPEWVMLTIASVSFAEGFF 246 (381)
Q Consensus 192 Veg~~L~V~GlDllDGTPVLDIKPYip~~-Ds~~~a~~p~W~~~~~~~V~fs~~~~ 246 (381)
+.-+.|||+|+|=+.- =|||=|+.++ +.-+..++ +|.......|.|.++..
T Consensus 3 ~rpeavhirGvd~lsT---~dI~~y~~~y~~~~~~~~I-EWIdDtScNvvf~d~~~ 54 (62)
T PF10309_consen 3 IRPEAVHIRGVDELST---DDIKAYFSEYFDEEGPFRI-EWIDDTSCNVVFKDEET 54 (62)
T ss_pred ceeceEEEEcCCCCCH---HHHHHHHHHhcccCCCceE-EEecCCcEEEEECCHHH
Confidence 4456899999988754 4899998766 32233444 89997777888887544
No 27
>PF05016 Plasmid_stabil: Plasmid stabilisation system protein; InterPro: IPR007712 Members of this family are involved in plasmid stabilisation. The exact molecular function of this protein is not known.; PDB: 3KXE_A 1WMI_A 3KIQ_y 3KIX_y 2KC9_A 3KHA_B 3KIS_y 3KIU_y 2KC8_A 1Z8M_A ....
Probab=31.03 E-value=97 Score=23.69 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=22.0
Q ss_pred eeEEEEEcceeeEEEEeCCeEEE-EEEeee
Q 016835 331 VIYHLILEGLDLSYRIDGNGNVI-VEKVSI 359 (381)
Q Consensus 331 ~~Y~~~l~~~dV~~~v~~~~~~~-v~~v~~ 359 (381)
..|-+.+.++-|-|+++++..++ |..|.-
T Consensus 56 ~~~~~~~~~y~iiY~i~~~~~ii~i~~v~~ 85 (90)
T PF05016_consen 56 GYRRIRIGDYRIIYRIDEDNDIIYILRVLH 85 (90)
T ss_dssp TEEEEEETTEEEEEEEETTTTEEEEEEEEE
T ss_pred CcccccCceEEEEEEEecCCEEEEEEEEEc
Confidence 57888888999999998554444 776654
No 28
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=31.03 E-value=2.6e+02 Score=22.70 Aligned_cols=24 Identities=13% Similarity=0.193 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016835 8 LVAFAVAASAISASTAISFYIWGK 31 (381)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~ 31 (381)
-.|++++...++++..+.-.++.|
T Consensus 18 yVWlA~~~tll~l~~l~v~sv~qr 41 (67)
T COG3114 18 YVWLAVGMTLLPLAVLVVHSVLQR 41 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777766666665555444443
No 29
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=28.02 E-value=2.5e+02 Score=29.56 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHh
Q 016835 27 YIWGKFKRLEKSLNSTLQKCAAERQGRVRAQQALRKAL 64 (381)
Q Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~er~gr~rae~~lr~~l 64 (381)
....+.++++.+++++.+..++...--.++|+.+|+.+
T Consensus 268 ~~i~r~r~l~~~L~~~l~~~~~l~~~L~~~~e~~r~~i 305 (495)
T PRK11644 268 AGIQRQRELNQSLQKELARNRHLAERLLETEESVRRDV 305 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566776666655443322222234444444433
No 30
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=27.65 E-value=67 Score=20.98 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 016835 28 IWGKFKRLEKSLNSTL 43 (381)
Q Consensus 28 ~~~~~~~l~~~l~~~~ 43 (381)
+++||..||.+|..+.
T Consensus 6 lr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 6 LRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3459999999998764
No 31
>PRK10364 sensor protein ZraS; Provisional
Probab=26.60 E-value=2.6e+02 Score=28.23 Aligned_cols=33 Identities=12% Similarity=0.383 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016835 12 AVAASAISASTAISFYIWGKFKRLEKSLNSTLQ 44 (381)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 44 (381)
++++.++++++++++++++++++....++.+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 229 (457)
T PRK10364 197 LFALATVLLASLLAFFWYRRYLRSRQLLQDEMK 229 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666777777777765555554443
No 32
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=26.46 E-value=1.2e+02 Score=25.91 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=2.5
Q ss_pred Hhchhh
Q 016835 50 RQGRVR 55 (381)
Q Consensus 50 r~gr~r 55 (381)
.+|.+.
T Consensus 53 ~~G~l~ 58 (117)
T TIGR03142 53 AEGLLD 58 (117)
T ss_pred HcCCCC
Confidence 344443
No 33
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.35 E-value=2.2e+02 Score=24.30 Aligned_cols=10 Identities=10% Similarity=0.391 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q 016835 31 KFKRLEKSLN 40 (381)
Q Consensus 31 ~~~~l~~~l~ 40 (381)
+..+++.+++
T Consensus 28 ~~~~l~~q~~ 37 (105)
T PRK00888 28 DYWRVNDQVA 37 (105)
T ss_pred HHHHHHHHHH
Confidence 4555555555
No 34
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=24.73 E-value=1.2e+02 Score=21.94 Aligned_cols=24 Identities=21% Similarity=0.009 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 016835 5 TLTLVAFAVAASAISASTAISFYI 28 (381)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (381)
-++-+|++++++.+++-+++..|-
T Consensus 11 aYEr~Wi~F~l~mi~vFi~li~yt 34 (38)
T PF09125_consen 11 AYERGWIAFALAMILVFIALIGYT 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 367789999988766666666653
No 35
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=24.67 E-value=3.6e+02 Score=21.41 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=19.4
Q ss_pred eEEEEE-cceeeEEEEeCCeEEEEEEee
Q 016835 332 IYHLIL-EGLDLSYRIDGNGNVIVEKVS 358 (381)
Q Consensus 332 ~Y~~~l-~~~dV~~~v~~~~~~~v~~v~ 358 (381)
-|.++. .++-|-|.++++. ++|..+-
T Consensus 57 ~~r~rv~~~~Riiy~i~~~~-I~vi~ig 83 (89)
T TIGR00053 57 FRRCHIKPDVVLIYKVKDDT-LIFVRLG 83 (89)
T ss_pred CEEEeeCCCEEEEEEECCCE-EEEEEeC
Confidence 478999 5777999998775 6665553
No 36
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.65 E-value=3.4e+02 Score=24.78 Aligned_cols=26 Identities=12% Similarity=-0.135 Sum_probs=17.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016835 4 KTLTLVAFAVAASAISASTAISFYIWG 30 (381)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (381)
+|+...|++ ++.++++..+|.+.+.|
T Consensus 2 nwt~~~W~~-a~igLvvGi~IG~li~R 27 (138)
T COG3105 2 NWTFMTWEY-ALIGLVVGIIIGALIAR 27 (138)
T ss_pred chhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 567778884 44556677777777777
No 37
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=23.06 E-value=4.9e+02 Score=23.92 Aligned_cols=7 Identities=14% Similarity=0.126 Sum_probs=2.9
Q ss_pred CCcchhh
Q 016835 1 MSSKTLT 7 (381)
Q Consensus 1 ~~~~~~~ 7 (381)
|++..-+
T Consensus 1 ~~~~~~~ 7 (148)
T TIGR00985 1 MLGSNKS 7 (148)
T ss_pred CCcchHH
Confidence 4444333
No 38
>COG3771 Predicted membrane protein [Function unknown]
Probab=22.92 E-value=2.3e+02 Score=24.35 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 016835 18 ISASTAISFYIWG----KFKRLEKSLNSTLQ 44 (381)
Q Consensus 18 ~~~~~~~~~~~~~----~~~~l~~~l~~~~~ 44 (381)
++.+..+.+.+|- |+..||+++++...
T Consensus 53 ~~lgwli~g~fy~k~~l~~~~l~rqiKr~~~ 83 (97)
T COG3771 53 FALGWLICGLFYLKVRLSLMRLERQIKRLEN 83 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555554 45555555554433
No 39
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=22.82 E-value=1.8e+02 Score=22.40 Aligned_cols=34 Identities=21% Similarity=0.462 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh------chhhHH-HHHHHHh
Q 016835 31 KFKRLEKSLNSTLQKCAAERQ------GRVRAQ-QALRKAL 64 (381)
Q Consensus 31 ~~~~l~~~l~~~~~~~~~er~------gr~rae-~~lr~~l 64 (381)
+++|||..+..+.+.|..+|. +..++| +.|+..|
T Consensus 5 Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL 45 (52)
T PF12808_consen 5 RLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAEL 45 (52)
T ss_pred HHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 789999999988876654444 444454 3455544
No 40
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.50 E-value=3.6e+02 Score=24.64 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=7.9
Q ss_pred cceeEEEEEE
Q 016835 77 YPMTPIGVVQ 86 (381)
Q Consensus 77 ~~l~PIG~V~ 86 (381)
.+++-||.|+
T Consensus 78 ~~~~kvgvvR 87 (151)
T PF14584_consen 78 NCVQKVGVVR 87 (151)
T ss_pred hccceEEEEE
Confidence 4677899998
No 41
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=22.05 E-value=5.7e+02 Score=24.21 Aligned_cols=18 Identities=17% Similarity=-0.177 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016835 13 VAASAISASTAISFYIWG 30 (381)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ 30 (381)
.++..+++-.+++.++|.
T Consensus 59 ~~I~FliL~~lL~k~~~~ 76 (204)
T PRK09174 59 LAITFGLFYLFMSRVILP 76 (204)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344445566677666
No 42
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=21.74 E-value=4e+02 Score=22.68 Aligned_cols=12 Identities=8% Similarity=0.005 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 016835 8 LVAFAVAASAIS 19 (381)
Q Consensus 8 ~~~~~~~~~~~~ 19 (381)
++|+..++++++
T Consensus 2 ~~~~~~~l~~lv 13 (110)
T PF10828_consen 2 KKYIYIALAVLV 13 (110)
T ss_pred hHHHHHHHHHHH
Confidence 355555554443
No 43
>PRK01844 hypothetical protein; Provisional
Probab=21.29 E-value=4.7e+02 Score=21.52 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHHhchhhHHHHHHHHhcC
Q 016835 7 TLVAFAVAASAISASTAISFYIWGKFKRLEKSLN-----STLQKCA-AERQGRVRAQQALRKALAQ 66 (381)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~~~~-~er~gr~rae~~lr~~l~~ 66 (381)
+..|+++...++++.+++.||+.|| -+|+.|+ .+..-|+ .--.||---|+.++...++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark--~~~k~lk~NPpine~mir~Mm~QMGqkPSekki~Q~m~~ 66 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK--YMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSA 66 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3345555566777787888888885 4556665 1222222 2345777777777766543
No 44
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.71 E-value=4.2e+02 Score=21.26 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016835 17 AISASTAISFYIWGKFKRLEKSLNSTLQK 45 (381)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 45 (381)
++++-.++.+...+|+.+.-++++..++.
T Consensus 9 af~vLvi~l~~~l~~l~~~l~~~~~ti~~ 37 (90)
T PF06103_consen 9 AFAVLVIFLIKVLKKLKKTLDEVNKTIDT 37 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555555555555544443
No 45
>PF14002 YniB: YniB-like protein
Probab=20.28 E-value=4.2e+02 Score=24.97 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhchhhHHHHHH
Q 016835 29 WGKFKRLEKSLNSTLQKCAAE-RQGRVRAQQALR 61 (381)
Q Consensus 29 ~~~~~~l~~~l~~~~~~~~~e-r~gr~rae~~lr 61 (381)
+|+++.+++.++.++-...+. -.|++|+|-+-|
T Consensus 98 ~rqvk~ire~IEdqlIlE~akG~~g~treqlE~~ 131 (166)
T PF14002_consen 98 SRQVKFIREGIEDQLILEQAKGSEGRTREQLEER 131 (166)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCCccccHHHHHhc
Confidence 458888888888776554443 567888876543
Done!