Query 016835
Match_columns 381
No_of_seqs 230 out of 893
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 04:34:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xqb_A IR47, hypothetical UPF0 100.0 5.1E-75 1.7E-79 551.3 8.3 227 74-359 1-237 (247)
2 2nv4_A UPF0066 protein AF_0241 100.0 6.2E-59 2.1E-63 412.0 10.0 139 77-231 1-139 (147)
3 3okx_A YAEB-like protein RPA01 100.0 3.8E-56 1.3E-60 401.1 13.9 143 74-233 21-163 (169)
4 3g5o_B Uncharacterized protein 72.5 7.1 0.00024 31.2 5.8 77 237-359 18-95 (102)
5 3oei_C RELK (toxin RV3358); to 67.3 8.1 0.00028 31.4 5.1 80 235-356 11-91 (96)
6 4fxi_A MRNA interferase RELE; 67.0 8.3 0.00028 31.0 5.1 74 238-358 4-79 (95)
7 3bpq_B Toxin RELE3; protein to 61.8 26 0.00089 25.6 6.8 27 331-358 52-78 (88)
8 2khe_A Toxin RELE, toxin-like 54.8 57 0.002 23.5 8.0 29 331-359 54-83 (89)
9 2a6s_A Toxin YOEB; YEFM, antit 45.3 68 0.0023 23.6 6.7 24 332-356 55-79 (84)
10 1wmi_A RELE, hypothetical prot 44.2 55 0.0019 23.7 6.0 29 331-359 55-84 (90)
11 1z8m_A Conserved hypothetical 36.7 96 0.0033 22.9 6.4 26 332-358 56-82 (88)
12 2otr_A Hypothetical protein HP 32.7 1.6E+02 0.0055 22.2 8.5 28 331-358 55-84 (98)
13 3kxe_A Toxin protein PARE-1; c 25.3 2.3E+02 0.008 22.4 7.2 26 332-359 75-100 (110)
14 2w6b_A RHO guanine nucleotide 23.9 2.3E+02 0.0078 21.2 6.7 39 27-65 13-52 (56)
No 1
>1xqb_A IR47, hypothetical UPF0066 protein HI0510; structural genomics, protein structure initiative, PSI, NESG; 2.85A {Haemophilus influenzae} SCOP: e.56.1.1
Probab=100.00 E-value=5.1e-75 Score=551.34 Aligned_cols=227 Identities=31% Similarity=0.572 Sum_probs=163.9
Q ss_pred CCccceeEEEEEEcCCCCCCCCCCCCCCCCCceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccc
Q 016835 74 LTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSK 153 (381)
Q Consensus 74 ~~~~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~ 153 (381)
|+.|+++|||+|+|||++++|+|||+++++...++|+|.++|+.++||+|||+|||||||||||++.+ .+
T Consensus 1 m~~~~l~pIG~I~s~~~~k~~~PrQ~~~~~~~~~~Iel~~~y~~~~aL~GLE~fSHl~vl~~Fh~~~~----------~~ 70 (247)
T 1xqb_A 1 MNDLTLSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIFQMDQIQQ----------GK 70 (247)
T ss_dssp CCCEEECCCEEEECSBCSGGGSCSCTTTCTTCEEEEEECTTTCCTTTTTTGGGCSEEEEEEEC-----------------
T ss_pred CCceEEEEEEEEecCCCCccCCCCCCCcCCCccEEEEECCCcCCHHHHcCcccCCEEEEEEEEccCCc----------cc
Confidence 45789999999999999999999999999999999999999977899999999999999999999853 35
Q ss_pred cceeeccCCCCC-ceeeeeeccCCCCCCcceeeeEEEeEEE----CCeEEEeeccccCCCceeeeecCCCCCCCCCCCcc
Q 016835 154 FKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAVQ----GNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEV 228 (381)
Q Consensus 154 ~k~~VRpPRl~G-~kvGVFATRSP~RPNPIGLSvVkL~~Ve----g~~L~V~GlDllDGTPVLDIKPYip~~Ds~~~a~~ 228 (381)
++++|||||++| +++|||||||||||||||||+|+|++|+ +++|+|+|+||+|||||||||||+|++|++++|+.
T Consensus 71 ~~~~VrPprl~g~~~~GVFATRSP~RPNpIGlS~V~L~~ve~~~g~~~L~V~GlD~lDGTPVlDIKPYip~~D~~~~a~~ 150 (247)
T 1xqb_A 71 WQPTVRPPRLGGNQRVGVFASRATHRPNPLGMSKVELRQVECINGNIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQS 150 (247)
T ss_dssp ---------------CCGGGSCCSCCSSCEEEEEEEEEEEEEETTEEEEEEEECCSCTTCEEEEEEECCHHHHCCTTCCC
T ss_pred cceEecCCCCCCCceeeeeeccCCCCCCCcEEEEEEEEEEEccCCceEEEEecccccCCCcEeeeecccccccCcccccc
Confidence 678999999987 6899999999999999999999999999 37899999999999999999999999999999986
Q ss_pred hhhhh---cccceeecchhhhhhhhhhhcccccccccCChHHHHHHHHHHHccCCccccccCCCccchhhccCCCCCCCC
Q 016835 229 PEWVM---LTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNP 305 (381)
Q Consensus 229 p~W~~---~~~~~V~fs~~~~~~L~~~~~~~~~~~~~~~~~~~~~~I~qVL~~DpRs~~qr~rP~~~~y~~~~~~~~g~~ 305 (381)
+|++ ...++|.|+++++++|.. ++.+.++++++|+|||+|||||+||+.++
T Consensus 151 -gw~~~~~~~~~~V~f~~~a~~~l~~---------~~~~~~~l~~~i~~vL~qDPRp~y~~~~~---------------- 204 (247)
T 1xqb_A 151 -SFAQEKLPVKMTVEFTEQAKSAVKK---------REEKRPHLSRFIRQVLEQDPRPAYQQGKP---------------- 204 (247)
T ss_dssp -C-------CCCCEEECHHHHHHHHH---------HTTTSTTTTTTCCSTTC----------------------------
T ss_pred -chhhcCCccceEEEcCHHHHHhhhh---------hhcchHHHHHHHHHHHhcCCCccccCCCC----------------
Confidence 8997 245799999999988852 12334678999999999999999987432
Q ss_pred CCCCcccccccccccCCCCCCCCCCeeEEEEEcceeeEEEEeC--CeEEEEEEeee
Q 016835 306 SDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDG--NGNVIVEKVSI 359 (381)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~dV~~~v~~--~~~~~v~~v~~ 359 (381)
++++|||.|+|+||+|+|+. ++.+.|.+|..
T Consensus 205 -----------------------~~~~y~~~~~~~~V~f~v~~~~~~~~~V~~i~~ 237 (247)
T 1xqb_A 205 -----------------------SDRIYGMSLYEFNVKWRIKAGTVNCVEVIEIEK 237 (247)
T ss_dssp ------------------------CCCCEEEETTEEEEC---CEEECCBC------
T ss_pred -----------------------CCcEEEEEEcCEEEEEEEecCCCCeEEEEEEEh
Confidence 25899999999999999982 23466666663
No 2
>2nv4_A UPF0066 protein AF_0241; NESG GR27 Y241_arcfu X-RAY, structural genomics, PSI-2, protein structure initiative; HET: SAM; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=6.2e-59 Score=411.95 Aligned_cols=139 Identities=34% Similarity=0.493 Sum_probs=125.5
Q ss_pred cceeEEEEEEcCCCCCCCCCCCCCCCCCceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccccce
Q 016835 77 YPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKA 156 (381)
Q Consensus 77 ~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~~k~ 156 (381)
|+++|||+|+|||++++|+|||+++. ...++|+|+++| .+||+|||+|||||||||||++. .++.
T Consensus 1 ~~l~pIG~i~s~~~~~~~~PrQ~~~~-~~~~~I~l~~~y--~~~L~GLe~fShi~vl~~fh~~~------------~~~~ 65 (147)
T 2nv4_A 1 MILKPIGVVKSPFKTQNDAPRQGRFS-DAVSEIAIFDEY--ADGLHKIENLRHIIVLYWMDKAS------------RDKL 65 (147)
T ss_dssp CBCCCCEEEECSCCSTTTSCSSGGGC-CCEEEEEECHHH--HGGGTTGGGCSEEEEEEECTTSC------------SSCC
T ss_pred CeeEEEEEEecCCCCccCCCCCcccc-CccEEEEECCcH--HHHHhCccCCCEEEEEEEEecCC------------CcEE
Confidence 57899999999999999999999986 789999999998 69999999999999999999973 2477
Q ss_pred eeccCCCCCceeeeeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCCCCCCCCCCcchhh
Q 016835 157 KVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEW 231 (381)
Q Consensus 157 ~VRpPRl~G~kvGVFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip~~Ds~~~a~~p~W 231 (381)
+|+|||+++ ++||||||||+||||||||+|||++|++++|+|+|+||+|||||||||||+|++|++++|+.+.|
T Consensus 66 ~v~P~~~~~-~~GVFATRSP~RPNpIGlS~V~L~~veg~~L~V~glD~lDGTPVlDIKPY~p~~D~~~~a~~g~~ 139 (147)
T 2nv4_A 66 RVVPPGETE-ERGVFTTRSPSRPNPIGLCVVEILEVERNRLKVRWLDALDGSPVIDIKKYSPEIDCVNQLEGQQP 139 (147)
T ss_dssp EECCTTCCS-CEEGGGSCCSCSSSCEEEEEEEEEEEETTEEEEESCCCCTTCEEEEEEECCHHHHCCCC------
T ss_pred EecCCCCCc-eEEEEeccCCCCCCCcEEEEEEEeEEECCEEEEcCccccCCCcEEEEEcCCccccCCccCCCCcc
Confidence 899988765 99999999999999999999999999999999999999999999999999999999999997543
No 3
>3okx_A YAEB-like protein RPA0152; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, unknown function; HET: SAM; 1.80A {Rhodopseudomonas palustris}
Probab=100.00 E-value=3.8e-56 Score=401.09 Aligned_cols=143 Identities=24% Similarity=0.396 Sum_probs=128.7
Q ss_pred CCccceeEEEEEEcCCCCCCCCCCCCCCCCCceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccc
Q 016835 74 LTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSK 153 (381)
Q Consensus 74 ~~~~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~ 153 (381)
...+.+.|||+|||||++|+|+|||+++ ....++|+|+++| .+||+|||+|||||||||||++..
T Consensus 21 ~~d~~l~pIG~I~Sp~~~k~~~PRQ~~~-~~~~~~Iei~~~y--~~aL~GLe~fSHi~vl~~fh~~~~------------ 85 (169)
T 3okx_A 21 SPDAGVVFIGRIHTPWNRLKECPRHGRA-DGPVCRIEVFETW--LPALAGIDDGTLLEVFYWLHRSRR------------ 85 (169)
T ss_dssp CCSEEECCCEEEECSCSSGGGSCSSCCT-TSCCEEEEECGGG--GGGGTTCCTTCEEEEEEECTTCCS------------
T ss_pred CCCceeeEEEEEeCCCCCCCCCCCCCCC-CCceEEEEECccH--HHHHhccccCCEEEEEEEEccCCC------------
Confidence 4578999999999999999999999998 6788999999998 589999999999999999999742
Q ss_pred cceeeccCCCCCceeeeeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCCCCCCCCCCcchhhhh
Q 016835 154 FKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVM 233 (381)
Q Consensus 154 ~k~~VRpPRl~G~kvGVFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip~~Ds~~~a~~p~W~~ 233 (381)
..++++||++|.++|||||||||||||||||+|||++|++++|+|+|+||+|||||||||||++.++.....+ ++|.+
T Consensus 86 -~~~~~~Pr~~~~~~GVFATRSP~RPNPIGlS~V~L~~veg~~L~V~glD~lDGTPVlDIKPy~~~f~p~~p~~-~g~~~ 163 (169)
T 3okx_A 86 -DLLLQCPRNDGDARGTFSIRSPLRPNPIGTSIARVDRRDGANLFIRGLDCLDGTPLVDLKPDRAEFMPLAPPK-PGDFQ 163 (169)
T ss_dssp -CEEEECC---CCCEEGGGSCCSCSSSCEEEEEEEEEEEETTEEEESCCCCCTTEEEEEEEECGGGCCCCSCCC-GGGGC
T ss_pred -cceEeCCCCCCcceeEEcccCCCCCCCeEeeEEEEEEEECCEEEEeeccccCCCceEEeecCcccccCCCCCC-CCccc
Confidence 2467799999999999999999999999999999999999999999999999999999999999999887665 57765
No 4
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=72.54 E-value=7.1 Score=31.23 Aligned_cols=77 Identities=18% Similarity=0.137 Sum_probs=46.6
Q ss_pred ceeecchhhhhhhhhhhcccccccccCChHHHHHHHHHHHccCCccccccCCCccchhhccCCCCCCCCCCCCccccccc
Q 016835 237 ASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDENQDEET 316 (381)
Q Consensus 237 ~~V~fs~~~~~~L~~~~~~~~~~~~~~~~~~~~~~I~qVL~~DpRs~~qr~rP~~~~y~~~~~~~~g~~~~~~~~~~~~~ 316 (381)
..|.|++.|...|...... ....+.+.|.+.|+.||++.- +| +.|+
T Consensus 18 y~I~~t~~A~kdlkkL~~~--------~~~~I~~~I~~~L~~~P~~~g---k~-----------L~g~------------ 63 (102)
T 3g5o_B 18 YTVRFTTTARRDLHKLPPR--------ILAAVVEFAFGDLSREPLRVG---KP-----------LRRE------------ 63 (102)
T ss_dssp CEEEEEHHHHHHHTTSCHH--------HHHHHHHHHTTHHHHCTTTSS---EE-----------CCGG------------
T ss_pred EEEEECHHHHHHHHhCCHH--------HHHHHHHHHHHHHHhCcccCC---ee-----------ccCC------------
Confidence 4789999999888642100 112355555455788986311 01 1111
Q ss_pred ccccCCCCCCCCCCeeEEEEEcceeeEEEEeCCe-EEEEEEeee
Q 016835 317 SVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNG-NVIVEKVSI 359 (381)
Q Consensus 317 ~~~~~~~~~~~~~~~~Y~~~l~~~dV~~~v~~~~-~~~v~~v~~ 359 (381)
....|.++..++-|-|+|+++. .+.|..|..
T Consensus 64 ------------~~g~~r~Rig~yRiIY~i~~~~~~I~vv~Ig~ 95 (102)
T 3g5o_B 64 ------------LAGTFSARRGTYRLLYRIDDEHTTVVILRVDH 95 (102)
T ss_dssp ------------GTTCEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred ------------CceEEEEEeCCEEEEEEEeCCeEEEEEEEEec
Confidence 1246888899999999998875 344555543
No 5
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=67.30 E-value=8.1 Score=31.39 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=46.3
Q ss_pred ccceeecchhhhhhhhhhhcccccccccCChHHHHHHHHHHHccCCccccccCCCccchhhccCCCCCCCCCCCCccccc
Q 016835 235 TIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDENQDE 314 (381)
Q Consensus 235 ~~~~V~fs~~~~~~L~~~~~~~~~~~~~~~~~~~~~~I~qVL~~DpRs~~qr~rP~~~~y~~~~~~~~g~~~~~~~~~~~ 314 (381)
..+.|.|++.|...|.. |....+ .....+..+|.+ |+.||+...-+ |. .|-|+
T Consensus 11 ~~~~i~ft~~A~kdl~~-w~kldk----~~~krI~~~I~~-l~~nP~~g~gK--~e---------~Lkg~---------- 63 (96)
T 3oei_C 11 KVRSVNFDPDAWEDFLF-WLAADR----KTARRITRLIGE-IQRDPFSGIGK--PE---------PLQGE---------- 63 (96)
T ss_dssp -CCEEEECHHHHHHHHH-HHHHCH----HHHHHHHHHHHH-HHHCTTSSTTC--CE---------ECCGG----------
T ss_pred cceEEEECHHHHHHHHH-HHhcCH----HHHHHHHHHHHH-HHhCCCcCCCc--hh---------hcCCC----------
Confidence 45689999999988742 211111 012346777755 56788622211 21 01111
Q ss_pred ccccccCCCCCCCCCCeeEEEEEcc-eeeEEEEeCCeEEEEEE
Q 016835 315 ETSVCRSDQGPTPSEDVIYHLILEG-LDLSYRIDGNGNVIVEK 356 (381)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~Y~~~l~~-~dV~~~v~~~~~~~v~~ 356 (381)
-...|..++.+ +-|-|+|+++. ++|..
T Consensus 64 --------------l~g~~s~RI~~~yRivy~i~d~~-i~Il~ 91 (96)
T 3oei_C 64 --------------LSGYWSRRIDDEHRLVYRAGDDE-VTMLK 91 (96)
T ss_dssp --------------GTTCEEEESSSSCEEEEEECSSE-EEEEE
T ss_pred --------------CCCcEEEECCCCEEEEEEEECCE-EEEEE
Confidence 12469999988 99999998874 55443
No 6
>4fxi_A MRNA interferase RELE; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, B-ME on Cys50; HET: CME; 1.80A {Escherichia coli} PDB: 4fxe_D 3kha_A* 4fxh_A* 2kc8_A 2kc9_A 3kiq_y* 3kis_y* 3kiu_y* 3kix_y*
Probab=67.04 E-value=8.3 Score=30.99 Aligned_cols=74 Identities=20% Similarity=0.175 Sum_probs=44.8
Q ss_pred eeecchhhhhhhhhhhcccccccccCChHHHHHHHHHHHccCCccccccCCCccchhhccCCCCCCCCCCCCcccccccc
Q 016835 238 SVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDENQDEETS 317 (381)
Q Consensus 238 ~V~fs~~~~~~L~~~~~~~~~~~~~~~~~~~~~~I~qVL~~DpRs~~qr~rP~~~~y~~~~~~~~g~~~~~~~~~~~~~~ 317 (381)
.|.|++.|..+|...... ....+...|.+ |+.|||+.-. .+-|.
T Consensus 4 ~i~f~~~A~K~l~kLd~~--------~~~ri~~~l~~-l~~nP~~~~k--------------~L~g~------------- 47 (95)
T 4fxi_A 4 FLDFDERALKEWRKLGST--------VREQLKKKLVE-VLESPRIEAN--------------KLRGM------------- 47 (95)
T ss_dssp EEEECHHHHHHHHHSCHH--------HHHHHHHHHHH-HHHSCCCGGG--------------BCSSS-------------
T ss_pred EEEECHHHHHHHHhCCHH--------HHHHHHHHHHH-HhhCCCCcCc--------------cCcCC-------------
Confidence 688999999888653211 11346677755 5678863211 11121
Q ss_pred cccCCCCCCCCCCe-eEEEEEcceeeEEEEeCCe-EEEEEEee
Q 016835 318 VCRSDQGPTPSEDV-IYHLILEGLDLSYRIDGNG-NVIVEKVS 358 (381)
Q Consensus 318 ~~~~~~~~~~~~~~-~Y~~~l~~~dV~~~v~~~~-~~~v~~v~ 358 (381)
.+. .|.++..|+-|-|+|+++. .+.|..|-
T Consensus 48 -----------~~~y~~RlRvg~YRiiy~i~d~~~~I~Vi~IG 79 (95)
T 4fxi_A 48 -----------PDCYKIKLRSSGYRLVYQVIDEKVVVFVISVG 79 (95)
T ss_dssp -----------TTEEEEECTTSCEEEEEEEEGGGTEEEEEEEE
T ss_pred -----------CCCCeEEEEeCCeEEEEEEECCEEEEEEEEEE
Confidence 122 4688889999999998875 34444443
No 7
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=61.83 E-value=26 Score=25.63 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=21.8
Q ss_pred eeEEEEEcceeeEEEEeCCeEEEEEEee
Q 016835 331 VIYHLILEGLDLSYRIDGNGNVIVEKVS 358 (381)
Q Consensus 331 ~~Y~~~l~~~dV~~~v~~~~~~~v~~v~ 358 (381)
..|.++..++-|-|+++++. +.|..|-
T Consensus 52 ~~~~~rv~~yriiY~i~~~~-v~i~~i~ 78 (88)
T 3bpq_B 52 NYYRIRVGNYSIGIEVNGDT-IIFRRVL 78 (88)
T ss_dssp SEEEEEETTEEEEEEEETTE-EEEEEEE
T ss_pred CeEEEEECCEEEEEEEECCE-EEEEEEc
Confidence 46889999999999998885 6666664
No 8
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=54.83 E-value=57 Score=23.53 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=21.6
Q ss_pred eeEEEEEcceeeEEEEeCCe-EEEEEEeee
Q 016835 331 VIYHLILEGLDLSYRIDGNG-NVIVEKVSI 359 (381)
Q Consensus 331 ~~Y~~~l~~~dV~~~v~~~~-~~~v~~v~~ 359 (381)
..|.++..++-|-|+++++. .+.|..|..
T Consensus 54 ~~~~~rv~~yriiY~i~~~~~~v~i~~i~~ 83 (89)
T 2khe_A 54 RFWKYRVGDYRLICHIQDREATVLVLRVGH 83 (89)
T ss_dssp SCEEEEETTEEEEEEEEGGGTEEEEEEEEE
T ss_pred CeEEEEECCEEEEEEEECCEEEEEEEEEcc
Confidence 35888889999999998775 455555554
No 9
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=45.34 E-value=68 Score=23.56 Aligned_cols=24 Identities=8% Similarity=0.332 Sum_probs=17.2
Q ss_pred eEEEEEcc-eeeEEEEeCCeEEEEEE
Q 016835 332 IYHLILEG-LDLSYRIDGNGNVIVEK 356 (381)
Q Consensus 332 ~Y~~~l~~-~dV~~~v~~~~~~~v~~ 356 (381)
.|.+++.+ +-|-|+|+++ .++|..
T Consensus 55 ~~~~ri~~~yRiiY~i~~~-~v~I~~ 79 (84)
T 2a6s_A 55 FWSRRITEEHRLVYAVTDD-SLLIAA 79 (84)
T ss_dssp CEEEESSSSCEEEEEECSS-EEEEEE
T ss_pred EEEEEECCCeEEEEEEECC-EEEEEE
Confidence 47777755 8999999877 455543
No 10
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=44.24 E-value=55 Score=23.68 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=22.0
Q ss_pred eeEEEEEcceeeEEEEeCCe-EEEEEEeee
Q 016835 331 VIYHLILEGLDLSYRIDGNG-NVIVEKVSI 359 (381)
Q Consensus 331 ~~Y~~~l~~~dV~~~v~~~~-~~~v~~v~~ 359 (381)
..|.++..++-|-|+++++. .+.|..|..
T Consensus 55 ~~~~~rv~~yriiY~i~~~~~~i~i~~i~~ 84 (90)
T 1wmi_A 55 DLYRARLGDYRVIYSVNWKDKVIKILKLKP 84 (90)
T ss_dssp EEEEEECSSSEEEEEEETTTTEEEEEEEEC
T ss_pred CeEEEEECCEEEEEEEECCceEEEEEEEec
Confidence 47889999999999998774 455555553
No 11
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=36.70 E-value=96 Score=22.90 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=19.0
Q ss_pred eEEEEE-cceeeEEEEeCCeEEEEEEee
Q 016835 332 IYHLIL-EGLDLSYRIDGNGNVIVEKVS 358 (381)
Q Consensus 332 ~Y~~~l-~~~dV~~~v~~~~~~~v~~v~ 358 (381)
.|.+++ .++-|-|+|+++. ++|..+.
T Consensus 56 ~~~~ri~~dyrliY~i~~~~-v~i~~ig 82 (88)
T 1z8m_A 56 FRECHIKPDVLLVYLVKDDE-LILLRLG 82 (88)
T ss_dssp SEECCSSTTCEEEEEEETTE-EEEEEEE
T ss_pred eEEEEECCCEEEEEEEeCCE-EEEEEcC
Confidence 477777 7899999998874 5555554
No 12
>2otr_A Hypothetical protein HP0892; anti-parallel beta sheet, structural genomics, unknown funct; NMR {Helicobacter pylori}
Probab=32.73 E-value=1.6e+02 Score=22.25 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=19.6
Q ss_pred eeEEEEE-cceeeEEEEeCCe-EEEEEEee
Q 016835 331 VIYHLIL-EGLDLSYRIDGNG-NVIVEKVS 358 (381)
Q Consensus 331 ~~Y~~~l-~~~dV~~~v~~~~-~~~v~~v~ 358 (381)
..|-+++ .++-|-|+|+++. .+.|..|-
T Consensus 55 g~~~~ri~~~yriiY~i~~~~~~V~i~~ig 84 (98)
T 2otr_A 55 DFRECHLKPDLLLVYQIKKQENTLFLVRLG 84 (98)
T ss_dssp SCEEEEEETTEEEEEEEETTTTEEEEEEEE
T ss_pred CeEEEEECCCEEEEEEEcCCceEEEEEEeC
Confidence 3577787 6799999998773 44454543
No 13
>3kxe_A Toxin protein PARE-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=25.27 E-value=2.3e+02 Score=22.39 Aligned_cols=26 Identities=19% Similarity=0.046 Sum_probs=18.1
Q ss_pred eEEEEEcceeeEEEEeCCeEEEEEEeee
Q 016835 332 IYHLILEGLDLSYRIDGNGNVIVEKVSI 359 (381)
Q Consensus 332 ~Y~~~l~~~dV~~~v~~~~~~~v~~v~~ 359 (381)
...+.+.++-|-|+ +++. |.|..|--
T Consensus 75 ~R~l~v~~Y~I~Y~-~~~~-V~IlrV~h 100 (110)
T 3kxe_A 75 YRRCASGSHVVFYR-VGVR-VEIIRVLH 100 (110)
T ss_dssp EEEEEEETEEEEEE-ESSS-EEEEEEEE
T ss_pred cEEEEECCEEEEEE-eCCE-EEEEEEEE
Confidence 45566778999999 7664 66656554
No 14
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=23.93 E-value=2.3e+02 Score=21.18 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=30.2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhc
Q 016835 27 YIWG-KFKRLEKSLNSTLQKCAAERQGRVRAQQALRKALA 65 (381)
Q Consensus 27 ~~~~-~~~~l~~~l~~~~~~~~~er~gr~rae~~lr~~l~ 65 (381)
|-.+ .|.+|..+..+-.+--++|...|-|.|.-+|+.+.
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444 88888888776666667788889999999998865
Done!