Query 016836
Match_columns 381
No_of_seqs 90 out of 92
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 03:15:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04788 DUF620: Protein of un 100.0 6E-140 1E-144 977.7 21.4 243 110-360 1-245 (245)
2 PF14371 DUF4412: Domain of un 49.6 22 0.00047 27.9 3.4 17 222-238 4-20 (89)
3 COG5017 Uncharacterized conser 49.3 5.7 0.00012 36.8 0.1 31 291-325 55-86 (161)
4 KOG2833 Mevalonate pyrophospha 44.8 18 0.00038 37.6 2.7 71 141-211 156-250 (395)
5 PRK09455 rseB anti-sigma E fac 40.3 29 0.00062 34.8 3.4 46 218-275 128-173 (319)
6 PF09865 DUF2092: Predicted pe 40.1 1.4E+02 0.0031 28.5 7.8 90 152-241 44-150 (214)
7 COG4081 Uncharacterized protei 34.0 15 0.00033 33.7 0.3 25 61-95 5-29 (148)
8 KOG0968 DNA polymerase zeta, c 32.8 2.1 4.5E-05 49.8 -6.4 80 251-349 758-842 (1488)
9 smart00392 PROF Profilin. Bind 30.7 94 0.002 26.7 4.6 66 172-250 21-87 (129)
10 KOG0189 Phosphoadenosine phosp 26.0 28 0.00061 34.4 0.7 35 146-210 117-151 (261)
11 cd06911 VirB9_CagX_TrbG VirB9/ 20.7 2.6E+02 0.0057 22.4 5.2 52 273-325 22-77 (86)
No 1
>PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins.
Probab=100.00 E-value=5.8e-140 Score=977.67 Aligned_cols=243 Identities=63% Similarity=1.059 Sum_probs=234.1
Q ss_pred eEEecceeeeeecccCCCCCcccccccCccCCCCCccccceEEEeeecCCceEEEEEeeCeeeeecCCCceeeecCCCCc
Q 016836 110 IFATGKVTMGMGDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNFAWRHTPWLG 189 (381)
Q Consensus 110 myA~GkVrM~~~sE~~~~~~~v~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvV~G~KV~AGsdGkvaWR~Tpw~g 189 (381)
|||||||||++ +||+++++++++ .+.++.+|+||||||||+|||||||||||||||+||||||||||||||||
T Consensus 1 mya~GkVrM~~-se~~~~~~~~~~------~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~g 73 (245)
T PF04788_consen 1 MYAMGKVRMAA-SEFEGGSGSVTK------VGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQG 73 (245)
T ss_pred CceeeeEEEEE-EeeccCCccccc------cccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCcccc
Confidence 89999999999 688887666542 24667899999999999999999999999999999999999999999999
Q ss_pred CcccCCCCchhhhhhcCCCchhhhhccccceeeeeeecCCcceeEEEeccCchhhcccCCCCceEEEeeeecccccccce
Q 016836 190 SHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGL 269 (381)
Q Consensus 190 sHAakGp~RPLRR~lQGLDPr~tA~lF~~A~ciGEk~i~gedCFiLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGL 269 (381)
+||||||||||||||||||||+|||||++|+|||||+|||||||||||+||+++|++||++++|||||++||||||||||
T Consensus 74 ~HAakGp~RPLRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGL 153 (245)
T PF04788_consen 74 SHAAKGPPRPLRRFLQGLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGL 153 (245)
T ss_pred chhhcCCCchHHHHHhhcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecceeeeecC--CCCCCeEEeeccccccccccccCceeeecCCcceEEEEeeccccccCccccceeeeeeeeeeec
Q 016836 270 LVYLEDSYLTRIQS--PGTQPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAF 347 (381)
Q Consensus 270 Lv~lEDs~Ltriqs--~~~~~vyWETt~eS~i~DYR~VdGv~IAH~G~t~vtl~RfGe~~~~~~~~TrMEE~WtIeeV~F 347 (381)
|||||||||||||+ +++++|||||||||+|+|||+||||||||+|||+||||||||++++| ++|||||+|+||||||
T Consensus 154 Lv~lEDS~L~ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h-~rTrmEE~W~Ieev~F 232 (245)
T PF04788_consen 154 LVQLEDSHLTRIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSH-SRTRMEETWTIEEVDF 232 (245)
T ss_pred eeeeecceeEEeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccC-ceeeEeeeeEeeeEEe
Confidence 99999999999999 88999999999999999999999999999999999999999998755 8899999999999999
Q ss_pred ccCCCCCcccCCC
Q 016836 348 NVAGLSLDCFIPP 360 (381)
Q Consensus 348 NV~GLS~DcFiPP 360 (381)
|||||||||||||
T Consensus 233 NV~GLS~DcFiPP 245 (245)
T PF04788_consen 233 NVPGLSMDCFIPP 245 (245)
T ss_pred ccCCcchhcccCC
Confidence 9999999999999
No 2
>PF14371 DUF4412: Domain of unknown function (DUF4412)
Probab=49.60 E-value=22 Score=27.89 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=15.5
Q ss_pred eeeeecCCcceeEEEec
Q 016836 222 VGEKRISDIDCFVLKLA 238 (381)
Q Consensus 222 iGEk~i~gedCFiLkl~ 238 (381)
.|.|+|+|-+|-..++.
T Consensus 4 tGt~tI~G~~c~ky~v~ 20 (89)
T PF14371_consen 4 TGTKTIAGYKCEKYEVT 20 (89)
T ss_pred CCCEEECCEEeEEEEEE
Confidence 58899999999999986
No 3
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=49.32 E-value=5.7 Score=36.85 Aligned_cols=31 Identities=29% Similarity=0.564 Sum_probs=23.5
Q ss_pred EeeccccccccccccCceeeecCCc-ceEEEEeecc
Q 016836 291 WETTMATKIEDYRAIEGVMIAHSGQ-SSVIITRFGD 325 (381)
Q Consensus 291 WETt~eS~i~DYR~VdGv~IAH~G~-t~vtl~RfGe 325 (381)
-++.|+|.|.||| |.|+|+|- |..+++|-+.
T Consensus 55 ~~~kiQsli~dar----IVISHaG~GSIL~~~rl~k 86 (161)
T COG5017 55 KEEKIQSLIHDAR----IVISHAGEGSILLLLRLDK 86 (161)
T ss_pred hHHHHHHHhhcce----EEEeccCcchHHHHhhcCC
Confidence 5788999999999 89999986 3344455443
No 4
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=44.83 E-value=18 Score=37.60 Aligned_cols=71 Identities=27% Similarity=0.299 Sum_probs=50.0
Q ss_pred CCCCccccceEEEeeec-------------------CCceEEEEEeeC-eeeeecCCCceeeecCCCCcCcccCC--CCc
Q 016836 141 SLGGVSEKGCFVMWQMV-------------------PNKWLIELVVGG-HKVVAGSDGNFAWRHTPWLGSHAAKG--SVR 198 (381)
Q Consensus 141 ~~~~~~e~GgFVlWQ~~-------------------Pd~W~~ELvV~G-~KV~AGsdGkvaWR~Tpw~gsHAakG--p~R 198 (381)
+...++.-||||.|+|. ||+-++=|||++ +|-.+-.-|--.=..|+-+--|-.+- |.|
T Consensus 156 GSACRSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~R 235 (395)
T KOG2833|consen 156 GSACRSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQR 235 (395)
T ss_pred chhhhhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHHhHHHHHHHHhhhHHH
Confidence 45567899999999763 778899999996 77666667776666777766666554 444
Q ss_pred h--hhhhhcCCCchh
Q 016836 199 P--LRRALQGLDPIA 211 (381)
Q Consensus 199 P--LRR~lQGLDPr~ 211 (381)
= +|+++.-=|--+
T Consensus 236 i~~m~eaI~~rDF~~ 250 (395)
T KOG2833|consen 236 IQQMREAIRERDFES 250 (395)
T ss_pred HHHHHHHHHhcCHHH
Confidence 4 366666555443
No 5
>PRK09455 rseB anti-sigma E factor; Provisional
Probab=40.33 E-value=29 Score=34.78 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=33.2
Q ss_pred cceeeeeeecCCcceeEEEeccCchhhcccCCCCceEEEeeeecccccccceeEEeec
Q 016836 218 TAQYVGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLED 275 (381)
Q Consensus 218 ~A~ciGEk~i~gedCFiLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lED 275 (381)
+-...|+.+|+|-+|++|.+.+.-.. |...-=|-++.||||+|.+-
T Consensus 128 ~~~~~g~~rVaGr~~~vi~~~PkD~~------------rY~~~lwiD~et~llLk~~~ 173 (319)
T PRK09455 128 DFISVGRTRIADRLCQVIRIVPKDGT------------RYSYIVWIDEESKLPLRVDL 173 (319)
T ss_pred eEEEccccEECCeeEEEEEEEECCCC------------CcceEEEEEcCCCCEEeEEE
Confidence 45778999999999999999886321 11111235789999998764
No 6
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=40.07 E-value=1.4e+02 Score=28.48 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=66.7
Q ss_pred EEeeecCCceEEEEEeeCeeeeecCCCceeeecCCCCcCcccCCCCchh----hhhhc--CCC-----------chhhhh
Q 016836 152 VMWQMVPNKWLIELVVGGHKVVAGSDGNFAWRHTPWLGSHAAKGSVRPL----RRALQ--GLD-----------PIAVAS 214 (381)
Q Consensus 152 VlWQ~~Pd~W~~ELvV~G~KV~AGsdGkvaWR~Tpw~gsHAakGp~RPL----RR~lQ--GLD-----------Pr~tA~ 214 (381)
-+|-..||+..++..=++.....=.|||...=..|-+..=|..--|-.| .++.+ |++ +.....
T Consensus 44 ~v~v~RPdklr~~~~gd~~~~~~~yDGkt~Tl~~~~~n~Ya~~~aP~tid~~i~~l~~~~gi~~P~aDll~~d~~~~l~~ 123 (214)
T PF09865_consen 44 TVTVQRPDKLRIDRRGDGADREFYYDGKTFTLYDPNQNVYAQADAPGTIDAAIDYLRDKYGIELPLADLLYSDPYDALMD 123 (214)
T ss_pred EEEEeCCCeEEEEEEcCCcceEEEECCCEEEEEcCcCCeEEeccCCCCHHHHHHHHHHhhCCCccHHHhcccCchHHHhh
Confidence 4677889999999966679999999999999999998877765544443 22222 332 222334
Q ss_pred ccccceeeeeeecCCcceeEEEeccCc
Q 016836 215 VFSTAQYVGEKRISDIDCFVLKLAANQ 241 (381)
Q Consensus 215 lF~~A~ciGEk~i~gedCFiLkl~a~~ 241 (381)
=+.+|.+||...|+|..|.-|-...+.
T Consensus 124 ~v~~~~~vG~~~V~G~~c~HlAfr~~~ 150 (214)
T PF09865_consen 124 GVTSAKYVGQSVVGGVECDHLAFRNDD 150 (214)
T ss_pred cceEEEEeeeEEECCEEeEEEEEecCC
Confidence 456789999999999999888776553
No 7
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.99 E-value=15 Score=33.74 Aligned_cols=25 Identities=40% Similarity=0.717 Sum_probs=20.3
Q ss_pred HHHhhCCCCcccCCCCCCCCccccchhHHHHHhHh
Q 016836 61 LLSVLGCPLFPVPLLPKQPLNQVCSSAQYIIQHFT 95 (381)
Q Consensus 61 LL~vvGaPL~P~~v~~~~p~~~~~SsAqYIvqQy~ 95 (381)
+|-+||||=||.+ .|||-|.-.||.
T Consensus 5 vlv~lGCPeiP~q----------issaiYls~klk 29 (148)
T COG4081 5 VLVSLGCPEIPPQ----------ISSAIYLSHKLK 29 (148)
T ss_pred EEEEecCCCCCcc----------chHHHHHHHHhh
Confidence 4568999999988 688888887774
No 8
>KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair]
Probab=32.78 E-value=2.1 Score=49.80 Aligned_cols=80 Identities=30% Similarity=0.456 Sum_probs=50.4
Q ss_pred CceEEEeeeecccccccceeEE--eecceeeeecCCCCCCeEEeecccccccc---ccccCceeeecCCcceEEEEeecc
Q 016836 251 TAEMIKHVIFGYFSQRSGLLVY--LEDSYLTRIQSPGTQPTYWETTMATKIED---YRAIEGVMIAHSGQSSVIITRFGD 325 (381)
Q Consensus 251 ~~EiirH~~~GYFSQrtGLLv~--lEDs~Ltriqs~~~~~vyWETt~eS~i~D---YR~VdGv~IAH~G~t~vtl~RfGe 325 (381)
..||++|. ||||-+|.-+|=. .+| |-|++.. +++.++-=+. |-..-|||| .||-++.+.|-=-
T Consensus 758 GyEi~~~S-WGyl~eR~~~l~~di~~~--lsRv~~~-------~~~n~~d~~~ewg~tt~S~i~i--~GR~~lNiWRilR 825 (1488)
T KOG0968|consen 758 GYEIHNLS-WGYLIERAKLLGIDISRD--LSRVKCY-------EKTNESDDEREWGYTTISGINI--VGRHVLNIWRILR 825 (1488)
T ss_pred eeeecccc-hHHHHHHHHHhcchHHHH--HhcCCCh-------hhhhhhhhhhhccceeeccccc--cchhhhhHHHHHh
Confidence 47999998 9999999655421 123 5566553 2333333333 556668888 5888888887533
Q ss_pred ccccCccccceeeeeeeeeeeccc
Q 016836 326 NLKAGLSITRMEETWTIDDLAFNV 349 (381)
Q Consensus 326 ~~~~~~~~TrMEE~WtIeeV~FNV 349 (381)
+.. ..+ ..|||.|.|||
T Consensus 826 ~eV-~L~------nYtlEsv~~nV 842 (1488)
T KOG0968|consen 826 SEV-ALT------NYTLESVVFNV 842 (1488)
T ss_pred hhh-hhh------hccHHHHHHHH
Confidence 211 111 47899999997
No 9
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=30.73 E-value=94 Score=26.74 Aligned_cols=66 Identities=14% Similarity=0.319 Sum_probs=34.3
Q ss_pred eeecCCCceeeecCCCCcC-cccCCCCchhhhhhcCCCchhhhhccccceeeeeeecCCcceeEEEeccCchhhcccCCC
Q 016836 172 VVAGSDGNFAWRHTPWLGS-HAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAANQTDLADRSDS 250 (381)
Q Consensus 172 V~AGsdGkvaWR~Tpw~gs-HAakGp~RPLRR~lQGLDPr~tA~lF~~A~ciGEk~i~gedCFiLkl~a~~~~l~arS~~ 250 (381)
.+.|.||. +|-+||--.. .....-...|-.+++ || +.+|.+-. .++|+.||+|+-+ ...+.++.+.
T Consensus 21 aI~g~dGs-vWA~s~g~~f~~~~~~E~~~i~~~f~--~~---~~~~~~Gi-----~l~G~Ky~~~~~d--~~~i~~kk~~ 87 (129)
T smart00392 21 AIGGKDGS-VWAASAGGNFQKITPEEIAAIAALFN--SL---AAVFSNGL-----TLGGQKYMVIRAD--DRSIMGKKGA 87 (129)
T ss_pred EEEeCCCC-eeeccCCCCCCcCCHHHHHHHHHHcc--Cc---chhccCCe-----EECCeEEEEEEec--CcEEEeecCC
Confidence 35677886 5988885211 111122222333332 22 23333322 5778899999864 4455665544
No 10
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=26.01 E-value=28 Score=34.36 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=27.6
Q ss_pred cccceEEEeeecCCceEEEEEeeCeeeeecCCCceeeecCCCCcCcccCCCCchhhhhhcCCCch
Q 016836 146 SEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNFAWRHTPWLGSHAAKGSVRPLRRALQGLDPI 210 (381)
Q Consensus 146 ~e~GgFVlWQ~~Pd~W~~ELvV~G~KV~AGsdGkvaWR~Tpw~gsHAakGp~RPLRR~lQGLDPr 210 (381)
..+|||-+|-..-+.-|.= --+||+|||+.||+-+
T Consensus 117 ~~K~~~~~~E~~~q~~~~l------------------------------~KV~P~~RA~k~L~v~ 151 (261)
T KOG0189|consen 117 ASKGGFSLWEDDHQEYDRL------------------------------RKVEPARRAYKGLNVK 151 (261)
T ss_pred HhccchhheecCchhhhhh------------------------------hhccHHHHHhhcccee
Confidence 5789999998877665532 1379999999999975
No 11
>cd06911 VirB9_CagX_TrbG VirB9/CagX/TrbG, a component of the type IV secretion system. VirB9 is a component of the type IV secretion system, which is employed by pathogenic bacteria to export virulence proteins directly from the bacterial cytoplasm into the host cell. Unlike the more common type III secretion system, type IV systems evolved from the conjugative apparatus, which is used to transfer DNA between cells. VirB9 was initially identified as an essential virulence gene on the Agrobacterium tumefaciens Ti plasmid. In the pilin-like conjugative structure, VirB9 appears to form a stabilizing complex in the outer membrane, by interacting with the lipoprotein VirB7. The heterodimer has been shown to stabilize other components of the type IV system. This alignment model spans the C-terminal domain of VirB9. CagX is a component of the Helicobacter pylori cag PAI-encoded type IV secretion system. Some other members of this family are involved in conjugal transfer to T-DNA of plant cells
Probab=20.67 E-value=2.6e+02 Score=22.41 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=35.0
Q ss_pred eecceeeeecCCC---CCCeEEeecc-ccccccccccCceeeecCCcceEEEEeecc
Q 016836 273 LEDSYLTRIQSPG---TQPTYWETTM-ATKIEDYRAIEGVMIAHSGQSSVIITRFGD 325 (381)
Q Consensus 273 lEDs~Ltriqs~~---~~~vyWETt~-eS~i~DYR~VdGv~IAH~G~t~vtl~RfGe 325 (381)
+.|-..|-|+-+. -.+||....- ...+-.||..+++.|.|+-... .+.|.|+
T Consensus 22 ~DDG~~Tyi~f~~~~~~Pavf~~~~~g~~~lvn~~~~~~~~vV~~v~~~-~~Lr~G~ 77 (86)
T cd06911 22 FDDGRFTYFQFPPNAELPAIFVVDPDGKESLVNYRVEGNYIVVDGVAPK-LVLRLGD 77 (86)
T ss_pred EECCEEEEEECCCCCCCCcEEEECCCCCEEeceeEEECCEEEEeccCCc-EEEEeCC
Confidence 4566667676653 2479998774 4456679999999999985444 3346664
Done!