BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016837
(381 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C6BVJ9|SYH_DESAD Histidine--tRNA ligase OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=hisS PE=3
SV=1
Length = 412
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 40 IHALHKELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRTSS 99
+ L EL+ + CP C + A+ +S D R +CD R + + + L S
Sbjct: 157 LEKLSFELNSLGCPECRPKYNQALKDFLASLD---REQLCDDCQRRMDT-NPLRVLDCKS 212
Query: 100 RNNTTLSHSSPSHPQHNKGPGENNIQQADRLLEREG-EGNLNPEAGNSQTFHERTELEGL 158
+N L+ ++P+ P H G + L++ G + LNP +++RT E
Sbjct: 213 KNCKALTENAPTLPDHLCGECREHFDTVIALIDEAGLQYTLNPRLVRGLDYYQRTAFEVT 272
Query: 159 DVDNSSESILS 169
D +++ ++
Sbjct: 273 SGDIGAQTAVA 283
>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana
GN=FKBP62 PE=1 SV=2
Length = 551
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 121 ENNIQQA-DRLLEREGEGNLNPEAGNSQTFH-ERTELEGLDVDNSSESILSLKCPMCRGA 178
E IQQ + L +EGEG PE G+ H T L+G D+S + K + +G
Sbjct: 33 EKEIQQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQ 92
Query: 179 IL-GWEV 184
++ GW++
Sbjct: 93 VIKGWDI 99
>sp|Q9UIF8|BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens
GN=BAZ2B PE=1 SV=3
Length = 2168
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 42 ALHKELDEISCPICMDHPHNAVLLICSSHDKGCRSY 77
A K + ++ C IC + +LL+C DKGC +Y
Sbjct: 1924 AWEKSIMKVYCQICRKGDNEELLLLCDGCDKGCHTY 1959
>sp|B7ZS37|BAZ2A_XENLA Bromodomain adjacent to zinc finger domain protein 2A OS=Xenopus
laevis GN=baz2a PE=2 SV=1
Length = 1698
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 42 ALHKELDEISCPICMDHPHNAVLLICSSHDKGCRSY 77
A + L++++C C ++ +LL+C S D+GC +Y
Sbjct: 1469 AWERSLNKVTCLYCRKGDNDELLLLCDSCDRGCHTY 1504
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,050,477
Number of Sequences: 539616
Number of extensions: 6812345
Number of successful extensions: 21016
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 20968
Number of HSP's gapped (non-prelim): 60
length of query: 381
length of database: 191,569,459
effective HSP length: 119
effective length of query: 262
effective length of database: 127,355,155
effective search space: 33367050610
effective search space used: 33367050610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)