Query 016837
Match_columns 381
No_of_seqs 94 out of 96
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 03:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07800 DUF1644: Protein of u 100.0 1.3E-91 2.9E-96 623.5 11.7 162 48-251 1-162 (162)
2 PLN03208 E3 ubiquitin-protein 95.2 0.016 3.5E-07 54.5 3.3 44 39-95 8-51 (193)
3 PHA02929 N1R/p28-like protein; 92.2 0.11 2.4E-06 50.0 2.9 14 47-60 172-185 (238)
4 KOG4172 Predicted E3 ubiquitin 91.2 0.084 1.8E-06 41.8 0.8 23 45-68 4-26 (62)
5 PF13909 zf-H2C2_5: C2H2-type 91.0 0.14 2.9E-06 32.1 1.5 21 202-222 4-24 (24)
6 PF13920 zf-C3HC4_3: Zinc fing 85.0 0.28 6E-06 35.5 0.0 21 48-68 1-21 (50)
7 PHA02926 zinc finger-like prot 82.8 1.2 2.5E-05 43.6 3.2 16 45-60 166-181 (242)
8 KOG3002 Zn finger protein [Gen 82.0 1.3 2.7E-05 44.1 3.2 29 195-223 135-165 (299)
9 TIGR00599 rad18 DNA repair pro 80.1 0.95 2.1E-05 46.7 1.7 20 48-67 25-44 (397)
10 PF03145 Sina: Seven in absent 73.7 0.84 1.8E-05 41.4 -0.7 29 195-223 43-73 (198)
11 PF13923 zf-C3HC4_2: Zinc fing 73.2 0.99 2.2E-05 31.2 -0.2 31 52-95 1-32 (39)
12 PF12678 zf-rbx1: RING-H2 zinc 70.6 2.6 5.6E-05 33.3 1.5 44 49-94 19-64 (73)
13 PF15227 zf-C3HC4_4: zinc fing 67.4 1.6 3.4E-05 31.4 -0.3 17 52-68 1-17 (42)
14 KOG2164 Predicted E3 ubiquitin 67.3 2.3 4.9E-05 45.5 0.7 35 49-96 186-220 (513)
15 KOG0825 PHD Zn-finger protein 66.5 2.5 5.5E-05 47.7 1.0 39 44-91 210-248 (1134)
16 smart00184 RING Ring finger. E 63.1 3 6.5E-05 26.3 0.5 30 52-94 1-30 (39)
17 COG2835 Uncharacterized conser 50.8 6.2 0.00013 31.5 0.5 9 170-178 9-17 (60)
18 KOG4692 Predicted E3 ubiquitin 50.3 7 0.00015 40.9 0.9 23 46-68 419-441 (489)
19 KOG2177 Predicted E3 ubiquitin 46.2 5.8 0.00012 34.2 -0.4 21 48-68 12-32 (386)
20 PF06679 DUF1180: Protein of u 45.9 13 0.00028 34.5 1.8 10 290-299 108-117 (163)
21 COG5574 PEX10 RING-finger-cont 44.3 9.1 0.0002 38.2 0.6 21 48-68 214-234 (271)
22 PRK11827 hypothetical protein; 43.6 9.9 0.00021 30.1 0.6 11 170-180 9-19 (60)
23 smart00504 Ubox Modified RING 41.0 12 0.00026 27.3 0.7 19 49-67 1-19 (63)
24 PF11793 FANCL_C: FANCL C-term 40.7 28 0.00061 27.4 2.7 44 49-98 2-46 (70)
25 KOG1785 Tyrosine kinase negati 40.1 10 0.00022 40.4 0.2 17 169-185 405-421 (563)
26 PF00097 zf-C3HC4: Zinc finger 39.8 9.6 0.00021 26.0 0.0 16 52-67 1-17 (41)
27 KOG0823 Predicted E3 ubiquitin 38.7 9.9 0.00022 37.1 -0.1 23 46-68 44-66 (230)
28 cd00162 RING RING-finger (Real 35.6 12 0.00027 24.3 0.0 32 51-94 1-32 (45)
29 KOG1006 Mitogen-activated prot 34.8 15 0.00033 37.6 0.5 29 184-216 299-327 (361)
30 PF13894 zf-C2H2_4: C2H2-type 34.4 30 0.00065 20.2 1.6 18 204-221 6-24 (24)
31 KOG1001 Helicase-like transcri 33.1 25 0.00054 38.8 1.8 36 45-97 450-485 (674)
32 KOG4275 Predicted E3 ubiquitin 31.3 12 0.00026 38.2 -0.8 20 49-68 300-319 (350)
33 smart00744 RINGv The RING-vari 28.2 41 0.00088 25.0 1.7 38 51-98 1-42 (49)
34 PF10614 CsgF: Type VIII secre 26.1 2.5E+02 0.0054 25.8 6.6 64 209-272 39-115 (142)
35 PF13445 zf-RING_UBOX: RING-ty 25.3 21 0.00045 26.2 -0.3 16 52-67 1-19 (43)
36 COG2879 Uncharacterized small 24.9 93 0.002 25.4 3.3 31 209-249 24-54 (65)
37 KOG4029 Transcription factor H 23.7 48 0.001 31.1 1.7 47 186-235 107-154 (228)
38 KOG0804 Cytoplasmic Zn-finger 22.9 33 0.00072 36.8 0.5 37 48-93 174-210 (493)
39 cd00022 BIR Baculoviral inhibi 22.0 36 0.00077 25.7 0.4 21 168-188 33-53 (69)
40 KOG0754 Mitochondrial oxodicar 21.6 60 0.0013 32.8 2.0 33 47-100 69-101 (294)
No 1
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=100.00 E-value=1.3e-91 Score=623.46 Aligned_cols=162 Identities=56% Similarity=1.132 Sum_probs=144.9
Q ss_pred ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCccchh
Q 016837 48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRTSSRNNTTLSHSSPSHPQHNKGPGENNIQQA 127 (381)
Q Consensus 48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa~~~~~~~~~~~~ss~~~~~~~~~~~~~~i~~~ 127 (381)
|||+||||||||||||||+||||+|||||||||||||||||||||||||++++++.++++++.+... +..
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~---------~~~- 70 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDS---------SSS- 70 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCC---------ccc-
Confidence 7999999999999999999999999999999999999999999999999999988766654322111 000
Q ss_pred hhhhhhhcCCCCCCCCCCCccccccccccccccCCCccccccccCccccccccceEEcchHHHhhcccCCCCcccCCccc
Q 016837 128 DRLLEREGEGNLNPEAGNSQTFHERTELEGLDVDNSSESILSLKCPMCRGAILGWEVVEEARKYLNLKRRTCSRESCSFV 207 (381)
Q Consensus 128 ~~~~~~~~e~~~~~~~~~s~~l~~~~~~~~~~~~~s~~~~~~L~CPLCRG~VkGWtVVe~AR~yLN~KkRSCs~E~CsF~ 207 (381)
.......+++|+||||||+|||||||++||+|||+|+||||+|+|+|+
T Consensus 71 --------------------------------~~~~~~~~~~L~CPLCRG~V~GWtvve~AR~~LN~K~RsC~~e~C~F~ 118 (162)
T PF07800_consen 71 --------------------------------ESSESQEQPELACPLCRGEVKGWTVVEPARRFLNAKKRSCSQESCSFS 118 (162)
T ss_pred --------------------------------ccccccccccccCccccCceeceEEchHHHHHhccCCccCcccccccc
Confidence 011223568899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhhhCCCCCCCCCCchHHHHHHHHhhhhhhhHHHH
Q 016837 208 GNYQELRRHARRVHPTTRPSDIDPSRERAWRRLEHQREYSDIVS 251 (381)
Q Consensus 208 GtY~ELRKHaR~~HP~aRPseVDP~Rqr~W~rLE~erE~~DvlS 251 (381)
|||.|||||||.+||++||++|||+||++|++||+||||+||||
T Consensus 119 GtY~eLrKHar~~HP~~rP~~vDP~rq~~W~~le~~re~~D~iS 162 (162)
T PF07800_consen 119 GTYSELRKHARSEHPSARPSEVDPQRQRDWERLEREREYGDVIS 162 (162)
T ss_pred cCHHHHHHHHHhhCCCCCCccCCHHHHHHHHHHHHhhhhhcccC
Confidence 99999999999999999999999999999999999999999997
No 2
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=95.23 E-value=0.016 Score=54.45 Aligned_cols=44 Identities=23% Similarity=0.531 Sum_probs=30.4
Q ss_pred hhHHhhcccccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHHh
Q 016837 39 DIHALHKELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKL 95 (381)
Q Consensus 39 ~~~al~keWedatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa 95 (381)
|.+.+...=++..||||+|...++|++.|- | .- ...||.++-++
T Consensus 8 ~~~~~~~~~~~~~CpICld~~~dPVvT~CG-H-~F-----------C~~CI~~wl~~ 51 (193)
T PLN03208 8 DDTTLVDSGGDFDCNICLDQVRDPVVTLCG-H-LF-----------CWPCIHKWTYA 51 (193)
T ss_pred ccceeccCCCccCCccCCCcCCCcEEcCCC-c-hh-----------HHHHHHHHHHh
Confidence 333445555789999999999999988773 2 22 34688877553
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=92.20 E-value=0.11 Score=49.99 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=10.8
Q ss_pred cccccCccccCCCc
Q 016837 47 LDEISCPICMDHPH 60 (381)
Q Consensus 47 WedatCPICME~PH 60 (381)
=++..||||||.-.
T Consensus 172 ~~~~eC~ICle~~~ 185 (238)
T PHA02929 172 SKDKECAICMEKVY 185 (238)
T ss_pred CCCCCCccCCcccc
Confidence 35689999999744
No 4
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.084 Score=41.84 Aligned_cols=23 Identities=35% Similarity=0.869 Sum_probs=19.8
Q ss_pred cccccccCccccCCCcchhhhhcc
Q 016837 45 KELDEISCPICMDHPHNAVLLICS 68 (381)
Q Consensus 45 keWedatCPICME~PHNAVLLlCS 68 (381)
.+|. .-|-||||+|-|.||..|-
T Consensus 4 ~~~~-dECTICye~pvdsVlYtCG 26 (62)
T KOG4172|consen 4 GQWS-DECTICYEHPVDSVLYTCG 26 (62)
T ss_pred cccc-cceeeeccCcchHHHHHcc
Confidence 4677 7899999999999997774
No 5
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=91.04 E-value=0.14 Score=32.07 Aligned_cols=21 Identities=38% Similarity=0.811 Sum_probs=18.4
Q ss_pred cCCcccccHHHHHHHHhhhCC
Q 016837 202 ESCSFVGNYQELRRHARRVHP 222 (381)
Q Consensus 202 E~CsF~GtY~ELRKHaR~~HP 222 (381)
.-|+|+.+..+|++|.+..||
T Consensus 4 ~~C~y~t~~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 4 PHCSYSTSKSNLKRHLKRHHP 24 (24)
T ss_dssp SSSS-EESHHHHHHHHHHHHS
T ss_pred CCCCCcCCHHHHHHHHHhhCc
Confidence 459999999999999999997
No 6
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=85.05 E-value=0.28 Score=35.48 Aligned_cols=21 Identities=43% Similarity=1.176 Sum_probs=16.9
Q ss_pred ccccCccccCCCcchhhhhcc
Q 016837 48 DEISCPICMDHPHNAVLLICS 68 (381)
Q Consensus 48 edatCPICME~PHNAVLLlCS 68 (381)
|+..|+||++.|.++|++-|-
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCg 21 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCG 21 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTC
T ss_pred CcCCCccCCccCCceEEeCCC
Confidence 567899999999999998863
No 7
>PHA02926 zinc finger-like protein; Provisional
Probab=82.83 E-value=1.2 Score=43.64 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=12.3
Q ss_pred cccccccCccccCCCc
Q 016837 45 KELDEISCPICMDHPH 60 (381)
Q Consensus 45 keWedatCPICME~PH 60 (381)
+.-++..|+||||.-+
T Consensus 166 ~~SkE~eCgICmE~I~ 181 (242)
T PHA02926 166 RVSKEKECGICYEVVY 181 (242)
T ss_pred hccCCCCCccCccccc
Confidence 3446799999999744
No 8
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=82.00 E-value=1.3 Score=44.15 Aligned_cols=29 Identities=24% Similarity=0.692 Sum_probs=26.1
Q ss_pred cCCCCccc--CCcccccHHHHHHHHhhhCCC
Q 016837 195 KRRTCSRE--SCSFVGNYQELRRHARRVHPT 223 (381)
Q Consensus 195 KkRSCs~E--~CsF~GtY~ELRKHaR~~HP~ 223 (381)
.+-+|.+- .|+|.|.|++|..|.+..|+.
T Consensus 135 ~~~~CP~p~~~C~~~G~~~~l~~H~~~~hk~ 165 (299)
T KOG3002|consen 135 RPCSCPVPGAECKYTGSYKDLYAHLNDTHKS 165 (299)
T ss_pred CCcCCCCCcccCCccCcHHHHHHHHHhhChh
Confidence 45678888 999999999999999999987
No 9
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.10 E-value=0.95 Score=46.70 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=17.0
Q ss_pred ccccCccccCCCcchhhhhc
Q 016837 48 DEISCPICMDHPHNAVLLIC 67 (381)
Q Consensus 48 edatCPICME~PHNAVLLlC 67 (381)
+..+||||++...+.|++-|
T Consensus 25 ~~l~C~IC~d~~~~PvitpC 44 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSC 44 (397)
T ss_pred cccCCCcCchhhhCccCCCC
Confidence 56899999999999987754
No 10
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.
Probab=73.75 E-value=0.84 Score=41.35 Aligned_cols=29 Identities=31% Similarity=0.653 Sum_probs=21.1
Q ss_pred cCCCCcc--cCCcccccHHHHHHHHhhhCCC
Q 016837 195 KRRTCSR--ESCSFVGNYQELRRHARRVHPT 223 (381)
Q Consensus 195 KkRSCs~--E~CsF~GtY~ELRKHaR~~HP~ 223 (381)
++-.|.. .+|+|.|++++|.+|.+..|+.
T Consensus 43 ~p~~CP~~~~~C~~~G~~~~l~~Hl~~~H~~ 73 (198)
T PF03145_consen 43 RPCSCPFPGSGCDWQGSYKELLDHLRDKHSW 73 (198)
T ss_dssp SEEE-SSSSTT---EEECCCHHHHHHHHTTT
T ss_pred cCCcCCCCCCCccccCCHHHHHHHHHHHCCC
Confidence 4456777 8899999999999999999953
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=73.21 E-value=0.99 Score=31.16 Aligned_cols=31 Identities=35% Similarity=1.010 Sum_probs=20.0
Q ss_pred CccccCCCcchh-hhhccccCCCCcccccCCCCccchhHHHHHHh
Q 016837 52 CPICMDHPHNAV-LLICSSHDKGCRSYICDTSYRHSNCLDRYKKL 95 (381)
Q Consensus 52 CPICME~PHNAV-LLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa 95 (381)
||||++.+-|+| ++.| .| +| ...|+.++.+.
T Consensus 1 C~iC~~~~~~~~~~~~C-GH-----------~f-C~~C~~~~~~~ 32 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPC-GH-----------SF-CKECIEKYLEK 32 (39)
T ss_dssp ETTTTSB-SSEEEECTT-SE-----------EE-EHHHHHHHHHC
T ss_pred CCCCCCcccCcCEECCC-CC-----------ch-hHHHHHHHHHC
Confidence 899999999995 4443 22 22 34677777664
No 12
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=70.64 E-value=2.6 Score=33.30 Aligned_cols=44 Identities=20% Similarity=0.616 Sum_probs=27.8
Q ss_pred cccCccccCCCcchhhhhccccCCCCcccc--cCCCCccchhHHHHHH
Q 016837 49 EISCPICMDHPHNAVLLICSSHDKGCRSYI--CDTSYRHSNCLDRYKK 94 (381)
Q Consensus 49 datCPICME~PHNAVLLlCSSh~KGCRPYM--CdTSyRHSNCLDQFkK 94 (381)
+-.|.||++.-+... .-|......|-..+ |+-.| |.-||.|+-+
T Consensus 19 ~d~C~IC~~~l~~~~-~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~ 64 (73)
T PF12678_consen 19 DDNCAICREPLEDPC-PECQAPQDECPIVWGPCGHIF-HFHCISQWLK 64 (73)
T ss_dssp CSBETTTTSBTTSTT-CCHHHCTTTS-EEEETTSEEE-EHHHHHHHHT
T ss_pred CCcccccChhhhChh-hhhcCCccccceEecccCCCE-EHHHHHHHHh
Confidence 445999999886654 25555555565543 66554 6788877753
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=67.37 E-value=1.6 Score=31.36 Aligned_cols=17 Identities=47% Similarity=1.060 Sum_probs=13.8
Q ss_pred CccccCCCcchhhhhcc
Q 016837 52 CPICMDHPHNAVLLICS 68 (381)
Q Consensus 52 CPICME~PHNAVLLlCS 68 (381)
||||++.-++.|.|.|.
T Consensus 1 CpiC~~~~~~Pv~l~CG 17 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCG 17 (42)
T ss_dssp ETTTTSB-SSEEE-SSS
T ss_pred CCccchhhCCccccCCc
Confidence 89999999999999884
No 14
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.27 E-value=2.3 Score=45.50 Aligned_cols=35 Identities=31% Similarity=0.894 Sum_probs=26.2
Q ss_pred cccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHHhh
Q 016837 49 EISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLR 96 (381)
Q Consensus 49 datCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa~ 96 (381)
+..||||++.|==||+-.|- |- | | -+||=||-...
T Consensus 186 ~~~CPICL~~~~~p~~t~CG-Hi-----F-C------~~CiLqy~~~s 220 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCG-HI-----F-C------GPCILQYWNYS 220 (513)
T ss_pred CCcCCcccCCCCcccccccC-ce-----e-e------HHHHHHHHhhh
Confidence 99999999999999987763 21 1 1 26888997643
No 15
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=66.54 E-value=2.5 Score=47.66 Aligned_cols=39 Identities=41% Similarity=0.874 Sum_probs=31.9
Q ss_pred hcccccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHH
Q 016837 44 HKELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDR 91 (381)
Q Consensus 44 ~keWedatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQ 91 (381)
.-+=|.+.|.||--+=|--|||||=+ ||--|-|+-|||=
T Consensus 210 ~~~~E~~~C~IC~~~DpEdVLLLCDs---------CN~~~YH~YCLDP 248 (1134)
T KOG0825|consen 210 GLSQEEVKCDICTVHDPEDVLLLCDS---------CNKVYYHVYCLDP 248 (1134)
T ss_pred CcccccccceeeccCChHHhheeecc---------cccceeeccccCc
Confidence 33457889999999999999999987 6666778888873
No 16
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=63.06 E-value=3 Score=26.28 Aligned_cols=30 Identities=30% Similarity=0.970 Sum_probs=21.7
Q ss_pred CccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837 52 CPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK 94 (381)
Q Consensus 52 CPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK 94 (381)
|+||++...+.++|.|. -.| |.+|++++-+
T Consensus 1 C~iC~~~~~~~~~~~C~------------H~~-c~~C~~~~~~ 30 (39)
T smart00184 1 CPICLEELKDPVVLPCG------------HTF-CRSCIRKWLK 30 (39)
T ss_pred CCcCccCCCCcEEecCC------------ChH-HHHHHHHHHH
Confidence 89999998888877642 222 5678887765
No 17
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=50.83 E-value=6.2 Score=31.50 Aligned_cols=9 Identities=56% Similarity=1.678 Sum_probs=8.7
Q ss_pred ccCcccccc
Q 016837 170 LKCPMCRGA 178 (381)
Q Consensus 170 L~CPLCRG~ 178 (381)
|+||+|+|.
T Consensus 9 LaCP~~kg~ 17 (60)
T COG2835 9 LACPVCKGP 17 (60)
T ss_pred eeccCcCCc
Confidence 999999998
No 18
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.32 E-value=7 Score=40.92 Aligned_cols=23 Identities=43% Similarity=0.879 Sum_probs=21.3
Q ss_pred ccccccCccccCCCcchhhhhcc
Q 016837 46 ELDEISCPICMDHPHNAVLLICS 68 (381)
Q Consensus 46 eWedatCPICME~PHNAVLLlCS 68 (381)
+-||-.||||--+|-|||.--|+
T Consensus 419 ~sEd~lCpICyA~pi~Avf~PC~ 441 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINAVFAPCS 441 (489)
T ss_pred CcccccCcceecccchhhccCCC
Confidence 36899999999999999999997
No 19
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.19 E-value=5.8 Score=34.21 Aligned_cols=21 Identities=43% Similarity=1.065 Sum_probs=17.0
Q ss_pred ccccCccccCCCcchhhhhcc
Q 016837 48 DEISCPICMDHPHNAVLLICS 68 (381)
Q Consensus 48 edatCPICME~PHNAVLLlCS 68 (381)
+.++||||++.=-..++|-|-
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~ 32 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCG 32 (386)
T ss_pred ccccChhhHHHhhcCcccccc
Confidence 789999999987777777664
No 20
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=45.90 E-value=13 Score=34.48 Aligned_cols=10 Identities=10% Similarity=0.348 Sum_probs=6.0
Q ss_pred chhhhhHhhh
Q 016837 290 WTTFFLFHMI 299 (381)
Q Consensus 290 ~T~ffL~~~~ 299 (381)
..+||+|++|
T Consensus 108 ~i~yfvir~~ 117 (163)
T PF06679_consen 108 AILYFVIRTF 117 (163)
T ss_pred HHHHHHHHHH
Confidence 4456666665
No 21
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.33 E-value=9.1 Score=38.21 Aligned_cols=21 Identities=19% Similarity=0.656 Sum_probs=17.9
Q ss_pred ccccCccccCCCcchhhhhcc
Q 016837 48 DEISCPICMDHPHNAVLLICS 68 (381)
Q Consensus 48 edatCPICME~PHNAVLLlCS 68 (381)
-|-.|+||||.||+++-+.|.
T Consensus 214 ~d~kC~lC~e~~~~ps~t~Cg 234 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCG 234 (271)
T ss_pred cccceeeeecccCCccccccc
Confidence 466799999999999977775
No 22
>PRK11827 hypothetical protein; Provisional
Probab=43.64 E-value=9.9 Score=30.13 Aligned_cols=11 Identities=36% Similarity=1.307 Sum_probs=10.0
Q ss_pred ccCcccccccc
Q 016837 170 LKCPMCRGAIL 180 (381)
Q Consensus 170 L~CPLCRG~Vk 180 (381)
|+||+|.|++.
T Consensus 9 LaCP~ckg~L~ 19 (60)
T PRK11827 9 IACPVCNGKLW 19 (60)
T ss_pred eECCCCCCcCe
Confidence 99999999875
No 23
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=41.00 E-value=12 Score=27.32 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=15.4
Q ss_pred cccCccccCCCcchhhhhc
Q 016837 49 EISCPICMDHPHNAVLLIC 67 (381)
Q Consensus 49 datCPICME~PHNAVLLlC 67 (381)
+..||||++.--|.|++-|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~ 19 (63)
T smart00504 1 EFLCPISLEVMKDPVILPS 19 (63)
T ss_pred CcCCcCCCCcCCCCEECCC
Confidence 3579999999999887754
No 24
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=40.71 E-value=28 Score=27.44 Aligned_cols=44 Identities=23% Similarity=0.456 Sum_probs=17.4
Q ss_pred cccCccccCCCc-chhhhhccccCCCCcccccCCCCccchhHHHHHHhhcC
Q 016837 49 EISCPICMDHPH-NAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRTS 98 (381)
Q Consensus 49 datCPICME~PH-NAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa~~~ 98 (381)
+..|+||+++=+ +.= .-++.|..=.|.-.| |..||-++=.+..+
T Consensus 2 ~~~C~IC~~~~~~~~~-----~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~ 46 (70)
T PF11793_consen 2 ELECGICYSYRLDDGE-----IPDVVCPNPSCGKKF-HLLCLSEWFLSLEK 46 (70)
T ss_dssp --S-SSS--SS-TT----------B--S-TT----B--SGGGHHHHHHHHS
T ss_pred CCCCCcCCcEecCCCC-----cCceEcCCcccCCHH-HHHHHHHHHHHccc
Confidence 567999998755 211 124566666666544 88999877655443
No 25
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=40.14 E-value=10 Score=40.35 Aligned_cols=17 Identities=47% Similarity=0.863 Sum_probs=14.3
Q ss_pred cccCccccccccceEEc
Q 016837 169 SLKCPMCRGAILGWEVV 185 (381)
Q Consensus 169 ~L~CPLCRG~VkGWtVV 185 (381)
.-.||.||-+||||.-|
T Consensus 405 gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 405 GQTCPFCRCEIKGTEPV 421 (563)
T ss_pred CCCCCceeeEeccccce
Confidence 36899999999999843
No 26
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=39.81 E-value=9.6 Score=25.96 Aligned_cols=16 Identities=50% Similarity=1.215 Sum_probs=13.5
Q ss_pred CccccCCCcchh-hhhc
Q 016837 52 CPICMDHPHNAV-LLIC 67 (381)
Q Consensus 52 CPICME~PHNAV-LLlC 67 (381)
||||++.+-+.+ ++.|
T Consensus 1 C~iC~~~~~~~~~~~~C 17 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPC 17 (41)
T ss_dssp ETTTSSBCSSEEEETTT
T ss_pred CCcCCccccCCCEEecC
Confidence 899999999988 6655
No 27
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.66 E-value=9.9 Score=37.14 Aligned_cols=23 Identities=26% Similarity=0.720 Sum_probs=19.2
Q ss_pred ccccccCccccCCCcchhhhhcc
Q 016837 46 ELDEISCPICMDHPHNAVLLICS 68 (381)
Q Consensus 46 eWedatCPICME~PHNAVLLlCS 68 (381)
+=-.-.|.||+|-++.+||-+|=
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCG 66 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCG 66 (230)
T ss_pred CCCceeeeeeccccCCCEEeecc
Confidence 34456799999999999998884
No 28
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=35.63 E-value=12 Score=24.35 Aligned_cols=32 Identities=31% Similarity=0.935 Sum_probs=20.6
Q ss_pred cCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837 51 SCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK 94 (381)
Q Consensus 51 tCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK 94 (381)
.|+||++...+.+.+. -|+-.| |..|++++.+
T Consensus 1 ~C~iC~~~~~~~~~~~-----------~C~H~~-c~~C~~~~~~ 32 (45)
T cd00162 1 ECPICLEEFREPVVLL-----------PCGHVF-CRSCIDKWLK 32 (45)
T ss_pred CCCcCchhhhCceEec-----------CCCChh-cHHHHHHHHH
Confidence 5999999885544332 144343 6778887755
No 29
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=34.80 E-value=15 Score=37.62 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=17.1
Q ss_pred EcchHHHhhcccCCCCcccCCcccccHHHHHHH
Q 016837 184 VVEEARKYLNLKRRTCSRESCSFVGNYQELRRH 216 (381)
Q Consensus 184 VVe~AR~yLN~KkRSCs~E~CsF~GtY~ELRKH 216 (381)
+.-+-+.|.|. |-.-.=+-.-.|.+|.||
T Consensus 299 ~s~~~~~fint----Cl~Kd~~~Rpky~~Lk~~ 327 (361)
T KOG1006|consen 299 YSFSMVRFINT----CLIKDRSDRPKYDDLKKF 327 (361)
T ss_pred cCHHHHHHHHH----HhhcccccCcchhhhhcC
Confidence 34456667763 444444455678888775
No 30
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=34.40 E-value=30 Score=20.18 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=13.3
Q ss_pred Cccc-ccHHHHHHHHhhhC
Q 016837 204 CSFV-GNYQELRRHARRVH 221 (381)
Q Consensus 204 CsF~-GtY~ELRKHaR~~H 221 (381)
|.+. .++.+|++|.+..|
T Consensus 6 C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 6 CGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp TS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCcHHHHHHHHHhhC
Confidence 5443 57889999999877
No 31
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=33.15 E-value=25 Score=38.79 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=27.9
Q ss_pred cccccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHHhhc
Q 016837 45 KELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRT 97 (381)
Q Consensus 45 keWedatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa~~ 97 (381)
+=|.+..|+||+| +-.+|+-.|. |..|.+.++++-.
T Consensus 450 ~l~~~~~c~ic~~-~~~~~it~c~----------------h~~c~~c~~~~i~ 485 (674)
T KOG1001|consen 450 DLSVSHWCHICCD-LDSFFITRCG----------------HDFCVECLKKSIQ 485 (674)
T ss_pred HHhhccccccccc-cccceeeccc----------------chHHHHHHHhccc
Confidence 3344489999999 8888877664 8999999998543
No 32
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.28 E-value=12 Score=38.24 Aligned_cols=20 Identities=45% Similarity=1.014 Sum_probs=18.0
Q ss_pred cccCccccCCCcchhhhhcc
Q 016837 49 EISCPICMDHPHNAVLLICS 68 (381)
Q Consensus 49 datCPICME~PHNAVLLlCS 68 (381)
+-.|-||||-|-..|+|-|-
T Consensus 300 ~~LC~ICmDaP~DCvfLeCG 319 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECG 319 (350)
T ss_pred HHHHHHHhcCCcceEEeecC
Confidence 56799999999999999983
No 33
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=28.16 E-value=41 Score=24.98 Aligned_cols=38 Identities=26% Similarity=0.667 Sum_probs=25.3
Q ss_pred cCccccC--CCcchhhhhccccCCCCcccccCC--CCccchhHHHHHHhhcC
Q 016837 51 SCPICMD--HPHNAVLLICSSHDKGCRSYICDT--SYRHSNCLDRYKKLRTS 98 (381)
Q Consensus 51 tCPICME--~PHNAVLLlCSSh~KGCRPYMCdT--SyRHSNCLDQFkKa~~~ 98 (381)
.|-||++ .+-+..+ +|=.|-. .|-|..||+++-....+
T Consensus 1 ~CrIC~~~~~~~~~l~----------~PC~C~G~~~~vH~~Cl~~W~~~~~~ 42 (49)
T smart00744 1 ICRICHDEGDEGDPLV----------SPCRCKGSLKYVHQECLERWINESGN 42 (49)
T ss_pred CccCCCCCCCCCCeeE----------eccccCCchhHHHHHHHHHHHHHcCC
Confidence 4889997 4444332 3444664 58899999999876543
No 34
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=26.08 E-value=2.5e+02 Score=25.76 Aligned_cols=64 Identities=23% Similarity=0.244 Sum_probs=43.3
Q ss_pred cHHHHHHHHhhhCCCCCCCCCC------chHHHHHHHHhhhhhhhHHHHHHHhc-------CCCceeecceeeeCCC
Q 016837 209 NYQELRRHARRVHPTTRPSDID------PSRERAWRRLEHQREYSDIVSAIRSS-------MPGAVVVGDYVIENGD 272 (381)
Q Consensus 209 tY~ELRKHaR~~HP~aRPseVD------P~Rqr~W~rLE~erE~~DvlStI~S~-------~PgavV~GDYVIE~gd 272 (381)
||.-|--.|..--....|..-| ++-......--+.|=+.-|.+-|-.. -||-+.+|||.||.-+
T Consensus 39 Ngs~LL~~A~AQN~~~dp~~~~~~~~~~~S~l~~F~~sLqsqlls~l~~~i~~~~fGe~~~~~Gt~~~gdf~I~i~~ 115 (142)
T PF10614_consen 39 NGSWLLSSAQAQNDFKDPSAEDDFSTSSLSALDRFTQSLQSQLLSQLSRDITQGIFGEDPQKPGTFTTGDFTIEIVN 115 (142)
T ss_pred cHHHHhhhhhhcCCcCCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCceEEECCEEEEEEe
Confidence 4777888888877778887763 22333333322334566666666666 7999999999999644
No 35
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=25.29 E-value=21 Score=26.18 Aligned_cols=16 Identities=44% Similarity=1.167 Sum_probs=6.6
Q ss_pred CccccCC--Ccc-hhhhhc
Q 016837 52 CPICMDH--PHN-AVLLIC 67 (381)
Q Consensus 52 CPICME~--PHN-AVLLlC 67 (381)
||||.|+ +.| .|+|.|
T Consensus 1 CpIc~e~~~~~n~P~~L~C 19 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPC 19 (43)
T ss_dssp -TTT----TTSS-EEE-SS
T ss_pred CCccccccCCCCCCEEEeC
Confidence 8999994 222 466665
No 36
>COG2879 Uncharacterized small protein [Function unknown]
Probab=24.93 E-value=93 Score=25.42 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=25.7
Q ss_pred cHHHHHHHHhhhCCCCCCCCCCchHHHHHHHHhhhhhhhHH
Q 016837 209 NYQELRRHARRVHPTTRPSDIDPSRERAWRRLEHQREYSDI 249 (381)
Q Consensus 209 tY~ELRKHaR~~HP~aRPseVDP~Rqr~W~rLE~erE~~Dv 249 (381)
.|.---.|+|.+||..-|.- ..|..||.+|.
T Consensus 24 dYdnYVehmr~~hPd~p~mT----------~~EFfrec~da 54 (65)
T COG2879 24 DYDNYVEHMRKKHPDKPPMT----------YEEFFRECQDA 54 (65)
T ss_pred cHHHHHHHHHHhCcCCCccc----------HHHHHHHHHHh
Confidence 67888899999999998875 67788888774
No 37
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=23.74 E-value=48 Score=31.11 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=39.5
Q ss_pred chHHHhhcccCCCCcccCCcccccHHHHHHHHhhhCC-CCCCCCCCchHHH
Q 016837 186 EEARKYLNLKRRTCSRESCSFVGNYQELRRHARRVHP-TTRPSDIDPSRER 235 (381)
Q Consensus 186 e~AR~yLN~KkRSCs~E~CsF~GtY~ELRKHaR~~HP-~aRPseVDP~Rqr 235 (381)
...|...|++ +-+--..+..-|.+||+|+=.+++ ..|-++||..|..
T Consensus 107 ~~~~~~~n~R---ER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A 154 (228)
T KOG4029|consen 107 SAQRQARNAR---ERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLA 154 (228)
T ss_pred hhhhhhhhhh---hhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHH
Confidence 4556777877 445556999999999999999999 9999999999865
No 38
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.92 E-value=33 Score=36.79 Aligned_cols=37 Identities=24% Similarity=0.741 Sum_probs=29.0
Q ss_pred ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHH
Q 016837 48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYK 93 (381)
Q Consensus 48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFk 93 (381)
|--|||||+|.=-- --.|=+|-+|+-||+|+ ||-++.
T Consensus 174 ELPTCpVCLERMD~--------s~~gi~t~~c~Hsfh~~-cl~~w~ 210 (493)
T KOG0804|consen 174 ELPTCPVCLERMDS--------STTGILTILCNHSFHCS-CLMKWW 210 (493)
T ss_pred cCCCcchhHhhcCc--------cccceeeeecccccchH-HHhhcc
Confidence 55799999998654 34788999999999765 876653
No 39
>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.
Probab=22.02 E-value=36 Score=25.72 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=17.9
Q ss_pred ccccCccccccccceEEcchH
Q 016837 168 LSLKCPMCRGAILGWEVVEEA 188 (381)
Q Consensus 168 ~~L~CPLCRG~VkGWtVVe~A 188 (381)
..+.|.-|.+.+.+|...+..
T Consensus 33 d~v~C~~C~~~~~~w~~~d~p 53 (69)
T cd00022 33 DEVKCFFCGLELKNWEPGDDP 53 (69)
T ss_pred CEEEeCCCCCCccCCCCCCCH
Confidence 459999999999999988654
No 40
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion]
Probab=21.63 E-value=60 Score=32.83 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=28.5
Q ss_pred cccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHHhhcCCC
Q 016837 47 LDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRTSSR 100 (381)
Q Consensus 47 WedatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa~~~~~ 100 (381)
|+.+.=|||||-|-.|+=.+ |.|||||.+.-..
T Consensus 69 ykGI~pPIl~EtPKRa~KF~---------------------~~eq~K~~F~~~~ 101 (294)
T KOG0754|consen 69 YKGILPPILMETPKRATKFL---------------------TNEQYKKLFQFGN 101 (294)
T ss_pred hccCCCHHhhhcchhhhhhc---------------------cHHHHHHHhcCCC
Confidence 99999999999999998443 5799999998743
Done!