Query         016837
Match_columns 381
No_of_seqs    94 out of 96
Neff          3.1 
Searched_HMMs 29240
Date          Mon Mar 25 04:36:39 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016837hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3hct_A TNF receptor-associated  98.4 7.5E-08 2.6E-12   78.2   2.5   60  171-230    55-116 (118)
  2 1rmd_A RAG1; V(D)J recombinati  98.1 1.1E-06 3.7E-11   70.7   2.7   50  170-219    59-111 (116)
  3 3knv_A TNF receptor-associated  97.3 0.00011 3.6E-09   62.5   2.5   50  170-219    67-128 (141)
  4 3hcs_A TNF receptor-associated  97.2 0.00017 5.7E-09   61.4   2.9   20   48-67     17-36  (170)
  5 4ayc_A E3 ubiquitin-protein li  96.3  0.0014 4.8E-08   54.4   2.0   32   48-92     52-83  (138)
  6 1v87_A Deltex protein 2; ring-  96.2  0.0027 9.3E-08   50.3   3.4   48   46-94     22-75  (114)
  7 2ecm_A Ring finger and CHY zin  96.1  0.0037 1.3E-07   43.2   2.9   35   47-94      3-41  (55)
  8 3fl2_A E3 ubiquitin-protein li  96.1  0.0022 7.6E-08   52.0   2.0   34   48-94     51-84  (124)
  9 2yur_A Retinoblastoma-binding   95.9  0.0044 1.5E-07   46.2   2.9   37   47-95     13-49  (74)
 10 2djb_A Polycomb group ring fin  95.8  0.0037 1.3E-07   46.2   2.2   36   47-94     13-48  (72)
 11 3lrq_A E3 ubiquitin-protein li  95.7  0.0036 1.2E-07   49.4   1.9   38   44-94     17-55  (100)
 12 2y43_A E3 ubiquitin-protein li  95.4  0.0054 1.8E-07   47.7   1.9   35   48-94     21-55  (99)
 13 1jm7_A BRCA1, breast cancer ty  95.3    0.01 3.5E-07   46.4   3.2   34   48-94     20-53  (112)
 14 2ecy_A TNF receptor-associated  95.3  0.0079 2.7E-07   43.5   2.2   35   47-94     13-47  (66)
 15 2ckl_B Ubiquitin ligase protei  95.1  0.0061 2.1E-07   51.6   1.4   35   48-94     53-87  (165)
 16 1chc_A Equine herpes virus-1 r  95.0   0.015 5.3E-07   41.8   3.2   34   48-94      4-38  (68)
 17 2ckl_A Polycomb group ring fin  94.6   0.046 1.6E-06   43.2   5.1   34   48-93     14-47  (108)
 18 2kiz_A E3 ubiquitin-protein li  94.6   0.016 5.5E-07   42.0   2.2   36   46-94     11-49  (69)
 19 1x4j_A Ring finger protein 38;  94.3   0.012   4E-07   43.6   1.0   36   46-94     20-58  (75)
 20 2ect_A Ring finger protein 126  94.2   0.024 8.2E-07   42.0   2.5   34   48-94     14-50  (78)
 21 1iym_A EL5; ring-H2 finger, ub  94.0   0.021 7.3E-07   39.5   1.8   33   48-92      4-39  (55)
 22 2d8s_A Cellular modulator of i  93.5   0.063 2.1E-06   41.9   3.8   40   46-95     12-55  (80)
 23 2l0b_A E3 ubiquitin-protein li  93.3   0.019 6.4E-07   44.6   0.5   34   47-93     38-74  (91)
 24 1e4u_A Transcriptional repress  92.9     0.1 3.4E-06   40.4   4.1   11   47-57      9-19  (78)
 25 2ep4_A Ring finger protein 24;  92.6   0.051 1.7E-06   39.8   2.0   37   48-94     14-50  (74)
 26 2y1n_A E3 ubiquitin-protein li  92.1   0.082 2.8E-06   52.6   3.4   32   50-94    333-364 (389)
 27 4ap4_A E3 ubiquitin ligase RNF  91.8   0.048 1.6E-06   43.1   1.1   36   47-95      5-47  (133)
 28 2ecg_A Baculoviral IAP repeat-  91.5   0.042 1.5E-06   41.1   0.5   21   47-67     23-43  (75)
 29 4ic3_A E3 ubiquitin-protein li  90.2   0.053 1.8E-06   40.7  -0.0   23   45-67     20-42  (74)
 30 2ecj_A Tripartite motif-contai  89.2   0.096 3.3E-06   36.2   0.6   35   46-93     12-46  (58)
 31 2ecl_A Ring-box protein 2; RNF  89.1    0.15   5E-06   38.9   1.7   14   48-61     14-27  (81)
 32 2ysj_A Tripartite motif-contai  88.4    0.12   4E-06   36.8   0.6   36   47-95     18-53  (63)
 33 3dpl_R Ring-box protein 1; ubi  87.6    0.35 1.2E-05   39.4   3.1   44   48-93     36-86  (106)
 34 1bor_A Transcription factor PM  87.3    0.19 6.6E-06   35.7   1.3   24   45-68      2-25  (56)
 35 2d8t_A Dactylidin, ring finger  87.2    0.16 5.3E-06   37.2   0.7   24   44-67     10-33  (71)
 36 2ea5_A Cell growth regulator w  86.8    0.19 6.4E-06   37.6   1.0   21   48-68     14-34  (68)
 37 4ap4_A E3 ubiquitin ligase RNF  86.4    0.18   6E-06   39.8   0.6   16   47-62     70-85  (133)
 38 1wgm_A Ubiquitin conjugation f  86.3    0.08 2.7E-06   42.4  -1.4   22   47-68     20-41  (98)
 39 2ysl_A Tripartite motif-contai  85.5     0.2 6.8E-06   36.3   0.5   35   47-94     18-52  (73)
 40 2yho_A E3 ubiquitin-protein li  85.3    0.16 5.4E-06   39.0  -0.1   21   48-68     17-37  (79)
 41 2ecw_A Tripartite motif-contai  84.3    0.28 9.7E-06   35.9   0.9   35   48-95     18-52  (85)
 42 2egp_A Tripartite motif-contai  84.1    0.17 5.8E-06   37.1  -0.4   20   48-67     11-30  (79)
 43 2ecv_A Tripartite motif-contai  83.4    0.33 1.1E-05   35.5   1.0   35   48-95     18-52  (85)
 44 2csy_A Zinc finger protein 183  82.8    0.31 1.1E-05   36.3   0.6   37   45-94     11-47  (81)
 45 2vje_A E3 ubiquitin-protein li  82.7    0.32 1.1E-05   35.7   0.6   18   48-65      7-24  (64)
 46 2ecn_A Ring finger protein 141  80.3    0.37 1.3E-05   34.8   0.2   21   46-67     12-32  (70)
 47 3l11_A E3 ubiquitin-protein li  78.9    0.34 1.2E-05   38.4  -0.4   20   48-67     14-33  (115)
 48 2kr4_A Ubiquitin conjugation f  78.9    0.23 7.8E-06   38.4  -1.4   21   47-67     12-32  (85)
 49 3ztg_A E3 ubiquitin-protein li  78.5    0.34 1.2E-05   36.7  -0.5   20   47-66     11-30  (92)
 50 2vje_B MDM4 protein; proto-onc  78.4    0.52 1.8E-05   34.4   0.5   17   49-65      7-23  (63)
 51 2ea6_A Ring finger protein 4;   77.1    0.45 1.5E-05   33.7  -0.2   35   47-94     13-54  (69)
 52 1vyx_A ORF K3, K3RING; zinc-bi  76.9     1.2 4.3E-05   32.8   2.2   38   48-95      5-44  (60)
 53 2xeu_A Ring finger protein 4;   76.9    0.43 1.5E-05   33.3  -0.3   34   48-94      2-42  (64)
 54 3ng2_A RNF4, snurf, ring finge  76.6    0.47 1.6E-05   34.0  -0.2   37   45-94      6-49  (71)
 55 2kre_A Ubiquitin conjugation f  76.5    0.29   1E-05   39.2  -1.4   20   48-67     28-47  (100)
 56 3t6p_A Baculoviral IAP repeat-  76.0    0.66 2.3E-05   45.0   0.6   21   47-67    293-313 (345)
 57 2ct2_A Tripartite motif protei  75.5    0.68 2.3E-05   34.4   0.4   36   47-95     13-52  (88)
 58 1t1h_A Gspef-atpub14, armadill  75.5    0.78 2.7E-05   33.7   0.8   20   48-67      7-26  (78)
 59 1jm7_B BARD1, BRCA1-associated  75.4    0.74 2.5E-05   36.8   0.6   21   47-67     20-41  (117)
 60 3mjh_B Early endosome antigen   71.9     2.3 7.8E-05   29.3   2.3   20  205-224    13-32  (34)
 61 1z6u_A NP95-like ring finger p  71.6    0.75 2.6E-05   39.0  -0.2   34   48-94     77-110 (150)
 62 2a25_A Ubiquitin ligase SIAH1;  71.5    0.96 3.3E-05   40.1   0.5   28  196-223    36-65  (193)
 63 2c2l_A CHIP, carboxy terminus   70.9     0.8 2.7E-05   40.3  -0.2   21   47-67    206-226 (281)
 64 1g25_A CDK-activating kinase a  70.8    0.62 2.1E-05   33.3  -0.8   34   48-94      2-40  (65)
 65 2ct0_A Non-SMC element 1 homol  68.0     1.9 6.5E-05   33.5   1.4   33   50-94     16-48  (74)
 66 3k1l_B Fancl; UBC, ring, RWD,   63.3     9.2 0.00031   38.4   5.6   49   46-99    305-353 (381)
 67 2jun_A Midline-1; B-BOX, TRIM,  62.2     2.5 8.7E-05   32.7   1.1   20   48-67      2-24  (101)
 68 2yu4_A E3 SUMO-protein ligase   55.3     2.9 9.9E-05   32.5   0.4   36   48-96      6-42  (94)
 69 2e6s_A E3 ubiquitin-protein li  46.6     5.1 0.00017   31.2   0.5   36   45-90     20-57  (77)
 70 2yho_A E3 ubiquitin-protein li  45.5     8.3 0.00029   29.3   1.6   16  170-185    50-65  (79)
 71 2f42_A STIP1 homology and U-bo  39.6     7.1 0.00024   34.8   0.4   36   48-96    105-140 (179)
 72 1zw8_A Zinc-responsive transcr  35.3      19 0.00066   26.3   2.1   27  195-221    37-64  (64)
 73 2jny_A Uncharacterized BCR; st  32.2      14 0.00047   28.5   0.9   10  170-179    11-20  (67)
 74 2enh_A Zinc finger protein 28   31.7      33  0.0011   21.6   2.6   33   50-82     13-46  (46)
 75 2ct1_A Transcriptional repress  30.8      30   0.001   24.2   2.5   54  170-228    16-76  (77)
 76 1wim_A KIAA0161 protein; ring   30.1      48  0.0016   25.1   3.7   65  169-245     5-89  (94)
 77 2c7n_A Rabex-5, GEF 1, RAB gua  29.6      60   0.002   25.9   4.1   45  187-243     7-64  (74)
 78 2pk7_A Uncharacterized protein  28.5      17 0.00058   28.0   0.8   11  170-180     9-19  (69)
 79 2jr6_A UPF0434 protein NMA0874  28.4      18 0.00061   27.8   0.9   11  170-180     9-19  (68)
 80 2hf1_A Tetraacyldisaccharide-1  28.4      17  0.0006   27.9   0.9   11  170-180     9-19  (68)
 81 2js4_A UPF0434 protein BB2007;  27.9      18 0.00061   28.0   0.9   11  170-180     9-19  (70)
 82 2ent_A Krueppel-like factor 15  27.6      29 0.00098   21.8   1.7   37  190-227     6-43  (48)
 83 1f62_A Transcription factor WS  27.1      13 0.00046   25.9   0.0   31   50-90      1-31  (51)
 84 2rpc_A Zinc finger protein ZIC  25.0      56  0.0019   25.6   3.3    8  168-175    24-31  (155)
 85 2kpi_A Uncharacterized protein  24.9      22 0.00076   26.3   0.9   10  170-179    11-20  (56)
 86 2yti_A Zinc finger protein 347  24.9      46  0.0016   20.8   2.3   32   50-81     13-45  (46)
 87 3htk_C E3 SUMO-protein ligase   24.7      15 0.00053   35.0  -0.0   29   36-65    169-197 (267)
 88 2d9h_A Zinc finger protein 692  22.7      52  0.0018   22.9   2.5   58  170-229     8-70  (78)
 89 2k5r_A Uncharacterized protein  22.2      25 0.00087   28.9   0.8   12  170-181     9-20  (97)
 90 1wjp_A Zinc finger protein 295  22.0      34  0.0012   25.3   1.5   56  170-228    43-100 (107)
 91 2ku3_A Bromodomain-containing   21.0      26 0.00091   26.7   0.6   36   45-90     12-49  (71)
 92 2eq3_A Zinc finger protein 347  20.9      41  0.0014   20.9   1.5   10   72-81     36-45  (46)

No 1  
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.42  E-value=7.5e-08  Score=78.19  Aligned_cols=60  Identities=17%  Similarity=0.179  Sum_probs=45.5

Q ss_pred             cCccccccccce--EEcchHHHhhcccCCCCcccCCcccccHHHHHHHHhhhCCCCCCCCCC
Q 016837          171 KCPMCRGAILGW--EVVEEARKYLNLKRRTCSRESCSFVGNYQELRRHARRVHPTTRPSDID  230 (381)
Q Consensus       171 ~CPLCRG~VkGW--tVVe~AR~yLN~KkRSCs~E~CsF~GtY~ELRKHaR~~HP~aRPseVD  230 (381)
                      .||+||..+.--  ......++.++.-+-.|...+|.++|+|.+|.+|.+.-|..+-|-.+|
T Consensus        55 ~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~gC~~~~~~~~l~~H~~~c~~~~~~~~~~  116 (118)
T 3hct_A           55 KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALLEHHHH  116 (118)
T ss_dssp             BCTTTCCBCCGGGCEECHHHHHHHHTSEEECSSTTCCCEEEGGGSGGGTSSSCC--------
T ss_pred             CCCCCCCCcCHHhcccCHHHHHHHccceeECCCCCCCCEEeeHHHHHHHHHchhhhhhhccc
Confidence            699999998763  344567788888888999999999999999999999999988877665


No 2  
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.11  E-value=1.1e-06  Score=70.66  Aligned_cols=50  Identities=20%  Similarity=0.361  Sum_probs=39.3

Q ss_pred             ccCccccccccceEE---cchHHHhhcccCCCCcccCCcccccHHHHHHHHhh
Q 016837          170 LKCPMCRGAILGWEV---VEEARKYLNLKRRTCSRESCSFVGNYQELRRHARR  219 (381)
Q Consensus       170 L~CPLCRG~VkGWtV---Ve~AR~yLN~KkRSCs~E~CsF~GtY~ELRKHaR~  219 (381)
                      ..||+||..+..-.+   .....+.++.-+-.|...+|.++|+|.+|.+|.+.
T Consensus        59 ~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~~~~~~~~~~H~~~  111 (116)
T 1rmd_A           59 SYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSLEKYNHHVSS  111 (116)
T ss_dssp             SBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCCEEEHHHHHHHHHT
T ss_pred             CcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcchhhHhHHHHHHHH
Confidence            359999999876443   34455667777778999999999999999999863


No 3  
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.26  E-value=0.00011  Score=62.47  Aligned_cols=50  Identities=20%  Similarity=0.412  Sum_probs=39.6

Q ss_pred             ccCcccccccc-----------ceEEcchHHHhhcccCCCCcccCCcccccHHHHHH-HHhh
Q 016837          170 LKCPMCRGAIL-----------GWEVVEEARKYLNLKRRTCSRESCSFVGNYQELRR-HARR  219 (381)
Q Consensus       170 L~CPLCRG~Vk-----------GWtVVe~AR~yLN~KkRSCs~E~CsF~GtY~ELRK-HaR~  219 (381)
                      ..||+||.++.           .......+++.|+.-+=.|...+|.+.|++.+|.. |...
T Consensus        67 ~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v~Cpn~GC~~~~~l~~l~~~H~~~  128 (141)
T 3knv_A           67 QNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKEYESCHEGR  128 (141)
T ss_dssp             EECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEEECCSTTCCCEEEHHHHHHHTTTC
T ss_pred             CCCCCCCCcccccccccccchhhhcccHHHHHHHcccccccCCCCCCCEeEHHHHHHHHHHH
Confidence            46999999752           23355667778888888899999999999999998 8743


No 4  
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.18  E-value=0.00017  Score=61.39  Aligned_cols=20  Identities=35%  Similarity=0.763  Sum_probs=16.0

Q ss_pred             ccccCccccCCCcchhhhhc
Q 016837           48 DEISCPICMDHPHNAVLLIC   67 (381)
Q Consensus        48 edatCPICME~PHNAVLLlC   67 (381)
                      ++.+||||++...++|.+.|
T Consensus        17 ~~~~C~IC~~~~~~pv~~~C   36 (170)
T 3hcs_A           17 SKYECPICLMALREAVQTPC   36 (170)
T ss_dssp             GGGBCTTTCSBCSSEEECTT
T ss_pred             CCCCCCCCChhhcCcEECCC
Confidence            56799999999998876433


No 5  
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.29  E-value=0.0014  Score=54.42  Aligned_cols=32  Identities=34%  Similarity=0.746  Sum_probs=23.6

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHH
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRY   92 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQF   92 (381)
                      ++.+||||++...++|+|-|            +-.| +..|+.++
T Consensus        52 ~~~~C~iC~~~~~~~~~~~C------------gH~f-c~~Ci~~~   83 (138)
T 4ayc_A           52 NELQCIICSEYFIEAVTLNC------------AHSF-CSYCINEW   83 (138)
T ss_dssp             HHSBCTTTCSBCSSEEEETT------------SCEE-EHHHHHHH
T ss_pred             ccCCCcccCcccCCceECCC------------CCCc-cHHHHHHH
Confidence            45789999999999998754            3333 45787665


No 6  
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.25  E-value=0.0027  Score=50.33  Aligned_cols=48  Identities=23%  Similarity=0.324  Sum_probs=28.6

Q ss_pred             ccccccCccccCCCcchhhhhccccCCCCcccc------cCCCCccchhHHHHHH
Q 016837           46 ELDEISCPICMDHPHNAVLLICSSHDKGCRSYI------CDTSYRHSNCLDRYKK   94 (381)
Q Consensus        46 eWedatCPICME~PHNAVLLlCSSh~KGCRPYM------CdTSyRHSNCLDQFkK   94 (381)
                      ...+..|||||+.-..++...=..-.++-.|++      |+-.| |..||+++-+
T Consensus        22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~   75 (114)
T 1v87_A           22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYC   75 (114)
T ss_dssp             SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHH
T ss_pred             CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHH
Confidence            346679999999876655322112223333333      55433 7889998864


No 7  
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=96.06  E-value=0.0037  Score=43.24  Aligned_cols=35  Identities=31%  Similarity=0.701  Sum_probs=23.8

Q ss_pred             cccccCccccCCCcc----hhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           47 LDEISCPICMDHPHN----AVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        47 WedatCPICME~PHN----AVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      .++..|||||+...+    .++|.|            +-. =|..|++++-+
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C------------gH~-fc~~Ci~~~~~   41 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLPC------------GHL-LHRTCYEEMLK   41 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECTT------------SCE-EETTHHHHHHH
T ss_pred             CCCCcCcccChhhcCCCcCeEecCC------------CCc-ccHHHHHHHHH
Confidence            467889999998765    444443            332 26789988754


No 8  
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.06  E-value=0.0022  Score=51.96  Aligned_cols=34  Identities=21%  Similarity=0.594  Sum_probs=26.4

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      ++.+||||++...++|.|.|            +-+| +..|+.++-+
T Consensus        51 ~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~   84 (124)
T 3fl2_A           51 ETFQCICCQELVFRPITTVC------------QHNV-CKDCLDRSFR   84 (124)
T ss_dssp             HHTBCTTTSSBCSSEEECTT------------SCEE-EHHHHHHHHH
T ss_pred             cCCCCCcCChHHcCcEEeeC------------CCcc-cHHHHHHHHh
Confidence            67899999999999998744            4444 5679888765


No 9  
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=95.90  E-value=0.0044  Score=46.18  Aligned_cols=37  Identities=35%  Similarity=0.704  Sum_probs=27.3

Q ss_pred             cccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHHh
Q 016837           47 LDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKL   95 (381)
Q Consensus        47 WedatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa   95 (381)
                      -++.+||||++...++|.|.+           |+-+| +..|++++-+.
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~-----------CgH~f-C~~Ci~~~~~~   49 (74)
T 2yur_A           13 PDELLCLICKDIMTDAVVIPC-----------CGNSY-CDECIRTALLE   49 (74)
T ss_dssp             CGGGSCSSSCCCCTTCEECSS-----------SCCEE-CTTHHHHHHHH
T ss_pred             CCCCCCcCCChHHhCCeEcCC-----------CCCHH-HHHHHHHHHHh
Confidence            467899999999999998751           23223 46799888763


No 10 
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.85  E-value=0.0037  Score=46.16  Aligned_cols=36  Identities=22%  Similarity=0.384  Sum_probs=26.8

Q ss_pred             cccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           47 LDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        47 WedatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      -++..||||++.+.++|.|.           .|+-.| +..|+.++-+
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~-----------~CgH~f-C~~Ci~~~~~   48 (72)
T 2djb_A           13 TPYILCSICKGYLIDATTIT-----------ECLHTF-CKSCIVRHFY   48 (72)
T ss_dssp             CGGGSCTTTSSCCSSCEECS-----------SSCCEE-CHHHHHHHHH
T ss_pred             CCCCCCCCCChHHHCcCEEC-----------CCCCHH-HHHHHHHHHH
Confidence            46789999999999988652           244445 6788888765


No 11 
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=95.73  E-value=0.0036  Score=49.42  Aligned_cols=38  Identities=24%  Similarity=0.496  Sum_probs=27.3

Q ss_pred             hcccccccCccccCCCcchhh-hhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           44 HKELDEISCPICMDHPHNAVL-LICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        44 ~keWedatCPICME~PHNAVL-LlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      .+--++.+||||++.+.++|. +.|            +-.| +..|+.++-+
T Consensus        17 ~~l~~~~~C~IC~~~~~~p~~~~~C------------gH~F-C~~Ci~~~~~   55 (100)
T 3lrq_A           17 ESIAEVFRCFICMEKLRDARLCPHC------------SKLC-CFSCIRRWLT   55 (100)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEECTTT------------CCEE-EHHHHHHHHH
T ss_pred             ccCCCCCCCccCCccccCccccCCC------------CChh-hHHHHHHHHH
Confidence            333478999999999999987 544            3334 5678877654


No 12 
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.44  E-value=0.0054  Score=47.73  Aligned_cols=35  Identities=26%  Similarity=0.665  Sum_probs=24.8

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      ++.+||||++...++|.|.           -|+-+| +..|+.++-+
T Consensus        21 ~~~~C~IC~~~~~~p~~~~-----------~CgH~f-C~~Ci~~~~~   55 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIP-----------QCSHNY-CSLCIRKFLS   55 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECT-----------TTCCEE-EHHHHHHHHT
T ss_pred             CCCCcccCChhhCCcCEEC-----------CCCCHh-hHHHHHHHHH
Confidence            5689999999999988773           133333 4678877654


No 13 
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.32  E-value=0.01  Score=46.44  Aligned_cols=34  Identities=24%  Similarity=0.615  Sum_probs=25.9

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      ++..||||++.+.++|+|.            |+-.| +..|+.++-+
T Consensus        20 ~~~~C~IC~~~~~~p~~~~------------CgH~f-C~~Ci~~~~~   53 (112)
T 1jm7_A           20 KILECPICLELIKEPVSTK------------CDHIF-CKFCMLKLLN   53 (112)
T ss_dssp             HHTSCSSSCCCCSSCCBCT------------TSCCC-CSHHHHHHHH
T ss_pred             CCCCCcccChhhcCeEECC------------CCCHH-HHHHHHHHHH
Confidence            5678999999999998764            44444 5678888765


No 14 
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.27  E-value=0.0079  Score=43.51  Aligned_cols=35  Identities=14%  Similarity=0.319  Sum_probs=26.4

Q ss_pred             cccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           47 LDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        47 WedatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      -++..||||++...++|+|.            |+-.| +..|+.++-+
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~------------CgH~f-C~~Ci~~~~~   47 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTE------------CGHRF-CESCMAALLS   47 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCS------------SSCCC-CHHHHHHHHT
T ss_pred             CcCCCCCCCChHhcCeeECC------------CCCHH-HHHHHHHHHH
Confidence            35788999999999988764            44444 5688888764


No 15 
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=95.13  E-value=0.0061  Score=51.61  Aligned_cols=35  Identities=26%  Similarity=0.629  Sum_probs=25.9

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      ++..||||++...++|.++           -|+-.| |..|++++-+
T Consensus        53 ~~~~C~IC~~~~~~p~~~~-----------~CgH~f-C~~Ci~~~~~   87 (165)
T 2ckl_B           53 SELMCPICLDMLKNTMTTK-----------ECLHRF-CADCIITALR   87 (165)
T ss_dssp             HHHBCTTTSSBCSSEEEET-----------TTCCEE-EHHHHHHHHH
T ss_pred             CCCCCcccChHhhCcCEeC-----------CCCChh-HHHHHHHHHH
Confidence            6679999999999998772           234334 5678888765


No 16 
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=95.05  E-value=0.015  Score=41.85  Aligned_cols=34  Identities=29%  Similarity=0.757  Sum_probs=23.6

Q ss_pred             ccccCccccCCCcch-hhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           48 DEISCPICMDHPHNA-VLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        48 edatCPICME~PHNA-VLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      ++..||||++.+.+. ++|.|            +-.| |..|+.++-+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C------------~H~f-c~~Ci~~~~~   38 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPC------------LHAF-CYVCITRWIR   38 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTT------------TEEE-STTHHHHHHH
T ss_pred             CCCCCeeCCccccCCcEecCC------------CCee-HHHHHHHHHh
Confidence            356899999999885 55544            3222 5689988754


No 17 
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.59  E-value=0.046  Score=43.15  Aligned_cols=34  Identities=26%  Similarity=0.554  Sum_probs=24.4

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHH
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYK   93 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFk   93 (381)
                      ++.+||||++...++|.|.           -|+-+| +..|+.++-
T Consensus        14 ~~~~C~IC~~~~~~p~~~~-----------~CgH~f-C~~Ci~~~~   47 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDATTII-----------ECLHSF-CKTCIVRYL   47 (108)
T ss_dssp             GGTBCTTTSSBCSSEEEET-----------TTCCEE-EHHHHHHHH
T ss_pred             CcCCCccCChHHhCcCEeC-----------CCCChh-hHHHHHHHH
Confidence            6789999999999998762           244444 457777664


No 18 
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=94.57  E-value=0.016  Score=41.97  Aligned_cols=36  Identities=28%  Similarity=0.565  Sum_probs=23.8

Q ss_pred             ccccccCccccCCCc---chhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           46 ELDEISCPICMDHPH---NAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        46 eWedatCPICME~PH---NAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      +=++..|+||++...   ..+.|.            |+-.| |..|+.++-+
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~------------C~H~f-c~~Ci~~~~~   49 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLP------------CMHLF-HQVCVDQWLI   49 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECT------------TSCEE-EHHHHHHHHH
T ss_pred             CCCCCCCeeCCccccCCCcEEEeC------------CCCHH-HHHHHHHHHH
Confidence            346789999988653   334443            54444 7889988765


No 19 
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.30  E-value=0.012  Score=43.62  Aligned_cols=36  Identities=25%  Similarity=0.643  Sum_probs=23.9

Q ss_pred             ccccccCccccCCCcch---hhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           46 ELDEISCPICMDHPHNA---VLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        46 eWedatCPICME~PHNA---VLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      .-++..|+|||+...+.   +.|.|            +-. =|..|++++-+
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C------------~H~-fh~~Ci~~w~~   58 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPC------------NHE-FHAKCVDKWLK   58 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETT------------TEE-EETTHHHHHHH
T ss_pred             cCCCCCCeECCcccCCCCeEEEECC------------CCH-hHHHHHHHHHH
Confidence            34678999999876554   44433            322 36889998864


No 20 
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.17  E-value=0.024  Score=41.96  Aligned_cols=34  Identities=21%  Similarity=0.657  Sum_probs=22.1

Q ss_pred             ccccCccccCCCcch---hhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           48 DEISCPICMDHPHNA---VLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        48 edatCPICME~PHNA---VLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      ++..|+|||+...+.   ++|.            |+-.| |..|+.++-+
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~------------C~H~f-c~~Ci~~~~~   50 (78)
T 2ect_A           14 SGLECPVCKEDYALGESVRQLP------------CNHLF-HDSCIVPWLE   50 (78)
T ss_dssp             SSCCCTTTTSCCCTTSCEEECT------------TSCEE-ETTTTHHHHT
T ss_pred             CCCCCeeCCccccCCCCEEEeC------------CCCee-cHHHHHHHHH
Confidence            577999998876544   3333            44333 6789988753


No 21 
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=94.03  E-value=0.021  Score=39.47  Aligned_cols=33  Identities=27%  Similarity=0.759  Sum_probs=21.2

Q ss_pred             ccccCccccCCCcc---hhhhhccccCCCCcccccCCCCccchhHHHH
Q 016837           48 DEISCPICMDHPHN---AVLLICSSHDKGCRSYICDTSYRHSNCLDRY   92 (381)
Q Consensus        48 edatCPICME~PHN---AVLLlCSSh~KGCRPYMCdTSyRHSNCLDQF   92 (381)
                      ++..|+|||+...+   .+.|.           -|+-. =|..|++++
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~-----------~C~H~-f~~~Ci~~w   39 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLP-----------RCGHG-FHAECVDMW   39 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECS-----------SSCCE-ECTTHHHHT
T ss_pred             CCCcCccCCccccCCCceEECC-----------CCCCc-ccHHHHHHH
Confidence            46789999998766   33332           13333 367898776


No 22 
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.49  E-value=0.063  Score=41.86  Aligned_cols=40  Identities=23%  Similarity=0.558  Sum_probs=27.2

Q ss_pred             ccccccCccccCC--CcchhhhhccccCCCCcccccC--CCCccchhHHHHHHh
Q 016837           46 ELDEISCPICMDH--PHNAVLLICSSHDKGCRSYICD--TSYRHSNCLDRYKKL   95 (381)
Q Consensus        46 eWedatCPICME~--PHNAVLLlCSSh~KGCRPYMCd--TSyRHSNCLDQFkKa   95 (381)
                      +-++..|+||++.  +-+.++|-|          -|.  .-|-|..||+|+-+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l~~pC----------~C~Gs~h~fH~~Cl~~Wl~~   55 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPLITPC----------HCTGSLHFVHQACLQQWIKS   55 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCEECSS----------SCCSSSCCEETTHHHHHHHH
T ss_pred             CCCCCCCeEcCccccCCCeeEecc----------ccCCcCCeeCHHHHHHHHhh
Confidence            4567899999964  244454444          122  357899999999874


No 23 
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=93.27  E-value=0.019  Score=44.56  Aligned_cols=34  Identities=29%  Similarity=0.580  Sum_probs=22.4

Q ss_pred             cccccCccccCCCcc---hhhhhccccCCCCcccccCCCCccchhHHHHH
Q 016837           47 LDEISCPICMDHPHN---AVLLICSSHDKGCRSYICDTSYRHSNCLDRYK   93 (381)
Q Consensus        47 WedatCPICME~PHN---AVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFk   93 (381)
                      -++..|+|||+...+   .+.|-            |+-. =|..|++++-
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~------------C~H~-Fh~~Ci~~wl   74 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELP------------CHHY-FHKPCVSIWL   74 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEET------------TTEE-EEHHHHHHHH
T ss_pred             CCCCCCcccChhhcCCCcEEecC------------CCCh-HHHHHHHHHH
Confidence            367789999987655   44343            4432 2678998875


No 24 
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=92.85  E-value=0.1  Score=40.36  Aligned_cols=11  Identities=45%  Similarity=1.365  Sum_probs=9.8

Q ss_pred             cccccCccccC
Q 016837           47 LDEISCPICMD   57 (381)
Q Consensus        47 WedatCPICME   57 (381)
                      -++.+||||||
T Consensus         9 ~~~~~CpICle   19 (78)
T 1e4u_A            9 EDPVECPLCME   19 (78)
T ss_dssp             CCCCBCTTTCC
T ss_pred             ccCCcCCccCc
Confidence            47889999999


No 25 
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.56  E-value=0.051  Score=39.82  Aligned_cols=37  Identities=19%  Similarity=0.379  Sum_probs=22.3

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      ++..|+|||+...+.+.+.         -.-|+-. =|..|+.++-+
T Consensus        14 ~~~~C~IC~~~~~~~~~~~---------~~~C~H~-f~~~Ci~~~~~   50 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELG---------ICPCKHA-FHRKCLIKWLE   50 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEE---------EETTTEE-EEHHHHHHHHH
T ss_pred             CCCCCcCCCcccCCCCcEE---------EcCCCCE-ecHHHHHHHHH
Confidence            4678999999865543221         0124333 26789988764


No 26 
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=92.07  E-value=0.082  Score=52.59  Aligned_cols=32  Identities=19%  Similarity=0.584  Sum_probs=24.8

Q ss_pred             ccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           50 ISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        50 atCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      ..|+|||+.+-++|++-|.            -.| +..|+.++.+
T Consensus       333 ~~C~ICle~~~~pv~lpCG------------H~F-C~~Ci~~wl~  364 (389)
T 2y1n_A          333 QLCKICAENDKDVKIEPCG------------HLM-CTSCLTSWQE  364 (389)
T ss_dssp             SBCTTTSSSBCCEEEETTC------------CEE-CHHHHHHHHH
T ss_pred             CCCCccCcCCCCeEEeCCC------------Chh-hHHHHHHHHh
Confidence            6899999999998887663            233 5689988865


No 27 
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=91.76  E-value=0.048  Score=43.09  Aligned_cols=36  Identities=36%  Similarity=0.626  Sum_probs=26.6

Q ss_pred             cccccCccccCCCcch-------hhhhccccCCCCcccccCCCCccchhHHHHHHh
Q 016837           47 LDEISCPICMDHPHNA-------VLLICSSHDKGCRSYICDTSYRHSNCLDRYKKL   95 (381)
Q Consensus        47 WedatCPICME~PHNA-------VLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa   95 (381)
                      .++.+||||++..-+.       |+|.|            +-.| |..|++++-+.
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C------------gH~f-c~~Ci~~~~~~   47 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTEC------------GHVF-CSQCLRDSLKN   47 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETT------------CCEE-EHHHHHHHHTT
T ss_pred             CCCCCCcccChhhhCccccccCeEecCC------------CChh-hHHHHHHHHHh
Confidence            4688999999987776       66665            3333 67899998653


No 28 
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.53  E-value=0.042  Score=41.11  Aligned_cols=21  Identities=38%  Similarity=0.768  Sum_probs=18.5

Q ss_pred             cccccCccccCCCcchhhhhc
Q 016837           47 LDEISCPICMDHPHNAVLLIC   67 (381)
Q Consensus        47 WedatCPICME~PHNAVLLlC   67 (381)
                      -++..|+|||+.+.++|+|-|
T Consensus        23 ~~~~~C~IC~~~~~~~~~~pC   43 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAIVFVPC   43 (75)
T ss_dssp             HHHHSCSSSCSSCCCBCCSSS
T ss_pred             CCCCCCCcCCCCCCCEEEecC
Confidence            366789999999999999877


No 29 
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=90.21  E-value=0.053  Score=40.68  Aligned_cols=23  Identities=35%  Similarity=0.700  Sum_probs=19.7

Q ss_pred             cccccccCccccCCCcchhhhhc
Q 016837           45 KELDEISCPICMDHPHNAVLLIC   67 (381)
Q Consensus        45 keWedatCPICME~PHNAVLLlC   67 (381)
                      +--++..|+|||+.+.++|+|-|
T Consensus        20 ~~~~~~~C~iC~~~~~~~~~~pC   42 (74)
T 4ic3_A           20 RLQEEKLCKICMDRNIAIVFVPC   42 (74)
T ss_dssp             HHHHHTBCTTTSSSBCCEEEETT
T ss_pred             cCccCCCCCCCCCCCCCEEEcCC
Confidence            33467899999999999999877


No 30 
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.18  E-value=0.096  Score=36.24  Aligned_cols=35  Identities=23%  Similarity=0.655  Sum_probs=25.7

Q ss_pred             ccccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHH
Q 016837           46 ELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYK   93 (381)
Q Consensus        46 eWedatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFk   93 (381)
                      --++..||||++...++|+|.|            +-.| +..|+.++-
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~   46 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEPVIIEC------------GHNF-CKACITRWW   46 (58)
T ss_dssp             SCCCCBCSSSCCBCSSCCCCSS------------CCCC-CHHHHHHHT
T ss_pred             cccCCCCccCCcccCccEeCCC------------CCcc-CHHHHHHHH
Confidence            3467899999999999987644            3333 467888774


No 31 
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.14  E-value=0.15  Score=38.85  Aligned_cols=14  Identities=21%  Similarity=0.487  Sum_probs=11.1

Q ss_pred             ccccCccccCCCcc
Q 016837           48 DEISCPICMDHPHN   61 (381)
Q Consensus        48 edatCPICME~PHN   61 (381)
                      ++.+|+|||+.-.+
T Consensus        14 ~~~~C~IC~~~~~~   27 (81)
T 2ecl_A           14 ECDTCAICRVQVMD   27 (81)
T ss_dssp             CCSCBTTTTBCTTS
T ss_pred             CCCCCcccChhhhc
Confidence            68899999986544


No 32 
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.36  E-value=0.12  Score=36.84  Aligned_cols=36  Identities=25%  Similarity=0.700  Sum_probs=27.1

Q ss_pred             cccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHHh
Q 016837           47 LDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKL   95 (381)
Q Consensus        47 WedatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa   95 (381)
                      -++..||||++...++|+|.|            +-.| +..|+.++-+.
T Consensus        18 ~~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~   53 (63)
T 2ysj_A           18 QEEVICPICLDILQKPVTIDC------------GHNF-CLKCITQIGET   53 (63)
T ss_dssp             CCCCBCTTTCSBCSSCEECTT------------SSEE-CHHHHHHHHHH
T ss_pred             ccCCCCCcCCchhCCeEEeCC------------CCcc-hHHHHHHHHHc
Confidence            467899999999999988754            3233 46788888763


No 33 
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=87.59  E-value=0.35  Score=39.41  Aligned_cols=44  Identities=23%  Similarity=0.645  Sum_probs=23.5

Q ss_pred             ccccCccccCCCcchhhhhcc-----ccCCCCccc--ccCCCCccchhHHHHH
Q 016837           48 DEISCPICMDHPHNAVLLICS-----SHDKGCRSY--ICDTSYRHSNCLDRYK   93 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCS-----Sh~KGCRPY--MCdTSyRHSNCLDQFk   93 (381)
                      ++.+|+|||+.=..... .|-     +...+|...  -|+-. =|..|++++-
T Consensus        36 ~~d~CaIC~~~~~~~c~-~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl   86 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCI-ECQANQASATSEECTVAWGVCNHA-FHFHCISRWL   86 (106)
T ss_dssp             CSCCCSSSCSCTTSCCT-THHHHTTCC---CCCEEEETTSCE-EEHHHHHHHH
T ss_pred             CCCCCccCChhHhCcCc-hhhccccccCCccceEeecccCcE-ECHHHHHHHH
Confidence            67899999987555321 232     222333222  25443 3677887774


No 34 
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.35  E-value=0.19  Score=35.67  Aligned_cols=24  Identities=25%  Similarity=0.541  Sum_probs=20.5

Q ss_pred             cccccccCccccCCCcchhhhhcc
Q 016837           45 KELDEISCPICMDHPHNAVLLICS   68 (381)
Q Consensus        45 keWedatCPICME~PHNAVLLlCS   68 (381)
                      .+.++.+||||++...+.|+|-|.
T Consensus         2 ee~~~~~C~IC~~~~~~p~~l~Cg   25 (56)
T 1bor_A            2 EEFQFLRCQQCQAEAKCPKLLPCL   25 (56)
T ss_dssp             CSCCCSSCSSSCSSCBCCSCSTTS
T ss_pred             CcccCCCceEeCCccCCeEEcCCC
Confidence            356889999999999999988774


No 35 
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.24  E-value=0.16  Score=37.20  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=19.9

Q ss_pred             hcccccccCccccCCCcchhhhhc
Q 016837           44 HKELDEISCPICMDHPHNAVLLIC   67 (381)
Q Consensus        44 ~keWedatCPICME~PHNAVLLlC   67 (381)
                      ....++..||||++.+.++|+|.|
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~C   33 (71)
T 2d8t_A           10 APSLTVPECAICLQTCVHPVSLPC   33 (71)
T ss_dssp             CSSSSCCBCSSSSSBCSSEEEETT
T ss_pred             ccCCCCCCCccCCcccCCCEEccC
Confidence            345788999999999999988754


No 36 
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.83  E-value=0.19  Score=37.61  Aligned_cols=21  Identities=33%  Similarity=0.687  Sum_probs=18.6

Q ss_pred             ccccCccccCCCcchhhhhcc
Q 016837           48 DEISCPICMDHPHNAVLLICS   68 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCS   68 (381)
                      ++..|+|||+.|-+.|||-|-
T Consensus        14 ~~~~C~IC~~~~~~~v~~pCg   34 (68)
T 2ea5_A           14 NSKDCVVCQNGTVNWVLLPCR   34 (68)
T ss_dssp             CSSCCSSSSSSCCCCEETTTT
T ss_pred             CCCCCCCcCcCCCCEEEECCC
Confidence            567899999999999999874


No 37 
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=86.35  E-value=0.18  Score=39.80  Aligned_cols=16  Identities=44%  Similarity=0.879  Sum_probs=10.8

Q ss_pred             cccccCccccCCCcch
Q 016837           47 LDEISCPICMDHPHNA   62 (381)
Q Consensus        47 WedatCPICME~PHNA   62 (381)
                      =++..|+||++...+.
T Consensus        70 ~~~~~C~iC~~~~~~~   85 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEI   85 (133)
T ss_dssp             SSSCBCTTTCCBHHHH
T ss_pred             CCCCCCCCCCCccccc
Confidence            3567788888766554


No 38 
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=86.31  E-value=0.08  Score=42.36  Aligned_cols=22  Identities=32%  Similarity=0.268  Sum_probs=19.7

Q ss_pred             cccccCccccCCCcchhhhhcc
Q 016837           47 LDEISCPICMDHPHNAVLLICS   68 (381)
Q Consensus        47 WedatCPICME~PHNAVLLlCS   68 (381)
                      =++.+||||++...+.|++-|.
T Consensus        20 p~~~~CpI~~~~m~dPV~~~cG   41 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDPVVLPSS   41 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTT
T ss_pred             cHhcCCcCccccccCCeECCCC
Confidence            3688999999999999999876


No 39 
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.54  E-value=0.2  Score=36.26  Aligned_cols=35  Identities=26%  Similarity=0.732  Sum_probs=25.0

Q ss_pred             cccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           47 LDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        47 WedatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      -++..||||++...++|+|.|            +-.| +..|+.++.+
T Consensus        18 ~~~~~C~IC~~~~~~~~~~~C------------gH~f-C~~Ci~~~~~   52 (73)
T 2ysl_A           18 QEEVICPICLDILQKPVTIDC------------GHNF-CLKCITQIGE   52 (73)
T ss_dssp             CCCCBCTTTCSBCSSEEECTT------------CCEE-EHHHHHHHCS
T ss_pred             ccCCEeccCCcccCCeEEcCC------------CChh-hHHHHHHHHH
Confidence            467899999999999988754            2222 4577777643


No 40 
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=85.29  E-value=0.16  Score=38.96  Aligned_cols=21  Identities=19%  Similarity=0.651  Sum_probs=18.3

Q ss_pred             ccccCccccCCCcchhhhhcc
Q 016837           48 DEISCPICMDHPHNAVLLICS   68 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCS   68 (381)
                      ++..|+|||+.+.++|+|-|-
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCg   37 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCG   37 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTC
T ss_pred             CCCEeEEeCcccCcEEEECCC
Confidence            567899999999999998773


No 41 
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=84.27  E-value=0.28  Score=35.90  Aligned_cols=35  Identities=26%  Similarity=0.681  Sum_probs=25.3

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHHh
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKL   95 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa   95 (381)
                      ++..||||++...+.|+|.|            +-.| +..|+.++-+.
T Consensus        18 ~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~   52 (85)
T 2ecw_A           18 EEVTCPICLELLKEPVSADC------------NHSF-CRACITLNYES   52 (85)
T ss_dssp             TTTSCTTTCSCCSSCEECTT------------SCCB-CHHHHHHHHHH
T ss_pred             cCCCCcCCChhhCcceeCCC------------CCHH-HHHHHHHHHHh
Confidence            56799999999999886654            3322 45788877653


No 42 
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=84.06  E-value=0.17  Score=37.09  Aligned_cols=20  Identities=35%  Similarity=0.984  Sum_probs=16.8

Q ss_pred             ccccCccccCCCcchhhhhc
Q 016837           48 DEISCPICMDHPHNAVLLIC   67 (381)
Q Consensus        48 edatCPICME~PHNAVLLlC   67 (381)
                      ++.+||||++...++|+|.|
T Consensus        11 ~~~~C~IC~~~~~~p~~l~C   30 (79)
T 2egp_A           11 EEVTCPICLELLTEPLSLDC   30 (79)
T ss_dssp             CCCEETTTTEECSSCCCCSS
T ss_pred             cCCCCcCCCcccCCeeECCC
Confidence            67899999999999887643


No 43 
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.42  E-value=0.33  Score=35.50  Aligned_cols=35  Identities=31%  Similarity=0.760  Sum_probs=25.9

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHHh
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKL   95 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa   95 (381)
                      ++..||||++...++|+|.|            +-.| +..|+.++-+.
T Consensus        18 ~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~   52 (85)
T 2ecv_A           18 EEVTCPICLELLTQPLSLDC------------GHSF-CQACLTANHKK   52 (85)
T ss_dssp             CCCCCTTTCSCCSSCBCCSS------------SCCB-CTTHHHHHHHH
T ss_pred             CCCCCCCCCcccCCceeCCC------------CCHH-HHHHHHHHHHH
Confidence            57899999999999887643            3333 45799887653


No 44 
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.79  E-value=0.31  Score=36.34  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=26.9

Q ss_pred             cccccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           45 KELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        45 keWedatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      ..-++..||||++...++|+|.|            +-.| +..|+.++-+
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~   47 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNPVVTKC------------RHYF-CESCALEHFR   47 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSEEECTT------------SCEE-EHHHHHHHHH
T ss_pred             cCCCCCCCcCCCchhcCeeEccC------------CCHh-HHHHHHHHHH
Confidence            34567899999999999887644            4344 5678887754


No 45 
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=82.73  E-value=0.32  Score=35.70  Aligned_cols=18  Identities=28%  Similarity=0.680  Sum_probs=16.2

Q ss_pred             ccccCccccCCCcchhhh
Q 016837           48 DEISCPICMDHPHNAVLL   65 (381)
Q Consensus        48 edatCPICME~PHNAVLL   65 (381)
                      ++..|+|||+.|-|+|+|
T Consensus         7 ~~~~C~IC~~~~~~~~~~   24 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIV   24 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEE
T ss_pred             CcCCCCcCCCCCCCEEEE
Confidence            567899999999999987


No 46 
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.34  E-value=0.37  Score=34.78  Aligned_cols=21  Identities=43%  Similarity=0.812  Sum_probs=17.0

Q ss_pred             ccccccCccccCCCcchhhhhc
Q 016837           46 ELDEISCPICMDHPHNAVLLIC   67 (381)
Q Consensus        46 eWedatCPICME~PHNAVLLlC   67 (381)
                      .-++..|||||+.+.+ |+|.|
T Consensus        12 ~~~~~~C~IC~~~~~~-~~~~C   32 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD-LILPC   32 (70)
T ss_dssp             CCCCCCCSSSCCSCCS-EEETT
T ss_pred             CCCCCCCeeCCcCccC-cccCC
Confidence            3467899999999988 77665


No 47 
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=78.93  E-value=0.34  Score=38.43  Aligned_cols=20  Identities=40%  Similarity=0.755  Sum_probs=17.5

Q ss_pred             ccccCccccCCCcchhhhhc
Q 016837           48 DEISCPICMDHPHNAVLLIC   67 (381)
Q Consensus        48 edatCPICME~PHNAVLLlC   67 (381)
                      ++.+||||++...++|.|-|
T Consensus        14 ~~~~C~iC~~~~~~p~~~~C   33 (115)
T 3l11_A           14 SECQCGICMEILVEPVTLPC   33 (115)
T ss_dssp             HHHBCTTTCSBCSSCEECTT
T ss_pred             CCCCCccCCcccCceeEcCC
Confidence            57899999999999998755


No 48 
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=78.89  E-value=0.23  Score=38.37  Aligned_cols=21  Identities=24%  Similarity=0.172  Sum_probs=18.5

Q ss_pred             cccccCccccCCCcchhhhhc
Q 016837           47 LDEISCPICMDHPHNAVLLIC   67 (381)
Q Consensus        47 WedatCPICME~PHNAVLLlC   67 (381)
                      -++.+||||++...+.|++-|
T Consensus        12 p~~~~CpI~~~~m~dPV~~~c   32 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPVRLPS   32 (85)
T ss_dssp             CTTTBCTTTCSBCSSEEECTT
T ss_pred             chheECcccCchhcCCeECCC
Confidence            368899999999999999865


No 49 
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=78.47  E-value=0.34  Score=36.72  Aligned_cols=20  Identities=40%  Similarity=0.663  Sum_probs=17.8

Q ss_pred             cccccCccccCCCcchhhhh
Q 016837           47 LDEISCPICMDHPHNAVLLI   66 (381)
Q Consensus        47 WedatCPICME~PHNAVLLl   66 (381)
                      -++.+||||++...++|+|.
T Consensus        11 ~~~~~C~IC~~~~~~p~~~~   30 (92)
T 3ztg_A           11 PDELLCLICKDIMTDAVVIP   30 (92)
T ss_dssp             CTTTEETTTTEECSSCEECT
T ss_pred             CcCCCCCCCChhhcCceECC
Confidence            46789999999999999886


No 50 
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=78.43  E-value=0.52  Score=34.44  Aligned_cols=17  Identities=18%  Similarity=0.688  Sum_probs=15.0

Q ss_pred             cccCccccCCCcchhhh
Q 016837           49 EISCPICMDHPHNAVLL   65 (381)
Q Consensus        49 datCPICME~PHNAVLL   65 (381)
                      +..|+||||.|-|+|+|
T Consensus         7 ~~~C~IC~~~~~~~~~~   23 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNII   23 (63)
T ss_dssp             GSBCTTTSSSBSCEEEE
T ss_pred             CCCCcccCCcCCCeEEE
Confidence            45799999999999887


No 51 
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.05  E-value=0.45  Score=33.67  Aligned_cols=35  Identities=37%  Similarity=0.673  Sum_probs=25.0

Q ss_pred             cccccCccccCCCcch-------hhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           47 LDEISCPICMDHPHNA-------VLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        47 WedatCPICME~PHNA-------VLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      -++..||||++...+.       |+|.|            +-.| |..|++++-+
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C------------gH~f-c~~Ci~~~~~   54 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTEC------------GHVF-CSQCLRDSLK   54 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSS------------SCEE-EHHHHHHHHH
T ss_pred             CCCCCCcccCccccccccccCCeEeCCC------------CChh-cHHHHHHHHH
Confidence            4678999999998887       55544            3322 6788888764


No 52 
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=76.88  E-value=1.2  Score=32.77  Aligned_cols=38  Identities=26%  Similarity=0.534  Sum_probs=25.9

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCC--CCccchhHHHHHHh
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDT--SYRHSNCLDRYKKL   95 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdT--SyRHSNCLDQFkKa   95 (381)
                      +...|.||++-..+.+++-|          .|..  .|-|..||++..+.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC----------~C~gs~~~~H~~Cl~~W~~~   44 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRAC----------GCTGELENVHRSCLSTWLTI   44 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSC----------CCSSGGGSCCHHHHHHHHHH
T ss_pred             CCCEeEEeecCCCCceecCc----------CCCCchhhhHHHHHHHHHHh
Confidence            56789999987655432222          3433  37899999999863


No 53 
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=76.87  E-value=0.43  Score=33.30  Aligned_cols=34  Identities=38%  Similarity=0.690  Sum_probs=24.2

Q ss_pred             ccccCccccCCCcch-------hhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           48 DEISCPICMDHPHNA-------VLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        48 edatCPICME~PHNA-------VLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      ++..||||++...+.       |++.|            +-.| |..|++++-+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~C------------gH~f-c~~Ci~~~~~   42 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTEC------------GHVF-CSQCLRDSLK   42 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETT------------SCEE-EHHHHHHHHH
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCC------------CCch-hHHHHHHHHH
Confidence            678999999998776       45544            2222 6789988765


No 54 
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=76.65  E-value=0.47  Score=33.96  Aligned_cols=37  Identities=35%  Similarity=0.656  Sum_probs=26.6

Q ss_pred             cccccccCccccCCCcch-------hhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           45 KELDEISCPICMDHPHNA-------VLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        45 keWedatCPICME~PHNA-------VLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      +..++..||||++...+.       |+|.|            +-.| |..|++++-+
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~C------------gH~f-c~~Ci~~~~~   49 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTEC------------GHVF-CSQCLRDSLK   49 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTT------------SCEE-EHHHHHHHHH
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCC------------CChH-hHHHHHHHHH
Confidence            456789999999998887       55555            2222 6789988754


No 55 
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=76.53  E-value=0.29  Score=39.20  Aligned_cols=20  Identities=25%  Similarity=0.218  Sum_probs=18.2

Q ss_pred             ccccCccccCCCcchhhhhc
Q 016837           48 DEISCPICMDHPHNAVLLIC   67 (381)
Q Consensus        48 edatCPICME~PHNAVLLlC   67 (381)
                      ++.+||||++...+.|++-|
T Consensus        28 ~~~~CpI~~~~m~dPV~~~c   47 (100)
T 2kre_A           28 DEFRDPLMDTLMTDPVRLPS   47 (100)
T ss_dssp             TTTBCTTTCSBCSSEEEETT
T ss_pred             HhhCCcCccCcccCCeECCC
Confidence            67899999999999999875


No 56 
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=75.99  E-value=0.66  Score=44.96  Aligned_cols=21  Identities=33%  Similarity=0.865  Sum_probs=19.2

Q ss_pred             cccccCccccCCCcchhhhhc
Q 016837           47 LDEISCPICMDHPHNAVLLIC   67 (381)
Q Consensus        47 WedatCPICME~PHNAVLLlC   67 (381)
                      -++..|||||+.+.++|+|-|
T Consensus       293 ~~~~~C~IC~~~~~~~v~lpC  313 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSVVFIPC  313 (345)
T ss_dssp             HTTCBCTTTSSSBCCEEEETT
T ss_pred             cCCCCCCccCCcCCceEEcCC
Confidence            477899999999999999987


No 57 
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.55  E-value=0.68  Score=34.38  Aligned_cols=36  Identities=28%  Similarity=0.665  Sum_probs=25.4

Q ss_pred             cccccCccccCCCcc----hhhhhccccCCCCcccccCCCCccchhHHHHHHh
Q 016837           47 LDEISCPICMDHPHN----AVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKL   95 (381)
Q Consensus        47 WedatCPICME~PHN----AVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa   95 (381)
                      -++..||||++...+    .|+|.|            +-.| |..|+.++-+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~C------------gH~f-C~~Ci~~~~~~   52 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHC------------GHTI-CRQCLEKLLAS   52 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSS------------SCEE-EHHHHHHHHHH
T ss_pred             cCCCCCccCCccccccCCCeEECCC------------CChh-hHHHHHHHHHc
Confidence            367889999999888    666544            2222 56788888763


No 58 
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=75.54  E-value=0.78  Score=33.69  Aligned_cols=20  Identities=20%  Similarity=0.567  Sum_probs=17.1

Q ss_pred             ccccCccccCCCcchhhhhc
Q 016837           48 DEISCPICMDHPHNAVLLIC   67 (381)
Q Consensus        48 edatCPICME~PHNAVLLlC   67 (381)
                      ++..||||++...+.|++.|
T Consensus         7 ~~~~C~IC~~~~~~Pv~~~C   26 (78)
T 1t1h_A            7 EYFRCPISLELMKDPVIVST   26 (78)
T ss_dssp             SSSSCTTTSCCCSSEEEETT
T ss_pred             ccCCCCCccccccCCEEcCC
Confidence            57899999999999998744


No 59 
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=75.39  E-value=0.74  Score=36.84  Aligned_cols=21  Identities=24%  Similarity=0.482  Sum_probs=18.5

Q ss_pred             cccccCccccCCCcchhhh-hc
Q 016837           47 LDEISCPICMDHPHNAVLL-IC   67 (381)
Q Consensus        47 WedatCPICME~PHNAVLL-lC   67 (381)
                      -++.+||||++...++|+| .|
T Consensus        20 ~~~~~C~IC~~~~~~pv~~~~C   41 (117)
T 1jm7_B           20 EKLLRCSRCTNILREPVCLGGC   41 (117)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSS
T ss_pred             hhCCCCCCCChHhhCccEeCCC
Confidence            5789999999999999988 55


No 60 
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=71.89  E-value=2.3  Score=29.27  Aligned_cols=20  Identities=30%  Similarity=0.405  Sum_probs=17.1

Q ss_pred             cccccHHHHHHHHhhhCCCC
Q 016837          205 SFVGNYQELRRHARRVHPTT  224 (381)
Q Consensus       205 sF~GtY~ELRKHaR~~HP~a  224 (381)
                      .+-+|+.+|..|-..+|+..
T Consensus        13 ~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B           13 KSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             CEESSHHHHHHHHHHHTSSS
T ss_pred             HHcCCHHHHHHHHHhccccC
Confidence            35689999999999999864


No 61 
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=71.65  E-value=0.75  Score=39.03  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=25.4

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      ++..||||++...++|.|.|            +-+| +..|+.++-+
T Consensus        77 ~~~~C~IC~~~~~~pv~~~C------------gH~f-C~~Ci~~~~~  110 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTEC------------FHNV-CKDCLQRSFK  110 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTT------------SCEE-EHHHHHHHHH
T ss_pred             cCCEeecCChhhcCCEEcCC------------CCch-hHHHHHHHHH
Confidence            56799999999999998654            3333 4578887765


No 62 
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=71.46  E-value=0.96  Score=40.11  Aligned_cols=28  Identities=21%  Similarity=0.490  Sum_probs=22.8

Q ss_pred             CCCCcc--cCCcccccHHHHHHHHhhhCCC
Q 016837          196 RRTCSR--ESCSFVGNYQELRRHARRVHPT  223 (381)
Q Consensus       196 kRSCs~--E~CsF~GtY~ELRKHaR~~HP~  223 (381)
                      +-+|..  ..|+|+|+|++|-.|.+..|..
T Consensus        36 p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~   65 (193)
T 2a25_A           36 PYSCPCPGASCKWQGSLDAVMPHLMHQHKS   65 (193)
T ss_dssp             CEECCCC--CCCCEECSTTHHHHHHHHCTT
T ss_pred             CccCCCCCCCCcCCCCHHHHHHHHHHHCCC
Confidence            344555  5699999999999999999985


No 63 
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=70.93  E-value=0.8  Score=40.27  Aligned_cols=21  Identities=10%  Similarity=0.080  Sum_probs=18.3

Q ss_pred             cccccCccccCCCcchhhhhc
Q 016837           47 LDEISCPICMDHPHNAVLLIC   67 (381)
Q Consensus        47 WedatCPICME~PHNAVLLlC   67 (381)
                      -++..||||++...+.|.+-|
T Consensus       206 ~~~~~c~i~~~~~~dPv~~~~  226 (281)
T 2c2l_A          206 PDYLCGKISFELMREPCITPS  226 (281)
T ss_dssp             CSTTBCTTTCSBCSSEEECSS
T ss_pred             CcccCCcCcCCHhcCCeECCC
Confidence            367899999999999998865


No 64 
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=70.83  E-value=0.62  Score=33.29  Aligned_cols=34  Identities=24%  Similarity=0.581  Sum_probs=21.8

Q ss_pred             ccccCccccC-CCcchh----hhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           48 DEISCPICMD-HPHNAV----LLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        48 edatCPICME-~PHNAV----LLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      |+.+||||++ ..-|++    ++.            |+-.| +..|++++..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~------------CgH~f-C~~Ci~~~~~   40 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNV------------CGHTL-CESCVDLLFV   40 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT------------TCCCE-EHHHHHHHHH
T ss_pred             CCCcCCcCCCCccCCCccCeecCC------------CCCHh-HHHHHHHHHH
Confidence            6789999999 555542    333            33333 5678887743


No 65 
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.03  E-value=1.9  Score=33.48  Aligned_cols=33  Identities=24%  Similarity=0.650  Sum_probs=23.1

Q ss_pred             ccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           50 ISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        50 atCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      ..|.||.+.=+.         .+-|.  .|+..| |..|+++|-+
T Consensus        16 ~~C~IC~~~i~~---------g~~C~--~C~h~f-H~~Ci~kWl~   48 (74)
T 2ct0_A           16 KICNICHSLLIQ---------GQSCE--TCGIRM-HLPCVAKYFQ   48 (74)
T ss_dssp             CBCSSSCCBCSS---------SEECS--SSCCEE-CHHHHHHHST
T ss_pred             CcCcchhhHccc---------CCccC--CCCchh-hHHHHHHHHH
Confidence            689999887653         33454  564443 8999999965


No 66 
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=63.32  E-value=9.2  Score=38.36  Aligned_cols=49  Identities=20%  Similarity=0.421  Sum_probs=30.5

Q ss_pred             ccccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHHhhcCC
Q 016837           46 ELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRTSS   99 (381)
Q Consensus        46 eWedatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa~~~~   99 (381)
                      +=....|+||+++=+..    -.--+|-|.---|+-. =|+.||.++-++..++
T Consensus       305 ee~~~ECaICys~~l~~----g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~s  353 (381)
T 3k1l_B          305 DNEELRCNICFAYRLDG----GEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDG  353 (381)
T ss_dssp             CCSCCSCSSSCCSSCTT----CCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSS
T ss_pred             ccCCccCcccceeecCC----CCCccccccCCccCCc-cchHHHHHHHHhCCCc
Confidence            44566899999986541    1223344443344444 4999999988876553


No 67 
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=62.19  E-value=2.5  Score=32.66  Aligned_cols=20  Identities=25%  Similarity=0.760  Sum_probs=16.6

Q ss_pred             ccccCccccC-CCcchhh--hhc
Q 016837           48 DEISCPICMD-HPHNAVL--LIC   67 (381)
Q Consensus        48 edatCPICME-~PHNAVL--LlC   67 (381)
                      |+++|+||++ ++..||.  |.|
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C   24 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTC   24 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTT
T ss_pred             CCCCCcCCCCCCCCCceEECCcC
Confidence            6899999996 5889997  665


No 68 
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.29  E-value=2.9  Score=32.51  Aligned_cols=36  Identities=22%  Similarity=0.482  Sum_probs=25.8

Q ss_pred             ccccCccccCCCcchhhhh-ccccCCCCcccccCCCCccchhHHHHHHhh
Q 016837           48 DEISCPICMDHPHNAVLLI-CSSHDKGCRSYICDTSYRHSNCLDRYKKLR   96 (381)
Q Consensus        48 edatCPICME~PHNAVLLl-CSSh~KGCRPYMCdTSyRHSNCLDQFkKa~   96 (381)
                      ++.+||||++...+.|.+. |            +-+|- -.|+.+|-+..
T Consensus         6 ~~~~CPI~~~~~~dPV~~~~c------------Gh~f~-r~cI~~~l~~~   42 (94)
T 2yu4_A            6 SGFTCPITKEEMKKPVKNKVC------------GHTYE-EDAIVRMIESR   42 (94)
T ss_dssp             SCCBCTTTCSBCSSEEEESSS------------CCEEE-HHHHHHHHHHH
T ss_pred             cEeECcCcCchhcCCEEcCCC------------CCeec-HHHHHHHHHHc
Confidence            5688999999999999873 4            33332 35777776654


No 69 
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.55  E-value=5.1  Score=31.22  Aligned_cols=36  Identities=31%  Similarity=0.762  Sum_probs=27.8

Q ss_pred             ccc--ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHH
Q 016837           45 KEL--DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLD   90 (381)
Q Consensus        45 keW--edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLD   90 (381)
                      ..|  .+-.|.||....+..-||+|-         .|+..| |-.||+
T Consensus        20 ~~w~C~~c~C~vC~~~~~~~~ll~CD---------~C~~~y-H~~Cl~   57 (77)
T 2e6s_A           20 PEKKCHSCSCRVCGGKHEPNMQLLCD---------ECNVAY-HIYCLN   57 (77)
T ss_dssp             SSSCCSSSSCSSSCCCCCSTTEEECS---------SSCCEE-ETTSSS
T ss_pred             CCeECCCCCCcCcCCcCCCCCEEEcC---------CCCccc-cccccC
Confidence            456  455899999887888999998         466666 888974


No 70 
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=45.46  E-value=8.3  Score=29.26  Aligned_cols=16  Identities=31%  Similarity=0.721  Sum_probs=13.8

Q ss_pred             ccCccccccccceEEc
Q 016837          170 LKCPMCRGAILGWEVV  185 (381)
Q Consensus       170 L~CPLCRG~VkGWtVV  185 (381)
                      ..||+||..|.+...+
T Consensus        50 ~~CP~Cr~~i~~~~~i   65 (79)
T 2yho_A           50 QSCPVCRSRVEHVQHV   65 (79)
T ss_dssp             SBCTTTCCBCCEEEEC
T ss_pred             CcCCCCCchhhCeEEE
Confidence            3899999999998755


No 71 
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=39.61  E-value=7.1  Score=34.80  Aligned_cols=36  Identities=8%  Similarity=0.121  Sum_probs=26.4

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHHhh
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLR   96 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa~   96 (381)
                      ++..||||++...+.|++-|            +.+|-. .|+.+|-+..
T Consensus       105 ~~f~CPI~~elm~DPV~~~~------------Ghtfer-~~I~~~l~~~  140 (179)
T 2f42_A          105 DYLCGKISFELMREPCITPS------------GITYDR-KDIEEHLQRV  140 (179)
T ss_dssp             GGGBCTTTCSBCSSEEECTT------------SCEEEH-HHHHHHHHHT
T ss_pred             HhhcccCccccCCCCeECCC------------CCEECH-HHHHHHHHhC
Confidence            67899999999999998854            444433 4677776653


No 72 
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=35.30  E-value=19  Score=26.28  Aligned_cols=27  Identities=26%  Similarity=0.640  Sum_probs=22.2

Q ss_pred             cCCCCcccCCcccc-cHHHHHHHHhhhC
Q 016837          195 KRRTCSRESCSFVG-NYQELRRHARRVH  221 (381)
Q Consensus       195 KkRSCs~E~CsF~G-tY~ELRKHaR~~H  221 (381)
                      +.-.|.-++|.|.| ...+|..|+|.+|
T Consensus        37 ~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A           37 EPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            35679999999754 4679999999998


No 73 
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=32.15  E-value=14  Score=28.49  Aligned_cols=10  Identities=40%  Similarity=1.016  Sum_probs=9.1

Q ss_pred             ccCccccccc
Q 016837          170 LKCPMCRGAI  179 (381)
Q Consensus       170 L~CPLCRG~V  179 (381)
                      |+||.|.|..
T Consensus        11 L~CP~ck~~L   20 (67)
T 2jny_A           11 LACPKDKGPL   20 (67)
T ss_dssp             CBCTTTCCBC
T ss_pred             hCCCCCCCcC
Confidence            9999999975


No 74 
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.74  E-value=33  Score=21.58  Aligned_cols=33  Identities=18%  Similarity=0.298  Sum_probs=16.6

Q ss_pred             ccCcccc-CCCcchhhhhccccCCCCcccccCCC
Q 016837           50 ISCPICM-DHPHNAVLLICSSHDKGCRSYICDTS   82 (381)
Q Consensus        50 atCPICM-E~PHNAVLLlCSSh~KGCRPYMCdTS   82 (381)
                      -.|++|- .+....-|..=--...|=+||.|.++
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2enh_A           13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCCC
T ss_pred             cCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4577764 34444444322222345577777653


No 75 
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.85  E-value=30  Score=24.19  Aligned_cols=54  Identities=20%  Similarity=0.416  Sum_probs=33.0

Q ss_pred             ccCccccccccceEEcchHHHhhc------ccCCCCcccCCcccc-cHHHHHHHHhhhCCCCCCCC
Q 016837          170 LKCPMCRGAILGWEVVEEARKYLN------LKRRTCSRESCSFVG-NYQELRRHARRVHPTTRPSD  228 (381)
Q Consensus       170 L~CPLCRG~VkGWtVVe~AR~yLN------~KkRSCs~E~CsF~G-tY~ELRKHaR~~HP~aRPse  228 (381)
                      ..|+.|--...-   ...-+.++.      .|+-.|  +.|...= +-..|++|++..|+..+|+.
T Consensus        16 ~~C~~C~k~f~~---~~~L~~H~~~~h~~~~~~~~C--~~C~~~f~~~~~L~~H~~~~H~~~~p~s   76 (77)
T 2ct1_A           16 YECYICHARFTQ---SGTMKMHILQKHTENVAKFHC--PHCDTVIARKSDLGVHLRKQHSYSGPSS   76 (77)
T ss_dssp             EECTTTCCEESC---HHHHHHHHHHHSSSSCSSEEC--SSSSCEESSHHHHHHHHHHTSCCSCCCC
T ss_pred             eECCCcCchhCC---HHHHHHHHHHhcCCCCCccCC--CCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            778888543322   122223322      134444  4476543 56789999999999999973


No 76 
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.09  E-value=48  Score=25.13  Aligned_cols=65  Identities=17%  Similarity=0.352  Sum_probs=45.7

Q ss_pred             cccCccccccccceEEc-----------chHHHhhccc-------CCCCcccCCccc--ccHHHHHHHHhhhCCCCCCCC
Q 016837          169 SLKCPMCRGAILGWEVV-----------EEARKYLNLK-------RRTCSRESCSFV--GNYQELRRHARRVHPTTRPSD  228 (381)
Q Consensus       169 ~L~CPLCRG~VkGWtVV-----------e~AR~yLN~K-------kRSCs~E~CsF~--GtY~ELRKHaR~~HP~aRPse  228 (381)
                      .+.||.|-..+++-..+           +-.++|+..|       .-.|+..+|...  =+..++++.            
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~l------------   72 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECM------------   72 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHH------------
T ss_pred             CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHH------------
Confidence            47899999888764332           2457787764       348999999988  677777765            


Q ss_pred             CCchHHHHHHHHhhhhh
Q 016837          229 IDPSRERAWRRLEHQRE  245 (381)
Q Consensus       229 VDP~Rqr~W~rLE~erE  245 (381)
                      +++....+|+++--+++
T Consensus        73 l~~~~~~ky~~~~~~~~   89 (94)
T 1wim_A           73 VAAEIMQRYKKLQFERS   89 (94)
T ss_dssp             SCHHHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            35677778887655543


No 77 
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=29.58  E-value=60  Score=25.94  Aligned_cols=45  Identities=22%  Similarity=0.547  Sum_probs=26.6

Q ss_pred             hHHHhhcccCCCCcccCCccccc----------HHHHHHHHhhhCCCCCCCCCCchHHHHHH---HHhhh
Q 016837          187 EARKYLNLKRRTCSRESCSFVGN----------YQELRRHARRVHPTTRPSDIDPSRERAWR---RLEHQ  243 (381)
Q Consensus       187 ~AR~yLN~KkRSCs~E~CsF~Gt----------Y~ELRKHaR~~HP~aRPseVDP~Rqr~W~---rLE~e  243 (381)
                      .++-...+...-|.. +|-|-||          |+++.+|.|..           ..+.+|.   +|++|
T Consensus         7 ~~~~q~pe~~~lC~n-gCGFfGnpaT~nlCSkCyrd~~~k~~q~-----------q~~~~~~~~~~~~~~   64 (74)
T 2c7n_A            7 RRGIHVDQSDLLCKK-GCGYYGNPAWQGFCSKCWREEYHKARQK-----------QIQEDWELAERLQRE   64 (74)
T ss_dssp             -----------CCTT-CSSSCCCGGGTTCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred             hccCCCCCcchhHHh-CCCCCCChhhcCccHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            334444556677865 9999998          89987777776           5789994   55555


No 78 
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.51  E-value=17  Score=28.04  Aligned_cols=11  Identities=45%  Similarity=1.422  Sum_probs=9.7

Q ss_pred             ccCcccccccc
Q 016837          170 LKCPMCRGAIL  180 (381)
Q Consensus       170 L~CPLCRG~Vk  180 (381)
                      |+||.|.|...
T Consensus         9 L~CP~ck~~L~   19 (69)
T 2pk7_A            9 LACPICKGPLK   19 (69)
T ss_dssp             CCCTTTCCCCE
T ss_pred             eeCCCCCCcCe
Confidence            99999999864


No 79 
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.42  E-value=18  Score=27.85  Aligned_cols=11  Identities=36%  Similarity=0.945  Sum_probs=9.5

Q ss_pred             ccCcccccccc
Q 016837          170 LKCPMCRGAIL  180 (381)
Q Consensus       170 L~CPLCRG~Vk  180 (381)
                      |+||.|.|...
T Consensus         9 L~CP~ck~~L~   19 (68)
T 2jr6_A            9 LVCPVTKGRLE   19 (68)
T ss_dssp             CBCSSSCCBCE
T ss_pred             eECCCCCCcCe
Confidence            99999999753


No 80 
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.38  E-value=17  Score=27.89  Aligned_cols=11  Identities=45%  Similarity=1.509  Sum_probs=9.5

Q ss_pred             ccCcccccccc
Q 016837          170 LKCPMCRGAIL  180 (381)
Q Consensus       170 L~CPLCRG~Vk  180 (381)
                      |+||.|.|...
T Consensus         9 L~CP~ck~~L~   19 (68)
T 2hf1_A            9 LVCPLCKGPLV   19 (68)
T ss_dssp             CBCTTTCCBCE
T ss_pred             eECCCCCCcCe
Confidence            99999999753


No 81 
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.89  E-value=18  Score=27.99  Aligned_cols=11  Identities=45%  Similarity=1.307  Sum_probs=9.5

Q ss_pred             ccCcccccccc
Q 016837          170 LKCPMCRGAIL  180 (381)
Q Consensus       170 L~CPLCRG~Vk  180 (381)
                      |+||.|.|...
T Consensus         9 L~CP~ck~~L~   19 (70)
T 2js4_A            9 LVCPVCKGRLE   19 (70)
T ss_dssp             CBCTTTCCBEE
T ss_pred             eECCCCCCcCE
Confidence            99999999753


No 82 
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.64  E-value=29  Score=21.83  Aligned_cols=37  Identities=30%  Similarity=0.509  Sum_probs=23.7

Q ss_pred             HhhcccCCCCcccCCccc-ccHHHHHHHHhhhCCCCCCC
Q 016837          190 KYLNLKRRTCSRESCSFV-GNYQELRRHARRVHPTTRPS  227 (381)
Q Consensus       190 ~yLN~KkRSCs~E~CsF~-GtY~ELRKHaR~~HP~aRPs  227 (381)
                      .+.+.|+-.|....|... ..-..|++|.+. |...+|-
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~   43 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVKPS   43 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTT-SCCCCSC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHH-hCCCCCC
Confidence            344556666664456543 345789999876 8777774


No 83 
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=27.09  E-value=13  Score=25.86  Aligned_cols=31  Identities=26%  Similarity=0.836  Sum_probs=23.8

Q ss_pred             ccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHH
Q 016837           50 ISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLD   90 (381)
Q Consensus        50 atCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLD   90 (381)
                      |.|.||-..-...-||+|-         .|+..| |-.||+
T Consensus         1 a~C~vC~~~~~~~~ll~Cd---------~C~~~~-H~~Cl~   31 (51)
T 1f62_A            1 ARCKVCRKKGEDDKLILCD---------ECNKAF-HLFCLR   31 (51)
T ss_dssp             CCCTTTCCSSCCSCCEECT---------TTCCEE-CHHHHC
T ss_pred             CCCCCCCCCCCCCCEEECC---------CCChhh-CcccCC
Confidence            5799999877677899997         366655 888875


No 84 
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=24.99  E-value=56  Score=25.57  Aligned_cols=8  Identities=38%  Similarity=0.422  Sum_probs=4.5

Q ss_pred             ccccCccc
Q 016837          168 LSLKCPMC  175 (381)
Q Consensus       168 ~~L~CPLC  175 (381)
                      ....|+.|
T Consensus        24 ~~~~C~~C   31 (155)
T 2rpc_A           24 LSRPKKSC   31 (155)
T ss_dssp             CSSSCCCC
T ss_pred             cccccccC
Confidence            44556666


No 85 
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=24.91  E-value=22  Score=26.26  Aligned_cols=10  Identities=40%  Similarity=1.255  Sum_probs=9.0

Q ss_pred             ccCccccccc
Q 016837          170 LKCPMCRGAI  179 (381)
Q Consensus       170 L~CPLCRG~V  179 (381)
                      |+||.|.|..
T Consensus        11 L~CP~c~~~L   20 (56)
T 2kpi_A           11 LACPACHAPL   20 (56)
T ss_dssp             CCCSSSCSCE
T ss_pred             eeCCCCCCcc
Confidence            9999999974


No 86 
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.89  E-value=46  Score=20.80  Aligned_cols=32  Identities=16%  Similarity=0.176  Sum_probs=13.7

Q ss_pred             ccCccccC-CCcchhhhhccccCCCCcccccCC
Q 016837           50 ISCPICMD-HPHNAVLLICSSHDKGCRSYICDT   81 (381)
Q Consensus        50 atCPICME-~PHNAVLLlCSSh~KGCRPYMCdT   81 (381)
                      -.|++|-. +....-|..=-.-..|=+||.|..
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A           13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             TCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             eECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            34666633 333333322212223446666654


No 87 
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.73  E-value=15  Score=35.04  Aligned_cols=29  Identities=17%  Similarity=0.416  Sum_probs=22.9

Q ss_pred             cchhhHHhhcccccccCccccCCCcchhhh
Q 016837           36 TDSDIHALHKELDEISCPICMDHPHNAVLL   65 (381)
Q Consensus        36 ~d~~~~al~keWedatCPICME~PHNAVLL   65 (381)
                      .|.||. .....++.+||||++...+.|.+
T Consensus       169 dDDDI~-v~~~~~el~CPIcl~~f~DPVts  197 (267)
T 3htk_C          169 DEDDLQ-IEGGKIELTCPITCKPYEAPLIS  197 (267)
T ss_dssp             CSSCCC-CCSSBCCSBCTTTSSBCSSEEEE
T ss_pred             CCccce-ecCCceeeECcCccCcccCCeee
Confidence            344544 55678999999999999999964


No 88 
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.70  E-value=52  Score=22.87  Aligned_cols=58  Identities=19%  Similarity=0.253  Sum_probs=33.6

Q ss_pred             ccCccccccccceE-EcchHHHhhc---ccCCCCcccCCccc-ccHHHHHHHHhhhCCCCCCCCC
Q 016837          170 LKCPMCRGAILGWE-VVEEARKYLN---LKRRTCSRESCSFV-GNYQELRRHARRVHPTTRPSDI  229 (381)
Q Consensus       170 L~CPLCRG~VkGWt-VVe~AR~yLN---~KkRSCs~E~CsF~-GtY~ELRKHaR~~HP~aRPseV  229 (381)
                      ..|+.|--...-.. +..--+.+.+   .|+-.|..  |... -+-..|++|.+..|+..+|..-
T Consensus         8 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTT--TCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             eECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCC--CCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            56777754332211 1122233333   44445543  5543 3457899999999999988753


No 89 
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=22.23  E-value=25  Score=28.94  Aligned_cols=12  Identities=25%  Similarity=0.160  Sum_probs=10.4

Q ss_pred             ccCccccccccc
Q 016837          170 LKCPMCRGAILG  181 (381)
Q Consensus       170 L~CPLCRG~VkG  181 (381)
                      |+||.|+|...-
T Consensus         9 LaCP~cK~pL~l   20 (97)
T 2k5r_A            9 LCSPDTRQPLSL   20 (97)
T ss_dssp             CCCCTTSSCCEE
T ss_pred             eECCCCCCcccc
Confidence            999999997764


No 90 
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.99  E-value=34  Score=25.34  Aligned_cols=56  Identities=23%  Similarity=0.366  Sum_probs=34.7

Q ss_pred             ccCccccccccceEEc-chHHHhhcccCCCCcccCCccc-ccHHHHHHHHhhhCCCCCCCC
Q 016837          170 LKCPMCRGAILGWEVV-EEARKYLNLKRRTCSRESCSFV-GNYQELRRHARRVHPTTRPSD  228 (381)
Q Consensus       170 L~CPLCRG~VkGWtVV-e~AR~yLN~KkRSCs~E~CsF~-GtY~ELRKHaR~~HP~aRPse  228 (381)
                      ..|+.|--...-..-. .-.+ +...|+-.|..  |... -+...|++|++..|...+|-.
T Consensus        43 ~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~  100 (107)
T 1wjp_A           43 AVCPYCSLRFFSPELKQEHES-KCEYKKLTCLE--CMRTFKSSFSIWRHQVEVHNQNNMAP  100 (107)
T ss_dssp             BCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGG--GTEECSSHHHHHHHHHHTSCCCCCCC
T ss_pred             ccCCCCCCccCCHHHHHHHHH-cCCCCCccCcc--ccchhCCHHHHHHHHHHHcCCCCCCC
Confidence            6899997655432211 1112 44556656654  6654 356789999999998877753


No 91 
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=21.04  E-value=26  Score=26.72  Aligned_cols=36  Identities=31%  Similarity=0.816  Sum_probs=27.8

Q ss_pred             cccccccCccccCC--CcchhhhhccccCCCCcccccCCCCccchhHH
Q 016837           45 KELDEISCPICMDH--PHNAVLLICSSHDKGCRSYICDTSYRHSNCLD   90 (381)
Q Consensus        45 keWedatCPICME~--PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLD   90 (381)
                      ...++..|.||.+.  ....-||+|-         .|+..| |-.||+
T Consensus        12 ~~~~~~~C~vC~~~~s~~~~~ll~CD---------~C~~~~-H~~Cl~   49 (71)
T 2ku3_A           12 LIDEDAVCSICMDGESQNSNVILFCD---------MCNLAV-HQECYG   49 (71)
T ss_dssp             CCCSSCSCSSSCCCCCCSSSCEEECS---------SSCCEE-EHHHHT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECC---------CCCCcc-ccccCC
Confidence            45688999999865  4667889997         477766 888875


No 92 
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.89  E-value=41  Score=20.93  Aligned_cols=10  Identities=10%  Similarity=-0.014  Sum_probs=6.0

Q ss_pred             CCCcccccCC
Q 016837           72 KGCRSYICDT   81 (381)
Q Consensus        72 KGCRPYMCdT   81 (381)
                      .|=+||.|.+
T Consensus        36 ~~~k~~~C~~   45 (46)
T 2eq3_A           36 TGKKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCC
T ss_pred             CCCCCCCCCC
Confidence            3456777765


Done!