Query 016838
Match_columns 381
No_of_seqs 142 out of 829
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 03:16:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 5.3E-24 1.1E-28 168.5 9.2 78 289-379 1-79 (79)
2 cd02861 E_set_proteins_like E 99.8 1.5E-18 3.1E-23 137.0 8.9 77 290-379 2-82 (82)
3 KOG1616 Protein involved in Sn 99.6 5.8E-15 1.2E-19 142.7 7.8 83 289-381 79-162 (289)
4 cd02858 Esterase_N_term Estera 99.3 2.5E-11 5.4E-16 97.2 9.2 76 290-378 6-84 (85)
5 cd02688 E_set E or "early" set 98.9 6.5E-09 1.4E-13 78.3 8.0 70 290-371 4-75 (83)
6 cd02854 Glycogen_branching_enz 98.5 4.2E-07 9E-12 75.6 7.4 68 290-369 5-86 (99)
7 PF02922 CBM_48: Carbohydrate- 98.4 2.3E-07 5.1E-12 72.2 4.3 59 290-359 11-74 (85)
8 cd02860 Pullulanase_N_term Pul 98.0 2.7E-05 5.9E-10 63.3 7.7 68 291-372 9-88 (100)
9 cd05808 CBM20_alpha_amylase Al 97.8 0.00013 2.7E-09 58.4 8.1 63 291-365 2-78 (95)
10 cd02855 Glycogen_branching_enz 97.7 0.00021 4.6E-09 57.3 8.6 77 291-378 22-105 (106)
11 PF00686 CBM_20: Starch bindin 97.6 0.00024 5.1E-09 57.6 6.6 58 290-355 2-68 (96)
12 COG0296 GlgB 1,4-alpha-glucan 97.5 0.00014 3E-09 78.0 6.5 68 288-366 34-108 (628)
13 cd02856 Glycogen_debranching_e 97.4 0.00054 1.2E-08 56.3 7.3 65 291-369 10-91 (103)
14 PRK12313 glycogen branching en 97.4 0.00045 9.7E-09 73.1 8.6 68 290-369 38-112 (633)
15 PRK12568 glycogen branching en 97.4 0.00056 1.2E-08 74.6 9.0 69 288-369 136-212 (730)
16 cd05814 CBM20_Prei4 Prei4, N-t 97.4 0.0013 2.8E-08 55.8 9.2 55 291-355 2-66 (120)
17 cd05818 CBM20_water_dikinase P 97.3 0.0021 4.6E-08 52.4 9.1 68 290-370 2-81 (92)
18 cd05811 CBM20_glucoamylase Glu 97.2 0.0033 7.1E-08 51.7 9.6 74 289-370 6-93 (106)
19 PRK14706 glycogen branching en 97.2 0.0011 2.4E-08 71.1 8.3 68 290-370 38-113 (639)
20 cd05809 CBM20_beta_amylase Bet 97.2 0.0027 5.8E-08 52.2 8.6 72 290-370 3-89 (99)
21 cd05820 CBM20_novamyl Novamyl 97.2 0.0039 8.4E-08 51.9 9.5 69 290-370 3-90 (103)
22 cd02853 MTHase_N_term Maltooli 97.1 0.0023 5.1E-08 50.8 7.6 73 290-378 8-82 (85)
23 PRK14705 glycogen branching en 97.1 0.0015 3.2E-08 74.8 8.8 67 288-366 636-710 (1224)
24 cd02852 Isoamylase_N_term Isoa 97.1 0.0017 3.7E-08 54.4 6.8 59 290-359 7-72 (119)
25 TIGR02402 trehalose_TreZ malto 96.9 0.0019 4.1E-08 67.7 7.2 70 292-378 1-73 (542)
26 PLN02447 1,4-alpha-glucan-bran 96.9 0.0018 3.8E-08 71.1 6.8 64 291-367 115-192 (758)
27 PRK05402 glycogen branching en 96.9 0.0033 7.2E-08 67.9 8.8 69 290-369 131-206 (726)
28 cd05816 CBM20_DPE2_repeat2 Dis 96.9 0.013 2.9E-07 48.1 10.0 67 292-370 2-85 (99)
29 cd05467 CBM20 The family 20 ca 96.8 0.015 3.3E-07 46.1 9.7 46 299-355 12-65 (96)
30 cd05817 CBM20_DSP Dual-specifi 96.8 0.0053 1.2E-07 50.6 7.0 45 299-355 12-62 (100)
31 cd05807 CBM20_CGTase CGTase, C 96.7 0.015 3.2E-07 47.9 9.3 74 289-370 2-90 (101)
32 cd05813 CBM20_genethonin_1 Gen 96.7 0.0071 1.5E-07 49.0 7.1 53 291-355 2-62 (95)
33 TIGR01515 branching_enzym alph 96.5 0.0081 1.8E-07 63.8 8.2 68 290-369 28-103 (613)
34 PRK05402 glycogen branching en 96.3 0.0079 1.7E-07 65.1 6.6 63 291-366 29-96 (726)
35 cd05810 CBM20_alpha_MTH Glucan 96.0 0.039 8.6E-07 45.6 8.1 67 291-369 2-86 (97)
36 PLN02316 synthase/transferase 95.7 0.16 3.4E-06 58.0 13.4 61 290-357 329-398 (1036)
37 cd05815 CBM20_DPE2_repeat1 Dis 95.4 0.052 1.1E-06 44.5 6.5 65 292-365 2-81 (101)
38 TIGR02104 pulA_typeI pullulana 94.9 0.1 2.2E-06 55.5 8.5 65 291-369 20-95 (605)
39 PF03423 CBM_25: Carbohydrate 94.0 0.14 3.1E-06 41.8 5.7 63 291-361 3-76 (87)
40 cd05806 CBM20_laforin Laforin 93.8 0.54 1.2E-05 40.7 9.2 55 296-355 11-74 (112)
41 PLN02316 synthase/transferase 92.8 0.5 1.1E-05 54.1 9.4 56 289-355 490-557 (1036)
42 TIGR02100 glgX_debranch glycog 92.8 0.3 6.6E-06 53.2 7.4 55 291-359 15-75 (688)
43 PLN02950 4-alpha-glucanotransf 92.5 0.82 1.8E-05 51.7 10.4 70 289-370 152-237 (909)
44 PF11806 DUF3327: Domain of un 92.4 0.81 1.8E-05 39.7 8.2 79 290-379 2-111 (122)
45 PRK10439 enterobactin/ferric e 92.1 0.66 1.4E-05 47.4 8.5 81 287-380 36-161 (411)
46 PLN02960 alpha-amylase 92.0 0.14 3.1E-06 57.5 3.8 59 291-356 129-198 (897)
47 TIGR02102 pullulan_Gpos pullul 90.6 0.64 1.4E-05 53.6 7.2 66 291-368 328-408 (1111)
48 PLN02950 4-alpha-glucanotransf 90.4 1.6 3.4E-05 49.5 10.0 67 290-365 9-90 (909)
49 TIGR02103 pullul_strch alpha-1 90.0 1 2.2E-05 51.0 8.0 68 290-369 135-216 (898)
50 PRK03705 glycogen debranching 89.9 0.71 1.5E-05 50.3 6.6 65 291-369 20-101 (658)
51 cd02857 CD_pullulan_degrading_ 85.8 3.7 7.9E-05 33.3 6.9 58 290-355 16-79 (116)
52 PRK14510 putative bifunctional 82.0 4.8 0.0001 47.0 8.2 56 290-359 23-84 (1221)
53 PLN02877 alpha-amylase/limit d 73.4 9.9 0.00021 43.8 7.4 65 290-369 222-303 (970)
54 PLN03244 alpha-amylase; Provis 69.3 3.6 7.8E-05 46.6 2.8 60 291-356 132-201 (872)
55 PF02903 Alpha-amylase_N: Alph 65.8 14 0.00031 31.1 5.1 67 291-365 22-100 (120)
56 PF00392 GntR: Bacterial regul 64.7 7.5 0.00016 29.3 3.0 44 62-107 3-47 (64)
57 KOG0470 1,4-alpha-glucan branc 61.9 9.1 0.0002 42.9 4.1 42 292-344 115-158 (757)
58 PF01357 Pollen_allerg_1: Poll 61.3 17 0.00036 29.5 4.6 58 290-362 14-77 (82)
59 COG1725 Predicted transcriptio 60.5 23 0.00049 31.6 5.6 64 62-127 14-78 (125)
60 KOG2264 Exostosin EXT1L [Signa 59.8 10 0.00023 41.9 4.0 63 215-277 98-167 (907)
61 smart00345 HTH_GNTR helix_turn 59.0 12 0.00025 26.5 2.9 30 64-93 1-31 (60)
62 PF10281 Ish1: Putative stress 56.4 20 0.00043 25.2 3.7 30 66-102 7-36 (38)
63 PF03370 CBM_21: Putative phos 56.0 21 0.00046 30.3 4.5 72 291-362 22-105 (113)
64 COG3794 PetE Plastocyanin [Ene 54.4 37 0.0008 30.4 5.9 52 287-352 59-111 (128)
65 TIGR03503 conserved hypothetic 49.9 35 0.00076 35.6 5.8 25 334-358 169-195 (374)
66 TIGR02404 trehalos_R_Bsub treh 44.0 30 0.00065 31.8 3.9 60 62-126 3-66 (233)
67 TIGR02325 C_P_lyase_phnF phosp 43.3 31 0.00068 31.5 3.9 61 62-127 11-75 (238)
68 TIGR03337 phnR transcriptional 40.6 56 0.0012 29.7 5.1 31 62-92 4-35 (231)
69 PRK00446 cyaY frataxin-like pr 39.9 60 0.0013 27.9 4.8 28 334-365 56-83 (105)
70 TIGR02018 his_ut_repres histid 39.5 40 0.00086 31.1 3.9 61 62-127 4-68 (230)
71 PRK14999 histidine utilization 39.4 38 0.00083 31.5 3.9 31 61-91 14-45 (241)
72 PF08022 FAD_binding_8: FAD-bi 38.2 11 0.00023 31.3 0.0 14 19-38 47-60 (105)
73 PRK12423 LexA repressor; Provi 38.2 37 0.0008 31.3 3.5 27 61-91 8-34 (202)
74 cd01278 aprataxin_related apra 37.8 33 0.00071 27.7 2.8 34 77-111 42-75 (104)
75 KOG0963 Transcription factor/C 37.3 49 0.0011 36.7 4.8 66 222-287 276-341 (629)
76 KOG3990 Uncharacterized conser 37.3 17 0.00038 36.5 1.3 31 222-252 230-260 (305)
77 PF01726 LexA_DNA_bind: LexA D 33.0 51 0.0011 25.9 3.1 26 62-91 9-34 (65)
78 KOG1263 Multicopper oxidases [ 32.7 50 0.0011 36.0 3.9 31 334-364 96-130 (563)
79 PF02970 TBCA: Tubulin binding 32.6 37 0.00081 28.2 2.4 53 223-275 24-78 (90)
80 TIGR02375 pseudoazurin pseudoa 32.6 1.4E+02 0.0031 25.9 6.1 16 290-305 23-38 (116)
81 PRK09764 DNA-binding transcrip 32.2 58 0.0013 30.3 3.9 61 62-127 8-72 (240)
82 PRK10785 maltodextrin glucosid 31.3 1.7E+02 0.0036 31.7 7.6 51 300-358 33-87 (598)
83 cd07377 WHTH_GntR Winged helix 31.1 87 0.0019 22.4 3.9 31 62-92 4-35 (66)
84 PF13473 Cupredoxin_1: Cupredo 30.8 1.1E+02 0.0025 24.9 4.9 16 336-351 74-90 (104)
85 KOG0272 U4/U6 small nuclear ri 29.9 77 0.0017 33.9 4.6 55 257-311 138-197 (459)
86 PRK11402 DNA-binding transcrip 29.6 68 0.0015 29.7 3.8 30 62-91 12-42 (241)
87 PRK04984 fatty acid metabolism 29.2 72 0.0016 29.3 3.9 30 62-91 10-40 (239)
88 PF15513 DUF4651: Domain of un 27.9 43 0.00092 26.9 1.9 16 61-76 4-19 (62)
89 PF05524 PEP-utilisers_N: PEP- 27.8 63 0.0014 27.2 3.0 57 221-284 32-88 (123)
90 PF11896 DUF3416: Domain of un 27.7 60 0.0013 30.5 3.1 32 310-354 55-87 (187)
91 smart00312 PX PhoX homologous 27.4 1.6E+02 0.0036 23.2 5.2 85 25-119 9-95 (105)
92 PF07664 FeoB_C: Ferrous iron 26.8 43 0.00093 25.1 1.6 16 75-90 34-49 (54)
93 PF08317 Spc7: Spc7 kinetochor 26.5 2.4E+02 0.0052 28.1 7.2 62 209-274 205-269 (325)
94 PF15175 SPATA24: Spermatogene 26.0 1.2E+02 0.0025 28.4 4.5 45 225-273 29-77 (153)
95 PRK03837 transcriptional regul 26.0 91 0.002 28.5 3.9 32 60-91 14-46 (241)
96 PF00730 HhH-GPD: HhH-GPD supe 25.5 60 0.0013 26.2 2.4 35 67-106 17-51 (108)
97 KOG0045 Cytosolic Ca2+-depende 25.4 62 0.0013 35.6 3.2 27 344-370 114-143 (612)
98 cd06093 PX_domain The Phox Hom 25.3 2.5E+02 0.0054 21.7 5.8 82 25-118 14-95 (106)
99 PRK10079 phosphonate metabolis 25.3 86 0.0019 29.1 3.7 61 62-128 15-79 (241)
100 PRK09464 pdhR transcriptional 25.0 97 0.0021 28.8 4.0 32 60-91 11-43 (254)
101 PF14347 DUF4399: Domain of un 25.0 1.2E+02 0.0026 25.3 4.1 33 334-367 49-81 (87)
102 cd06880 PX_SNX22 The phosphoin 24.4 2.5E+02 0.0055 23.7 6.0 73 25-116 16-90 (110)
103 PF07495 Y_Y_Y: Y_Y_Y domain; 24.4 76 0.0016 23.3 2.6 25 339-363 30-58 (66)
104 PRK10421 DNA-binding transcrip 24.1 98 0.0021 28.9 3.9 30 62-91 5-35 (253)
105 PF04985 Phage_tube: Phage tai 24.1 2.9E+02 0.0062 24.7 6.6 63 290-369 78-151 (167)
106 COG2188 PhnF Transcriptional r 22.1 1.2E+02 0.0025 28.7 3.9 61 62-127 10-74 (236)
107 PF11797 DUF3324: Protein of u 21.5 4.3E+02 0.0093 23.2 7.1 23 343-365 102-127 (140)
108 PF07862 Nif11: Nitrogen fixat 21.5 64 0.0014 23.4 1.6 17 92-108 28-44 (49)
109 PF06252 DUF1018: Protein of u 20.9 60 0.0013 27.7 1.6 27 80-106 14-40 (119)
110 PF13620 CarboxypepD_reg: Carb 20.3 1.5E+02 0.0033 22.4 3.6 26 332-358 34-59 (82)
111 smart00230 CysPc Calpain-like 20.0 1.1E+02 0.0024 30.3 3.5 26 344-369 98-126 (318)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.90 E-value=5.3e-24 Score=168.54 Aligned_cols=78 Identities=35% Similarity=0.699 Sum_probs=71.6
Q ss_pred cEEEEEEeecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCee
Q 016838 289 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 368 (381)
Q Consensus 289 Lk~VTF~W~g~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~PtV 368 (381)
+.+|+|+|.++|++|+|+|+|++|++.++|.+. ..+ |++++.||||.|+|||+|||+|++||+.|++
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~ 67 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE 67 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence 368999999999999999999999988899985 334 9999999999999999999999999999999
Q ss_pred cc-CCccceEEE
Q 016838 369 TK-GGICNNILR 379 (381)
Q Consensus 369 tD-~GnvNNVL~ 379 (381)
.+ .|+.||+|.
T Consensus 68 ~d~~G~~NN~i~ 79 (79)
T cd02859 68 TDDEGNVNNVID 79 (79)
T ss_pred CCCCCcEeeeEC
Confidence 87 799999984
No 2
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.77 E-value=1.5e-18 Score=137.04 Aligned_cols=77 Identities=39% Similarity=0.689 Sum_probs=67.9
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeee-cCCCCCe
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES 367 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~-~DP~~Pt 367 (381)
.+|+|+|.++ ++.|+|+|+|++|+ .++|.++ .+|.|++++.|+||.|+|||+|||.|. +||.++.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~ 68 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA 68 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence 4799999997 69999999999998 4788874 569999999999999999999999999 9999997
Q ss_pred ec-c-CCccceEEE
Q 016838 368 VT-K-GGICNNILR 379 (381)
Q Consensus 368 Vt-D-~GnvNNVL~ 379 (381)
.. + .|+.|++|.
T Consensus 69 ~~~~~~g~~n~v~~ 82 (82)
T cd02861 69 YVDDGFGGKNAVFV 82 (82)
T ss_pred eecCCCCccceEcC
Confidence 66 4 488898873
No 3
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.56 E-value=5.8e-15 Score=142.69 Aligned_cols=83 Identities=39% Similarity=0.567 Sum_probs=75.2
Q ss_pred cEEEEEEeecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCee
Q 016838 289 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 368 (381)
Q Consensus 289 Lk~VTF~W~g~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~PtV 368 (381)
..+|+|+|..+++.|+|.|+|++|...++|.+.- +..|.|++++.|++|.|+|||+|||+|.+|++.|++
T Consensus 79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta 148 (289)
T KOG1616|consen 79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA 148 (289)
T ss_pred CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence 3799999999999999999999999989988741 244559999999999999999999999999999999
Q ss_pred cc-CCccceEEEeC
Q 016838 369 TK-GGICNNILRVI 381 (381)
Q Consensus 369 tD-~GnvNNVL~V~ 381 (381)
.+ .|+.||+|.|.
T Consensus 149 ~d~~Gn~~N~i~v~ 162 (289)
T KOG1616|consen 149 EDSLGNLNNILEVQ 162 (289)
T ss_pred ccccCCcccceEec
Confidence 98 79999999984
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.27 E-value=2.5e-11 Score=97.20 Aligned_cols=76 Identities=25% Similarity=0.393 Sum_probs=63.9
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEEcCeeecCCCCCe
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRES 367 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL-~LpPG~YEYKFIVDGeW~~DP~~Pt 367 (381)
..|+|+..++ |++|.|.|+|++|.. .+|+++ ++|.|++++ .|.+|.|.|+|+|||.|+.||.++.
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~ 72 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPT 72 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCCcc-EeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCc
Confidence 5789988776 999999999998864 789875 689999998 4889999999999999999999998
Q ss_pred ecc-CCccceEE
Q 016838 368 VTK-GGICNNIL 378 (381)
Q Consensus 368 VtD-~GnvNNVL 378 (381)
... .+..-|.+
T Consensus 73 ~~~~~~~~~~~~ 84 (85)
T cd02858 73 TKPGRQVDTSGV 84 (85)
T ss_pred eeecccccceee
Confidence 884 45554443
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.90 E-value=6.5e-09 Score=78.28 Aligned_cols=70 Identities=30% Similarity=0.478 Sum_probs=60.2
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCC-eeEEEEEEEcCeeecCCCCCe
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES 367 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpP-G~YEYKFIVDGeW~~DP~~Pt 367 (381)
..|+|++.++ ++.|.|.+.|++|...++|.+. ..|.|.+.+.+.. |.|.|+|+|||.|.+++.++.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~ 71 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK 71 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence 4789988886 8999999999997667889874 5699999999887 999999999999999998866
Q ss_pred eccC
Q 016838 368 VTKG 371 (381)
Q Consensus 368 VtD~ 371 (381)
..+.
T Consensus 72 ~~~~ 75 (83)
T cd02688 72 ADEG 75 (83)
T ss_pred hhcC
Confidence 6653
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.49 E-value=4.2e-07 Score=75.62 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=52.1
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEe--------CCe-eEEEEEEE-cC
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG 357 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~L--------pPG-~YEYKFIV-DG 357 (381)
..++|+..+| |+.|+|+|+||+|+.. .+|.+. .+|+|++++.. +.| .|.|.+.. ||
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 4688977665 9999999999999864 679874 68999999864 455 56666666 78
Q ss_pred ee--ecCCCCCeec
Q 016838 358 QW--KVDPQRESVT 369 (381)
Q Consensus 358 eW--~~DP~~PtVt 369 (381)
+| +.||-...+.
T Consensus 73 ~~~~~~DPyA~~~~ 86 (99)
T cd02854 73 EWIDRIPAWIKYVT 86 (99)
T ss_pred CEEEEcCcceeEEE
Confidence 76 5688777665
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.43 E-value=2.3e-07 Score=72.18 Aligned_cols=59 Identities=27% Similarity=0.435 Sum_probs=46.7
Q ss_pred EEEEEEeecC-CceEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCcEEEEEE--eCCeeEEEEEEEcCee
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQW 359 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNn-W~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~--LpPG~YEYKFIVDGeW 359 (381)
..++|+..++ |++|.|.+.|++ |... ++|.+. ...|+|++++. +++|.+.|+|.|||..
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 5789977775 999999999999 8654 688831 37899999998 8889888899988653
No 8
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.99 E-value=2.7e-05 Score=63.31 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=52.9
Q ss_pred EEEEEeecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCe-----
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ----- 358 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~-----~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGe----- 358 (381)
.++|+..++ |++|.|.. |++|. ..++|.+. ..|+|++.+. +.+|.+ |+|.|+|.
T Consensus 9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~ 74 (100)
T cd02860 9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG------------ENGVWSVTLDGDLEGYY-YLYEVKVYKGETN 74 (100)
T ss_pred CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC------------CCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence 578977666 99999988 88886 34678763 7899999986 566665 99999876
Q ss_pred eecCCCCCeeccCC
Q 016838 359 WKVDPQRESVTKGG 372 (381)
Q Consensus 359 W~~DP~~PtVtD~G 372 (381)
...||-...+..+|
T Consensus 75 ~~~DPyA~~~~~~~ 88 (100)
T cd02860 75 EVVDPYAKALSANG 88 (100)
T ss_pred EEcCcccEeEeeCC
Confidence 78899888777543
No 9
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.78 E-value=0.00013 Score=58.39 Aligned_cols=63 Identities=27% Similarity=0.556 Sum_probs=47.2
Q ss_pred EEEEEeec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC-
Q 016838 291 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG- 357 (381)
Q Consensus 291 ~VTF~W~g---~AkeVeVaGS---FNnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DG- 357 (381)
+|+|.... .++.|+|+|+ +.+|++. ++|... ..+.|++++.||+| .++|||++ +|
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~ 69 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT 69 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence 46666543 4899999995 7899864 577652 56889999999987 79999997 24
Q ss_pred -eeecCCCC
Q 016838 358 -QWKVDPQR 365 (381)
Q Consensus 358 -eW~~DP~~ 365 (381)
.|...++.
T Consensus 70 ~~WE~~~nr 78 (95)
T cd05808 70 VTWESGPNR 78 (95)
T ss_pred EEEecCCCE
Confidence 47666643
No 10
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.73 E-value=0.00021 Score=57.33 Aligned_cols=77 Identities=26% Similarity=0.357 Sum_probs=50.9
Q ss_pred EEEEEeecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCee-EEEEEEEc-Ce--eecCC
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGT-YEIKFIVD-GQ--WKVDP 363 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~~-~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~-YEYKFIVD-Ge--W~~DP 363 (381)
.++|+...+ |+.|.|.|+|++|.. ..+|.+. ...|.|.+.+. +++|. |.|++..+ |. ...||
T Consensus 22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP 90 (106)
T cd02855 22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP 90 (106)
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence 478866665 999999999999964 3578764 24899999885 66664 44444433 33 34577
Q ss_pred CCCeeccCCccceEE
Q 016838 364 QRESVTKGGICNNIL 378 (381)
Q Consensus 364 ~~PtVtD~GnvNNVL 378 (381)
-...+......++|+
T Consensus 91 Ya~~~~~~~~~~~~~ 105 (106)
T cd02855 91 YAFYSELRPGTASIV 105 (106)
T ss_pred CceeeEeCCCCeEEe
Confidence 666555444455553
No 11
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.56 E-value=0.00024 Score=57.57 Aligned_cols=58 Identities=22% Similarity=0.427 Sum_probs=45.3
Q ss_pred EEEEEEeec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 016838 290 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 355 (381)
Q Consensus 290 k~VTF~W~g---~AkeVeVaGSFN---nW~~--~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV 355 (381)
..|+|.... .++.|+|+||.. +|++ .++|.... ++.....|++++.||.| .++|||+|
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNE--------GTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBES--------SSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhcccccccc--------CCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 467887744 489999999996 8997 46776531 11256899999999988 69999999
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.00014 Score=78.03 Aligned_cols=68 Identities=24% Similarity=0.408 Sum_probs=52.7
Q ss_pred CcEEEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCe-----ee
Q 016838 288 GLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----WK 360 (381)
Q Consensus 288 gLk~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGe-----W~ 360 (381)
|...|+|+..+| ++.|.|.|+||+|+. .+|... ..++.|.|.+++. +++| +.|||.|++. ++
T Consensus 34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~-~~~~~~---------~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~ 102 (628)
T COG0296 34 GVSGVRFRVWAPNARRVSLVGDFNDWDG-RRMPMR---------DRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLK 102 (628)
T ss_pred CCCceEEEEECCCCCeEEEEeecCCccc-eecccc---------cCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeec
Confidence 566899976665 999999999999987 344332 1136799999998 9999 9999999764 37
Q ss_pred cCCCCC
Q 016838 361 VDPQRE 366 (381)
Q Consensus 361 ~DP~~P 366 (381)
.||-.-
T Consensus 103 ~DP~a~ 108 (628)
T COG0296 103 ADPYAR 108 (628)
T ss_pred cCchhh
Confidence 777654
No 13
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.43 E-value=0.00054 Score=56.27 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=48.3
Q ss_pred EEEEEeecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEEcC---------
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDG--------- 357 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~--~~IpM~Kd~~~~~~a~~~skesGvFsttL-~LpPG~YEYKFIVDG--------- 357 (381)
.++|+..++ |+.|.|.. |++|. ..++|.++ ..|+|.+.+ .+.+|. .|+|.|||
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g~~~p~~~~~ 75 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHGPYDPERGLR 75 (103)
T ss_pred CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECCccCcccCcc
Confidence 478877666 99999998 66664 34678764 689999998 466765 79999999
Q ss_pred ----eeecCCCCCeec
Q 016838 358 ----QWKVDPQRESVT 369 (381)
Q Consensus 358 ----eW~~DP~~PtVt 369 (381)
....||-...+.
T Consensus 76 ~~~~~~~~DPYA~~~~ 91 (103)
T cd02856 76 FNPAKLLLDPYARALD 91 (103)
T ss_pred cCCCeEEecCCcceEc
Confidence 556666665554
No 14
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.43 E-value=0.00045 Score=73.14 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=49.9
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEE-cCee--ecC
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD 362 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG-~YEYKFIV-DGeW--~~D 362 (381)
..|+|+..+| |++|+|+|+|++|... .+|.+. ..|+|.+++. +.+| .|.|++.+ ||.| ..|
T Consensus 38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 105 (633)
T PRK12313 38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID 105 (633)
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence 3789987776 9999999999999864 578763 6799999997 4555 56666644 5765 456
Q ss_pred CCCCeec
Q 016838 363 PQRESVT 369 (381)
Q Consensus 363 P~~PtVt 369 (381)
|-...+.
T Consensus 106 Pya~~~~ 112 (633)
T PRK12313 106 PFAFYFE 112 (633)
T ss_pred CceEEEe
Confidence 6655443
No 15
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.40 E-value=0.00056 Score=74.57 Aligned_cols=69 Identities=26% Similarity=0.431 Sum_probs=52.8
Q ss_pred CcEEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---cCeee-
Q 016838 288 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQWK- 360 (381)
Q Consensus 288 gLk~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIV---DGeW~- 360 (381)
|..-|+|+..+| |++|.|+|+||+|... .+|.+. ..|+|++.+. +.+| ..|||.| ||.+.
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~ 202 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAG-ARYKYAITAADGRVLL 202 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCC-CEEEEEEEcCCCeEee
Confidence 445789977666 9999999999999864 578763 6899999984 7777 4677777 78764
Q ss_pred -cCCCCCeec
Q 016838 361 -VDPQRESVT 369 (381)
Q Consensus 361 -~DP~~PtVt 369 (381)
.||-...+.
T Consensus 203 k~DPYA~~~e 212 (730)
T PRK12568 203 KADPVARQTE 212 (730)
T ss_pred cCCCcceEee
Confidence 688765544
No 16
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.38 E-value=0.0013 Score=55.82 Aligned_cols=55 Identities=24% Similarity=0.558 Sum_probs=43.2
Q ss_pred EEEEEeec----CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 016838 291 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 355 (381)
Q Consensus 291 ~VTF~W~g----~AkeVeVaGS---FNnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV 355 (381)
.|+|.... .++.|+|+|+ +.+|++. ++|.... ...+.|++++.||++ .++|||+|
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence 46666654 4899999999 8999853 5776530 145789999999988 89999999
No 17
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.29 E-value=0.0021 Score=52.39 Aligned_cols=68 Identities=26% Similarity=0.437 Sum_probs=50.0
Q ss_pred EEEEEEeec---CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC--
Q 016838 290 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-- 357 (381)
Q Consensus 290 k~VTF~W~g---~AkeVeVaGSF---NnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DG-- 357 (381)
..|+|.... .|+.++|+|+- .+|++..+|.. ..+.|++.+.+|+| .+||||++ ||
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v 68 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV 68 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence 356676654 48999999987 59997777764 24569999999988 79999999 44
Q ss_pred eeecCCCCCeecc
Q 016838 358 QWKVDPQRESVTK 370 (381)
Q Consensus 358 eW~~DP~~PtVtD 370 (381)
.|...++.-....
T Consensus 69 ~WE~g~Nr~~~~~ 81 (92)
T cd05818 69 IWEGGNNRVLELP 81 (92)
T ss_pred EEEeCCCEEEEcc
Confidence 4877665443333
No 18
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=97.22 E-value=0.0033 Score=51.70 Aligned_cols=74 Identities=28% Similarity=0.556 Sum_probs=51.0
Q ss_pred cEEEEEEeec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---c
Q 016838 289 LEVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 356 (381)
Q Consensus 289 Lk~VTF~W~g---~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---D 356 (381)
...|+|.... .++.|+|+|+- .+|++. ++|... ..+...+.|++++.||+| .++|||+| |
T Consensus 6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~--------~~t~~~~~W~~~v~lp~~~~veYKy~~~~~~ 77 (106)
T cd05811 6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSAS--------QYTSSNPLWSVTIPLPAGTSFEYKFIRKESD 77 (106)
T ss_pred EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccc--------cCccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence 3578887654 48999999986 489863 567542 011245789999999988 59999997 2
Q ss_pred C--eeecCCCCCeecc
Q 016838 357 G--QWKVDPQRESVTK 370 (381)
Q Consensus 357 G--eW~~DP~~PtVtD 370 (381)
| .|...++.-....
T Consensus 78 ~~~~WE~~~nr~~~~~ 93 (106)
T cd05811 78 GSVTWESDPNRSYTVP 93 (106)
T ss_pred CcEEEecCCCeEEECC
Confidence 3 3877764443334
No 19
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.19 E-value=0.0011 Score=71.07 Aligned_cols=68 Identities=31% Similarity=0.436 Sum_probs=50.9
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcC---ee--ec
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--KV 361 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDG---eW--~~ 361 (381)
..|+|+..++ |++|.|+|+||+|... .+|.+. ..|+|.+.+. +.+| ..|||.|+| .+ +.
T Consensus 38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~ 104 (639)
T PRK14706 38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKM 104 (639)
T ss_pred ccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEecc
Confidence 3688977665 9999999999999864 588764 5699999986 4555 468888865 43 67
Q ss_pred CCCCCeecc
Q 016838 362 DPQRESVTK 370 (381)
Q Consensus 362 DP~~PtVtD 370 (381)
||-...+..
T Consensus 105 DPYa~~~~~ 113 (639)
T PRK14706 105 DPYGSFFEV 113 (639)
T ss_pred CcceEEEec
Confidence 877665443
No 20
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.17 E-value=0.0027 Score=52.24 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=49.7
Q ss_pred EEEEEEeec----CCceEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC
Q 016838 290 EVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 357 (381)
Q Consensus 290 k~VTF~W~g----~AkeVeVaG---SFNnW~~~I-pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DG 357 (381)
.+|+|.... .++.|+|+| .+.+|+... +|... .....+.|++++.||+| .++|||++ ||
T Consensus 3 v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~---------~~~~~~~W~~~~~lp~~~~veyKyv~~~~~~ 73 (99)
T cd05809 3 VPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLY---------YNSHSNDWRGTVHLPAGRNIEFKAIKKSKDG 73 (99)
T ss_pred eEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccc---------cCCCCCCEEEEEEecCCCcEEEEEEEEcCCC
Confidence 678888743 389999999 567998642 23321 00245789999999998 69999999 44
Q ss_pred ---eeecCCCCCeecc
Q 016838 358 ---QWKVDPQRESVTK 370 (381)
Q Consensus 358 ---eW~~DP~~PtVtD 370 (381)
.|...++.-....
T Consensus 74 ~~~~WE~g~nr~~~~p 89 (99)
T cd05809 74 TNKSWQGGQQSWYPVP 89 (99)
T ss_pred CeeEEecCCCeeEECC
Confidence 2766665443333
No 21
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.16 E-value=0.0039 Score=51.86 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=51.3
Q ss_pred EEEEEEeec-----CCceEEEEeee---CCCcccc-----ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 016838 290 EVVEIQYSG-----DGEIVEVAGSF---NGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 355 (381)
Q Consensus 290 k~VTF~W~g-----~AkeVeVaGSF---NnW~~~I-----pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV 355 (381)
.+|+|.... .++.|+|+|+- .+|+... +|.. .....|.+++.||.| ..||||++
T Consensus 3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEEE
Confidence 678898863 37999999987 4998632 4532 255789999999998 69999999
Q ss_pred ---cC--eeecCCCCCeecc
Q 016838 356 ---DG--QWKVDPQRESVTK 370 (381)
Q Consensus 356 ---DG--eW~~DP~~PtVtD 370 (381)
|| .|...++.-...+
T Consensus 71 ~~~~g~v~WE~g~Nr~~~~p 90 (103)
T cd05820 71 APADGTGTWEGGSNHAYTTP 90 (103)
T ss_pred ECCCCCEEEEeCCCEeEECC
Confidence 55 3877766555444
No 22
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.12 E-value=0.0023 Score=50.83 Aligned_cols=73 Identities=14% Similarity=0.043 Sum_probs=51.1
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc-CeeecCCCCCe
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRES 367 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVD-GeW~~DP~~Pt 367 (381)
..++|+..++ |++|.|...+ |. .++|.++ ..|+|++++..-+|. .|+|.|+ |..+.||....
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 3578977766 9999999643 43 4788764 689999998533775 4777777 56888999887
Q ss_pred eccCCccceEE
Q 016838 368 VTKGGICNNIL 378 (381)
Q Consensus 368 VtD~GnvNNVL 378 (381)
...+.+-++++
T Consensus 72 ~~~~~~~~s~v 82 (85)
T cd02853 72 QPEGVHGPSQV 82 (85)
T ss_pred CCCCCCCCeEe
Confidence 65433334443
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.11 E-value=0.0015 Score=74.78 Aligned_cols=67 Identities=33% Similarity=0.574 Sum_probs=50.1
Q ss_pred CcEEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc---Cee--
Q 016838 288 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW-- 359 (381)
Q Consensus 288 gLk~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVD---GeW-- 359 (381)
+...|.|+..+| |+.|.|+|+||+|... .+|.+. ...|+|++.+. +.+|. .|||.|+ |.|
T Consensus 636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~ 703 (1224)
T PRK14705 636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE 703 (1224)
T ss_pred CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence 445788966665 9999999999999864 467653 35799999985 78885 6888885 554
Q ss_pred ecCCCCC
Q 016838 360 KVDPQRE 366 (381)
Q Consensus 360 ~~DP~~P 366 (381)
+.||-..
T Consensus 704 k~DPyA~ 710 (1224)
T PRK14705 704 KADPLAF 710 (1224)
T ss_pred cCCcccc
Confidence 4576553
No 24
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.09 E-value=0.0017 Score=54.40 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=43.2
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCee
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 359 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~---~--~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGeW 359 (381)
..++|+..++ |+.|.|.. |++|. + .++|.++. ....|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 7 ~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~ 72 (119)
T cd02852 7 GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPF 72 (119)
T ss_pred CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCC
Confidence 3578877665 99999999 88886 2 35676531 124699999985 67886 6999999854
No 25
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.95 E-value=0.0019 Score=67.72 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=52.5
Q ss_pred EEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcC-eeecCCCCCee
Q 016838 292 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV 368 (381)
Q Consensus 292 VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDG-eW~~DP~~PtV 368 (381)
|+|+..++ |++|.|.+. + ..++|.+. ..|+|++++. +.+| +.|+|.||| .-+.||.....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 57876665 999999972 3 35789874 6799999996 7788 789999999 68889998876
Q ss_pred ccCCccceEE
Q 016838 369 TKGGICNNIL 378 (381)
Q Consensus 369 tD~GnvNNVL 378 (381)
..+.+..+++
T Consensus 64 ~~~~~~~S~V 73 (542)
T TIGR02402 64 PDGVHGPSQV 73 (542)
T ss_pred ccCCCCCeEE
Confidence 5433323443
No 26
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.91 E-value=0.0018 Score=71.07 Aligned_cols=64 Identities=16% Similarity=0.271 Sum_probs=47.1
Q ss_pred EEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-------eCCeeEEEEEEEc---Ce
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ 358 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-------LpPG~YEYKFIVD---Ge 358 (381)
.++|+..+| |++|.|+|+||+|+.. .+|.+. +.|+|++.+. ++.| ..|||.|. |.
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~ 181 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGR 181 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeC------------CCCEEEEEECCccccccCCCC-CEEEEEEEeCCCc
Confidence 678866665 9999999999999864 578874 6899999985 3445 36788874 54
Q ss_pred --eecCCCCCe
Q 016838 359 --WKVDPQRES 367 (381)
Q Consensus 359 --W~~DP~~Pt 367 (381)
.+.||-...
T Consensus 182 ~~~r~dpya~~ 192 (758)
T PLN02447 182 WVDRIPAWIKY 192 (758)
T ss_pred EEeecCchHhe
Confidence 456775543
No 27
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.90 E-value=0.0033 Score=67.92 Aligned_cols=69 Identities=28% Similarity=0.452 Sum_probs=49.8
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEc-Cee--ecC
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD 362 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG-~YEYKFIVD-GeW--~~D 362 (381)
..|+|+..++ |++|.|+|+||+|... .+|.+. ...|+|.+++. +++| .|.|++..+ |.| ..|
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 199 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD 199 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence 3688987776 9999999999999764 578763 26799999985 6777 666666654 454 456
Q ss_pred CCCCeec
Q 016838 363 PQRESVT 369 (381)
Q Consensus 363 P~~PtVt 369 (381)
|-.-.+.
T Consensus 200 PYa~~~~ 206 (726)
T PRK05402 200 PYAFAAE 206 (726)
T ss_pred CceEEEe
Confidence 6554433
No 28
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.86 E-value=0.013 Score=48.08 Aligned_cols=67 Identities=25% Similarity=0.560 Sum_probs=47.7
Q ss_pred EEEEeec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE--c--
Q 016838 292 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D-- 356 (381)
Q Consensus 292 VTF~W~g----~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG--~YEYKFIV--D-- 356 (381)
|+|+... .++.|+|+|+- .+|++. ++|... ....|++++.+|++ .++|||++ +
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~ 69 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS 69 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence 5666544 48999999986 589853 567642 56789999999886 59999999 2
Q ss_pred C--eeecCCCCCeecc
Q 016838 357 G--QWKVDPQRESVTK 370 (381)
Q Consensus 357 G--eW~~DP~~PtVtD 370 (381)
| .|..-++.-....
T Consensus 70 ~~~~WE~g~nr~~~~p 85 (99)
T cd05816 70 GVVSWENGPNRELSAP 85 (99)
T ss_pred CcEEEEcCCCeEEECC
Confidence 3 2766655444333
No 29
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.79 E-value=0.015 Score=46.14 Aligned_cols=46 Identities=26% Similarity=0.525 Sum_probs=37.1
Q ss_pred CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCC--e-eEEEEEEE
Q 016838 299 DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP--G-TYEIKFIV 355 (381)
Q Consensus 299 ~AkeVeVaGSFN---nW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpP--G-~YEYKFIV 355 (381)
.++.|+|+|+.. +|++. ++|... ...+.|.+++.+|+ | .++|||++
T Consensus 12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~-----------~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 12 FGQSVYVVGSHPELGNWDPAKALRLNTS-----------NSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCEEEEEeCcHHhCCcChhcCccccCC-----------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 489999999984 89853 567653 12689999999998 7 79999999
No 30
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.75 E-value=0.0053 Score=50.59 Aligned_cols=45 Identities=24% Similarity=0.449 Sum_probs=36.6
Q ss_pred CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 016838 299 DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 355 (381)
Q Consensus 299 ~AkeVeVaGS---FNnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV 355 (381)
.|+.|+|+|+ ..+|++. ++|... ....|++++.+|+| .++|||+|
T Consensus 12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~------------~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 12 FGEAVYISGNCNQLGNWNPSKAKRMQWN------------EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCEEEEEeCcHHHCCCCccccCcccCC------------CCCCEEEEEEECCCCcEEEEEEE
Confidence 4899999999 4689864 567542 45789999999988 69999999
No 31
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.72 E-value=0.015 Score=47.88 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=50.2
Q ss_pred cEEEEEEee-c---CCceEEEEeee---CCCcccc--ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---
Q 016838 289 LEVVEIQYS-G---DGEIVEVAGSF---NGWHHRI--KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--- 355 (381)
Q Consensus 289 Lk~VTF~W~-g---~AkeVeVaGSF---NnW~~~I--pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV--- 355 (381)
.++|+|... . .++.|+|+|+- .+|++.. .|... ........|++.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~--------~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~ 73 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFN--------QVVYQYPNWYYDVSVPAGTTIEFKFIKKNG 73 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccc--------cCCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence 367888874 2 38999999987 4998642 22210 011255789999999998 69999999
Q ss_pred cCe--eecCCCCCeecc
Q 016838 356 DGQ--WKVDPQRESVTK 370 (381)
Q Consensus 356 DGe--W~~DP~~PtVtD 370 (381)
||. |...++.-....
T Consensus 74 ~~~~~WE~g~nr~~~~p 90 (101)
T cd05807 74 DNTVTWESGSNHTYTAP 90 (101)
T ss_pred CCCEEEEeCCCEEEeCC
Confidence 453 877665444433
No 32
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.68 E-value=0.0071 Score=49.01 Aligned_cols=53 Identities=28% Similarity=0.511 Sum_probs=41.2
Q ss_pred EEEEEeec----CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 016838 291 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 355 (381)
Q Consensus 291 ~VTF~W~g----~AkeVeVaGSF---NnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV 355 (381)
+|+|+... +++.|+|+|+= .+|+...+|... ..+.|.+++.||++ .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence 56776644 35778899986 489877788642 45789999999998 59999998
No 33
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.52 E-value=0.0081 Score=63.81 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=50.4
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc---Ce--eec
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV 361 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVD---Ge--W~~ 361 (381)
..++|+..+| |+.|.|+|+||+|... .+|.+. ...|+|++.+. +.+|. .|+|.|+ |. ++.
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~ 95 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA 95 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence 4678977665 9999999999999764 477653 24799999885 46665 5888884 54 477
Q ss_pred CCCCCeec
Q 016838 362 DPQRESVT 369 (381)
Q Consensus 362 DP~~PtVt 369 (381)
||-.-.+.
T Consensus 96 DPYA~~~~ 103 (613)
T TIGR01515 96 DPYAFYAE 103 (613)
T ss_pred CCCEeeec
Confidence 88776544
No 34
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.28 E-value=0.0079 Score=65.08 Aligned_cols=63 Identities=21% Similarity=0.077 Sum_probs=45.8
Q ss_pred EEEEEeec-CCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--cCe--eecCCCC
Q 016838 291 VVEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQR 365 (381)
Q Consensus 291 ~VTF~W~g-~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIV--DGe--W~~DP~~ 365 (381)
-++|+..+ .|++|.|+|+||+ ....+|.+. ...|+|++.+.+..|.. |||.| ||+ .+.||-.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 46775544 5999999999996 344688763 36799999999777743 66666 885 5667766
Q ss_pred C
Q 016838 366 E 366 (381)
Q Consensus 366 P 366 (381)
-
T Consensus 96 f 96 (726)
T PRK05402 96 F 96 (726)
T ss_pred c
Confidence 3
No 35
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.04 E-value=0.039 Score=45.58 Aligned_cols=67 Identities=27% Similarity=0.446 Sum_probs=47.0
Q ss_pred EEEEEee-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC
Q 016838 291 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 357 (381)
Q Consensus 291 ~VTF~W~-g---~AkeVeVaGSFN---nW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DG 357 (381)
.|+|... . .++.|+|+|+-. +|++. ++|... ....|.+.+.||.| ..+|||++ +|
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~ 69 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN 69 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence 4566533 2 489999999874 99864 456432 45789999999998 79999998 22
Q ss_pred -----eeecCCCCCeec
Q 016838 358 -----QWKVDPQRESVT 369 (381)
Q Consensus 358 -----eW~~DP~~PtVt 369 (381)
.|...++.-...
T Consensus 70 ~~~~v~WE~g~Nr~~~~ 86 (97)
T cd05810 70 PTAGVQWQGGGNNQLTT 86 (97)
T ss_pred CcceEEEeeCCCEEEeC
Confidence 476666554333
No 36
>PLN02316 synthase/transferase
Probab=95.66 E-value=0.16 Score=58.02 Aligned_cols=61 Identities=13% Similarity=0.395 Sum_probs=44.6
Q ss_pred EEEEEEeec------CCceEEEEeeeCCCccccc--cCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-cC
Q 016838 290 EVVEIQYSG------DGEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG 357 (381)
Q Consensus 290 k~VTF~W~g------~AkeVeVaGSFNnW~~~Ip--M~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIV-DG 357 (381)
.+|++-|.. ...+|.|.|.||+|..... +... +.....++.|.+++.+|+.-|-.-|+. ||
T Consensus 329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~-------~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLV-------KSEEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceee-------cccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 588888873 3689999999999986421 1111 112234558899999999999999998 66
No 37
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.43 E-value=0.052 Score=44.46 Aligned_cols=65 Identities=18% Similarity=0.379 Sum_probs=43.8
Q ss_pred EEEEeec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cCe-
Q 016838 292 VEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DGQ- 358 (381)
Q Consensus 292 VTF~W~g---~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DGe- 358 (381)
|+|...+ .|+.|.|+|+- .+|+.. ++|... .+.....|++++.+|++ .++|||+| ||.
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~---------~~~~~~~W~~~v~~~~~~~veYky~v~~~~~~~ 72 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPS---------HQGDVLVWSGSISVPPGFSSEYNYYVVDDRKSV 72 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeec---------CCCCCCEEEEEEEeCCCCcEEEEEEEEcCCCcE
Confidence 4555443 38999999987 589753 567431 11234589999999887 59999999 342
Q ss_pred --eecCCCC
Q 016838 359 --WKVDPQR 365 (381)
Q Consensus 359 --W~~DP~~ 365 (381)
|-..++.
T Consensus 73 ~~wE~g~nr 81 (101)
T cd05815 73 LRSESGEKR 81 (101)
T ss_pred EEeecCCCE
Confidence 6555543
No 38
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.89 E-value=0.1 Score=55.48 Aligned_cols=65 Identities=25% Similarity=0.281 Sum_probs=46.8
Q ss_pred EEEEEeecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE--cCe--e
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV--DGQ--W 359 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~~-----~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIV--DGe--W 359 (381)
.|+|+..++ |++|.|.+ |++|.. .++|.+. ..|+|++.+. +.+|. .|+|.| +|. +
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~-~Y~y~v~~~~~~~~ 85 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGY-FYTYQVCINGKWRE 85 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCC-EEEEEEEcCCCeEE
Confidence 488977666 99999997 888853 3578763 6799999996 56663 355555 565 5
Q ss_pred ecCCCCCeec
Q 016838 360 KVDPQRESVT 369 (381)
Q Consensus 360 ~~DP~~PtVt 369 (381)
+.||-...+.
T Consensus 86 ~~DPya~~~~ 95 (605)
T TIGR02104 86 TVDPYAKAVT 95 (605)
T ss_pred EcCCCcceec
Confidence 8899876554
No 39
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.00 E-value=0.14 Score=41.77 Aligned_cols=63 Identities=24% Similarity=0.561 Sum_probs=38.6
Q ss_pred EEEEEeec------CCceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-cC--ee
Q 016838 291 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW 359 (381)
Q Consensus 291 ~VTF~W~g------~AkeVeVaGSFNnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIV-DG--eW 359 (381)
+|++.|.. ++.+|.+.+.|++|... +.|.+. +.....+.|.+++.+|..-|+..|+. || .|
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~--------~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w 74 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKM--------CVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNW 74 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEE--------SS---TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCccee--------eeeecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence 67777743 37899999999999865 456553 11123799999999999999999998 65 56
Q ss_pred ec
Q 016838 360 KV 361 (381)
Q Consensus 360 ~~ 361 (381)
-.
T Consensus 75 DN 76 (87)
T PF03423_consen 75 DN 76 (87)
T ss_dssp ES
T ss_pred eC
Confidence 43
No 40
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=93.85 E-value=0.54 Score=40.71 Aligned_cols=55 Identities=22% Similarity=0.416 Sum_probs=37.8
Q ss_pred eecCCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe----eEEEEEEE
Q 016838 296 YSGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV 355 (381)
Q Consensus 296 W~g~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG----~YEYKFIV 355 (381)
+..++++|+|+|+- .+|+.. ++|....- + ........|.+.+.|++| .++|||+.
T Consensus 11 ~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~y----t-~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 11 FADRDTELLVLGSRPELGSWDPQRAVPMRPARK----A-LSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred ecCCCCEEEEEECchhcCCCCcccccccccccc----c-ccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 44568999999985 589864 45653200 0 001244579999999986 79999998
No 41
>PLN02316 synthase/transferase
Probab=92.84 E-value=0.5 Score=54.10 Aligned_cols=56 Identities=27% Similarity=0.427 Sum_probs=43.3
Q ss_pred cEEEEEEeecC------CceEEEEeeeCCCcccc------ccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 016838 289 LEVVEIQYSGD------GEIVEVAGSFNGWHHRI------KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 355 (381)
Q Consensus 289 Lk~VTF~W~g~------AkeVeVaGSFNnW~~~I------pM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIV 355 (381)
-.+|++-|... ..+|++.|+||.|.+.. .|.+. ...+.|.+++.+|..-|-..|+.
T Consensus 490 G~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~-----------~~g~~~~a~v~vP~da~~mdfvF 557 (1036)
T PLN02316 490 GTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA-----------DNGSHLKATVKVPLDAYMMDFVF 557 (1036)
T ss_pred CCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec-----------CCCceEEEEEEccccceEEEEEE
Confidence 36889988652 58999999999998753 24432 23345689999999999999988
No 42
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=92.76 E-value=0.3 Score=53.20 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=41.4
Q ss_pred EEEEEeecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCee
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 359 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~~----~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGeW 359 (381)
.|+|+..++ |+.|.|. -|++|.. .++|.+. ..|+|.+.+. +.+|.| |+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPER------------TDDIWHGYLPGAQPGQL-YGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccC------------CCCEEEEEECCCCCCCE-EEEEEeeee
Confidence 578977776 9999996 6766542 3567653 6799999995 778875 999999853
No 43
>PLN02950 4-alpha-glucanotransferase
Probab=92.46 E-value=0.82 Score=51.66 Aligned_cols=70 Identities=20% Similarity=0.386 Sum_probs=52.0
Q ss_pred cEEEEEEeec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE--
Q 016838 289 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV-- 355 (381)
Q Consensus 289 Lk~VTF~W~g----~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG--~YEYKFIV-- 355 (381)
.++|+|.... .|+.|+|+|+- .+|++. ++|.. .....|.+++.++++ ..+|||++
T Consensus 152 ~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~~ 219 (909)
T PLN02950 152 EIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQT 219 (909)
T ss_pred ceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEEc
Confidence 3678888644 48999999987 499864 34543 256889999999988 59999999
Q ss_pred -cC--eeecCCCCCeecc
Q 016838 356 -DG--QWKVDPQRESVTK 370 (381)
Q Consensus 356 -DG--eW~~DP~~PtVtD 370 (381)
+| .|...++.-...+
T Consensus 220 ~~g~v~WE~g~NR~~~~p 237 (909)
T PLN02950 220 AEGLVSLELGVNRELSLD 237 (909)
T ss_pred CCCceEEeeCCCceeecC
Confidence 44 3877776655554
No 44
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=92.42 E-value=0.81 Score=39.72 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=53.1
Q ss_pred EEEEEEee----cCCceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEcCe-
Q 016838 290 EVVEIQYS----GDGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ- 358 (381)
Q Consensus 290 k~VTF~W~----g~AkeVeVaGSFNnW~~~-----IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIVDGe- 358 (381)
..|||-|. +....|.|-|..|+.... ..|.+- .+..+|..++.|+.+ +-.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~ 70 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD 70 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence 47999999 446889999999999653 346654 356899999999998 88999997533
Q ss_pred ---------------eecCCCCCeec-c----CCccceEEE
Q 016838 359 ---------------WKVDPQRESVT-K----GGICNNILR 379 (381)
Q Consensus 359 ---------------W~~DP~~PtVt-D----~GnvNNVL~ 379 (381)
-+.||-||... . .|+.-++++
T Consensus 71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~ 111 (122)
T PF11806_consen 71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE 111 (122)
T ss_dssp -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence 35699999775 2 267777765
No 45
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=92.11 E-value=0.66 Score=47.45 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=56.4
Q ss_pred CCcEEEEEEeecC-C-------ceEEEEeeeCCCc------cccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEE
Q 016838 287 SGLEVVEIQYSGD-G-------EIVEVAGSFNGWH------HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEI 351 (381)
Q Consensus 287 sgLk~VTF~W~g~-A-------keVeVaGSFNnW~------~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEY 351 (381)
.+.+.|||-|+++ + +.|+|.+ |+.. ....|.+- ....+|..++.||.. +-.|
T Consensus 36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~--n~~tdh~~~~~~~~l~rl-----------~~tDvW~~~~~~p~~~r~sY 102 (411)
T PRK10439 36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYI--NGVTDHHQNSQPQSLQRI-----------AGTDVWQWSTELSANWRGSY 102 (411)
T ss_pred CCcEEEEEEeeCCCCCcccccceeEEEeC--CCCCCcCccCCcchhhcc-----------CCCceEEEEEEECcccEEEE
Confidence 4568999999985 3 3588743 3333 22357775 367899999999999 8999
Q ss_pred EEEEc---C-------------------------eeecCCCCCeeccC--CccceEEEe
Q 016838 352 KFIVD---G-------------------------QWKVDPQRESVTKG--GICNNILRV 380 (381)
Q Consensus 352 KFIVD---G-------------------------eW~~DP~~PtVtD~--GnvNNVL~V 380 (381)
+|+++ . .-+.||.||....+ |+..|+|++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 103 CFIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred EEEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 99993 1 11479999987642 444577654
No 46
>PLN02960 alpha-amylase
Probab=91.97 E-value=0.14 Score=57.46 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=43.1
Q ss_pred EEEE-EeecCCceEEEEeeeCCCccccc-cCCCCCCCccccccccCCCcEEEEEE--eCCe-------eEEEEEEEc
Q 016838 291 VVEI-QYSGDGEIVEVAGSFNGWHHRIK-MDPLPSSSIIEPIRSRKSRLWSTVLW--LYPG-------TYEIKFIVD 356 (381)
Q Consensus 291 ~VTF-~W~g~AkeVeVaGSFNnW~~~Ip-M~Kd~~~~~~a~~~skesGvFsttL~--LpPG-------~YEYKFIVD 356 (381)
-|.| .|..+|..+.|+|+||||++... |.+ +-.++.+-|+|.++++ |.+| .-||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 5666 66667999999999999998643 432 1134457899999984 7777 236888876
No 47
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=90.56 E-value=0.64 Score=53.57 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=48.2
Q ss_pred EEEEEeecC-CceEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-----eEEEEEEEcC--
Q 016838 291 VVEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG-- 357 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGS-FNnW~~---~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG-----~YEYKFIVDG-- 357 (381)
.++|+..++ |++|.|.+- +++|.. .++|.+. ..|+|++.+. +.+| -|.|+|.|+|
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~ 395 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGG 395 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCC
Confidence 378977766 999999984 455653 4678763 6899999986 4443 4789999976
Q ss_pred --eeecCCCCCee
Q 016838 358 --QWKVDPQRESV 368 (381)
Q Consensus 358 --eW~~DP~~PtV 368 (381)
..+.||-...+
T Consensus 396 ~~~~~~DPYA~al 408 (1111)
T TIGR02102 396 DKVLALDPYAKSL 408 (1111)
T ss_pred ceEEEeChhheEE
Confidence 46778876644
No 48
>PLN02950 4-alpha-glucanotransferase
Probab=90.39 E-value=1.6 Score=49.45 Aligned_cols=67 Identities=18% Similarity=0.440 Sum_probs=46.7
Q ss_pred EEEEEEeec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC
Q 016838 290 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 357 (381)
Q Consensus 290 k~VTF~W~g---~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DG 357 (381)
..|+|.... .|++|.|+|+- .+|+.. ++|... +......|++++.|++| ..+|||++ ||
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g 79 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDNK 79 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence 556666553 38999999988 489753 566432 11234589999999988 69999995 44
Q ss_pred e---eecCCCC
Q 016838 358 Q---WKVDPQR 365 (381)
Q Consensus 358 e---W~~DP~~ 365 (381)
. |...++.
T Consensus 80 ~vi~WE~g~NR 90 (909)
T PLN02950 80 NVLRWEAGKKR 90 (909)
T ss_pred ceeeeecCCCe
Confidence 3 7666643
No 49
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=89.99 E-value=1 Score=51.00 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=48.2
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc------Ce-
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ- 358 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~--~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVD------Ge- 358 (381)
..++|+..+| |+.|.|.+.+++|. ..++|.++ ...|+|++.+. ...|.| |+|.|+ |+
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v 202 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKV 202 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeE
Confidence 4688977776 99999997776664 23578763 25799999985 456653 777775 54
Q ss_pred ---eecCCCCCeec
Q 016838 359 ---WKVDPQRESVT 369 (381)
Q Consensus 359 ---W~~DP~~PtVt 369 (381)
.+.||....+.
T Consensus 203 ~~~~v~DPYA~als 216 (898)
T TIGR02103 203 ETYLVTDPYSVSLS 216 (898)
T ss_pred CCeEEeCcCcceEc
Confidence 37788776554
No 50
>PRK03705 glycogen debranching enzyme; Provisional
Probab=89.90 E-value=0.71 Score=50.29 Aligned_cols=65 Identities=26% Similarity=0.446 Sum_probs=47.0
Q ss_pred EEEEEeecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCee-------
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW------- 359 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~--~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGeW------- 359 (381)
.|+|+..++ |+.|.|.. |+++. ..++|.+ ...|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~~p~~g~~ 85 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPWQPAQGHR 85 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEccccCcccCcc
Confidence 588977666 99999997 77653 2457765 26799999985 66775 5999999853
Q ss_pred ------ecCCCCCeec
Q 016838 360 ------KVDPQRESVT 369 (381)
Q Consensus 360 ------~~DP~~PtVt 369 (381)
..||-...+.
T Consensus 86 ~~~~~~~~DPYA~~~~ 101 (658)
T PRK03705 86 FNPAKLLIDPCARQVE 101 (658)
T ss_pred cCCCcEecCcCceEEc
Confidence 4677665543
No 51
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=85.80 E-value=3.7 Score=33.28 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=38.0
Q ss_pred EEEEEEeec---CCceEEEEeeeCC--Cc-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 016838 290 EVVEIQYSG---DGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 355 (381)
Q Consensus 290 k~VTF~W~g---~AkeVeVaGSFNn--W~-~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIV 355 (381)
.+|+|+... +...|.|.---+. |. ..++|.+.. .+.....|++++.++.|++.|.|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~--------~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDG--------SDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEee--------eCCceeEEEEEEecCCcEEEEEEEE
Confidence 456666643 3678888655443 22 246887641 1112346999999888999999999
No 52
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=81.95 E-value=4.8 Score=47.01 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=42.8
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCccc----cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCee
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 359 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~~~----IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGeW 359 (381)
..|+|+...+ |+.|.|+ .|+.|... ++|.. +..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~------------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG------------RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC------------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 4689977665 9999997 89988643 45543 36799999875 78887 6999999854
No 53
>PLN02877 alpha-amylase/limit dextrinase
Probab=73.43 E-value=9.9 Score=43.75 Aligned_cols=65 Identities=14% Similarity=0.304 Sum_probs=43.1
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc------
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------ 356 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~~~-----IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVD------ 356 (381)
..++|+..++ |+.|.|.- |++|... ++|. ...|+|++.+. ...| +.|+|.|+
T Consensus 222 ~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-------------~~~GVWsv~v~~~~~G-~~Y~Y~V~v~~p~~ 286 (970)
T PLN02877 222 DAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-------------ESNGVWSVEGPKSWEG-CYYVYEVSVYHPST 286 (970)
T ss_pred CCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-------------CCCCEEEEEeccCCCC-CeeEEEEeecccCC
Confidence 3688977666 99999984 6655321 3454 26899999986 3455 44778786
Q ss_pred Ce----eecCCCCCeec
Q 016838 357 GQ----WKVDPQRESVT 369 (381)
Q Consensus 357 Ge----W~~DP~~PtVt 369 (381)
|. .+.||....+.
T Consensus 287 g~~~~~~v~DPYA~als 303 (970)
T PLN02877 287 GKVETCYANDPYARGLS 303 (970)
T ss_pred CcccccccCCccceEEe
Confidence 32 25687776554
No 54
>PLN03244 alpha-amylase; Provisional
Probab=69.26 E-value=3.6 Score=46.57 Aligned_cols=60 Identities=18% Similarity=0.390 Sum_probs=42.5
Q ss_pred EEEE-EeecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE--eCCe----e---EEEEEEEc
Q 016838 291 VVEI-QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPG----T---YEIKFIVD 356 (381)
Q Consensus 291 ~VTF-~W~g~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~--LpPG----~---YEYKFIVD 356 (381)
.++| .|..+|.--.|+|+||||.+.....++ +..++.+-|+|.+.+. |.+| . -||.|.-|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAARE------GHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCcccccccc------ccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 4555 787789999999999999986444332 1134457899999984 7777 2 36777654
No 55
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=65.84 E-value=14 Score=31.08 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=42.0
Q ss_pred EEEEEeec---CCceEEEE-eeeCCC----c-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--cCe-
Q 016838 291 VVEIQYSG---DGEIVEVA-GSFNGW----H-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ- 358 (381)
Q Consensus 291 ~VTF~W~g---~AkeVeVa-GSFNnW----~-~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIV--DGe- 358 (381)
+|+|+.+. +.++|.|. |+-..| . ..++|.+. ..+..-..|.+++.++..+..|.|.| +|+
T Consensus 22 ~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~--------~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~ 93 (120)
T PF02903_consen 22 TLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKI--------ASDELFDYYEATLKLPEKRLRYYFELEDGGET 93 (120)
T ss_dssp EEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEE--------EEESSEEEEEEEEE-TTSEEEEEEEEEETTEE
T ss_pred EEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEE--------EeCCCeEEEEEEEECCCCeEEEEEEEEeCCEE
Confidence 45555543 47888886 666665 1 23578764 22334568899999999988888888 343
Q ss_pred eecCCCC
Q 016838 359 WKVDPQR 365 (381)
Q Consensus 359 W~~DP~~ 365 (381)
|..+...
T Consensus 94 ~~y~~~G 100 (120)
T PF02903_consen 94 YYYGERG 100 (120)
T ss_dssp EEEETTE
T ss_pred EEEeCCc
Confidence 5555443
No 56
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=64.71 E-value=7.5 Score=29.28 Aligned_cols=44 Identities=23% Similarity=0.414 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHhHhchhhHHHHHHHhhHHH
Q 016838 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKF 107 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~-~vps~~el~~hgr~dlan~vrrrg~k~ 107 (381)
+.++.+|++.|.+-.+|+| .+||..+|+++ -+.....=|+.++.
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~--~~vsr~tvr~al~~ 47 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAER--YGVSRTTVREALRR 47 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHH--HTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHH--hccCCcHHHHHHHH
Confidence 4678999999999999998 68999999985 33333333444443
No 57
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=61.91 E-value=9.1 Score=42.88 Aligned_cols=42 Identities=24% Similarity=0.462 Sum_probs=31.0
Q ss_pred EEEEeecC-CceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEe
Q 016838 292 VEIQYSGD-GEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWL 344 (381)
Q Consensus 292 VTF~W~g~-AkeVeVaGSFNnW~~~I-pM~Kd~~~~~~a~~~skesGvFsttL~L 344 (381)
|.++-.++ ++.|.++|+||+|+... .|.. ....|.|++.+.-
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~-----------k~~~g~w~i~l~~ 158 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKP-----------KDDLGVWEIDLPP 158 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCc-----------ccccceeEEecCc
Confidence 77755554 89999999999998752 2331 1478999998863
No 58
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=61.29 E-value=17 Score=29.52 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=38.5
Q ss_pred EEEEEEeecC---CceEEEEeee-CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-c-CeeecC
Q 016838 290 EVVEIQYSGD---GEIVEVAGSF-NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-D-GQWKVD 362 (381)
Q Consensus 290 k~VTF~W~g~---AkeVeVaGSF-NnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIV-D-GeW~~D 362 (381)
-.|.+.+.++ -..|+|.++- ..| ++|.+. -...|.+.-.++.|-+.+|+.. | |+|..-
T Consensus 14 l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~------------wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 14 LAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS------------WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEECCTTS-EEEEEEEETTSSS----EE-EEE------------CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC------------cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 4567777765 2779999544 458 578763 4569998877778889999988 7 887653
No 59
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=60.52 E-value=23 Score=31.64 Aligned_cols=64 Identities=28% Similarity=0.392 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHhHhchhhHHHHHHHhhHHHHHHHHhCCCCCCCCcccccc
Q 016838 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEK 127 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~-~vps~~el~~hgr~dlan~vrrrg~k~i~~l~~~~~~~~~~~~~~~~ 127 (381)
..+++-|++=+.+=-|+|| ++||++||+.+=..-. |-| +|+|+-+.+.===-+.-+.+.||++.
T Consensus 14 ~QI~~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNp-nTv-~raY~eLE~eG~i~t~rg~G~fV~~~ 78 (125)
T COG1725 14 EQIANQIKEQIASGELKPGDKLPSVRELAKDLGVNP-NTV-QRAYQELEREGIVETKRGKGTFVTED 78 (125)
T ss_pred HHHHHHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCH-HHH-HHHHHHHHHCCCEEEecCeeEEEcCC
Confidence 3567777777777777776 6999999997655444 444 46787654421001123335566654
No 60
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=59.75 E-value=10 Score=41.87 Aligned_cols=63 Identities=30% Similarity=0.350 Sum_probs=49.7
Q ss_pred hhhhhccchhh-------HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccchH
Q 016838 215 SEARRRENQLE-------IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDE 277 (381)
Q Consensus 215 ~~~~~~~~~~e-------~~~l~~m~~qkele~~~~k~q~~~~K~~ls~lq~k~~~ei~~a~kLl~eKd~ 277 (381)
+|+.|.+=+.| |+++|..+-|+++|+++||.+||.+.-++--|...-..++.-...||-.+.+
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~p 167 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIP 167 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCc
Confidence 56666655555 4678999999999999999999999988877777777777777777776665
No 61
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=59.00 E-value=12 Score=26.51 Aligned_cols=30 Identities=30% Similarity=0.343 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCCCC-CCCChHHHhHhch
Q 016838 64 LYNDLREFLSTVGLSES-HVPSMKELSAHGR 93 (381)
Q Consensus 64 l~~d~~ef~s~~~l~~~-~vps~~el~~hgr 93 (381)
++..|+..+....+++| .+||.+||+++=-
T Consensus 1 i~~~l~~~i~~~~~~~~~~l~s~~~la~~~~ 31 (60)
T smart00345 1 VAERLREDIVSGELRPGDKLPSERELAAQLG 31 (60)
T ss_pred CHHHHHHHHHcCCCCCCCcCcCHHHHHHHHC
Confidence 35678888888887655 5889999998743
No 62
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=56.43 E-value=20 Score=25.16 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHhHhchhhHHHHHHH
Q 016838 66 NDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRR 102 (381)
Q Consensus 66 ~d~~ef~s~~~l~~~~vps~~el~~hgr~dlan~vrr 102 (381)
+||++||...|+|..+-. .-|++|-+.||+
T Consensus 7 ~~L~~wL~~~gi~~~~~~-------~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA-------KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCCCCCC-------CCHHHHHHHHHH
Confidence 689999999999876544 567888888875
No 63
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=56.02 E-value=21 Score=30.26 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=40.6
Q ss_pred EEEEEeecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe--------eEEEEEEEcCe--
Q 016838 291 VVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--------TYEIKFIVDGQ-- 358 (381)
Q Consensus 291 ~VTF~W~g~--AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG--------~YEYKFIVDGe-- 358 (381)
..++...+- .+.|.|.=+||+|.....+.-.................|...+.|++. .+-.+|.++|.
T Consensus 22 ~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ey 101 (113)
T PF03370_consen 22 SGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQEY 101 (113)
T ss_dssp EEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTEEE
T ss_pred EEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCCEE
Confidence 344555553 588999999999986543321100000001112234588888888654 57789999996
Q ss_pred eecC
Q 016838 359 WKVD 362 (381)
Q Consensus 359 W~~D 362 (381)
|-.+
T Consensus 102 WDNN 105 (113)
T PF03370_consen 102 WDNN 105 (113)
T ss_dssp EEST
T ss_pred ecCC
Confidence 5443
No 64
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=54.41 E-value=37 Score=30.39 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=35.3
Q ss_pred CCcEEEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEE
Q 016838 287 SGLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 352 (381)
Q Consensus 287 sgLk~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYK 352 (381)
+---+|+|.|... +..|...++..-|... .+.- ..+-.|+.++.- ||.|.|+
T Consensus 59 ~pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~------------~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 59 KPGDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA------------GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CCCCEEEEEECCCCCceEEEeCCCCccccc-cccc------------CCCcceEEEecc-cceEEEE
Confidence 3335899999887 9999999988555542 2221 134566666655 9999986
No 65
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=49.92 E-value=35 Score=35.56 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCCcEEEEEE--eCCeeEEEEEEEcCe
Q 016838 334 KSRLWSTVLW--LYPGTYEIKFIVDGQ 358 (381)
Q Consensus 334 esGvFsttL~--LpPG~YEYKFIVDGe 358 (381)
.+|+|+..+. .+||.|+..+.+||.
T Consensus 169 ~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 169 GDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred CCceEEEEeeccCCCceEEEEEEEcCc
Confidence 6799998875 589999999999984
No 66
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=44.05 E-value=30 Score=31.84 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhHhchhhHHHHHHHhhHHHHHHHHhCCC---CCCCCccccc
Q 016838 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSST---KPGFNGFVAE 126 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~~el~~hgr~dlan~vrrrg~k~i~~l~~~~~---~~~~~~~~~~ 126 (381)
+++.++|++-|..=.+++|. +||.+||+++= ....+.=|+ -|.+|....- ..+.+.||+.
T Consensus 3 ~qi~~~l~~~I~~g~~~~G~~LPsE~eLa~~~--gVSR~TVR~---Al~~L~~eGli~r~~G~GTfV~~ 66 (233)
T TIGR02404 3 EQIYQDLEQKITHGQYKEGDYLPSEHELMDQY--GASRETVRK---ALNLLTEAGYIQKIQGKGSIVLN 66 (233)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHH--CCCHHHHHH---HHHHHHHCCCEEEeCCceEEEec
Confidence 46889999999999999986 99999999862 122222222 3455554433 4555667765
No 67
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=43.29 E-value=31 Score=31.50 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhHhchhhHHHHHHHhhHHHHHHHHhCCC---CCCCCcccccc
Q 016838 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSST---KPGFNGFVAEK 127 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~~el~~hgr~dlan~vrrrg~k~i~~l~~~~~---~~~~~~~~~~~ 127 (381)
+.+.++|++-|..=.+++|. +||.+||+++= +...+.=|+ -|.+|....- ..+.+-||...
T Consensus 11 ~~i~~~l~~~I~~g~~~~G~~LPsE~eLa~~~--~VSR~TvR~---Al~~L~~eGli~r~~G~GtfV~~~ 75 (238)
T TIGR02325 11 RQIADKIEQEIAAGHLRAGDYLPAEMQLAERF--GVNRHTVRR---AIAALVERGLLRAEQGRGTFVAAR 75 (238)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHH--CCCHHHHHH---HHHHHHHCCCEEEecCCEEEECCC
Confidence 67889999999998898876 99999999752 222222222 2444444332 34556677644
No 68
>TIGR03337 phnR transcriptional regulator protein. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii.
Probab=40.63 E-value=56 Score=29.73 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhHhc
Q 016838 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHG 92 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~~el~~hg 92 (381)
+.+.++|++-|..-++++|. +||.+||++.=
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~lPsE~eLa~~~ 35 (231)
T TIGR03337 4 LYIKDHLSYQIRAGALLPGDKLPSERDLGERF 35 (231)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHH
Confidence 46889999999999998885 99999999873
No 69
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=39.88 E-value=60 Score=27.93 Aligned_cols=28 Identities=25% Similarity=0.676 Sum_probs=20.5
Q ss_pred CCCcEEEEEEeCCeeEEEEEEEcCeeecCCCC
Q 016838 334 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQR 365 (381)
Q Consensus 334 esGvFsttL~LpPG~YEYKFIVDGeW~~DP~~ 365 (381)
..-+|-.. |.|-|+|.|. +|.|+++-+.
T Consensus 56 ~~QIWlas---~sG~~hf~~~-~~~W~~~r~g 83 (105)
T PRK00446 56 LHELWLAA---KSGGFHFDYK-DGEWICDRSG 83 (105)
T ss_pred hhheeEec---CCCCccceec-CCeEEECCCC
Confidence 45677776 4677888885 9999987544
No 70
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=39.48 E-value=40 Score=31.07 Aligned_cols=61 Identities=26% Similarity=0.398 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhHhchhhHHHHHHHhhHHHHHHHHhCCC---CCCCCcccccc
Q 016838 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSST---KPGFNGFVAEK 127 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~~el~~hgr~dlan~vrrrg~k~i~~l~~~~~---~~~~~~~~~~~ 127 (381)
+++.++|++-|..=.+++|. +||.+||++.= +...+.=|+ -|..|....- ..+.+.||+..
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~LPsE~eLa~~~--~VSR~TVR~---Al~~L~~eGli~r~~G~GtfV~~~ 68 (230)
T TIGR02018 4 QRIKQDILERIRSGEWPPGHRIPSEHELVAQY--GCSRMTVNR---ALRELTDAGLLERRQGVGTFVAEP 68 (230)
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHH--CCCHHHHHH---HHHHHHHCCCEEEecCCEEEEccC
Confidence 57889999999999998886 99999999742 222222222 3444444332 34445677653
No 71
>PRK14999 histidine utilization repressor; Provisional
Probab=39.41 E-value=38 Score=31.46 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCC-CCChHHHhHh
Q 016838 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (381)
Q Consensus 61 ~~~l~~d~~ef~s~~~l~~~~-vps~~el~~h 91 (381)
=+.+.++|++-|..-.+++|. +||-+||++.
T Consensus 14 y~qi~~~i~~~I~~g~~~~G~~LPsE~eLa~~ 45 (241)
T PRK14999 14 YETVKQDICKKIAGGVWQPHDRIPSEAELVAQ 45 (241)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCHHHHHHH
Confidence 378899999999999999996 9999999975
No 72
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=38.17 E-value=11 Score=31.27 Aligned_cols=14 Identities=57% Similarity=1.486 Sum_probs=0.0
Q ss_pred ccccCCCCCceeeEEEeeec
Q 016838 19 LWQWHPPRKHLSFTICCASS 38 (381)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~ 38 (381)
+||||| |||.+++.
T Consensus 47 ~~q~HP------FTIas~~~ 60 (105)
T PF08022_consen 47 FWQWHP------FTIASSPE 60 (105)
T ss_dssp --------------------
T ss_pred cccccc------cEeeccCC
Confidence 799998 78855544
No 73
>PRK12423 LexA repressor; Provisional
Probab=38.16 E-value=37 Score=31.32 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCChHHHhHh
Q 016838 61 NEELYNDLREFLSTVGLSESHVPSMKELSAH 91 (381)
Q Consensus 61 ~~~l~~d~~ef~s~~~l~~~~vps~~el~~h 91 (381)
..+++.-|++|+..-|+| ||++||+++
T Consensus 8 q~~il~~l~~~i~~~g~~----Ps~~eia~~ 34 (202)
T PRK12423 8 RAAILAFIRERIAQAGQP----PSLAEIAQA 34 (202)
T ss_pred HHHHHHHHHHHHHHcCCC----CCHHHHHHH
Confidence 468999999999999999 999999984
No 74
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=37.84 E-value=33 Score=27.72 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=28.8
Q ss_pred CCCCCCCChHHHhHhchhhHHHHHHHhhHHHHHHH
Q 016838 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQL 111 (381)
Q Consensus 77 l~~~~vps~~el~~hgr~dlan~vrrrg~k~i~~l 111 (381)
+|-.|+++..||.+....+|+.+++ .+.+.+++.
T Consensus 42 iPk~h~~~~~~l~~~~~~~l~~~~~-~~~~~l~~~ 75 (104)
T cd01278 42 IPKEHIASLKALTKEDVPLLEHMET-VGREKLLRS 75 (104)
T ss_pred EecCCCCChHHCCHhHHHHHHHHHH-HHHHHHHHH
Confidence 5778999999999999999999988 677766554
No 75
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=37.34 E-value=49 Score=36.67 Aligned_cols=66 Identities=30% Similarity=0.349 Sum_probs=54.9
Q ss_pred chhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccchHHHHHHHhhcC
Q 016838 222 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLS 287 (381)
Q Consensus 222 ~~~e~~~l~~m~~qkele~~~~k~q~~~~K~~ls~lq~k~~~ei~~a~kLl~eKd~~Ld~Ae~aLs 287 (381)
+--+|+-+.+.|.||+-++.+|...|+..+++|+-+..+....|+.-.+.+..|...|..-++.|+
T Consensus 276 ~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 276 KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335688899999999999999999999999999998888888888888888888776665555543
No 76
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.26 E-value=17 Score=36.47 Aligned_cols=31 Identities=35% Similarity=0.353 Sum_probs=24.4
Q ss_pred chhhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 016838 222 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKL 252 (381)
Q Consensus 222 ~~~e~~~l~~m~~qkele~~~~k~q~~~~K~ 252 (381)
=+.||++|+-|||||..++..--.||-+-|+
T Consensus 230 lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 230 LKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 3579999999999999988776666655554
No 77
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=33.00 E-value=51 Score=25.87 Aligned_cols=26 Identities=23% Similarity=0.603 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCChHHHhHh
Q 016838 62 EELYNDLREFLSTVGLSESHVPSMKELSAH 91 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~vps~~el~~h 91 (381)
.+++.=|++|+..-|.| ||.+|+++|
T Consensus 9 ~~vL~~I~~~~~~~G~~----Pt~rEIa~~ 34 (65)
T PF01726_consen 9 KEVLEFIREYIEENGYP----PTVREIAEA 34 (65)
T ss_dssp HHHHHHHHHHHHHHSS-------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC----CCHHHHHHH
Confidence 46788889999998887 799999887
No 78
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.65 E-value=50 Score=35.98 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=24.1
Q ss_pred CCCcEEEEEEeCCe-eEEEEEEEc---CeeecCCC
Q 016838 334 KSRLWSTVLWLYPG-TYEIKFIVD---GQWKVDPQ 364 (381)
Q Consensus 334 esGvFsttL~LpPG-~YEYKFIVD---GeW~~DP~ 364 (381)
.+|.|-+.|.++|| .|.|+|.|| |.+.+-+.
T Consensus 96 ~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h 130 (563)
T KOG1263|consen 96 QDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSH 130 (563)
T ss_pred ccCCccccCCcCCCCeEEEEEEeCCcceeEEEeec
Confidence 35688899999999 799999999 44444333
No 79
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=32.61 E-value=37 Score=28.22 Aligned_cols=53 Identities=15% Similarity=0.304 Sum_probs=42.9
Q ss_pred hhhHHHHHHhhhH--HHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccc
Q 016838 223 QLEIDHLKFMLHQ--KEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDK 275 (381)
Q Consensus 223 ~~e~~~l~~m~~q--kele~~~~k~q~~~~K~~ls~lq~k~~~ei~~a~kLl~eK 275 (381)
+-+-+++..|-.. .+-++.+..+-+++++.++-..+.|...++.+-..+|.+.
T Consensus 24 ~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~ 78 (90)
T PF02970_consen 24 EEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEE 78 (90)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHC
Confidence 3445666666665 7888999999999999999999999999988888776643
No 80
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=32.57 E-value=1.4e+02 Score=25.92 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=11.3
Q ss_pred EEEEEEeecCCceEEE
Q 016838 290 EVVEIQYSGDGEIVEV 305 (381)
Q Consensus 290 k~VTF~W~g~AkeVeV 305 (381)
-+|+|.|...+..|..
T Consensus 23 dTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 23 DTVTFVPTDKGHNVET 38 (116)
T ss_pred CEEEEEECCCCeeEEE
Confidence 4788888877666654
No 81
>PRK09764 DNA-binding transcriptional repressor MngR; Provisional
Probab=32.18 E-value=58 Score=30.31 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhHhchhhHHHHHHHhhHHHHHHHHhCCC---CCCCCcccccc
Q 016838 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSST---KPGFNGFVAEK 127 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~~el~~hgr~dlan~vrrrg~k~i~~l~~~~~---~~~~~~~~~~~ 127 (381)
+.+.++|++-|..=.+++|. +||-+||++.=..-= .-|| +-|.+|....- ..+.+-||+..
T Consensus 8 ~qi~~~L~~~I~~g~~~~G~~LPsE~eL~~~~~VSR-~TvR----~Al~~L~~eGli~r~~G~GtfV~~~ 72 (240)
T PRK09764 8 RQIADRIREQIARGELKPGDALPTESALQTEFGVSR-VTVR----QALRQLVEQQILESIQGSGTYVKEE 72 (240)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHHHCCCH-HHHH----HHHHHHHHCCCEEEecCceeEEccc
Confidence 57889999999999999997 999999987521110 1123 24555555433 34445577543
No 82
>PRK10785 maltodextrin glucosidase; Provisional
Probab=31.34 E-value=1.7e+02 Score=31.72 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=34.1
Q ss_pred CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeC--CeeEEEEEEE--cCe
Q 016838 300 GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PGTYEIKFIV--DGQ 358 (381)
Q Consensus 300 AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~Lp--PG~YEYKFIV--DGe 358 (381)
...|.|.=..++-...++|.+.. .+.....|.+++.++ ++++.|.|.| +|+
T Consensus 33 ~~~v~l~~~~~~~~~~~~m~~~~--------~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 33 PQRVMLRCEPDNEEYLLPMEKQR--------SQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred eEEEEEEEEcCCCEEEEEeEEee--------cCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 46888876555554557888751 112234699999885 7888888888 554
No 83
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=31.08 E-value=87 Score=22.39 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhHhc
Q 016838 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHG 92 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~~el~~hg 92 (381)
.+++.+|++++....++.|. +|+.++|++|=
T Consensus 4 ~~~~~~i~~~i~~~~~~~~~~~~~~~~la~~~ 35 (66)
T cd07377 4 EQIADQLREAILSGELKPGDRLPSERELAEEL 35 (66)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH
Confidence 57889999999888886665 67799988874
No 84
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=30.82 E-value=1.1e+02 Score=24.87 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=9.5
Q ss_pred CcEEEEE-EeCCeeEEE
Q 016838 336 RLWSTVL-WLYPGTYEI 351 (381)
Q Consensus 336 GvFsttL-~LpPG~YEY 351 (381)
..++.++ .++||+|+|
T Consensus 74 ~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEF 90 (104)
T ss_dssp -EEEEEEEE-S-EEEEE
T ss_pred CEEEEEEcCCCCEEEEE
Confidence 4556665 789999887
No 85
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=29.93 E-value=77 Score=33.93 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=38.6
Q ss_pred hhhhhhhhccccccccccchH-----HHHHHHhhcCCcEEEEEEeecCCceEEEEeeeCC
Q 016838 257 LQTKAVTEINKAEKLISDKDE-----ELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNG 311 (381)
Q Consensus 257 lq~k~~~ei~~a~kLl~eKd~-----~Ld~Ae~aLsgLk~VTF~W~g~AkeVeVaGSFNn 311 (381)
-..+...++...++.+.-|-+ .+.-...+..+.+|+.+.-...-.++.++|||.|
T Consensus 138 ~k~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG 197 (459)
T KOG0272|consen 138 QKARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSG 197 (459)
T ss_pred HHHHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCC
Confidence 344455566666666655543 3444455577889999988888889999999986
No 86
>PRK11402 DNA-binding transcriptional regulator FrlR; Provisional
Probab=29.58 E-value=68 Score=29.75 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhHh
Q 016838 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~~el~~h 91 (381)
+.+.++|++-|.+=.+|+|+ +||.+||++.
T Consensus 12 ~qI~~~i~~~I~~G~~~~g~kLPsE~eLa~~ 42 (241)
T PRK11402 12 ATVRQRLLDDIAQGVYQAGQQIPTENELCTQ 42 (241)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHH
Confidence 68889999999999999987 9999999864
No 87
>PRK04984 fatty acid metabolism regulator; Provisional
Probab=29.17 E-value=72 Score=29.33 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhHh
Q 016838 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~~el~~h 91 (381)
+.+++.|++.|-.-.|++|. +||.+||++.
T Consensus 10 ~~~~~~l~~~I~~g~l~pG~~LPsE~eLae~ 40 (239)
T PRK04984 10 GFAEEYIIESIWNNRFPPGSILPAERELSEL 40 (239)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHH
Confidence 46899999999999999998 6999999875
No 88
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=27.93 E-value=43 Score=26.94 Aligned_cols=16 Identities=38% Similarity=0.825 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHhcC
Q 016838 61 NEELYNDLREFLSTVG 76 (381)
Q Consensus 61 ~~~l~~d~~ef~s~~~ 76 (381)
.+++..+||+|+|..|
T Consensus 4 re~i~~~iR~~fs~lG 19 (62)
T PF15513_consen 4 REEITAEIRQFFSQLG 19 (62)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4688899999999877
No 89
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=27.81 E-value=63 Score=27.17 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=27.7
Q ss_pred cchhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccchHHHHHHHh
Q 016838 221 ENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEE 284 (381)
Q Consensus 221 ~~~~e~~~l~~m~~qkele~~~~k~q~~~~K~~ls~lq~k~~~ei~~a~kLl~eKd~~Ld~Ae~ 284 (381)
+-+.|+.++..-+.+-..++.++++.++..- +.-+.+|.++|.++.+-..=.+.+++
T Consensus 32 ~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~-------~~~~a~If~ah~~~L~D~~l~~~v~~ 88 (123)
T PF05524_consen 32 DIEAEIERLEQALEKAREELEQLAERAESKL-------GEEEAAIFEAHLMMLEDPELIDEVEE 88 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------HSSCTHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHhcCHhHHHHHHH
Confidence 3344555555555444444444433321111 22344788888888766554444333
No 90
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=27.72 E-value=60 Score=30.53 Aligned_cols=32 Identities=28% Similarity=0.687 Sum_probs=19.9
Q ss_pred CCCccccccCCCCCCCccccccccCCCcEEEEEEe-CCeeEEEEEE
Q 016838 310 NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWL-YPGTYEIKFI 354 (381)
Q Consensus 310 NnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~L-pPG~YEYKFI 354 (381)
..|.. ++|... .+..|...+.+ .+|.|+|+..
T Consensus 55 ~~w~~-vpM~~~------------gnDrW~a~f~~~~~G~~~f~Ve 87 (187)
T PF11896_consen 55 REWQE-VPMTPL------------GNDRWEASFTPDRPGRYEFRVE 87 (187)
T ss_dssp -B-----B-EES------------TS-EEEEEEE--SSEEEEEEEE
T ss_pred Cccee-eccccC------------CCCEEEEEEECCCceeEEEEEE
Confidence 45864 899863 78999999987 6899999865
No 91
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=27.42 E-value=1.6e+02 Score=23.20 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=55.2
Q ss_pred CCCceeeEEEeeecCCCCCCCCCCCCCCcccccccCcHHHHHHHHHHHHhcCCCCCCCCChHHHhH--hchhhHHHHHHH
Q 016838 25 PRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSA--HGRDDLANIVRR 102 (381)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~k~~~~l~~d~~ef~s~~~l~~~~vps~~el~~--hgr~dlan~vrr 102 (381)
..+|--++|.+-+... .......|||++=.+|...|++-.....||+ .|..+-+.. ....+....-|+
T Consensus 9 ~~~~~~~~~~v~~~~~--------~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~--lP~k~~~~~~~~~~~~~i~~R~~ 78 (105)
T smart00312 9 DGKHYYYVIEIETKTG--------LEEWTVSRRYSDFLELHSKLKKHFPRRILPP--LPPKKLFGRLNNFSEEFIEKRRR 78 (105)
T ss_pred CCceEEEEEEEEECCC--------CceEEEEEEHHHHHHHHHHHHHHCcCCCCCC--CCCchhcccCCcCCHHHHHHHHH
Confidence 3566667777766541 1456788999999999999998776556664 666554432 223444444444
Q ss_pred hhHHHHHHHHhCCCCCC
Q 016838 103 RGYKFIRQLLKSSTKPG 119 (381)
Q Consensus 103 rg~k~i~~l~~~~~~~~ 119 (381)
.=-.++++|++.+....
T Consensus 79 ~L~~yL~~l~~~~~~~~ 95 (105)
T smart00312 79 GLERYLQSLLNHPELIN 95 (105)
T ss_pred HHHHHHHHHHcCHhhhc
Confidence 44578999998876544
No 92
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=26.80 E-value=43 Score=25.14 Aligned_cols=16 Identities=19% Similarity=0.384 Sum_probs=12.9
Q ss_pred cCCCCCCCCChHHHhH
Q 016838 75 VGLSESHVPSMKELSA 90 (381)
Q Consensus 75 ~~l~~~~vps~~el~~ 90 (381)
.+||+||+|+.|-+-.
T Consensus 34 mELP~Yr~P~~~~vl~ 49 (54)
T PF07664_consen 34 MELPPYRMPRLKNVLR 49 (54)
T ss_pred EeCCCCCCCCHHHHHH
Confidence 5799999999886543
No 93
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=26.46 E-value=2.4e+02 Score=28.13 Aligned_cols=62 Identities=32% Similarity=0.359 Sum_probs=40.6
Q ss_pred CCCcCchhhhh---ccchhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccccc
Q 016838 209 GADFDSSEARR---RENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISD 274 (381)
Q Consensus 209 ~~~~d~~~~~~---~~~~~e~~~l~~m~~qkele~~~~k~q~~~~K~~ls~lq~k~~~ei~~a~kLl~e 274 (381)
..|++-++.-| .+...+|+..+..+.+.+.++.+++.+|++.++.. .++..+|.+|++++..
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k----~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK----QELLAEIAEAEKIREE 269 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34554443333 45667777777777777777777777777776665 4445577888887763
No 94
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=25.97 E-value=1.2e+02 Score=28.44 Aligned_cols=45 Identities=40% Similarity=0.652 Sum_probs=31.7
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHH----hhhhhhhhhhhhccccccccc
Q 016838 225 EIDHLKFMLHQKEMELSRLKEQIEKEKL----ALSVLQTKAVTEINKAEKLIS 273 (381)
Q Consensus 225 e~~~l~~m~~qkele~~~~k~q~~~~K~----~ls~lq~k~~~ei~~a~kLl~ 273 (381)
|-+-|+|-|++.|. |..|++++|. +|+-++.|+..|-.++.+|+.
T Consensus 29 e~EKLqfAlgeiei----L~kQl~rek~afe~a~~~vk~k~~~Es~k~dqL~~ 77 (153)
T PF15175_consen 29 ESEKLQFALGEIEI----LSKQLEREKLAFEKALGSVKSKVLQESSKKDQLIT 77 (153)
T ss_pred hHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554 5666677664 578899999999999988876
No 95
>PRK03837 transcriptional regulator NanR; Provisional
Probab=25.96 E-value=91 Score=28.54 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC-CCChHHHhHh
Q 016838 60 SNEELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (381)
Q Consensus 60 ~~~~l~~d~~ef~s~~~l~~~~-vps~~el~~h 91 (381)
--+.++..|++-|-.-.||+|. +||.+||+.+
T Consensus 14 ~~~~v~~~l~~~I~~g~l~pG~~Lp~E~~Lae~ 46 (241)
T PRK03837 14 LSEEVEERLEQMIRSGEFGPGDQLPSERELMAF 46 (241)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Confidence 3478999999999999999996 8899999987
No 96
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=25.48 E-value=60 Score=26.22 Aligned_cols=35 Identities=20% Similarity=0.505 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCCCCCCChHHHhHhchhhHHHHHHHhhHH
Q 016838 67 DLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYK 106 (381)
Q Consensus 67 d~~ef~s~~~l~~~~vps~~el~~hgr~dlan~vrrrg~k 106 (381)
=++.|+..+| .|+.+.|+.-+-+||..++|+.||.
T Consensus 17 ~~~~l~~~~g-----~pt~~~l~~~~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 17 IYRRLFERYG-----FPTPEALAEASEEELRELIRPLGFS 51 (108)
T ss_dssp HHHHHHHHHS-----CSSHHHHHCSHHHHHHHHHTTSTSH
T ss_pred HHHHHHHHhc-----CCCHHHHHhCCHHHHHHHhhccCCC
Confidence 3566777888 8999999999999999999999976
No 97
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.42 E-value=62 Score=35.61 Aligned_cols=27 Identities=22% Similarity=0.591 Sum_probs=23.2
Q ss_pred eCCeeEEEEEEEcCeeec---CCCCCeecc
Q 016838 344 LYPGTYEIKFIVDGQWKV---DPQRESVTK 370 (381)
Q Consensus 344 LpPG~YEYKFIVDGeW~~---DP~~PtVtD 370 (381)
-+.|.|++||-++|+|+. |...|+..+
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 467999999999999975 888888774
No 98
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=25.30 E-value=2.5e+02 Score=21.68 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=53.2
Q ss_pred CCCceeeEEEeeecCCCCCCCCCCCCCCcccccccCcHHHHHHHHHHHHhcCCCCCCCCChHHHhHhchhhHHHHHHHhh
Q 016838 25 PRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRG 104 (381)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~k~~~~l~~d~~ef~s~~~l~~~~vps~~el~~hgr~dlan~vrrrg 104 (381)
...|..|.|.+-+.. .......|||++=.+|.+.|++......+|+ .|.-+-... ...+...--|..=
T Consensus 14 ~~~~~~Y~i~v~~~~---------~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~--lP~k~~~~~-~~~~~~~~R~~~L 81 (106)
T cd06093 14 GKKYVVYIIEVTTQG---------GEEWTVYRRYSDFEELHEKLKKKFPGVILPP--LPPKKLFGN-LDPEFIEERRKQL 81 (106)
T ss_pred CCCEEEEEEEEEECC---------CCeEEEEeehHHHHHHHHHHHHHCCCCccCC--CCCCccccc-CCHHHHHHHHHHH
Confidence 356777888777654 2456788999999999999999875445554 333221111 2344444444555
Q ss_pred HHHHHHHHhCCCCC
Q 016838 105 YKFIRQLLKSSTKP 118 (381)
Q Consensus 105 ~k~i~~l~~~~~~~ 118 (381)
..++..|+.++...
T Consensus 82 ~~yl~~l~~~~~~~ 95 (106)
T cd06093 82 EQYLQSLLNHPELR 95 (106)
T ss_pred HHHHHHHhcCcccc
Confidence 78888999888654
No 99
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=25.29 E-value=86 Score=29.14 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHhHhchhhHHHHHHHhhHHHHHHHHhCCC---CCCCCccccccc
Q 016838 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSST---KPGFNGFVAEKS 128 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~-~vps~~el~~hgr~dlan~vrrrg~k~i~~l~~~~~---~~~~~~~~~~~~ 128 (381)
+.+.++|++-|.. .+++| .+||.+||++.=- ...+-=| |-|.+|....- ..+.+.||+...
T Consensus 15 ~qi~~~L~~~I~~-~~~~G~~LPsE~eLa~~~~--VSR~TVR---~Al~~L~~eGli~r~~G~GtfV~~~~ 79 (241)
T PRK10079 15 QEIAAKLEQELRQ-HYRCGDYLPAEQQLAARYE--VNRHTLR---RAIDQLVEKGWVQRRQGVGVLVLMRP 79 (241)
T ss_pred HHHHHHHHHHHhc-ccCCCCcCCCHHHHHHHHC--CCHHHHH---HHHHHHHHCCCEEEecCCEEEEecCc
Confidence 7889999999987 88776 6999999997521 1111112 23444544332 445566776543
No 100
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=25.04 E-value=97 Score=28.83 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC-CCChHHHhHh
Q 016838 60 SNEELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (381)
Q Consensus 60 ~~~~l~~d~~ef~s~~~l~~~~-vps~~el~~h 91 (381)
--+.+++.|++.|-.-.|+||. +||-+||++.
T Consensus 11 ~~~~v~~~l~~~I~~g~l~pG~~LpsE~eLa~~ 43 (254)
T PRK09464 11 LSDVIEQQLEFLILEGTLRPGEKLPPERELAKQ 43 (254)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCCCHHHHHHH
Confidence 3467999999999999999998 6999999976
No 101
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=25.02 E-value=1.2e+02 Score=25.31 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=24.4
Q ss_pred CCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCe
Q 016838 334 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 367 (381)
Q Consensus 334 esGvFsttL~LpPG~YEYKFIVDGeW~~DP~~Pt 367 (381)
..|.=++.+.|+||+|....+. |.+.+-|..|.
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 3455567889999999999888 55556565554
No 102
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=24.39 E-value=2.5e+02 Score=23.71 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=49.2
Q ss_pred CCCceeeEEEeeecCCCCCCCCCCCCCCcccccccCcHHHHHHHHHHHHhcCCCCCCCCChHHHhHhchhhHHHHHHHh-
Q 016838 25 PRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRR- 103 (381)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~k~~~~l~~d~~ef~s~~~l~~~~vps~~el~~hgr~dlan~vrrr- 103 (381)
.+.+..|+|.+.|.. ..-...|||.+=.+|...|++......| |.-+ + |..+-+-|-.||
T Consensus 16 ~~~y~~Y~I~v~~~~----------~~~~v~RRYseF~~Lh~~L~~~~~~p~~-----P~K~-~---~~~~~~~ie~Rr~ 76 (110)
T cd06880 16 EKPYTVFTIEVLVNG----------RRHTVEKRYSEFHALHKKLKKSIKTPDF-----PPKR-V---RNWNPKVLEQRRQ 76 (110)
T ss_pred CCCeEEEEEEEEECC----------eEEEEEccHHHHHHHHHHHHHHCCCCCC-----CCCC-c---cCCCHHHHHHHHH
Confidence 467888999888765 3456789999999999999987653334 4433 2 333333333333
Q ss_pred -hHHHHHHHHhCCC
Q 016838 104 -GYKFIRQLLKSST 116 (381)
Q Consensus 104 -g~k~i~~l~~~~~ 116 (381)
-.+++++|++.+.
T Consensus 77 ~Le~yL~~ll~~~~ 90 (110)
T cd06880 77 GLEAYLQGLLKINE 90 (110)
T ss_pred HHHHHHHHHHcCcc
Confidence 4689999998775
No 103
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=24.35 E-value=76 Score=23.32 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=14.6
Q ss_pred EEE-EEeCCeeEEEEEEE---cCeeecCC
Q 016838 339 STV-LWLYPGTYEIKFIV---DGQWKVDP 363 (381)
Q Consensus 339 stt-L~LpPG~YEYKFIV---DGeW~~DP 363 (381)
.++ ..|+||.|.++-.+ +|.|..++
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 444 37999999988776 57887765
No 104
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=24.13 E-value=98 Score=28.91 Aligned_cols=30 Identities=17% Similarity=0.442 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhHh
Q 016838 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~~el~~h 91 (381)
+.+++.|++-|-.-.|+||. +||.+||+..
T Consensus 5 ~~v~~~L~~~I~~g~l~pG~~LpsE~eLae~ 35 (253)
T PRK10421 5 DEVADRVRALIEEKNLEAGMKLPAERQLAMQ 35 (253)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHH
Confidence 57899999999999999997 6999999875
No 105
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=24.10 E-value=2.9e+02 Score=24.71 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=38.4
Q ss_pred EEEEEEeecC---------CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCe--
Q 016838 290 EVVEIQYSGD---------GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQ-- 358 (381)
Q Consensus 290 k~VTF~W~g~---------AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGe-- 358 (381)
..+.|++.+. +-.+.+.|.+..|+.. .++.. +....++++ ..+.||+.|||+
T Consensus 78 ~~~~~~~~~a~~~~dg~~~~~~~~~~G~~~~~~~g-~~k~g------------~~~~~~~~~----~v~yyk~~idG~~~ 140 (167)
T PF04985_consen 78 KGVRFTFRGAYQDDDGETIPVVAVIRGRIKSVDPG-EWKPG------------EKTETSIEF----SVTYYKLEIDGKEI 140 (167)
T ss_pred ccEEEEEEEEEEEcCCcEEEEEEEEEEEEEeeCCc-ccCcC------------ccccceEEE----EEEEEEEEECCEEE
Confidence 4566666542 2346777888777542 22221 222333333 267999999997
Q ss_pred eecCCCCCeec
Q 016838 359 WKVDPQRESVT 369 (381)
Q Consensus 359 W~~DP~~PtVt 369 (381)
+.+|..+.+..
T Consensus 141 ~eiD~~n~i~~ 151 (167)
T PF04985_consen 141 IEIDKLNNIYR 151 (167)
T ss_pred EEEECccCEEE
Confidence 77898888665
No 106
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=22.14 E-value=1.2e+02 Score=28.66 Aligned_cols=61 Identities=23% Similarity=0.413 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHhHhchhhHHHHHHHhhHHHHHHHHhCCC---CCCCCcccccc
Q 016838 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSST---KPGFNGFVAEK 127 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~-~vps~~el~~hgr~dlan~vrrrg~k~i~~l~~~~~---~~~~~~~~~~~ 127 (381)
+.+.++|++-|..=.+|+| .+||-.||+++= +...+-=| |-|++|....- .-+.+.||+..
T Consensus 10 ~qI~~~i~~~I~~G~~~~G~~LPsE~eLa~~f--~VSR~TvR---kAL~~L~~eGli~r~~G~GtfV~~~ 74 (236)
T COG2188 10 QQIAEDIRQRIESGELPPGDKLPSERELAEQF--GVSRMTVR---KALDELVEEGLIVRRQGKGTFVASP 74 (236)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH--CCcHHHHH---HHHHHHHHCCcEEEEecCeeEEcCc
Confidence 5688999999999999999 699999999752 22222222 34566665543 45567788875
No 107
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=21.54 E-value=4.3e+02 Score=23.22 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=17.7
Q ss_pred EeCCeeEEEEEEEc---CeeecCCCC
Q 016838 343 WLYPGTYEIKFIVD---GQWKVDPQR 365 (381)
Q Consensus 343 ~LpPG~YEYKFIVD---GeW~~DP~~ 365 (381)
.|+||.|.++-.+- ++|....+.
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F 127 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDF 127 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEE
Confidence 58999999998883 568876543
No 108
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=21.47 E-value=64 Score=23.40 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=13.6
Q ss_pred chhhHHHHHHHhhHHHH
Q 016838 92 GRDDLANIVRRRGYKFI 108 (381)
Q Consensus 92 gr~dlan~vrrrg~k~i 108 (381)
-..+++.+.|..||.|=
T Consensus 28 ~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFT 44 (49)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 45678889999999874
No 109
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=20.90 E-value=60 Score=27.66 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.5
Q ss_pred CCCCChHHHhHhchhhHHHHHHHhhHH
Q 016838 80 SHVPSMKELSAHGRDDLANIVRRRGYK 106 (381)
Q Consensus 80 ~~vps~~el~~hgr~dlan~vrrrg~k 106 (381)
.-+-|+|+|+..+...+.+..+++|+|
T Consensus 14 ~Gk~S~k~lt~~el~~vl~~l~~~G~k 40 (119)
T PF06252_consen 14 TGKSSSKDLTEAELEKVLDELKRLGFK 40 (119)
T ss_pred hChhhHHHCCHHHHHHHHHHHHHccCc
Confidence 457799999999999999999999984
No 110
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=20.26 E-value=1.5e+02 Score=22.38 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=18.4
Q ss_pred ccCCCcEEEEEEeCCeeEEEEEEEcCe
Q 016838 332 SRKSRLWSTVLWLYPGTYEIKFIVDGQ 358 (381)
Q Consensus 332 skesGvFsttL~LpPG~YEYKFIVDGe 358 (381)
++.+|.|.+. .|+||.|..++.-.|-
T Consensus 34 Td~~G~f~~~-~l~~g~Y~l~v~~~g~ 59 (82)
T PF13620_consen 34 TDSDGRFSFE-GLPPGTYTLRVSAPGY 59 (82)
T ss_dssp --TTSEEEEE-EE-SEEEEEEEEBTTE
T ss_pred ECCCceEEEE-ccCCEeEEEEEEECCc
Confidence 3578998876 5677999988877775
No 111
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=20.05 E-value=1.1e+02 Score=30.28 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=21.5
Q ss_pred eCCeeEEEEEEEcCeeec---CCCCCeec
Q 016838 344 LYPGTYEIKFIVDGQWKV---DPQRESVT 369 (381)
Q Consensus 344 LpPG~YEYKFIVDGeW~~---DP~~PtVt 369 (381)
-+.|.|.++|.++|.|+. |+.-|+..
T Consensus 98 ~~~G~y~vrl~~~G~w~~V~VDd~lP~~~ 126 (318)
T smart00230 98 NYAGIFHFRFWRFGKWVDVVIDDRLPTYN 126 (318)
T ss_pred ccCCEEEEEEEECCEEEEEEecCCCeeeC
Confidence 467999999999999876 88778754
Done!