Query 016838
Match_columns 381
No_of_seqs 142 out of 829
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 04:37:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z0n_A 5'-AMP-activated protei 99.9 1E-22 3.5E-27 165.5 9.7 81 287-381 8-89 (96)
2 3nme_A Ptpkis1 protein, SEX4 g 99.9 1.1E-22 3.7E-27 192.1 8.3 108 263-381 134-253 (294)
3 2qlv_B Protein SIP2, protein S 99.9 4E-22 1.4E-26 187.3 10.7 84 288-381 2-86 (252)
4 4aee_A Alpha amylase, catalyti 99.5 2.7E-14 9.4E-19 147.5 8.4 79 287-378 15-102 (696)
5 4aef_A Neopullulanase (alpha-a 99.2 2.2E-11 7.5E-16 124.3 8.4 68 289-369 16-84 (645)
6 2z0b_A GDE5, KIAA1434, putativ 98.3 1.8E-06 6E-11 73.6 8.4 71 287-365 6-101 (131)
7 3c8d_A Enterochelin esterase; 98.2 2.7E-06 9.3E-11 82.0 8.8 80 288-380 29-149 (403)
8 1ac0_A Glucoamylase; hydrolase 98.0 5.3E-06 1.8E-10 67.6 4.3 75 288-370 5-93 (108)
9 1m7x_A 1,4-alpha-glucan branch 97.7 0.00012 4.2E-09 74.9 9.6 68 290-369 25-100 (617)
10 3k1d_A 1,4-alpha-glucan-branch 97.5 0.00016 5.3E-09 76.7 7.8 69 289-369 135-211 (722)
11 3aml_A OS06G0726400 protein; s 97.3 0.00032 1.1E-08 74.4 7.6 65 291-368 66-144 (755)
12 1bf2_A Isoamylase; hydrolase, 96.4 0.0036 1.2E-07 65.9 6.0 55 291-358 17-84 (750)
13 1qho_A Alpha-amylase; glycosid 96.2 0.014 4.7E-07 60.4 9.1 70 289-370 581-673 (686)
14 3vgf_A Malto-oligosyltrehalose 96.1 0.0041 1.4E-07 63.0 4.8 61 291-367 10-73 (558)
15 1cyg_A Cyclodextrin glucanotra 96.1 0.022 7.7E-07 58.8 10.1 74 288-370 578-667 (680)
16 2wsk_A Glycogen debranching en 96.0 0.0088 3E-07 61.9 6.6 54 291-358 20-77 (657)
17 2vn4_A Glucoamylase; hydrolase 95.9 0.029 9.9E-07 58.2 10.1 73 290-370 497-583 (599)
18 2bhu_A Maltooligosyltrehalose 95.9 0.0082 2.8E-07 61.6 5.8 62 291-369 35-97 (602)
19 2vr5_A Glycogen operon protein 95.9 0.011 3.9E-07 61.9 6.8 55 291-359 30-91 (718)
20 2laa_A Beta/alpha-amylase; SBD 95.7 0.023 7.9E-07 47.4 6.8 67 290-369 5-79 (104)
21 3bmv_A Cyclomaltodextrin gluca 95.5 0.029 9.8E-07 58.0 8.1 73 289-370 583-670 (683)
22 1d3c_A Cyclodextrin glycosyltr 95.2 0.04 1.4E-06 57.0 8.1 73 289-370 586-673 (686)
23 2e8y_A AMYX protein, pullulana 94.9 0.034 1.2E-06 58.1 6.4 66 291-369 114-186 (718)
24 1wzl_A Alpha-amylase II; pullu 94.6 0.042 1.4E-06 55.7 6.2 59 290-356 23-87 (585)
25 1vem_A Beta-amylase; beta-alph 94.5 0.075 2.6E-06 54.3 7.9 74 286-370 415-506 (516)
26 2fhf_A Pullulanase; multiple d 94.2 0.048 1.7E-06 60.4 5.9 67 291-369 305-385 (1083)
27 1j0h_A Neopullulanase; beta-al 94.0 0.04 1.4E-06 55.9 4.5 60 289-356 22-89 (588)
28 3m07_A Putative alpha amylase; 93.3 0.12 4.1E-06 53.5 6.7 62 291-369 43-107 (618)
29 4aio_A Limit dextrinase; hydro 93.0 0.11 3.7E-06 53.9 5.9 66 291-369 137-216 (884)
30 2ya0_A Putative alkaline amylo 93.0 0.13 4.3E-06 53.8 6.4 65 292-368 26-106 (714)
31 3faw_A Reticulocyte binding pr 93.0 0.074 2.5E-06 57.7 4.7 65 292-368 146-224 (877)
32 2wan_A Pullulanase; hydrolase, 92.3 0.17 5.7E-06 54.8 6.3 64 291-368 326-399 (921)
33 1gcy_A Glucan 1,4-alpha-maltot 91.7 0.032 1.1E-06 55.8 0.0 70 289-369 430-517 (527)
34 1ji1_A Alpha-amylase I; beta/a 90.0 0.14 4.8E-06 52.4 2.8 60 290-357 30-96 (637)
35 1ea9_C Cyclomaltodextrinase; h 89.4 0.092 3.2E-06 53.2 0.9 59 290-356 23-86 (583)
36 2wan_A Pullulanase; hydrolase, 89.3 0.49 1.7E-05 51.2 6.5 55 297-360 160-221 (921)
37 2ya1_A Putative alkaline amylo 88.3 0.45 1.6E-05 52.1 5.4 64 292-367 333-412 (1014)
38 4fch_A Outer membrane protein 77.5 1.5 5.2E-05 39.3 3.4 50 300-360 12-63 (221)
39 2c3v_A Alpha-amylase G-6; carb 74.1 6.2 0.00021 32.7 5.9 66 290-367 10-82 (102)
40 4ham_A LMO2241 protein; struct 58.6 8.3 0.00028 31.6 3.7 30 62-91 17-47 (134)
41 3tqn_A Transcriptional regulat 57.3 9.4 0.00032 30.6 3.7 31 62-92 12-43 (113)
42 2djm_A Glucoamylase A; beta sa 55.8 25 0.00085 29.1 6.1 68 291-362 22-97 (106)
43 4dny_A Metalloprotease STCE; m 53.1 32 0.0011 29.8 6.5 25 340-365 98-123 (126)
44 4fe9_A Outer membrane protein 49.5 15 0.00052 35.9 4.5 46 300-356 150-197 (470)
45 3neu_A LIN1836 protein; struct 49.2 16 0.00056 29.7 4.0 31 62-92 16-47 (125)
46 3mxz_A Tubulin-specific chaper 49.1 18 0.00063 30.5 4.4 65 223-287 32-105 (116)
47 2eef_A Protein phosphatase 1, 46.3 23 0.0008 31.2 4.8 70 291-365 49-131 (156)
48 3tnu_B Keratin, type II cytosk 45.2 34 0.0012 28.5 5.4 64 222-285 34-97 (129)
49 4fe9_A Outer membrane protein 43.2 19 0.00066 35.2 4.2 53 300-363 260-319 (470)
50 3tnu_A Keratin, type I cytoske 41.6 28 0.00097 29.1 4.4 63 223-285 37-99 (131)
51 3ic7_A Putative transcriptiona 37.3 13 0.00044 30.5 1.6 30 62-91 14-44 (126)
52 3qh9_A Liprin-beta-2; coiled-c 35.6 65 0.0022 26.1 5.3 52 224-286 26-77 (81)
53 1qsd_A Protein (beta-tubulin b 35.4 20 0.00067 29.8 2.4 66 221-286 26-96 (106)
54 2ek5_A Predicted transcription 34.1 36 0.0012 28.0 3.9 30 62-91 7-37 (129)
55 1mhx_A Immunoglobulin-binding 31.5 14 0.00049 28.4 0.9 14 355-368 48-61 (65)
56 1v4r_A Transcriptional repress 30.7 37 0.0013 26.2 3.2 31 61-91 13-44 (102)
57 1h7c_A Tubulin-specific chaper 29.3 36 0.0012 28.2 3.0 65 223-287 31-102 (108)
58 3by6_A Predicted transcription 29.3 45 0.0015 27.2 3.6 31 61-91 13-44 (126)
59 2eap_A Lymphocyte cytosolic pr 29.0 29 0.001 28.6 2.4 34 75-108 6-39 (90)
60 3edp_A LIN2111 protein; APC883 28.5 45 0.0015 29.9 3.7 30 62-91 12-42 (236)
61 4fch_A Outer membrane protein 27.1 34 0.0012 30.4 2.7 49 301-359 117-169 (221)
62 2wv0_A YVOA, HTH-type transcri 26.7 52 0.0018 29.5 3.8 32 61-92 12-44 (243)
63 3bwg_A Uncharacterized HTH-typ 26.5 45 0.0015 29.8 3.4 31 62-92 8-39 (239)
64 1igd_A Protein G; immunoglobul 26.4 20 0.0007 27.5 0.9 14 355-368 44-57 (61)
65 3fil_A Immunoglobulin G-bindin 25.2 15 0.00051 27.8 -0.0 14 355-368 39-52 (56)
66 4fem_A Outer membrane protein 25.0 45 0.0015 31.5 3.2 51 300-361 149-201 (358)
67 4egu_A Histidine triad (HIT) p 24.9 43 0.0015 26.6 2.7 34 77-111 44-77 (119)
68 2d3d_A VTS1 protein; RNA bindi 24.7 56 0.0019 26.5 3.3 54 59-113 12-76 (88)
69 3vkg_A Dynein heavy chain, cyt 23.1 53 0.0018 40.9 4.0 45 253-297 2043-2090(3245)
70 2jnz_A PHL P 3 allergen; timot 21.6 1.4E+02 0.0047 24.9 5.2 57 290-362 28-90 (108)
71 2di3_A Bacterial regulatory pr 21.2 78 0.0027 27.7 3.8 30 62-91 7-37 (239)
72 2r9f_A Calpain-1 catalytic sub 21.0 49 0.0017 31.8 2.6 25 345-369 120-147 (339)
73 4abm_A Charged multivesicular 20.9 81 0.0028 24.8 3.4 31 242-272 10-40 (79)
74 2rpv_A Immunoglobulin G-bindin 20.4 31 0.001 27.4 0.9 14 355-368 58-71 (75)
75 3eet_A Putative GNTR-family tr 20.0 82 0.0028 28.9 3.8 63 61-128 31-97 (272)
No 1
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=99.88 E-value=1e-22 Score=165.54 Aligned_cols=81 Identities=35% Similarity=0.593 Sum_probs=73.5
Q ss_pred CCcEEEEEEeecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCC
Q 016838 287 SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRE 366 (381)
Q Consensus 287 sgLk~VTF~W~g~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~P 366 (381)
...++|+|+|..+|++|+|+|+||+|+ .++|.++ .|.|++++.|++|.|+|||+|||+|++||.+|
T Consensus 8 ~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~-------------~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~ 73 (96)
T 1z0n_A 8 AQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS-------------QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEP 73 (96)
T ss_dssp --CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE-------------TTEEEEEEEECSEEEEEEEEETTEEECCTTSC
T ss_pred CCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC-------------CCEEEEEEEccCCCEEEEEEECCeEEcCCCCC
Confidence 456899999998899999999999999 7899862 48999999999999999999999999999999
Q ss_pred eecc-CCccceEEEeC
Q 016838 367 SVTK-GGICNNILRVI 381 (381)
Q Consensus 367 tVtD-~GnvNNVL~V~ 381 (381)
++.+ .|+.||+|.|.
T Consensus 74 ~~~d~~G~~Nnvi~V~ 89 (96)
T 1z0n_A 74 IVTSQLGTVNNIIQVK 89 (96)
T ss_dssp EEECTTSCEEEEEEEC
T ss_pred eEECCCCCEeEEEEEc
Confidence 9987 79999999984
No 2
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=99.87 E-value=1.1e-22 Score=192.14 Aligned_cols=108 Identities=25% Similarity=0.421 Sum_probs=86.0
Q ss_pred hhccccccccccchH------HHHHHHhh-cC--CcEEEEEEeec-CCceEEEEeeeCCCccccccCCCCCCCccccccc
Q 016838 263 TEINKAEKLISDKDE------ELIAAEES-LS--GLEVVEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRS 332 (381)
Q Consensus 263 ~ei~~a~kLl~eKd~------~Ld~Ae~a-Ls--gLk~VTF~W~g-~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~s 332 (381)
..+.+|-..+.++++ .+..+... |. ..++|+|+|.+ +|++|+|+|+||||+..++|.++
T Consensus 134 ~s~~~A~~~v~~~Rp~~Pn~~~l~~~~~~~L~~~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~----------- 202 (294)
T 3nme_A 134 YKLMEAHKLLMSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLG----------- 202 (294)
T ss_dssp CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEEC-----------
T ss_pred CCHHHHHHHHHHhCCCCCChhhhhHHHHHhhhccccccceeeeccCCCCEEEEEEeccCCCCcccceEc-----------
Confidence 345556655555554 12222222 33 34899999999 59999999999999988999986
Q ss_pred cCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCee-cc-CCccceEEEeC
Q 016838 333 RKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV-TK-GGICNNILRVI 381 (381)
Q Consensus 333 kesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~PtV-tD-~GnvNNVL~V~ 381 (381)
..+|.|++++.||||.|+|||+|||+|++||++|.+ .| .|++||+|.|.
T Consensus 203 ~~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~~nn~~~v~ 253 (294)
T 3nme_A 203 KGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVV 253 (294)
T ss_dssp TTTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTSCCEEEEEEC
T ss_pred CCCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCCCEeEEEEEC
Confidence 247999999999999999999999999999999987 45 79999999984
No 3
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1
Probab=99.86 E-value=4e-22 Score=187.34 Aligned_cols=84 Identities=31% Similarity=0.438 Sum_probs=77.1
Q ss_pred CcEEEEEEeecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCe
Q 016838 288 GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 367 (381)
Q Consensus 288 gLk~VTF~W~g~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~Pt 367 (381)
.+++|+|+|.++|++|+|+|+|++|++.++|.+.. .++|.|++++.|+||.|+|||+|||+|++||++|+
T Consensus 2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~----------~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~ 71 (252)
T 2qlv_B 2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPT 71 (252)
T ss_dssp CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECS----------SSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCE
T ss_pred CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceecc----------CCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCE
Confidence 46899999999999999999999999888998731 25799999999999999999999999999999999
Q ss_pred ecc-CCccceEEEeC
Q 016838 368 VTK-GGICNNILRVI 381 (381)
Q Consensus 368 VtD-~GnvNNVL~V~ 381 (381)
+.+ .|+.||+|.|.
T Consensus 72 ~~d~~G~~nNvi~V~ 86 (252)
T 2qlv_B 72 ATDQMGNFVNYIEVR 86 (252)
T ss_dssp EBCSSCCCEEEEEEC
T ss_pred EecCCCcCcceeecc
Confidence 987 79999999984
No 4
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=99.49 E-value=2.7e-14 Score=147.47 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=67.1
Q ss_pred CCcEEEEEEeec--CCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeee--c
Q 016838 287 SGLEVVEIQYSG--DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK--V 361 (381)
Q Consensus 287 sgLk~VTF~W~g--~AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~--~ 361 (381)
.+..+|+|++.. +|++|+|+||||+|++. .+|.+ .+|.|++++.||||+|+|||+|||+|. +
T Consensus 15 ~~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~-------------~~~~~~~~~~L~~g~~~y~f~vdg~~~~~~ 81 (696)
T 4aee_A 15 KGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRK-------------IEEQGIVYLKLWPGEYGYGFQIDNDFENVL 81 (696)
T ss_dssp EEEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEE-------------ETTEEEEEEEECSEEEEEEEEETTCCSCCC
T ss_pred CCcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEe-------------cCCeEEEEEEcCCceEEEEEEECCEEeecC
Confidence 355789999887 58999999999999763 57765 489999999999999999999999999 8
Q ss_pred CCCCCeec---c-CCccceEE
Q 016838 362 DPQRESVT---K-GGICNNIL 378 (381)
Q Consensus 362 DP~~PtVt---D-~GnvNNVL 378 (381)
||++|... + .|+.|+|.
T Consensus 82 d~~~~~~~y~~~~~g~~n~~~ 102 (696)
T 4aee_A 82 DPDNEEKKCVHTSFFPEYKKC 102 (696)
T ss_dssp CTTCCCEEEEECSSCTTSEEE
T ss_pred CCCCCcccccccCCcccccee
Confidence 88888554 3 58899885
No 5
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=99.20 E-value=2.2e-11 Score=124.32 Aligned_cols=68 Identities=22% Similarity=0.510 Sum_probs=59.8
Q ss_pred cEEEEEEeecCCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCe
Q 016838 289 LEVVEIQYSGDGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 367 (381)
Q Consensus 289 Lk~VTF~W~g~AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~Pt 367 (381)
+..|.|.++..|+.|+|+|+||+|.+. .+|++ .+|.|.+++.||||.|+|||+|||+|..||.+|.
T Consensus 16 ~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~-------------~g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~ 82 (645)
T 4aef_A 16 VAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQ-------------EGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPE 82 (645)
T ss_dssp EEEEEEEEECCSSCEEEEETTTTTCTTSSEEEE-------------CSSEEEEEEEECSEEEEEEEEETTEEECCTTCCC
T ss_pred EEEEEEecCCCCeEEEEEEcCCCCCCCcccceE-------------cCCEEEEEEEeCCceEEEEEEECCeEecCCCCCC
Confidence 357888899889999999999999864 56764 5689999999999999999999999999999986
Q ss_pred ec
Q 016838 368 VT 369 (381)
Q Consensus 368 Vt 369 (381)
..
T Consensus 83 ~~ 84 (645)
T 4aef_A 83 RR 84 (645)
T ss_dssp EE
T ss_pred cc
Confidence 64
No 6
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=98.31 E-value=1.8e-06 Score=73.60 Aligned_cols=71 Identities=25% Similarity=0.578 Sum_probs=54.1
Q ss_pred CCcEEEEEEeec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE--
Q 016838 287 SGLEVVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-- 355 (381)
Q Consensus 287 sgLk~VTF~W~g---~AkeVeVaGS---FNnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV-- 355 (381)
+....|+|+... .++.|+|+|+ +.+|++. ++|.... .+.....|++++.||+| .+||||+|
T Consensus 6 ~~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~--------~~~~~~~W~~~v~lp~~~~~eYKyvi~~ 77 (131)
T 2z0b_A 6 SGPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPEN--------DTGESMLWKATIVLSRGVSVQYRYFKGY 77 (131)
T ss_dssp CCCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECC--------TTCCSSEEEEEEEECTTCCEEEEEEEEE
T ss_pred CCeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccc--------cCCCCCeEEEEEEcCCCCcEEEEEEEEe
Confidence 345789998876 3799999999 8999974 5786531 12367899999999998 59999999
Q ss_pred ------c-C-------eeecCCCC
Q 016838 356 ------D-G-------QWKVDPQR 365 (381)
Q Consensus 356 ------D-G-------eW~~DP~~ 365 (381)
+ | .|...+.+
T Consensus 78 ~~~~~~~~g~~~v~~~~WE~g~~N 101 (131)
T 2z0b_A 78 FLEPKTIGGPCQVIVHKWETHLQP 101 (131)
T ss_dssp EECCCC----CEEEEEEECCSSCC
T ss_pred ecCccccCCccccceeeECCCCCC
Confidence 5 3 68887744
No 7
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*
Probab=98.22 E-value=2.7e-06 Score=82.04 Aligned_cols=80 Identities=21% Similarity=0.207 Sum_probs=63.7
Q ss_pred CcEEEEEEeecC-C-------ceEEEEeeeCCCcc------ccccCCCCCCCccccccccCCCcEEEEEEeCCeeE-EEE
Q 016838 288 GLEVVEIQYSGD-G-------EIVEVAGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTY-EIK 352 (381)
Q Consensus 288 gLk~VTF~W~g~-A-------keVeVaGSFNnW~~------~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~Y-EYK 352 (381)
+.+.|||.|.++ | ++|+|. +++|.. ..+|.|. ...|+|+.++.|++|.| .|.
T Consensus 29 ~~~~vtF~~~~p~a~~~~~~~~~V~~~--~~~~~d~~~~~~~~~m~r~-----------~~~~~W~~t~~l~~~~~~~Y~ 95 (403)
T 3c8d_A 29 EMFEVTFWWRDPQGSEEYSTIKRVWVY--ITGVTDHHQNSQPQSMQRI-----------AGTDVWQWTTQLNANWRGSYC 95 (403)
T ss_dssp SEEEEEEEEECTTCSTTTCCCCEEEEE--ETTTC-------CCBCEEC-----------TTSSEEEEEEEEETTCEEEEE
T ss_pred CcEEEEEEeeCCCcccccCccceEEEE--CcCCCccccccCccccccC-----------CCCCeEEEEEEECCCcEEEEE
Confidence 457999999987 5 789998 344332 2368773 36899999999999999 999
Q ss_pred EEEc------------------------CeeecCCCCCeecc-C-CccceEEEe
Q 016838 353 FIVD------------------------GQWKVDPQRESVTK-G-GICNNILRV 380 (381)
Q Consensus 353 FIVD------------------------GeW~~DP~~PtVtD-~-GnvNNVL~V 380 (381)
|+|| |..+.||.||.... . |...|+++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~ 149 (403)
T 3c8d_A 96 FIPTERDDIFSAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEM 149 (403)
T ss_dssp EEEESCCSTTCCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEEC
T ss_pred EEecCcccccccccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccC
Confidence 9999 78899999998774 4 777788875
No 8
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=97.96 E-value=5.3e-06 Score=67.56 Aligned_cols=75 Identities=27% Similarity=0.509 Sum_probs=55.9
Q ss_pred CcEEEEEEeecC---CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEc--
Q 016838 288 GLEVVEIQYSGD---GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVD-- 356 (381)
Q Consensus 288 gLk~VTF~W~g~---AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIVD-- 356 (381)
+...|+|..... ++.|+|+|+. .+|++. ++|.... .+.+++.|++++.||+| .+||||+|.
T Consensus 5 ~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~v~~~ 76 (108)
T 1ac0_A 5 TAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADK--------YTSSDPLWYVTVTLPAGESFEYKFIRIES 76 (108)
T ss_dssp CCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSS--------SSSSCSSCEEEECCCSSSCEECCCEECCS
T ss_pred CeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccc--------cCCcCCeEEEEEEeCCCCeEEEEEEEEcC
Confidence 446788887663 8999999986 589964 5787531 11256899999999998 599999993
Q ss_pred -C--eeecCCCCCeecc
Q 016838 357 -G--QWKVDPQRESVTK 370 (381)
Q Consensus 357 -G--eW~~DP~~PtVtD 370 (381)
| .|..+|+.-....
T Consensus 77 ~g~~~WE~g~nR~~~~p 93 (108)
T 1ac0_A 77 DDSVEWESDPNREYTVP 93 (108)
T ss_dssp SSCCCCCCSSCCEECCC
T ss_pred CCCEEeccCCCEEEECC
Confidence 4 5888887765554
No 9
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=97.67 E-value=0.00012 Score=74.92 Aligned_cols=68 Identities=24% Similarity=0.357 Sum_probs=53.2
Q ss_pred EEEEEEeecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---cCee--ec
Q 016838 290 EVVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW--KV 361 (381)
Q Consensus 290 k~VTF~W~g~-AkeVeVaGSFNnW~~-~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIV---DGeW--~~ 361 (381)
..|+|+..++ |+.|.|.|+|++|.. .++|.+. ...|+|++++. +.+|.+ |+|.| ||.+ ..
T Consensus 25 ~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~-----------~~~GvW~~~v~~~~~g~~-Y~f~i~~~~g~~~~~~ 92 (617)
T 1m7x_A 25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-----------KESGIWELFIPGAHNGQL-YKYEMIDANGNLRLKS 92 (617)
T ss_dssp EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-----------TTTTEEEEEEETCCTTCE-EEEEEECTTSCEEEEC
T ss_pred CcEEEEEECCCCCEEEEEEEeCCCCCceeEeEEC-----------CCCCEEEEEEcCCCCCCE-EEEEEEcCCCcEEEec
Confidence 5789976665 999999999999975 4688863 25799999997 788875 99999 6775 67
Q ss_pred CCCCCeec
Q 016838 362 DPQRESVT 369 (381)
Q Consensus 362 DP~~PtVt 369 (381)
||-...+.
T Consensus 93 DPya~~~~ 100 (617)
T 1m7x_A 93 DPYAFEAQ 100 (617)
T ss_dssp CTTCSSEE
T ss_pred Cccceeec
Confidence 88766544
No 10
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=97.50 E-value=0.00016 Score=76.67 Aligned_cols=69 Identities=26% Similarity=0.343 Sum_probs=53.2
Q ss_pred cEEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---cCee--e
Q 016838 289 LEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW--K 360 (381)
Q Consensus 289 Lk~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIV---DGeW--~ 360 (381)
..-|+|+..++ |+.|.|+|+||+|+.. .+|.+. ...|+|.+.+. +.+|. .|||.| ||+| +
T Consensus 135 ~~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~ 202 (722)
T 3k1d_A 135 VSGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVL-----------GPSGVWELFWPDFPCDG-LYKFRVHGADGVVTDR 202 (722)
T ss_dssp EEEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEEC-----------GGGCEEEEEEETCCTTC-EEEEEEECTTSCEEEE
T ss_pred CceEEEEEECCCCCEEEEEeecCCCCCCcccCEEc-----------CCCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEe
Confidence 35688976665 9999999999999864 678763 24699999996 88885 588888 5664 6
Q ss_pred cCCCCCeec
Q 016838 361 VDPQRESVT 369 (381)
Q Consensus 361 ~DP~~PtVt 369 (381)
.||-...+.
T Consensus 203 ~DPya~~~~ 211 (722)
T 3k1d_A 203 ADPFAFGTE 211 (722)
T ss_dssp CCTTCSSBC
T ss_pred ecccceeec
Confidence 788776554
No 11
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A
Probab=97.32 E-value=0.00032 Score=74.35 Aligned_cols=65 Identities=18% Similarity=0.354 Sum_probs=49.8
Q ss_pred EEEEEeecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-------eCCeeEEEEEEEcC---e
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVDG---Q 358 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~~-~IpM~Kd~~~~~~a~~~skesGvFsttL~-------LpPG~YEYKFIVDG---e 358 (381)
.|+|+..++ |+.|.|+|+||+|.. .++|.+. ..|+|.+.+. +++|.+ |||.|+| .
T Consensus 66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~------------~~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~ 132 (755)
T 3aml_A 66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKD------------KFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGA 132 (755)
T ss_dssp EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEEC------------TTSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCC
T ss_pred eEEEEEECCCCCEEEEEEecCCCCCceeeceeC------------CCCEEEEEEcccccccCCCCCCE-EEEEEECCCCc
Confidence 688866554 999999999999975 3678763 5799999998 688875 8998864 5
Q ss_pred e--ecCCCCCee
Q 016838 359 W--KVDPQRESV 368 (381)
Q Consensus 359 W--~~DP~~PtV 368 (381)
| +.||-...+
T Consensus 133 ~~~~~dpya~~~ 144 (755)
T 3aml_A 133 WVDRIPAWIRYA 144 (755)
T ss_dssp CEEECCTTCSCE
T ss_pred EEecCCcchheE
Confidence 5 347755544
No 12
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=96.35 E-value=0.0036 Score=65.91 Aligned_cols=55 Identities=9% Similarity=0.118 Sum_probs=43.5
Q ss_pred EEEEEeecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eC------CeeEEEEEEEcC
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LY------PGTYEIKFIVDG 357 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~~-----~IpM~Kd~~~~~~a~~~skesGvFsttL~-Lp------PG~YEYKFIVDG 357 (381)
.|+|+..++ |+.|.|.+ |++|.. .++|.+. ..|+|.+.+. +. +|.|.|+|.|+|
T Consensus 17 ~~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g 83 (750)
T 1bf2_A 17 NITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPA------------GSGVWAVTVPVSSIKAAGITGAVYYGYRAWG 83 (750)
T ss_dssp EEEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEEC------------STTEEEEEEEHHHHHHTTCCSCCEEEEEEEB
T ss_pred EEEEEEECCCCCEEEEEE-EccCCCCccceEEecccC------------CCCEEEEEECCcccccccCCCCEEEEEEEEe
Confidence 388976655 99999998 987653 3567652 5699999986 66 999999999997
Q ss_pred e
Q 016838 358 Q 358 (381)
Q Consensus 358 e 358 (381)
.
T Consensus 84 ~ 84 (750)
T 1bf2_A 84 P 84 (750)
T ss_dssp T
T ss_pred e
Confidence 5
No 13
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=96.19 E-value=0.014 Score=60.41 Aligned_cols=70 Identities=21% Similarity=0.392 Sum_probs=52.8
Q ss_pred cEEEEEEeec-----CCceEEEEeeeC---CCcc--------cc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEE
Q 016838 289 LEVVEIQYSG-----DGEIVEVAGSFN---GWHH--------RI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYE 350 (381)
Q Consensus 289 Lk~VTF~W~g-----~AkeVeVaGSFN---nW~~--------~I-pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YE 350 (381)
...|+|+... .++.|+|+|+-. +|++ .+ +|.. .....|++++.||+| .+|
T Consensus 581 ~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~------------~~~~~W~~~v~l~~~~~~e 648 (686)
T 1qho_A 581 QTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLA------------PNYPDWFYVFSVPAGKTIQ 648 (686)
T ss_dssp EEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBC------------TTTTSEEEEEEEETTCEEE
T ss_pred eEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhccccc------------CCCCcEEEEEEeCCCCeEE
Confidence 4678887765 478999999984 8987 23 4432 356899999999998 599
Q ss_pred EEEEE---cC--eeecCCCCCeecc
Q 016838 351 IKFIV---DG--QWKVDPQRESVTK 370 (381)
Q Consensus 351 YKFIV---DG--eW~~DP~~PtVtD 370 (381)
|||+| +| .|...|+.-...+
T Consensus 649 yKy~~~~~~~~~~We~~~nr~~~~~ 673 (686)
T 1qho_A 649 FKFFIKRADGTIQWENGSNHVATTP 673 (686)
T ss_dssp EEEEEECTTSCEEECCSSCEEEECC
T ss_pred EEEEEEcCCCCEEeCCCCCeeEECC
Confidence 99999 34 4888877665554
No 14
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=96.13 E-value=0.0041 Score=62.95 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=50.1
Q ss_pred EEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCe-eecCCCCCe
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-WKVDPQRES 367 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGe-W~~DP~~Pt 367 (381)
.|+|+..++ |+.|.|.|.|+ ..++|.+. ..|+|.+.+. +.+|. .|+|.|||. ...||....
T Consensus 10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~------------~~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~ 73 (558)
T 3vgf_A 10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERD------------EKGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRY 73 (558)
T ss_dssp EEEEEEECTTCSCCEEEETTT---EEEECEEC------------TTCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSC
T ss_pred cEEEEEECCCCCEEEEEEecC---ceeecccC------------CCCEEEEEECCCCCCC-EEEEEEeCCccccCcchhh
Confidence 578876665 99999999987 56889874 5799999996 88895 699999997 888997654
No 15
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=96.09 E-value=0.022 Score=58.78 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=54.7
Q ss_pred CcEEEEEEeec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-
Q 016838 288 GLEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV- 355 (381)
Q Consensus 288 gLk~VTF~W~g----~AkeVeVaGSFN---nW~~~--I-pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV- 355 (381)
+...|+|+... .++.|+|+|+-. +|++. + +|... .+.....|++++.||.| .+||||++
T Consensus 578 ~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~---------~~~~~~~W~~~v~lp~~~~~eyK~v~~ 648 (680)
T 1cyg_A 578 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQ---------VVYSYPTWYIDVSVPEGKTIEFKFIKK 648 (680)
T ss_dssp CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCS---------SSSCTTCEEEEEEEESSCEEEEEEEEE
T ss_pred CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccc---------cCCCCCcEEEEEEeCCCCcEEEEEEEE
Confidence 34678888865 389999999875 99874 4 56541 01256899999999988 79999998
Q ss_pred --cC--eeecCCCCCeecc
Q 016838 356 --DG--QWKVDPQRESVTK 370 (381)
Q Consensus 356 --DG--eW~~DP~~PtVtD 370 (381)
+| .|...++.-....
T Consensus 649 ~~~~~~~WE~g~Nr~~~~~ 667 (680)
T 1cyg_A 649 DSQGNVTWESGSNHVYTTP 667 (680)
T ss_dssp CTTSCEEECCSSCEEEECC
T ss_pred eCCCCeEeCCCCCeeEECC
Confidence 34 4887776655554
No 16
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}
Probab=95.99 E-value=0.0088 Score=61.94 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=43.2
Q ss_pred EEEEEeecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCe
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ 358 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~--~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGe 358 (381)
.|+|+..++ |+.|.|.+ |+++. ..++|.+. ..|+|.+.+. +.+|.+ |+|.|+|.
T Consensus 20 g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~------------~~g~w~~~v~~~~~g~~-Y~y~v~~~ 77 (657)
T 2wsk_A 20 GVNFTLFSAHAERVELCV-FDANGQEHRYDLPGH------------SGDIWHGYLPDARPGLR-YGYRVHGP 77 (657)
T ss_dssp EEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEE------------ETTEEEEEEETCCTTCE-EEEEEECC
T ss_pred eEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCC------------CCCEEEEEECCCCCCCE-EEEEEeee
Confidence 588976655 99999999 98765 35788752 5699999985 788987 99999983
No 17
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=95.93 E-value=0.029 Score=58.24 Aligned_cols=73 Identities=27% Similarity=0.487 Sum_probs=53.3
Q ss_pred EEEEEEeec---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC
Q 016838 290 EVVEIQYSG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 357 (381)
Q Consensus 290 k~VTF~W~g---~AkeVeVaGSFN---nW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DG 357 (381)
..|+|.... .++.|+|+|+-. +|++. ++|... ..+..+..|++++.||+| .+||||+| +|
T Consensus 497 v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~--------~~t~~~~~W~~~v~lp~~~~~eYKyvv~~~~g 568 (599)
T 2vn4_A 497 VAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAV--------NYADNHPLWIGTVNLEAGDVVEYKYINVGQDG 568 (599)
T ss_dssp EEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCT--------TCBTTBCEEEEEEEEETTCEEEEEEEEECTTC
T ss_pred EEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccc--------cCCCCCCcEEEEEEcCCCCcEEEEEEEECCCC
Confidence 568888766 389999999874 89863 678753 111235799999999998 59999999 34
Q ss_pred --eeecCCCCCeecc
Q 016838 358 --QWKVDPQRESVTK 370 (381)
Q Consensus 358 --eW~~DP~~PtVtD 370 (381)
.|...|+.-...+
T Consensus 569 ~~~WE~g~NR~~~~p 583 (599)
T 2vn4_A 569 SVTWESDPNHTYTVP 583 (599)
T ss_dssp CEEECCSSCEEEECC
T ss_pred ceEeCCCCCEEEecC
Confidence 3877776655544
No 18
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=95.89 E-value=0.0082 Score=61.64 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=49.1
Q ss_pred EEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCeec
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT 369 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~PtVt 369 (381)
.|+|+..++ |+.|.|.|. ...++|.+. ..|+|.+.+.+.+|.+ |+|.|||....||....+.
T Consensus 35 ~~~f~vwap~a~~v~l~~~----~~~~~m~~~------------~~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~~ 97 (602)
T 2bhu_A 35 GTRFRLWTSTARTVAVRVN----GTEHVMTSL------------GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP 97 (602)
T ss_dssp CEEEEEECSSCSSEEEEET----TEEEECEEE------------ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred eEEEEEECCCCCEEEEEEc----CCEEeCeeC------------CCcEEEEEEECCCCcE-EEEEECCeEecCCCccccC
Confidence 688866555 999999994 245789763 5799999999889986 9999999777888776543
No 19
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Probab=95.85 E-value=0.011 Score=61.91 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=42.9
Q ss_pred EEEEEeecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCee
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 359 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~-----~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGeW 359 (381)
.|+|+..++ |+.|.|.+ |+.+. ..++|.+. ..|+|.+.+. +.+|.+ |+|.|+|.|
T Consensus 30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~v~g~~ 91 (718)
T 2vr5_A 30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNK------------TGDIWHVFVPGLRPGQL-YAYRVYGPY 91 (718)
T ss_dssp EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEE------------SSSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccC------------CCCEEEEEeCCCCCCCE-EEEEEeeec
Confidence 588976655 99999999 87654 24678752 5799999985 789987 999999853
No 20
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=95.71 E-value=0.023 Score=47.41 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=51.2
Q ss_pred EEEEEEeecCCceEEEEeeeC--CCccc--cccCCCCCCCccccccccCCCcE-EEEEEeCCe-eEEEEEEEcCe--eec
Q 016838 290 EVVEIQYSGDGEIVEVAGSFN--GWHHR--IKMDPLPSSSIIEPIRSRKSRLW-STVLWLYPG-TYEIKFIVDGQ--WKV 361 (381)
Q Consensus 290 k~VTF~W~g~AkeVeVaGSFN--nW~~~--IpM~Kd~~~~~~a~~~skesGvF-sttL~LpPG-~YEYKFIVDGe--W~~ 361 (381)
..|+|.|..++++|+|...+. +|... ++|.+. .-..| +.++.|+.| .++|+|. ||. |-.
T Consensus 5 ~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~------------~~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDN 71 (104)
T 2laa_A 5 NKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDA------------EISGYAKITVDIGSASQLEAAFN-DGNNNWDS 71 (104)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEE------------TTTTEEEEEEECTTCSCEEEEEE-CSSSCEES
T ss_pred CEEEEEEcCCCCcEEEEEcCCCCCCCcCCccccccc------------cCCCeEEEEEECCCCCEEEEEEe-CCCCcCcC
Confidence 578899988899999999984 89874 578652 21247 699999976 8999995 874 998
Q ss_pred CCCCCeec
Q 016838 362 DPQRESVT 369 (381)
Q Consensus 362 DP~~PtVt 369 (381)
++..-+..
T Consensus 72 n~g~Nyt~ 79 (104)
T 2laa_A 72 NNTKNYSF 79 (104)
T ss_dssp TTTSCEEE
T ss_pred CCCccEEe
Confidence 87765443
No 21
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=95.52 E-value=0.029 Score=58.04 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=53.0
Q ss_pred cEEEEEEeec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEcC
Q 016838 289 LEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDG 357 (381)
Q Consensus 289 Lk~VTF~W~g----~AkeVeVaGSFN---nW~~~--I-pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIVDG 357 (381)
...|+|+... .++.|+|+|+-. +|++. + +|... .+.....|++++.||+| .+||||++=.
T Consensus 583 ~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~---------~~~~~~~W~~~v~lp~~~~~eyK~~~~~ 653 (683)
T 3bmv_A 583 QICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQ---------VVYQYPTWYYDVSVPAGTTIQFKFIKKN 653 (683)
T ss_dssp EEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCS---------SSSCTTSEEEEEEEETTCEEEEEEEEES
T ss_pred eEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccc---------CCCCCCcEEEEEEeCCCCcEEEEEEEEc
Confidence 4678888865 389999999885 99863 5 66541 01256899999999988 7999999831
Q ss_pred ----eeecCCCCCeecc
Q 016838 358 ----QWKVDPQRESVTK 370 (381)
Q Consensus 358 ----eW~~DP~~PtVtD 370 (381)
.|...++.-...+
T Consensus 654 ~~~~~WE~g~Nr~~~~~ 670 (683)
T 3bmv_A 654 GNTITWEGGSNHTYTVP 670 (683)
T ss_dssp SSCCEECCSSCEEEECC
T ss_pred CCceEecCCCCeeEECC
Confidence 4766665544444
No 22
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=95.24 E-value=0.04 Score=56.98 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=52.3
Q ss_pred cEEEEEEeec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEc-
Q 016838 289 LEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVD- 356 (381)
Q Consensus 289 Lk~VTF~W~g----~AkeVeVaGSFN---nW~~~--I-pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIVD- 356 (381)
...|+|+... .++.|+|+|+-. +|++. + +|... .+.....|++++.||.| .+||||++=
T Consensus 586 ~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~---------~~~~~~~W~~~v~lp~~~~~eyK~~~~~ 656 (686)
T 1d3c_A 586 QVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQ---------VVYQYPNWYYDVSVPAGKTIEFKFLKKQ 656 (686)
T ss_dssp EEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCS---------SSSCTTCEEEEEEEETTCEEEEEEEEEE
T ss_pred eEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccc---------cCCCCCeEEEEEEeCCCCcEEEEEEEEc
Confidence 4678888865 389999999875 99874 4 56541 01256899999999988 799999982
Q ss_pred -C--eeecCCCCCeecc
Q 016838 357 -G--QWKVDPQRESVTK 370 (381)
Q Consensus 357 -G--eW~~DP~~PtVtD 370 (381)
+ .|...++.-...+
T Consensus 657 ~~~~~WE~g~Nr~~~~~ 673 (686)
T 1d3c_A 657 GSTVTWEGGSNHTFTAP 673 (686)
T ss_dssp TTEEEECCSSCEEEECC
T ss_pred CCceEecCCCCeEEECC
Confidence 2 3666665544443
No 23
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=94.87 E-value=0.034 Score=58.08 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=48.8
Q ss_pred EEEEEeecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc--Cee--ecCC
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD--GQW--KVDP 363 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~~-~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVD--GeW--~~DP 363 (381)
.|+|+..++ |+.|.|.+.|++|.. .++|.+. ..|+|.+.+. +.+|. .|+|.|+ |.| ..||
T Consensus 114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~------------~~g~w~~~v~~~~~g~-~Y~f~v~~~g~~~~~~DP 180 (718)
T 2e8y_A 114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRL------------EKGVYAVTVTGDLHGY-EYLFCICNNSEWMETVDQ 180 (718)
T ss_dssp EEEEEEECTTCSEEEEEEECTTSCCEEEECEEC------------GGGEEEEEEESCCTTC-EEEEEEEETTEEEEECCT
T ss_pred cEEEEEECCCCCEEEEEEEcCCCcceEEeCccC------------CCCEEEEEECCCCCCC-eEEEEEEeCCeEEEecCC
Confidence 688976665 999999999998864 4789864 4699999987 46663 4667665 764 5688
Q ss_pred CCCeec
Q 016838 364 QRESVT 369 (381)
Q Consensus 364 ~~PtVt 369 (381)
....+.
T Consensus 181 ya~~~~ 186 (718)
T 2e8y_A 181 YAKAVT 186 (718)
T ss_dssp TCSSBC
T ss_pred cccccc
Confidence 776544
No 24
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=94.63 E-value=0.042 Score=55.66 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=42.6
Q ss_pred EEEEEE-eecCCceEEE-EeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc
Q 016838 290 EVVEIQ-YSGDGEIVEV-AGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD 356 (381)
Q Consensus 290 k~VTF~-W~g~AkeVeV-aGSFNnW~~----~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVD 356 (381)
..+.|+ |...+++|.| .|+|++|+. .++|.+.. .+...|+|++++......+.|||.|.
T Consensus 23 ~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~--------~~~~~~~w~~~i~~~~~~~~Y~f~i~ 87 (585)
T 1wzl_A 23 LRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAG--------SDERFDYFEALLECSTKRVKYVFLLT 87 (585)
T ss_dssp EEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEE--------ECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEee--------cCCCEEEEEEEEECCCCeEEEEEEEE
Confidence 455553 3446999999 799999975 46887631 11224679999998777899999995
No 25
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=94.54 E-value=0.075 Score=54.27 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=52.3
Q ss_pred cCC-cEEEEEEeec----CCceEEEEeeeC---CCccc---cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEE
Q 016838 286 LSG-LEVVEIQYSG----DGEIVEVAGSFN---GWHHR---IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKF 353 (381)
Q Consensus 286 Lsg-Lk~VTF~W~g----~AkeVeVaGSFN---nW~~~---IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKF 353 (381)
+++ ...|+|.... .|++|+|+|+-. +|++. ++|... ..++.|++++.||+| .+||||
T Consensus 415 Vt~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~-----------~~p~~W~~~v~lp~~~~~eYKy 483 (516)
T 1vem_A 415 LGVTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYD-----------SHSNDWRGNVVLPAERNIEFKA 483 (516)
T ss_dssp TSCCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEE-----------TTTTEEEEEEEEETTCCEEEEE
T ss_pred cccCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccC-----------CCCCEEEEEEEECCCCcEEEEE
Confidence 444 4788898764 389999999884 89874 245421 234599999999988 599999
Q ss_pred EE-c--C---eeecCCCCCeecc
Q 016838 354 IV-D--G---QWKVDPQRESVTK 370 (381)
Q Consensus 354 IV-D--G---eW~~DP~~PtVtD 370 (381)
+| | | .|...++.-...+
T Consensus 484 v~~~~~g~v~~WE~g~NR~~~~p 506 (516)
T 1vem_A 484 FIKSKDGTVKSWQTIQQSWNPVP 506 (516)
T ss_dssp EEECTTSCEEEECSSCEEESSCC
T ss_pred EEEeCCCCeeEEeCCCCEEEecC
Confidence 98 2 3 4777665544443
No 26
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Probab=94.17 E-value=0.048 Score=60.37 Aligned_cols=67 Identities=18% Similarity=0.105 Sum_probs=50.3
Q ss_pred EEEEEeecC-CceEEEEe-eeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc------Ce--
Q 016838 291 VVEIQYSGD-GEIVEVAG-SFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ-- 358 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaG-SFNnW~~-~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVD------Ge-- 358 (381)
.|+|+..++ |+.|.|.+ +|++|.. .++|.+. ...|+|.+.+. +.+|.| |+|.|+ |.
T Consensus 305 gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~-----------~~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~ 372 (1083)
T 2fhf_A 305 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-----------SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVE 372 (1083)
T ss_dssp EEEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-----------TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEE
T ss_pred eEEEEEECCCCCEEEEEEEcCCCCccceEECeEC-----------CCCCEEEEEECCCCCCCE-EEEEEEeecCCCCccc
Confidence 588976665 99999999 8899975 4688753 25699999985 788876 888885 43
Q ss_pred --eecCCCCCeec
Q 016838 359 --WKVDPQRESVT 369 (381)
Q Consensus 359 --W~~DP~~PtVt 369 (381)
...||....+.
T Consensus 373 ~~~~~DPYa~~~~ 385 (1083)
T 2fhf_A 373 QYEVTDPYAHSLS 385 (1083)
T ss_dssp EEEECCTTCSCBC
T ss_pred cceecCCccceec
Confidence 47788776554
No 27
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=93.98 E-value=0.04 Score=55.88 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=43.2
Q ss_pred cEEEEEE-eecCCceEEE-EeeeCCCcc------ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc
Q 016838 289 LEVVEIQ-YSGDGEIVEV-AGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD 356 (381)
Q Consensus 289 Lk~VTF~-W~g~AkeVeV-aGSFNnW~~------~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVD 356 (381)
..++.|+ |...+++|.| .|+|++|+. .++|.+.. .+...|+|++++......+.|+|.|+
T Consensus 22 ~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~--------~~~~~~~w~~~v~~~~~~~~Y~f~i~ 89 (588)
T 1j0h_A 22 TLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTG--------SDELFDYWFAEVKPPYRRLRYGFVLY 89 (588)
T ss_dssp CEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEE--------ECSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred EEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEee--------cCCCeEEEEEEEECCCcEEEEEEEEE
Confidence 3566665 3446999999 699999964 47888641 11124679999988777889999885
No 28
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=93.34 E-value=0.12 Score=53.47 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=46.9
Q ss_pred EEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEEc-CeeecCCCCCe
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVD-GQWKVDPQRES 367 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL-~LpPG~YEYKFIVD-GeW~~DP~~Pt 367 (381)
.|.|+..++ |+.|.|++ +|. .++|.+. ..|.|.+.+ .+.+|. .|+|.|+ |....||....
T Consensus 43 ~~~F~vwap~a~~v~l~~---~~~-~~~m~~~------------~~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~ 105 (618)
T 3m07_A 43 VVRFRLWATGQQKVMLRL---AGK-DQEMQAN------------GDGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRA 105 (618)
T ss_dssp EEEEEEECTTCSCEEEEE---TTE-EEECEEC------------STTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSC
T ss_pred cEEEEEECCCCCEEEEEE---CCC-cccCeec------------CCEEEEEEeCCCCCCC-EEEEEEeCCeEecccccee
Confidence 578976665 99999998 343 4789864 568999988 478886 5899995 56888998765
Q ss_pred ec
Q 016838 368 VT 369 (381)
Q Consensus 368 Vt 369 (381)
..
T Consensus 106 ~~ 107 (618)
T 3m07_A 106 QK 107 (618)
T ss_dssp BS
T ss_pred ee
Confidence 44
No 29
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A
Probab=93.04 E-value=0.11 Score=53.90 Aligned_cols=66 Identities=17% Similarity=0.081 Sum_probs=45.4
Q ss_pred EEEEEeecC-CceEEEEeeeCCCcccc--ccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCe--------
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWHHRI--KMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-------- 358 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~~~I--pM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGe-------- 358 (381)
.|+|+..++ |+.|.|++-+++|.... .|.+ ...|+|++.+. +.+|.| |+|.|+|.
T Consensus 137 g~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~------------~~~g~W~~~~~~~~~g~~-Y~y~v~~~~~~~~~~~ 203 (884)
T 4aio_A 137 SVSLHLWAPTAQGVSVCFFDGPAGPALETVQLK------------ESNGVWSVTGPREWENRY-YLYEVDVYHPTKAQVL 203 (884)
T ss_dssp EEEEEEECTTCSEEEEEEESTTTSCEEEEEECE------------EETTEEEEEEEGGGTTCE-EEEEEEEEETTTTEEE
T ss_pred EEEEEEECCCCCEEEEEEEeCCCCCeeeeeeec------------CCCCEEEEEECCCCCCCE-EEEEEeCCCCCccccc
Confidence 589976555 99999999656665543 2322 36799999996 677754 88889752
Q ss_pred --eecCCCCCeec
Q 016838 359 --WKVDPQRESVT 369 (381)
Q Consensus 359 --W~~DP~~PtVt 369 (381)
...||....+.
T Consensus 204 ~~~~~DPya~~~~ 216 (884)
T 4aio_A 204 KCLAGDPYARSLS 216 (884)
T ss_dssp EEEECCTTCSEES
T ss_pred CccccCCCeeeec
Confidence 35688665443
No 30
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=93.03 E-value=0.13 Score=53.81 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=47.1
Q ss_pred EEEEeecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEe--CCe-----eEEEEEEEc--C
Q 016838 292 VEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWL--YPG-----TYEIKFIVD--G 357 (381)
Q Consensus 292 VTF~W~g~-AkeVeVaG-SFNnW~~---~IpM~Kd~~~~~~a~~~skesGvFsttL~L--pPG-----~YEYKFIVD--G 357 (381)
|.|+..++ |+.|.|.+ +|++|.. .++|.+. ..|+|.+.+.- .+| -+.|+|.|+ |
T Consensus 26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~ 93 (714)
T 2ya0_A 26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG------------ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQG 93 (714)
T ss_dssp EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC------------GGGEEEEEECTTCSSSCSCCTTCEEEEEEEETT
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccC------------CCCEEEEEECCccCCCccccCCcEEEEEEEeCC
Confidence 88976655 99999999 8888864 4788763 56999998863 134 267888886 6
Q ss_pred e--eecCCCCCee
Q 016838 358 Q--WKVDPQRESV 368 (381)
Q Consensus 358 e--W~~DP~~PtV 368 (381)
. -..||....+
T Consensus 94 ~~~~~~DPya~~~ 106 (714)
T 2ya0_A 94 KTVLALDPYAKSL 106 (714)
T ss_dssp EEEEECCTTCSEE
T ss_pred ceEEecCCceeee
Confidence 4 4579976543
No 31
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=92.97 E-value=0.074 Score=57.67 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=48.9
Q ss_pred EEEEeecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEeCCee-----EEEEEEEcC--e-
Q 016838 292 VEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGT-----YEIKFIVDG--Q- 358 (381)
Q Consensus 292 VTF~W~g~-AkeVeVaG-SFNnW~~---~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~-----YEYKFIVDG--e- 358 (381)
|.|+..++ |+.|+|.+ ++++|.. .++|.+. ..|+|.+.+.+.||. +.|+|.|++ .
T Consensus 146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~ 213 (877)
T 3faw_A 146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKN------------NKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDK 213 (877)
T ss_dssp EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEEC------------TTSEEEEEECGGGTCSCCTTCEEEEEEEETTEE
T ss_pred EEEEEECCCCCEEEEEEEeCCCCccceeeeccccC------------CCCEEEEEECCCCCCccCCCeEEEEEEeeCCce
Confidence 88977665 99999998 6778853 5788763 679999999766662 678888863 3
Q ss_pred -eecCCCCCee
Q 016838 359 -WKVDPQRESV 368 (381)
Q Consensus 359 -W~~DP~~PtV 368 (381)
...||-...+
T Consensus 214 ~~~~DPYA~~~ 224 (877)
T 3faw_A 214 VKILDPYAKSL 224 (877)
T ss_dssp EEECCTTCSCB
T ss_pred eEecCccceec
Confidence 5678887544
No 32
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=92.29 E-value=0.17 Score=54.82 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=46.8
Q ss_pred EEEEEeecC-CceEEEEeeeCCCc----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE--cCe--ee
Q 016838 291 VVEIQYSGD-GEIVEVAGSFNGWH----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV--DGQ--WK 360 (381)
Q Consensus 291 ~VTF~W~g~-AkeVeVaGSFNnW~----~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIV--DGe--W~ 360 (381)
.|+|+..++ |+.|.|.+ |++|. ..++|.+. ..|+|.+.+. +.+|.+ |+|.| +|. ..
T Consensus 326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~y~v~~~g~~~~~ 391 (921)
T 2wan_A 326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKS------------DNGTWKLQVSGNLENWY-YLYQVTVNGTTQTA 391 (921)
T ss_dssp EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEEC------------GGGEEEEEEESCCTTCE-EEEEEECSSCEEEE
T ss_pred eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeC------------CCCEEEEEEccCCCCCE-EEEEEEeCCeEEEe
Confidence 688877665 99999997 99994 34788763 4699999986 567753 77776 565 45
Q ss_pred cCCCCCee
Q 016838 361 VDPQRESV 368 (381)
Q Consensus 361 ~DP~~PtV 368 (381)
.||-...+
T Consensus 392 ~DPya~~~ 399 (921)
T 2wan_A 392 VDPYARAI 399 (921)
T ss_dssp CCTTCSSB
T ss_pred cCCcceee
Confidence 68876543
No 33
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=91.71 E-value=0.032 Score=55.81 Aligned_cols=70 Identities=20% Similarity=0.411 Sum_probs=0.0
Q ss_pred cEEEEEEe-ec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-c-
Q 016838 289 LEVVEIQY-SG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D- 356 (381)
Q Consensus 289 Lk~VTF~W-~g---~AkeVeVaGSFN---nW~~--~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV-D- 356 (381)
...|+|+. .. .++.|+|+|+-. +|++ .++|... .....|++++.||+| .+||||+| |
T Consensus 430 ~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~-----------~~~~~W~~~v~lp~~~~~eyKy~~~~~ 498 (527)
T 1gcy_A 430 LVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDT-----------SGYPTWKGSIALPAGQNEEWKCLIRNE 498 (527)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccC-----------CCCCeEEEEEEeCCCCcEEEEEEEEeC
Confidence 35677776 33 389999999885 8987 3677521 246789999999999 59999997 3
Q ss_pred -C-----eeecCCCCCeec
Q 016838 357 -G-----QWKVDPQRESVT 369 (381)
Q Consensus 357 -G-----eW~~DP~~PtVt 369 (381)
| .|...|+.-...
T Consensus 499 ~~~~~~~~We~g~nr~~~~ 517 (527)
T 1gcy_A 499 ANATQVRQWQGGANNSLTP 517 (527)
T ss_dssp -------------------
T ss_pred CCCcceeEecCCCCeeEEC
Confidence 3 376666554443
No 34
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A
Probab=90.01 E-value=0.14 Score=52.40 Aligned_cols=60 Identities=10% Similarity=0.129 Sum_probs=41.4
Q ss_pred EEEEEEee----c-CCceEEEEeeeCCCccccccCC--CCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcC
Q 016838 290 EVVEIQYS----G-DGEIVEVAGSFNGWHHRIKMDP--LPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG 357 (381)
Q Consensus 290 k~VTF~W~----g-~AkeVeVaGSFNnW~~~IpM~K--d~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDG 357 (381)
..|+|+.. + .++.|.|.+.|++-...++|.+ .. .+...|+|++.+........|+|.|+|
T Consensus 30 ~~v~f~v~~~~~ap~a~~V~l~~~~~~~~~~~~m~~~~~~--------~~~~~~~w~~~i~~~~~g~~Y~f~i~~ 96 (637)
T 1ji1_A 30 QSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSND--------PTGTFDYWKGTIPASPSIKYYRFQIND 96 (637)
T ss_dssp CCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEEC--------TTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred CEEEEEEEEecCcCCeeEEEEEEecCCCEEEEEeEEeecc--------ccCCeeEEEEEEECCCceEEEEEEEEE
Confidence 35778655 4 4899999999875223478876 21 112458999999866566779999975
No 35
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=89.38 E-value=0.092 Score=53.25 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=41.6
Q ss_pred EEEEEE-eecCCceEEE-EeeeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc
Q 016838 290 EVVEIQ-YSGDGEIVEV-AGSFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD 356 (381)
Q Consensus 290 k~VTF~-W~g~AkeVeV-aGSFNnW~~---~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVD 356 (381)
..+.|+ |...+++|.| .|+|++|+. .++|.+.. .+...|+|++.+......+.|||.|.
T Consensus 23 ~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~--------~~~~~~~w~~~i~~~~~~~~Y~f~i~ 86 (583)
T 1ea9_C 23 VHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLA--------TDELFDYWECEVTPPYRRVKYGFLLQ 86 (583)
T ss_dssp EECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEE--------ECSSCEEECCEECCTTSCEEECBCCE
T ss_pred EEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEe--------ccCCeEEEEEEEECCCceEEEEEEEE
Confidence 445554 4446899999 799999975 46898641 11234679999987777788888874
No 36
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=89.33 E-value=0.49 Score=51.24 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=38.5
Q ss_pred ecCCceEEEEeee-------CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeee
Q 016838 297 SGDGEIVEVAGSF-------NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK 360 (381)
Q Consensus 297 ~g~AkeVeVaGSF-------NnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~ 360 (381)
......+.+.|+| .+|.+.-.... .....+|.|+.+-.||+|.||||+.++|.|.
T Consensus 160 ~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~---------~~~~~~~~y~~~~~l~~g~y~~kv~~~~~w~ 221 (921)
T 2wan_A 160 SANPVTAVLVGDLQQALGAANNWSPDDDHTL---------LKKINPNLYQLSGTLPAGTYQYKIALDHSWN 221 (921)
T ss_dssp ECCCCCEEEEETTSGGGTCSSSSCTTCGGGB---------CEEEETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred cccccccccccchhhhccccccCCCCCCcce---------eeccCCcceeeeeccCCcceeEEEeecCccc
Confidence 3345678888876 46776422110 1112478999999999999999999998874
No 37
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=88.27 E-value=0.45 Score=52.14 Aligned_cols=64 Identities=19% Similarity=0.306 Sum_probs=45.9
Q ss_pred EEEEeecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEeC--Ce-----eEEEEEEEc--C
Q 016838 292 VEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PG-----TYEIKFIVD--G 357 (381)
Q Consensus 292 VTF~W~g~-AkeVeVaG-SFNnW~~---~IpM~Kd~~~~~~a~~~skesGvFsttL~Lp--PG-----~YEYKFIVD--G 357 (381)
|.|+..++ |+.|.|++ +|++|.. .++|.+. ..|+|.+.+.-. +| -+.|+|.|+ |
T Consensus 333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~ 400 (1014)
T 2ya1_A 333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG------------ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQG 400 (1014)
T ss_dssp EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC------------GGGEEEEEECTTCSSCCSCCTTCEEEEEEEETT
T ss_pred EEEEEECCCCCEEEEEEEECCCCCccceEEecccC------------CCCEEEEEEcccccCCccccCCcEEEEEEEeCC
Confidence 78976665 99999999 8888864 4788763 569999988631 23 266888886 5
Q ss_pred e--eecCCCCCe
Q 016838 358 Q--WKVDPQRES 367 (381)
Q Consensus 358 e--W~~DP~~Pt 367 (381)
. ...||-...
T Consensus 401 ~~~~~~DPYa~~ 412 (1014)
T 2ya1_A 401 KTVLALDPYAKS 412 (1014)
T ss_dssp EEEEECCTTCSS
T ss_pred eEEEecCcccee
Confidence 4 467886543
No 38
>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}
Probab=77.53 E-value=1.5 Score=39.27 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=38.8
Q ss_pred CceEEEEeeeCCCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeee
Q 016838 300 GEIVEVAGSFNGWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK 360 (381)
Q Consensus 300 AkeVeVaGSFNnW~~--~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~ 360 (381)
.++++|+|++++|.. ..+|.+.. ...|.|...+.|+.|. +|||.-+..|-
T Consensus 12 p~~lY~vG~~~gW~~~~~~~m~~~~----------~~~g~y~~~~yl~ag~-~fKf~~~~~~~ 63 (221)
T 4fch_A 12 PKTMFIVGSMLDTDWKVWKPMAGVY----------GMDGQFYSMIYFDANS-EFKFGTKENEY 63 (221)
T ss_dssp CSCCEEEETTTCTTSCCEEECEECT----------TCTTEEEEEEEECTTE-EEEEESSTTCC
T ss_pred cceEEEEecCCCCCCCccceeeecc----------CCCceEEEEEEEcCCC-eEEEeeccCcc
Confidence 688999999998863 35676541 2579999999998774 89999886654
No 39
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=74.10 E-value=6.2 Score=32.66 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=46.7
Q ss_pred EEEEEEeecCCceEEEEeeeC--CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEcC--eeecC
Q 016838 290 EVVEIQYSGDGEIVEVAGSFN--GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDG--QWKVD 362 (381)
Q Consensus 290 k~VTF~W~g~AkeVeVaGSFN--nW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIVDG--eW~~D 362 (381)
..|++-|..++..|+|-=.+. +|... ++|.+. .-.|.|..++.|+.+ .++|+| -|| .|-.+
T Consensus 10 ~~vTvyY~sg~~~~ylHy~~~~g~Wt~vpgv~M~~~-----------~~~Gw~~~TI~~~~~~~l~~~F-~dG~~~WDNN 77 (102)
T 2c3v_A 10 TDITIYYKTGWTHPHIHYSLNQGAWTTLPGVPLTKS-----------EXEGXVKVTIEAEEGSQLRAAF-NNGSGQWDNN 77 (102)
T ss_dssp CSEEEEEECCCSSCEEEEEETTCCBCCTTCEECEEC-----------SSTTEEEEEECCCTTCEEEEEE-ECSSSCEECG
T ss_pred CEEEEEEcCCCCcEEEEEeCCCCCcccCCCcCcccc-----------ccCCceEEEEecCCCceEEEEE-eCCCcccccC
Confidence 457777777788888875564 48763 678652 136788999999864 899999 665 48775
Q ss_pred CCCCe
Q 016838 363 PQRES 367 (381)
Q Consensus 363 P~~Pt 367 (381)
...-+
T Consensus 78 ~g~Ny 82 (102)
T 2c3v_A 78 QGRDY 82 (102)
T ss_dssp GGTCE
T ss_pred CCcce
Confidence 54443
No 40
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=58.61 E-value=8.3 Score=31.64 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhHh
Q 016838 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~~el~~h 91 (381)
+.+++.|++.|-.=.|++|. +||.+||++.
T Consensus 17 ~QI~~~i~~~I~~G~l~pG~~LPser~La~~ 47 (134)
T 4ham_A 17 EQIVQKIKEQVVKGVLQEGEKILSIREFASR 47 (134)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCccHHHHHHH
Confidence 67999999999999999996 9999999875
No 41
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=57.26 E-value=9.4 Score=30.59 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhHhc
Q 016838 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHG 92 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~~el~~hg 92 (381)
..+++.|++.|..-.+|+|. +||.+||++.=
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~ 43 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEY 43 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHH
Confidence 57899999999999999986 89999999863
No 42
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding, carbohydrate binding, sugar binding protein; NMR {Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Probab=55.84 E-value=25 Score=29.15 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=42.4
Q ss_pred EEEEEeecC--CceEEEEee--eCCCcc-ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEcCe--eecC
Q 016838 291 VVEIQYSGD--GEIVEVAGS--FNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ--WKVD 362 (381)
Q Consensus 291 ~VTF~W~g~--AkeVeVaGS--FNnW~~-~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIVDGe--W~~D 362 (381)
.-++...+- .+.|.|.=+ ||+|.. .....-.. ....+...-..|...+.||+. .+-.+|.|+|. |-.+
T Consensus 22 ~GtV~V~NlafeK~V~VR~T~~~D~W~t~~~dv~a~y----~~~~~~~~~D~F~F~i~l~~~~eFcIrY~v~g~eyWDNN 97 (106)
T 2djm_A 22 SGKIYVKNIAYSKKVTVVYADGSDNWNNNGNIIAASF----SGPISGSNYEYWTFSASVKGIKEFYIKYEVSGKTYYDNN 97 (106)
T ss_dssp EEEEEECCSSSCEEEEEEEEETTSSCSSCCCEEECEE----EEECTTSSCEEEEEEECCSSEEEEEEEEEESSCEEEECS
T ss_pred EEEEEEeecCcCcEEEEEECCCcCCCccccEEEEEEE----ecCCCCCCeEEEEEEEECCCCeEEEEEEEECCcEEEcCC
Confidence 444445442 688888888 999987 42211000 000112355789999999866 67789999996 5443
No 43
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=53.07 E-value=32 Score=29.75 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=20.3
Q ss_pred EEEEeCCe-eEEEEEEEcCeeecCCCC
Q 016838 340 TVLWLYPG-TYEIKFIVDGQWKVDPQR 365 (381)
Q Consensus 340 ttL~LpPG-~YEYKFIVDGeW~~DP~~ 365 (381)
.++.|..| .|.|+| ++|+|+.+.+.
T Consensus 98 ~svtl~rG~t~~F~y-~~g~Wv~~gd~ 123 (126)
T 4dny_A 98 RKVTLSVGNTLLFKY-VNGQWFRSGEL 123 (126)
T ss_dssp EEEEECTTCEEEEEE-ETTEEEETTCC
T ss_pred cEEEecCCCEEEEEE-cCCEEEEcccc
Confidence 34678888 799999 99999987653
No 44
>4fe9_A Outer membrane protein SUSF; starch binding, IG fold, extracellular surface, outermembran carbohydrate-binding protein; HET: GLC BGC MTT; 2.00A {Bacteroides thetaiotaomicron}
Probab=49.49 E-value=15 Score=35.94 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=34.4
Q ss_pred CceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc
Q 016838 300 GEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD 356 (381)
Q Consensus 300 AkeVeVaGSFNnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVD 356 (381)
....+|+|++++|+.. .+|.++. ...+.|+....+..+. +|||+.-
T Consensus 150 ~~~~YlvG~~~gW~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~fK~~~~ 197 (470)
T 4fe9_A 150 PDGYYIVGDFTGWDGNSAQQMKKDA----------LDENLYILEAEIESTS-NFKIFPA 197 (470)
T ss_dssp TTCEEEEETTTCSSGGGCEECEECS----------SCTTEEEEEEEESSCC-EEEEEEG
T ss_pred cceeEEEcccCCCCcccCeeeeeec----------CCCceEEEEEEeccCc-eEEEeec
Confidence 4679999999999864 3454431 3678999998887666 7999974
No 45
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=49.17 E-value=16 Score=29.73 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHhHhc
Q 016838 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHG 92 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~-~vps~~el~~hg 92 (381)
..+++.|++.|..-.+|+| .+||.+||+++=
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~ 47 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKL 47 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Confidence 5789999999999999888 489999999863
No 46
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=49.10 E-value=18 Score=30.49 Aligned_cols=65 Identities=8% Similarity=0.192 Sum_probs=53.3
Q ss_pred hhhHHHHHHhhh--HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccccc--c-----hHHHHHHHhhcC
Q 016838 223 QLEIDHLKFMLH--QKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISD--K-----DEELIAAEESLS 287 (381)
Q Consensus 223 ~~e~~~l~~m~~--qkele~~~~k~q~~~~K~~ls~lq~k~~~ei~~a~kLl~e--K-----d~~Ld~Ae~aLs 287 (381)
+.+-+++..|-. -.+-++.+..+-+.+++.++-.++.|...++.+-+.+|.+ . ..++.+|++.|.
T Consensus 32 ~~q~~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~~~ee~~~Ak~~l~ 105 (116)
T 3mxz_A 32 EREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVA 105 (116)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHH
Confidence 345566777765 3788999999999999999999999999999999999983 1 458888888764
No 47
>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B; CBM_21 domain, carbohydrate binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.29 E-value=23 Score=31.16 Aligned_cols=70 Identities=11% Similarity=0.257 Sum_probs=45.1
Q ss_pred EEEEEeec--CCceEEEEeeeCCCcccc--ccCCCCCCCccccccccCCCcEEEEEEeCC-----e--eEEEEEEEcCe-
Q 016838 291 VVEIQYSG--DGEIVEVAGSFNGWHHRI--KMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-----G--TYEIKFIVDGQ- 358 (381)
Q Consensus 291 ~VTF~W~g--~AkeVeVaGSFNnW~~~I--pM~Kd~~~~~~a~~~skesGvFsttL~LpP-----G--~YEYKFIVDGe- 358 (381)
.-++...+ -.+.|.|.=+||+|.... ++..... ..+......|..++.||+ + .+-++|.|+|.
T Consensus 49 ~GtV~V~NlafeK~V~VR~T~D~Wkt~~dv~a~y~~~-----~~~~~~~D~F~F~I~lp~~~~~~~~leFcIrY~v~g~e 123 (156)
T 2eef_A 49 AGTVKVQNLAFEKTVKIRMTFDTWKSYTDFPCQYVKD-----TYAGSDRDTFSFDISLPEKIQSYERMEFAVYYECNGQT 123 (156)
T ss_dssp EEEEEECCSSSCCEEEEEEESSTTSSEEEEECEECCC-----SSSCSSSCEEEECCCCCSCCCTTSCCEEEEEEEETTEE
T ss_pred EEEEEEeccCCCcEEEEEEeECCCcccEEEEEEEccc-----cCCCCCceEEEEEEECCCccCCCcEEEEEEEEEeCCCE
Confidence 44444444 279999999999998753 3433211 011123568999998886 2 67789999996
Q ss_pred -eecCCCC
Q 016838 359 -WKVDPQR 365 (381)
Q Consensus 359 -W~~DP~~ 365 (381)
|-.+...
T Consensus 124 yWDNN~G~ 131 (156)
T 2eef_A 124 YWDSNRGK 131 (156)
T ss_dssp EEESGGGS
T ss_pred EecCCCCe
Confidence 6655433
No 48
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.22 E-value=34 Score=28.53 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=50.6
Q ss_pred chhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccchHHHHHHHhh
Q 016838 222 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEES 285 (381)
Q Consensus 222 ~~~e~~~l~~m~~qkele~~~~k~q~~~~K~~ls~lq~k~~~ei~~a~kLl~eKd~~Ld~Ae~a 285 (381)
...||..++..+..-+.|+.-++.+...-...|+-++.+.+.++..++..|.....+|..++..
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQD 97 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4568888888888878887777777666667778888888889999998888887777766654
No 49
>4fe9_A Outer membrane protein SUSF; starch binding, IG fold, extracellular surface, outermembran carbohydrate-binding protein; HET: GLC BGC MTT; 2.00A {Bacteroides thetaiotaomicron}
Probab=43.23 E-value=19 Score=35.19 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=36.8
Q ss_pred CceEEEEeeeCCCccc-------cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCC
Q 016838 300 GEIVEVAGSFNGWHHR-------IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDP 363 (381)
Q Consensus 300 AkeVeVaGSFNnW~~~-------IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP 363 (381)
...++|+|++++|.-. .+|.+. ....+.|.....+..| .+|||.-++.|-.+-
T Consensus 260 ~~~lyivG~~~~wg~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~a~-gefKF~~~~~W~~~~ 319 (470)
T 4fe9_A 260 PTELYMTGSAYNWGTPAGDPNAWKALVPV----------NGTKGTFWGIFYFAAN-DQVKFAPQANWGNDF 319 (470)
T ss_dssp CSCCEEEEGGGGGGCSTTCTTTCEECEEC----------TTCTTEEEEEEEECTT-CEEEEESSSSSSSCB
T ss_pred cceEEEEeecccCCCCCCCcccccccccc----------cCcCceEEEEEEECCC-ceEEEEecCCccccc
Confidence 5679999999988632 122221 1357889888877654 589999998886543
No 50
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.59 E-value=28 Score=29.15 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=43.9
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccchHHHHHHHhh
Q 016838 223 QLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEES 285 (381)
Q Consensus 223 ~~e~~~l~~m~~qkele~~~~k~q~~~~K~~ls~lq~k~~~ei~~a~kLl~eKd~~Ld~Ae~a 285 (381)
..||..++..+..-+.|+..++.+...-...|+-++.+.+.++..++..|.....+|..++..
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e 99 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCE 99 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777666666555566777788888888888888888877777766554
No 51
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=37.29 E-value=13 Score=30.46 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhHh
Q 016838 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~~el~~h 91 (381)
..+++.|++.|..-.||+|. +||.+||+++
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~ 44 (126)
T 3ic7_A 14 LQIADRICDDILLGQYEEEGRIPSVREYASI 44 (126)
T ss_dssp THHHHHHHHHHHTTSSCBTSEECCTTTTTTC
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHH
Confidence 57999999999999999986 7999999976
No 52
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=35.60 E-value=65 Score=26.07 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=34.2
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccchHHHHHHHhhc
Q 016838 224 LEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESL 286 (381)
Q Consensus 224 ~e~~~l~~m~~qkele~~~~k~q~~~~K~~ls~lq~k~~~ei~~a~kLl~eKd~~Ld~Ae~aL 286 (381)
-||++|++=+.--|-|-.|-...+--||+.|+.||- .|..|++++......|
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~-----------qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQE-----------QVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-----------HHHhhHHHHHHHHHHH
Confidence 478888877665555556666777788887766664 4455666665554443
No 53
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=35.39 E-value=20 Score=29.81 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=50.4
Q ss_pred cchhhHHHHHHhhhH---HHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccch--HHHHHHHhhc
Q 016838 221 ENQLEIDHLKFMLHQ---KEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD--EELIAAEESL 286 (381)
Q Consensus 221 ~~~~e~~~l~~m~~q---kele~~~~k~q~~~~K~~ls~lq~k~~~ei~~a~kLl~eKd--~~Ld~Ae~aL 286 (381)
+-+-+-+++..|-.. .+-++.+..+-+++++.++-.++.|...++.+-+.+|.... .++.+|++.|
T Consensus 26 E~~~q~~riek~k~~~~~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~~~~~~ee~~~Ake~l 96 (106)
T 1qsd_A 26 ELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKTYQGTEDVSDARSAI 96 (106)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 334456677777665 68899999999999999999999999999999888885322 3555555544
No 54
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=34.13 E-value=36 Score=28.03 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHhHh
Q 016838 62 EELYNDLREFLSTVGLSES-HVPSMKELSAH 91 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~-~vps~~el~~h 91 (381)
..+++.|++.|-.-.+++| .+||.+||++.
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~ 37 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAF 37 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHH
Confidence 5788999999999999887 58999999975
No 55
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=31.47 E-value=14 Score=28.42 Aligned_cols=14 Identities=36% Similarity=0.847 Sum_probs=11.5
Q ss_pred EcCeeecCCCCCee
Q 016838 355 VDGQWKVDPQRESV 368 (381)
Q Consensus 355 VDGeW~~DP~~PtV 368 (381)
|||+|.+||.-.+.
T Consensus 48 vdgeWsYD~ATkTF 61 (65)
T 1mhx_A 48 VDGEWTYDDAAKTF 61 (65)
T ss_dssp CCSEEEEETTTTEE
T ss_pred CccEEEecCceeEE
Confidence 58999999987654
No 56
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=30.74 E-value=37 Score=26.19 Aligned_cols=31 Identities=16% Similarity=0.408 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCC-CCChHHHhHh
Q 016838 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (381)
Q Consensus 61 ~~~l~~d~~ef~s~~~l~~~~-vps~~el~~h 91 (381)
-..+++.|++.|-.-.|++|. +||.+||+++
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~ 44 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQ 44 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHH
Confidence 467999999999887887665 6999999976
No 57
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=29.32 E-value=36 Score=28.18 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=50.1
Q ss_pred hhhHHHHHHhhhH--HHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccccc-----chHHHHHHHhhcC
Q 016838 223 QLEIDHLKFMLHQ--KEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISD-----KDEELIAAEESLS 287 (381)
Q Consensus 223 ~~e~~~l~~m~~q--kele~~~~k~q~~~~K~~ls~lq~k~~~ei~~a~kLl~e-----Kd~~Ld~Ae~aLs 287 (381)
+-+-+++..|-.. .+-++.+..+-+.+++.+|-..+.|...++.+-+.+|.+ -..++.+|++.|.
T Consensus 31 ~~q~~riek~k~e~~Dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~~e~~~~~~ee~~~Ake~l~ 102 (108)
T 1h7c_A 31 KQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLD 102 (108)
T ss_dssp HHHHHHHHHHHHHHCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCGGGTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Confidence 3445566666542 466888889999999999999999999999999998872 2358888887763
No 58
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=29.28 E-value=45 Score=27.22 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHhcCCCCCC-CCChHHHhHh
Q 016838 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (381)
Q Consensus 61 ~~~l~~d~~ef~s~~~l~~~~-vps~~el~~h 91 (381)
-..+++.|++-|-.-.||+|. +||.+||++.
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~ 44 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQ 44 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHH
Confidence 367899999999999998886 6999999986
No 59
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.01 E-value=29 Score=28.55 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=30.1
Q ss_pred cCCCCCCCCChHHHhHhchhhHHHHHHHhhHHHH
Q 016838 75 VGLSESHVPSMKELSAHGRDDLANIVRRRGYKFI 108 (381)
Q Consensus 75 ~~l~~~~vps~~el~~hgr~dlan~vrrrg~k~i 108 (381)
-|..=..||+|+|-..=..+|+|..+|++||+=+
T Consensus 6 ~~m~~~~~ps~seV~~Wsp~~VadWLkk~g~~~c 39 (90)
T 2eap_A 6 SGMALRNVPFRSEVLGWDPDSLADYFKKLNYKDC 39 (90)
T ss_dssp CCSSTTCCCCHHHHTTCCTTTHHHHHHHTTCHHH
T ss_pred ccccccccccCccccccCHHHHHHHHHHcCCchH
Confidence 3566678999999999999999999999999663
No 60
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=28.47 E-value=45 Score=29.88 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHhHh
Q 016838 62 EELYNDLREFLSTVGLSES-HVPSMKELSAH 91 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~-~vps~~el~~h 91 (381)
+.++++|++-|..-.+++| .+||.+||++.
T Consensus 12 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~ 42 (236)
T 3edp_A 12 EVIASKIKDSINRDEYKTGMLMPNETALQEI 42 (236)
T ss_dssp HHHHHHHHHHHHTTSSCCCC--CCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHH
Confidence 5789999999999889887 68999999986
No 61
>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}
Probab=27.06 E-value=34 Score=30.42 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=33.2
Q ss_pred ceEEEEeee--CCCcccc--ccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCee
Q 016838 301 EIVEVAGSF--NGWHHRI--KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQW 359 (381)
Q Consensus 301 keVeVaGSF--NnW~~~I--pM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW 359 (381)
..|+|+|+- ++|.... +|... ...++.|.....|..|...++|-++.-|
T Consensus 117 ~~v~liG~at~~gW~~~~~~~~t~~----------~t~~g~~~~~~~l~~Ge~k~~~~~~~DW 169 (221)
T 4fch_A 117 AEVYLFGNTTGGSWAFNDEWKFTVP----------ATKDGNFVSPAMTASGEVRMCFKTDLDW 169 (221)
T ss_dssp CCEEEEBGGGTSBCSCBGGGBCBCC----------SSTTCCEECCCCCSCEECEEEECCSSCG
T ss_pred ceEEEEEeecCCCCCCCcccceeec----------cCCCceEEeEEEecCCcEEEEEcCCCCc
Confidence 469999984 6897543 44431 1367889888899999776665544333
No 62
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=26.73 E-value=52 Score=29.53 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHhcCCCCC-CCCChHHHhHhc
Q 016838 61 NEELYNDLREFLSTVGLSES-HVPSMKELSAHG 92 (381)
Q Consensus 61 ~~~l~~d~~ef~s~~~l~~~-~vps~~el~~hg 92 (381)
-..++++|++-|..-.+++| .+||.+||+++=
T Consensus 12 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~ 44 (243)
T 2wv0_A 12 YYQIMEQLKTQIKNGELQPDMPLPSEREYAEQF 44 (243)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHH
Confidence 35789999999999889887 589999999863
No 63
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=26.48 E-value=45 Score=29.78 Aligned_cols=31 Identities=13% Similarity=0.383 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHhHhc
Q 016838 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHG 92 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~-~vps~~el~~hg 92 (381)
..++++|++.|..-.+++| .+||.+||+++=
T Consensus 8 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~ 39 (239)
T 3bwg_A 8 QQIATEIETYIEEHQLQQGDKLPVLETLMAQF 39 (239)
T ss_dssp CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHH
Confidence 4789999999999899887 689999999864
No 64
>1igd_A Protein G; immunoglobulin binding protein; 1.10A {Streptococcus SP} SCOP: d.15.7.1 PDB: 1igc_A 2igd_A 2igh_A 1qkz_A 2igg_A 1uwx_A 3mp9_A
Probab=26.38 E-value=20 Score=27.54 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=10.7
Q ss_pred EcCeeecCCCCCee
Q 016838 355 VDGQWKVDPQRESV 368 (381)
Q Consensus 355 VDGeW~~DP~~PtV 368 (381)
|||+|.+||.-.+.
T Consensus 44 vdgew~yd~atktf 57 (61)
T 1igd_A 44 VDGVWTYDDATKTF 57 (61)
T ss_dssp CCCEEEEETTTTEE
T ss_pred CCceEeecCceeEE
Confidence 58999999876553
No 65
>3fil_A Immunoglobulin G-binding protein G; dimerization, beta sheet, alpha helix, improved hydrophobic packing of core residues, protein binding; HET: FME; 0.88A {Streptococcus SP} SCOP: d.15.7.1 PDB: 2qmt_A 2jsv_X 2ju6_X 2k0p_A 2kq4_X 2kwd_A 2lgi_A 2gi9_A 1gb1_A 1pga_A 1pgb_A 2gb1_A 3gb1_A 2klk_A 2rmm_A 2onq_A 2on8_A 2j52_A 2j53_A 3v3x_A* ...
Probab=25.24 E-value=15 Score=27.78 Aligned_cols=14 Identities=36% Similarity=0.857 Sum_probs=10.2
Q ss_pred EcCeeecCCCCCee
Q 016838 355 VDGQWKVDPQRESV 368 (381)
Q Consensus 355 VDGeW~~DP~~PtV 368 (381)
|||+|.+||.-.+.
T Consensus 39 vdgeW~YD~ATkTF 52 (56)
T 3fil_A 39 VDGEWTYDDATKTF 52 (56)
T ss_dssp CCCEEEEEGGGTEE
T ss_pred CccEEEecCceeEE
Confidence 58899998865543
No 66
>4fem_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: ACX; 2.50A {Bacteroides thetaiotaomicron}
Probab=25.00 E-value=45 Score=31.49 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=37.1
Q ss_pred CceEEEEeeeCCCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeec
Q 016838 300 GEIVEVAGSFNGWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKV 361 (381)
Q Consensus 300 AkeVeVaGSFNnW~~--~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~ 361 (381)
...++|+|++.+|.. ..+|.+.. ...|.|.....|+.| .+|||.-+..|-.
T Consensus 149 p~~lYlvG~~~~~~w~~~~~l~~~~----------~~~g~y~~~~yl~~~-~~fKf~~~~~~~~ 201 (358)
T 4fem_A 149 PKTMFIVGSMLDTDWKVWKPMAGVY----------GMDGQFYSMIYFDAN-SEFKFGTKENEYI 201 (358)
T ss_dssp CSCCEEEETTTCTTSCCEEECEECT----------TSTTEEEEEEEECTT-EEEEEESSTTCCB
T ss_pred cceEEEeccccCCCCcccceeeecc----------CCCceEEEEEEecCC-ceEEeccccCCcc
Confidence 578999999987643 34565431 357899999999766 6799988766543
No 67
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=24.94 E-value=43 Score=26.62 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=28.8
Q ss_pred CCCCCCCChHHHhHhchhhHHHHHHHhhHHHHHHH
Q 016838 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQL 111 (381)
Q Consensus 77 l~~~~vps~~el~~hgr~dlan~vrrrg~k~i~~l 111 (381)
+|--|++++.||+.--+.+|+.+++ ..-++.+.+
T Consensus 44 iPk~H~~~l~dL~~~e~~~l~~~~~-~~~~~~~~~ 77 (119)
T 4egu_A 44 VPKKHYDSLIDIPDKEMDIVSHIHV-VINKIAKEK 77 (119)
T ss_dssp EESSCCSSGGGSCGGGTHHHHHHHH-HHHHHHHHH
T ss_pred EechhhCCHhHCCHhHHHHHHHHHH-HHHHHHHHh
Confidence 5788999999999988999999997 577777765
No 68
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=24.70 E-value=56 Score=26.51 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=42.4
Q ss_pred cCcHHHHHHHHHHHHhcCCCCC-----CCCChHHHhHhchhhHHH------HHHHhhHHHHHHHHh
Q 016838 59 KSNEELYNDLREFLSTVGLSES-----HVPSMKELSAHGRDDLAN------IVRRRGYKFIRQLLK 113 (381)
Q Consensus 59 k~~~~l~~d~~ef~s~~~l~~~-----~vps~~el~~hgr~dlan------~vrrrg~k~i~~l~~ 113 (381)
-.|..+.+|+.+|+.+.+|..| .+ ++.+|..-.-+||-+ -.||+-.+-|.+|-.
T Consensus 12 ~~d~~~~~~V~~WL~sLrLhKY~~~F~~~-~~~~l~~LtdedL~~~GVta~GaRrKil~aI~~lr~ 76 (88)
T 2d3d_A 12 LTDPKLLKNIPMWLKSLRLHKYSDALSGT-PWIELIYLDDETLEKKGVLALGARRKLLKAFGIVID 76 (88)
T ss_dssp HTCHHHHTCHHHHHHHTTCGGGHHHHTTS-CHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccCccccccHHHHHHHcccchhHHHHhcC-CHHHHHHcCHHHHHHcCCccHhHHHHHHHHHHHHHH
Confidence 4688999999999999999876 22 777777777778754 468888888887653
No 69
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.12 E-value=53 Score=40.95 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=25.7
Q ss_pred hhhhhhhhhhhhccccccccccchH---HHHHHHhhcCCcEEEEEEee
Q 016838 253 ALSVLQTKAVTEINKAEKLISDKDE---ELIAAEESLSGLEVVEIQYS 297 (381)
Q Consensus 253 ~ls~lq~k~~~ei~~a~kLl~eKd~---~Ld~Ae~aLsgLk~VTF~W~ 297 (381)
.|+.||.+.+..+.+++.|-.+-+. +|++|++-+.||..=..+|.
T Consensus 2043 ~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2043 SIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 3334555555666666666554432 77777777666644444554
No 70
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Probab=21.58 E-value=1.4e+02 Score=24.86 Aligned_cols=57 Identities=19% Similarity=0.387 Sum_probs=37.9
Q ss_pred EEEEEEeecC---CceEEEEe-eeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEE-cCeeecC
Q 016838 290 EVVEIQYSGD---GEIVEVAG-SFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIV-DGQWKVD 362 (381)
Q Consensus 290 k~VTF~W~g~---AkeVeVaG-SFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL-~LpPG~YEYKFIV-DGeW~~D 362 (381)
..|.+.+.++ -..|+|.| +=.+| ++|.+ . ...|.+.- ....|-+.|++.. ||+|..-
T Consensus 28 l~VlV~nv~G~GdI~~V~Ik~~~~~~W---~~M~r------------n-Ga~W~~~s~~~L~GplSfRvtts~G~~~va 90 (108)
T 2jnz_A 28 LVLDIKYTRPGDSLAEVELRQHGSEEW---EPLTK------------K-GNVWEVKSSKPLVGPFNFRFMSKGGMRNVF 90 (108)
T ss_dssp EEEEEEEEBTTBCEEEEEEECTTCCCC---EECEE------------E-TTEEEEECSSCCCSSEEEEEEETTTEEEEE
T ss_pred EEEEEEEeCCCCCEEEEEEEeCCCCcE---eEccc------------c-CCEeEeCCCCCCCCCEEEEEEEcCCcEEEE
Confidence 3566666654 36789996 66788 57875 3 45888664 1345677888877 5777664
No 71
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=21.18 E-value=78 Score=27.75 Aligned_cols=30 Identities=30% Similarity=0.343 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHhHh
Q 016838 62 EELYNDLREFLSTVGLSES-HVPSMKELSAH 91 (381)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~-~vps~~el~~h 91 (381)
+.++..|++.|-.-.|+|| .+||.+||++.
T Consensus 7 ~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~ 37 (239)
T 2di3_A 7 ESVMDWVTEELRSGRLKIGDHLPSERALSET 37 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Confidence 5688999999999999999 68999999875
No 72
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A
Probab=20.98 E-value=49 Score=31.82 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=20.1
Q ss_pred CCeeEEEEEEEcCeee---cCCCCCeec
Q 016838 345 YPGTYEIKFIVDGQWK---VDPQRESVT 369 (381)
Q Consensus 345 pPG~YEYKFIVDGeW~---~DP~~PtVt 369 (381)
+.|.|.++|..+|+|+ +|+.-|+..
T Consensus 120 ~~G~y~vr~~~~G~W~~VvVDD~LP~~~ 147 (339)
T 2r9f_A 120 YAGIFHFQLWQFGEWVDVVVDDLLPTKD 147 (339)
T ss_dssp CCSEEEEEEEETTEEEEEEEESCEEEET
T ss_pred CCceEEEEEeeCCEEEEEEEcCCCcccC
Confidence 5689999999999997 477777654
No 73
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=20.92 E-value=81 Score=24.79 Aligned_cols=31 Identities=26% Similarity=0.220 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhcccccccc
Q 016838 242 RLKEQIEKEKLALSVLQTKAVTEINKAEKLI 272 (381)
Q Consensus 242 ~~k~q~~~~K~~ls~lq~k~~~ei~~a~kLl 272 (381)
+|+++++.-+-.-..|+.+++.++..|.+.+
T Consensus 10 ~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~ 40 (79)
T 4abm_A 10 RLRDTEEMLSKKQEFLEKKIEQELTAAKKHG 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544444444456666666666666666
No 74
>2rpv_A Immunoglobulin G-binding protein G; lanthanide binding peptide, LBT, paramagnetic effect, olivia, cell WALL, IGG-binding protein; NMR {Streptococcus SP}
Probab=20.35 E-value=31 Score=27.40 Aligned_cols=14 Identities=36% Similarity=0.857 Sum_probs=10.2
Q ss_pred EcCeeecCCCCCee
Q 016838 355 VDGQWKVDPQRESV 368 (381)
Q Consensus 355 VDGeW~~DP~~PtV 368 (381)
|||+|.+|+.-.+.
T Consensus 58 vdgeWsYD~ATkTF 71 (75)
T 2rpv_A 58 VDGEWTYDDATKTF 71 (75)
T ss_dssp CCSEEEEETTTTEE
T ss_pred CCceEeecCceeEE
Confidence 57888888876543
No 75
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=20.00 E-value=82 Score=28.88 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHHhcCCCCC-CCCChHHHhHhchhhHHHHHHHhhHHHHHHHHhCCC---CCCCCccccccc
Q 016838 61 NEELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSST---KPGFNGFVAEKS 128 (381)
Q Consensus 61 ~~~l~~d~~ef~s~~~l~~~-~vps~~el~~hgr~dlan~vrrrg~k~i~~l~~~~~---~~~~~~~~~~~~ 128 (381)
-..++++|++-|..-.+++| .+||.+||++.=. .....=|+ .|.+|...-- ..+.+-||+...
T Consensus 31 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~--vSr~tvr~---Al~~L~~~G~i~~~~g~G~~V~~~~ 97 (272)
T 3eet_A 31 YLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYG--VSDTVALE---ARKVLMAEGLVEGRSGSGTYVRERP 97 (272)
T ss_dssp HHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHT--CCHHHHHH---HHHHHHHTTSEEECCC--EEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHC--CCHHHHHH---HHHHHHHCCCEEEecCceEEEecCC
Confidence 46799999999999899887 6899999997632 22222222 3444444332 344455776644
Done!