Query 016839
Match_columns 381
No_of_seqs 126 out of 165
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05055 DUF677: Protein of un 100.0 3.8E-88 8.3E-93 663.4 34.0 331 44-375 1-336 (336)
2 PF05633 DUF793: Protein of un 100.0 3.9E-57 8.5E-62 447.1 26.6 318 39-375 34-389 (389)
3 PF03087 DUF241: Arabidopsis p 98.2 0.0014 3E-08 62.2 24.6 62 77-148 10-71 (231)
4 PF05055 DUF677: Protein of un 87.0 36 0.00079 34.2 21.8 18 195-212 147-164 (336)
5 TIGR02894 DNA_bind_RsfA transc 86.4 17 0.00036 32.8 11.9 42 332-373 116-157 (161)
6 PF04156 IncA: IncA protein; 81.6 40 0.00087 30.4 16.7 24 297-320 93-116 (191)
7 PRK00708 sec-independent trans 73.8 12 0.00026 35.1 7.0 49 227-283 1-49 (209)
8 PRK04654 sec-independent trans 71.3 21 0.00045 33.5 7.9 43 227-276 1-43 (214)
9 PF03511 Fanconi_A: Fanconi an 65.8 6.4 0.00014 29.7 2.7 34 108-141 14-52 (64)
10 KOG4191 Histone acetyltransfer 65.2 47 0.001 34.6 9.6 72 294-370 396-468 (516)
11 TIGR02132 phaR_Bmeg polyhydrox 64.1 1.2E+02 0.0026 27.9 11.1 83 276-365 51-138 (189)
12 PF09177 Syntaxin-6_N: Syntaxi 64.0 44 0.00096 27.0 7.7 28 332-359 37-64 (97)
13 PF15290 Syntaphilin: Golgi-lo 61.3 37 0.0008 33.2 7.6 35 332-366 119-156 (305)
14 PRK04098 sec-independent trans 61.1 20 0.00043 32.2 5.5 41 227-274 1-41 (158)
15 PF13887 MRF_C1: Myelin gene r 58.5 9.5 0.00021 25.6 2.2 22 334-355 14-35 (36)
16 PF05816 TelA: Toxic anion res 52.4 1.4E+02 0.003 29.8 10.5 56 269-325 86-142 (333)
17 TIGR01834 PHA_synth_III_E poly 51.6 59 0.0013 32.5 7.5 56 302-357 263-319 (320)
18 KOG4747 Two-component phosphor 51.6 1.8E+02 0.0038 26.0 11.2 83 89-179 27-109 (150)
19 COG1937 Uncharacterized protei 44.9 1.7E+02 0.0037 23.8 8.7 55 273-328 12-71 (89)
20 PF05461 ApoL: Apolipoprotein 43.3 3.5E+02 0.0076 27.0 17.3 33 185-217 63-95 (313)
21 COG4026 Uncharacterized protei 42.4 1.7E+02 0.0038 27.9 8.6 73 274-358 135-208 (290)
22 PF04568 IATP: Mitochondrial A 41.6 46 0.001 27.6 4.3 26 292-317 62-87 (100)
23 PF08580 KAR9: Yeast cortical 40.4 3.3E+02 0.007 30.3 11.8 29 294-322 52-80 (683)
24 PRK01919 tatB sec-independent 40.3 1.2E+02 0.0026 27.6 7.0 24 228-251 2-25 (169)
25 KOG0976 Rho/Rac1-interacting s 38.8 1.7E+02 0.0036 33.1 9.0 74 295-368 280-371 (1265)
26 COG4420 Predicted membrane pro 37.9 3.3E+02 0.0072 25.2 10.2 25 221-245 53-77 (191)
27 PRK01770 sec-independent trans 37.6 81 0.0018 28.7 5.6 42 227-275 1-42 (171)
28 PF10805 DUF2730: Protein of u 37.2 2.3E+02 0.0049 23.5 7.9 56 297-360 40-98 (106)
29 COG1579 Zn-ribbon protein, pos 37.1 3.3E+02 0.0072 26.1 9.9 40 332-371 43-82 (239)
30 PRK11637 AmiB activator; Provi 36.9 4.8E+02 0.01 26.7 16.5 16 361-376 161-176 (428)
31 PF00804 Syntaxin: Syntaxin; 35.9 2.1E+02 0.0045 22.3 8.0 78 299-376 14-96 (103)
32 PF09577 Spore_YpjB: Sporulati 35.1 2.7E+02 0.0058 26.6 8.9 91 270-365 93-191 (232)
33 PF07730 HisKA_3: Histidine ki 35.0 1.8E+02 0.0038 21.1 7.2 54 305-364 3-56 (68)
34 PF15188 CCDC-167: Coiled-coil 34.0 1.4E+02 0.0031 24.0 5.9 57 296-356 2-65 (85)
35 PF04012 PspA_IM30: PspA/IM30 32.8 4E+02 0.0086 24.5 12.8 75 290-364 42-121 (221)
36 PF02403 Seryl_tRNA_N: Seryl-t 31.8 2.1E+02 0.0045 23.3 6.8 30 332-361 72-101 (108)
37 PRK04778 septation ring format 31.2 6.9E+02 0.015 26.8 12.7 39 332-370 381-419 (569)
38 PHA01750 hypothetical protein 30.6 1.6E+02 0.0035 22.6 5.2 10 296-305 39-48 (75)
39 COG1459 PulF Type II secretory 30.6 2.9E+02 0.0063 28.5 9.0 23 162-184 91-113 (397)
40 PRK09546 zntB zinc transporter 30.4 5.3E+02 0.011 25.3 16.2 117 107-235 148-272 (324)
41 PF09340 NuA4: Histone acetylt 30.3 81 0.0017 25.0 3.9 26 335-360 3-28 (80)
42 KOG0217 Mismatch repair ATPase 30.1 4.8E+02 0.01 30.3 11.0 37 103-139 619-665 (1125)
43 PF09537 DUF2383: Domain of un 28.9 2.9E+02 0.0063 22.3 7.3 41 301-343 3-43 (111)
44 PHA02675 ORF104 fusion protein 28.9 2.3E+02 0.005 22.8 6.1 40 334-377 44-83 (90)
45 PHA02047 phage lambda Rz1-like 28.2 3.5E+02 0.0075 22.4 8.7 91 230-342 1-97 (101)
46 PLN02372 violaxanthin de-epoxi 27.7 5.1E+02 0.011 27.0 9.9 30 346-375 408-437 (455)
47 PF07889 DUF1664: Protein of u 27.4 4.1E+02 0.0088 23.0 9.3 10 299-308 50-59 (126)
48 cd07632 BAR_APPL2 The Bin/Amph 27.0 5.4E+02 0.012 24.3 10.3 41 109-149 2-42 (215)
49 PRK11352 regulator protein Frm 26.9 3.4E+02 0.0074 21.9 8.5 26 350-375 54-82 (91)
50 PRK10803 tol-pal system protei 26.4 5.9E+02 0.013 24.5 9.9 23 295-317 57-79 (263)
51 PF12777 MT: Microtubule-bindi 26.3 5E+02 0.011 25.9 9.7 35 336-370 251-285 (344)
52 PRK11091 aerobic respiration c 26.2 8.9E+02 0.019 26.5 15.3 21 336-356 133-153 (779)
53 PF14723 SSFA2_C: Sperm-specif 25.5 5.3E+02 0.011 23.6 9.1 62 299-364 105-175 (179)
54 PF12443 AKNA: AT-hook-contain 24.9 80 0.0017 26.5 3.1 35 336-370 47-81 (106)
55 TIGR02611 conserved hypothetic 24.7 2.4E+02 0.0052 24.3 5.9 50 225-276 25-74 (121)
56 PF09656 PGPGW: Putative trans 24.4 80 0.0017 23.1 2.6 43 230-274 6-48 (53)
57 PRK10698 phage shock protein P 24.4 5.9E+02 0.013 23.9 12.5 93 273-368 29-133 (222)
58 cd07601 BAR_APPL The Bin/Amphi 24.1 6.1E+02 0.013 23.9 9.2 23 334-356 30-52 (215)
59 PRK08541 flagellin; Validated 24.0 60 0.0013 30.6 2.4 21 228-248 6-26 (211)
60 smart00787 Spc7 Spc7 kinetocho 23.3 7.5E+02 0.016 24.6 13.4 99 266-367 135-244 (312)
61 PRK00404 tatB sec-independent 23.1 1.5E+02 0.0034 26.1 4.6 41 227-274 1-41 (141)
62 PF01917 Arch_flagellin: Archa 22.7 63 0.0014 29.2 2.3 20 229-248 4-23 (190)
63 PF04380 BMFP: Membrane fusoge 22.7 2.1E+02 0.0046 22.4 5.0 24 332-355 55-78 (79)
64 KOG0979 Structural maintenance 22.4 1.3E+03 0.028 27.0 12.8 73 302-374 279-351 (1072)
65 PF09006 Surfac_D-trimer: Lung 22.2 2.9E+02 0.0063 19.7 5.0 25 344-368 2-26 (46)
66 KOG3208 SNARE protein GS28 [In 21.7 7.1E+02 0.015 23.7 13.9 78 72-149 52-129 (231)
67 PF05597 Phasin: Poly(hydroxya 21.6 5.4E+02 0.012 22.3 7.8 23 332-354 107-129 (132)
68 PF05529 Bap31: B-cell recepto 21.6 5.6E+02 0.012 23.1 8.3 14 342-355 176-189 (192)
69 PRK11637 AmiB activator; Provi 21.6 8.8E+02 0.019 24.8 11.7 20 297-316 73-92 (428)
70 COG3883 Uncharacterized protei 21.3 5.3E+02 0.011 25.2 8.3 48 298-359 51-98 (265)
71 PLN02372 violaxanthin de-epoxi 20.7 6.6E+02 0.014 26.2 9.1 50 291-348 371-424 (455)
72 PF10337 DUF2422: Protein of u 20.7 7.2E+02 0.016 25.7 9.9 37 332-368 372-408 (459)
73 PF00957 Synaptobrevin: Synapt 20.4 4.2E+02 0.0092 20.6 8.3 55 303-357 4-61 (89)
74 PF14723 SSFA2_C: Sperm-specif 20.2 3.1E+02 0.0066 25.1 6.0 24 336-359 107-130 (179)
75 PF04508 Pox_A_type_inc: Viral 20.1 1.5E+02 0.0032 18.1 2.7 20 343-362 3-22 (23)
76 cd07645 I-BAR_IMD_BAIAP2L1 Inv 20.1 7.6E+02 0.017 23.5 9.1 28 187-214 115-142 (226)
77 KOG0980 Actin-binding protein 20.0 7.6E+02 0.016 28.3 10.0 61 295-355 455-515 (980)
No 1
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=100.00 E-value=3.8e-88 Score=663.37 Aligned_cols=331 Identities=57% Similarity=0.879 Sum_probs=318.2
Q ss_pred hhhhhHHHHHHHHhhhhhccCCcccCCCChhhHHHHHHhhhcCCHHHHHHHHhhcccccccchhhhhHHHHHHhhHHHHH
Q 016839 44 LQSFDATIQERTSRVIHKLSAGVEVHSLSFDSLKEVTGSLLEMNQEVVKVILECKKDIWNNQDLFGLVEDYFETSIKTLD 123 (381)
Q Consensus 44 l~sFd~~l~~r~~~~i~~l~~~~~~~~lSl~~~~~~~~~lLe~~qe~~~~il~~~~~~w~~~~l~~Lv~~YFd~S~kald 123 (381)
|++||++|++||+++|++|+.|++++++|+++|++++++||||+||++++||++++|+|++|+|++||++|||+|.+|||
T Consensus 1 l~~fd~~l~~~t~~~i~sl~~~~~~~s~s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~ 80 (336)
T PF05055_consen 1 LQSFDSSLQERTNRVISSLATGVETRSLSFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASD 80 (336)
T ss_pred CCCccHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhccchhhhhh-hccHHHHHHHHHHHHhhHhcCCCCCHH-HhhHHHHHHHhHHHHHH
Q 016839 124 FCTVLENCLKRARNSQLIIQLAVKQFDEEVELQE-VVDEKRYVRTLDELKKFKDAGDPFTEE-FFVLFQSVYKQQVLMLE 201 (381)
Q Consensus 124 iC~aL~~~I~~~R~~~~~i~~al~~l~~~~~~~~-~~~~~~~~ra~~~L~~f~~~~npf~~~-~~~~f~~~~~~~~~ll~ 201 (381)
||++|++||+|+|.+|++|+.+|+.|+.++.++| |.++++|.+|+++|++|+.++|||+++ ++++|+.||++|++|++
T Consensus 81 ~C~~L~k~I~~aR~~~~~I~~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~Ll~ 160 (336)
T PF05055_consen 81 FCEALLKCIHRARDNYLPIRRALKQFEKESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSLLE 160 (336)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988764333 346899999999999999999999999 88999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhcChhHHHhhhcccccccccccchhhHHHHHHHHHh
Q 016839 202 RLQKRKRKLDKKLKSMKTWRMVSNVLFVSTFVAVLIFSVVAAAIAAPPLVTALAGALAVPIGSVGKWCNSLWNSYEKALK 281 (381)
Q Consensus 202 ~l~s~~~kl~~kL~~~r~~~~~s~~~~~~~~~~v~V~~vv~aai~~~~~~~ala~~~~~p~~~~~~W~~~~~~~~e~al~ 281 (381)
+|+++++|+++|+++.|+|+++++++|++++++|+|++||+|||++|+++ |+|+++++|++++++|++++|++|+++++
T Consensus 161 kL~~~k~Kl~kklk~~r~~~kvs~v~fvaa~~aV~i~svv~aa~a~~~vv-~~aa~~a~P~~~~gkw~~~~~~k~~~al~ 239 (336)
T PF05055_consen 161 KLDSRKKKLRKKLKLVRTWRKVSNVCFVAAFVAVAIASVVAAAHAVPAVV-ALAAALAAPIGSVGKWCGSLWKKYEEALK 239 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHccchHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887765 57788899999999999999999999999
Q ss_pred hhHHhhhhhhcchhHHHhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhhH---HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 016839 282 GQKELMSTMQIGAYVKIMDMDHIRVLVNKLEIQIEALLNNADFALREEDV---VKLAIEEIRKRLEVFMETIEVLCDHAD 358 (381)
Q Consensus 282 ~q~e~~~~~~kGt~illkdldti~~lV~rL~~~ie~~~~~v~f~l~~~~~---v~~~v~eL~k~~~~~~~~Ld~Lee~V~ 358 (381)
+|.+.+++|+|||||+++|||||++||+||+++|||++++|+||++++++ ++++|+||+|+++.|+++|||||||||
T Consensus 240 ~~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~ 319 (336)
T PF05055_consen 240 KQKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVY 319 (336)
T ss_pred HHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999874 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016839 359 KCSRDIRRARTVILQKI 375 (381)
Q Consensus 359 ~cf~~I~raR~~vL~~I 375 (381)
+||++|||||++||++|
T Consensus 320 lC~~tInrAR~lVlq~I 336 (336)
T PF05055_consen 320 LCFKTINRARTLVLQEI 336 (336)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999997
No 2
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=100.00 E-value=3.9e-57 Score=447.14 Aligned_cols=318 Identities=21% Similarity=0.269 Sum_probs=263.7
Q ss_pred hhCCchhhhhHHHHHHHHhhhhhccCCc-ccCCCChhhHHHHHHhhhcCCHHHHHHHHhhcccccccchhhhhHHHHHHh
Q 016839 39 RLDPDLQSFDATIQERTSRVIHKLSAGV-EVHSLSFDSLKEVTGSLLEMNQEVVKVILECKKDIWNNQDLFGLVEDYFET 117 (381)
Q Consensus 39 ~~~~~l~sFd~~l~~r~~~~i~~l~~~~-~~~~lSl~~~~~~~~~lLe~~qe~~~~il~~~~~~w~~~~l~~Lv~~YFd~ 117 (381)
+..++|++||+++.+|++.+.. ++. ..+.||++|++++++.||++|.|+..+|++.....-.+|+++++|++|||+
T Consensus 34 ~~~~~L~~Fq~~va~rl~~L~~---~~~~~~~~LSL~W~~~~ld~~l~~~~efr~li~~~~~~~~s~~~~dk~v~eylD~ 110 (389)
T PF05633_consen 34 SLEAELEAFQRHVAERLSDLSP---SSKDSDDFLSLSWMRKALDSFLCCHEEFRALITNLRDLPLSKPPDDKWVDEYLDR 110 (389)
T ss_pred cchhhHHHHHHHHHHHHHHhcc---CcCcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccCCchHHHHHHHHHHH
Confidence 4567899999999999999754 222 247899999999999999977777777777754244568899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchhhhhhhccHHHHHHHHHHHHhhHhcCC-CCCHH---HhhHHHHHH
Q 016839 118 SIKTLDFCTVLENCLKRARNSQLIIQLAVKQFDEEVELQEVVDEKRYVRTLDELKKFKDAGD-PFTEE---FFVLFQSVY 193 (381)
Q Consensus 118 S~kaldiC~aL~~~I~~~R~~~~~i~~al~~l~~~~~~~~~~~~~~~~ra~~~L~~f~~~~n-pf~~~---~~~~f~~~~ 193 (381)
|+|+|||||+++++|+++|+||+++++|+++|+... +++++|++||+++|.++..++. ..+.. ..++.+++.
T Consensus 111 sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~~----~~~~~~~rRAr~aL~dl~~~~~~~~~~~~~~~~~rnrs~~ 186 (389)
T PF05633_consen 111 SVKLLDVCNAIRDGISQLRQWQLLLQIALHALDSSR----PLGEGQLRRARKALSDLKIAMLDDKDSGSSGGSHRNRSFG 186 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCcHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc
Confidence 999999999999999999999999999999998863 3899999999999999996442 11111 112222211
Q ss_pred H---------------------hHHHHHHHHHH---HHHHHhhhhhhhhhh-----hhHhhHHHHHHHHHHHHHHHHHHH
Q 016839 194 K---------------------QQVLMLERLQK---RKRKLDKKLKSMKTW-----RMVSNVLFVSTFVAVLIFSVVAAA 244 (381)
Q Consensus 194 ~---------------------~~~~ll~~l~s---~~~kl~~kL~~~r~~-----~~~s~~~~~~~~~~v~V~~vv~aa 244 (381)
+ ..+--+.+.|| +++.|+.+|..||+. +++++++|+|++++|||||++|||
T Consensus 187 r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m~~nL~~Pk~~esak~~gL~~A~Y~m~~vtvFV~~vlVAA 266 (389)
T PF05633_consen 187 RSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAMGENLVLPKGKESAKGRGLLRAMYGMKSVTVFVCWVLVAA 266 (389)
T ss_pred cccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHHHHhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHe
Confidence 1 11123566776 666688999999988 469999999999999999999999
Q ss_pred hhcChhHHHhhhccc-ccccccccchhhHHHHHHHHHhhhHHhhhh-hhcchhHHHhhhhhHHHHHHHHHHHHHhHhhhh
Q 016839 245 IAAPPLVTALAGALA-VPIGSVGKWCNSLWNSYEKALKGQKELMST-MQIGAYVKIMDMDHIRVLVNKLEIQIEALLNNA 322 (381)
Q Consensus 245 i~~~~~~~ala~~~~-~p~~~~~~W~~~~~~~~e~al~~q~e~~~~-~~kGt~illkdldti~~lV~rL~~~ie~~~~~v 322 (381)
+||+++ ++..++. +| ..+.|++++..+|++ |+++ +++ ..||++++++||+.|+++|++|++.|+ .+
T Consensus 267 ~pc~~r--gL~~~l~~vP--~~~~WA~s~~~LQ~r-I~eE---ikkk~~kgs~gLLkEl~~ve~~vr~L~el~d----~~ 334 (389)
T PF05633_consen 267 FPCQDR--GLQVHLSAVP--RQFSWAPSFISLQER-INEE---IKKKERKGSCGLLKELQQVEASVRELHELID----SF 334 (389)
T ss_pred eecCCc--cccCCCCCCc--cccccchHHHHHHHH-HHHH---HhhccccCcchHHHHHHHHHHHHHHHHHHHH----hc
Confidence 999998 4545555 45 589999999999999 8853 555 558899999999999999999999998 47
Q ss_pred hhhhhhhhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016839 323 DFALREEDV--VKLAIEEIRKRLEVFMETIEVLCDHADKCSRDIRRARTVILQKI 375 (381)
Q Consensus 323 ~f~l~~~~~--v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~raR~~vL~~I 375 (381)
+|++++++. +++.|+||.+.++.|++||||||+||+++||+|+++|+++|+.|
T Consensus 335 ~~p~~~e~~~ev~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~l 389 (389)
T PF05633_consen 335 QFPLEEEKEEEVREAVEELARVCEALSQGLDPLERQVREVFHRIVRSRTELLDSL 389 (389)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence 999988765 99999999999999999999999999999999999999999864
No 3
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=98.18 E-value=0.0014 Score=62.23 Aligned_cols=62 Identities=21% Similarity=0.408 Sum_probs=47.0
Q ss_pred HHHHHhhhcCCHHHHHHHHhhcccccccchhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 016839 77 KEVTGSLLEMNQEVVKVILECKKDIWNNQDLFGLVEDYFETSIKTLDFCTVLENCLKRARNSQLIIQLAVKQ 148 (381)
Q Consensus 77 ~~~~~~lLe~~qe~~~~il~~~~~~w~~~~l~~Lv~~YFd~S~kaldiC~aL~~~I~~~R~~~~~i~~al~~ 148 (381)
-..++-||. .+.+-..+.... .+| |++.+|.|+..+|+|++.++.+-+.+....=+|.+|..
T Consensus 10 y~~~~ell~-lp~tq~al~~~~-~k~--------ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRR 71 (231)
T PF03087_consen 10 YECLEELLQ-LPSTQQALSHHQ-EKW--------VEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRR 71 (231)
T ss_pred HHHHHHHHc-CCHHHHHHHHHH-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444554 233333444444 566 99999999999999999999999999999999999874
No 4
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=86.98 E-value=36 Score=34.25 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 016839 195 QQVLMLERLQKRKRKLDK 212 (381)
Q Consensus 195 ~~~~ll~~l~s~~~kl~~ 212 (381)
++..+-++..+.+++++.
T Consensus 147 ~F~~i~~~~~~Ll~kL~~ 164 (336)
T PF05055_consen 147 QFQSIHDQQSSLLEKLDS 164 (336)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555553
No 5
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=86.42 E-value=17 Score=32.76 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCDHADKCSRDIRRARTVILQ 373 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~raR~~vL~ 373 (381)
++.-+++|.+..+.+.+.+..+++.-...+..++|+|.+++.
T Consensus 116 l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~~ 157 (161)
T TIGR02894 116 LQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAVV 157 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666777777777788888888899999999999999998763
No 6
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.58 E-value=40 Score=30.40 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=14.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHhh
Q 016839 297 KIMDMDHIRVLVNKLEIQIEALLN 320 (381)
Q Consensus 297 llkdldti~~lV~rL~~~ie~~~~ 320 (381)
+-+++++++..+..+...++....
T Consensus 93 l~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 93 LQEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666654433
No 7
>PRK00708 sec-independent translocase; Provisional
Probab=73.85 E-value=12 Score=35.07 Aligned_cols=49 Identities=14% Similarity=0.334 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhHHHhhhcccccccccccchhhHHHHHHHHHhhh
Q 016839 227 LFVSTFVAVLIFSVVAAAIAAPPLVTALAGALAVPIGSVGKWCNSLWNSYEKALKGQ 283 (381)
Q Consensus 227 ~~~~~~~~v~V~~vv~aai~~~~~~~ala~~~~~p~~~~~~W~~~~~~~~e~al~~q 283 (381)
||++++.=++|+.||+..+.+|..+ + .+ ....|+|+..+.+.-.. +..|
T Consensus 1 MFdIG~~ELlvI~vVaLvV~GPkrL---P---~~-~R~lGk~v~k~R~~a~e-~r~~ 49 (209)
T PRK00708 1 MFDIGWSELLVIAIVLIVVVGPKDL---P---PM-LRAFGKMTARMRKMAGE-FRRQ 49 (209)
T ss_pred CCCccHHHHHHHHHHHHhhcCchHH---H---HH-HHHHHHHHHHHHHHHHH-HHHH
Confidence 4667777777887888888888874 1 11 22467777766553333 4443
No 8
>PRK04654 sec-independent translocase; Provisional
Probab=71.33 E-value=21 Score=33.51 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhHHHhhhcccccccccccchhhHHHHH
Q 016839 227 LFVSTFVAVLIFSVVAAAIAAPPLVTALAGALAVPIGSVGKWCNSLWNSY 276 (381)
Q Consensus 227 ~~~~~~~~v~V~~vv~aai~~~~~~~ala~~~~~p~~~~~~W~~~~~~~~ 276 (381)
||++++.=++|..|++..+.||.+.=.+ ....|+|+..+.+..
T Consensus 1 MFgIG~~ELLlI~VVALlV~GPerLPe~-------aRtlGk~irk~R~~~ 43 (214)
T PRK04654 1 MFDIGVGELTLIAVVALVVLGPERLPKA-------ARFAGLWVRRARMQW 43 (214)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHH-------HHHHHHHHHHHHHHH
Confidence 4677777778887888888888874111 124567776665533
No 9
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=65.82 E-value=6.4 Score=29.73 Aligned_cols=34 Identities=35% Similarity=0.773 Sum_probs=25.2
Q ss_pred hhhHHHHHH-----hhHHHHHHHHHHHHHHHHHHhhhHH
Q 016839 108 FGLVEDYFE-----TSIKTLDFCTVLENCLKRARNSQLI 141 (381)
Q Consensus 108 ~~Lv~~YFd-----~S~kaldiC~aL~~~I~~~R~~~~~ 141 (381)
-.|++.|+. .+.||+|+|..+..|+++-+...+.
T Consensus 14 M~LlSs~l~p~~~~d~~kaldiCaeIL~cLE~R~isWl~ 52 (64)
T PF03511_consen 14 MGLLSSYLAPKEGADSLKALDICAEILGCLEKRKISWLV 52 (64)
T ss_pred HHHHHHhcCcccccccHHHHHHHHHHHHHHHhCCCcHHH
Confidence 345555552 5789999999999999998765443
No 10
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=65.18 E-value=47 Score=34.59 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=49.4
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhhH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 016839 294 AYVKIMDMDHIRVLVNKLEIQIEALLNNADFALREEDV-VKLAIEEIRKRLEVFMETIEVLCDHADKCSRDIRRARTV 370 (381)
Q Consensus 294 t~illkdldti~~lV~rL~~~ie~~~~~v~f~l~~~~~-v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~raR~~ 370 (381)
-+-.-+|-|.|..-.++|..++.-.. ++--++..+ ++.+=+|+.. ..|.+-||+|.+||..||..++|+|..
T Consensus 396 d~pasdddDEvlaeLR~lqaeLk~vS---~~N~k~k~~Ll~la~eE~a~--qe~~q~lddlDkqI~qaYvKr~r~~kk 468 (516)
T KOG4191|consen 396 DRPASDDDDEVLAELRKLQAELKAVS---AHNRKKKHDLLRLAPEEMAR--QEFQQVLDDLDKQIEQAYVKRNRSRKK 468 (516)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455778899999999999886321 222112222 4444444443 358999999999999999999999853
No 11
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=64.12 E-value=1.2e+02 Score=27.87 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=50.6
Q ss_pred HHHHHhhhHHhhhh-hhcchhHHHhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhhH-H---HHHHHHHHHHHHHHHhhH
Q 016839 276 YEKALKGQKELMST-MQIGAYVKIMDMDHIRVLVNKLEIQIEALLNNADFALREEDV-V---KLAIEEIRKRLEVFMETI 350 (381)
Q Consensus 276 ~e~al~~q~e~~~~-~~kGt~illkdldti~~lV~rL~~~ie~~~~~v~f~l~~~~~-v---~~~v~eL~k~~~~~~~~L 350 (381)
|.++++++ ++. -++..+--=.|+.++..+|-.|+..||.+ +..++..=+ + .+.-..+++..-.+.+-|
T Consensus 51 yQKafnE~---MekYLe~lNlPSr~DiarvA~lvinlE~kvD~l----ee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~ 123 (189)
T TIGR02132 51 YQKALNDT---TGNYLEQVNVPTKEDIANVASLVINLEEKVDLI----EEFFDDKFDELEAQQEQAPALKKDVTKLKQDI 123 (189)
T ss_pred HHHHHHHH---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhCchHHhHHHHHHHHH
Confidence 45555543 333 33454556689999999999999999864 333333111 2 234445666666666667
Q ss_pred HHHHHHHHHHHHHHH
Q 016839 351 EVLCDHADKCSRDIR 365 (381)
Q Consensus 351 d~Lee~V~~cf~~I~ 365 (381)
.-|++.|+.....|.
T Consensus 124 ~~l~~K~D~~L~llE 138 (189)
T TIGR02132 124 KSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777766666555
No 12
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=63.97 E-value=44 Score=27.03 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCDHADK 359 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee~V~~ 359 (381)
+...-+||...+..+..+|++|++-|.-
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888888888888877765
No 13
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=61.27 E-value=37 Score=33.24 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=31.1
Q ss_pred HHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 016839 332 VKLA---IEEIRKRLEVFMETIEVLCDHADKCSRDIRR 366 (381)
Q Consensus 332 v~~~---v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~r 366 (381)
+||+ +++|+...+.++..|-+=.+.|-.+|..||-
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINi 156 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINI 156 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhh
Confidence 5554 8889999999999999999999999999984
No 14
>PRK04098 sec-independent translocase; Provisional
Probab=61.11 E-value=20 Score=32.19 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhHHHhhhcccccccccccchhhHHH
Q 016839 227 LFVSTFVAVLIFSVVAAAIAAPPLVTALAGALAVPIGSVGKWCNSLWN 274 (381)
Q Consensus 227 ~~~~~~~~v~V~~vv~aai~~~~~~~ala~~~~~p~~~~~~W~~~~~~ 274 (381)
||++++.=++|..|+|..+.||.+.-.+ +...++|...+.+
T Consensus 1 MfgiG~~EllvI~vVaLlvfGP~KLP~~-------~r~lGk~ir~~K~ 41 (158)
T PRK04098 1 MFGMGFFEILVILVVAIIFLGPDKLPQA-------MVDIAKFFKAVKK 41 (158)
T ss_pred CCCCcHHHHHHHHHHHHhhcCchHHHHH-------HHHHHHHHHHHHH
Confidence 3566777777777777777788874221 1235666666554
No 15
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=58.52 E-value=9.5 Score=25.63 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q 016839 334 LAIEEIRKRLEVFMETIEVLCD 355 (381)
Q Consensus 334 ~~v~eL~k~~~~~~~~Ld~Lee 355 (381)
-+++||+|....|...+++||+
T Consensus 14 ~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 14 GAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHHhccHHHHHHHHhh
Confidence 4699999999999999999985
No 16
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=52.45 E-value=1.4e+02 Score=29.81 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHhhhHHhhhh-hhcchhHHHhhhhhHHHHHHHHHHHHHhHhhhhhhh
Q 016839 269 CNSLWNSYEKALKGQKELMST-MQIGAYVKIMDMDHIRVLVNKLEIQIEALLNNADFA 325 (381)
Q Consensus 269 ~~~~~~~~e~al~~q~e~~~~-~~kGt~illkdldti~~lV~rL~~~ie~~~~~v~f~ 325 (381)
...++.+|+. +++|+|.+-. -.+|.-.+.+|...++.+-..+.+.+......+.++
T Consensus 86 ~~~~~~ky~s-v~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag 142 (333)
T PF05816_consen 86 LERYFAKYQS-VQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAG 142 (333)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999 9999888766 668889999999999999999999998877776655
No 17
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=51.64 E-value=59 Score=32.53 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHhHhhhhhhhhhhhhH-HHHHHHHHHHHHHHHHhhHHHHHHHH
Q 016839 302 DHIRVLVNKLEIQIEALLNNADFALREEDV-VKLAIEEIRKRLEVFMETIEVLCDHA 357 (381)
Q Consensus 302 dti~~lV~rL~~~ie~~~~~v~f~l~~~~~-v~~~v~eL~k~~~~~~~~Ld~Lee~V 357 (381)
+..=.+=..+.+.+|..+....+|-+.+=+ +.+.+.||++....++++|.+|+..+
T Consensus 263 na~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~~ 319 (320)
T TIGR01834 263 NALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEANP 319 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 334444557888899888888888766444 89999999999999999999998753
No 18
>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]
Probab=51.64 E-value=1.8e+02 Score=25.96 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=56.0
Q ss_pred HHHHHHHhhcccccccchhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchhhhhhhccHHHHHHHH
Q 016839 89 EVVKVILECKKDIWNNQDLFGLVEDYFETSIKTLDFCTVLENCLKRARNSQLIIQLAVKQFDEEVELQEVVDEKRYVRTL 168 (381)
Q Consensus 89 e~~~~il~~~~~~w~~~~l~~Lv~~YFd~S~kaldiC~aL~~~I~~~R~~~~~i~~al~~l~~~~~~~~~~~~~~~~ra~ 168 (381)
+.+..+.+..++- ++--....+.-||+.|.+|+ +.++..++.-| -+..+.--.|.|...++ .+|-.+.+...
T Consensus 27 ~qF~qlq~lqD~~-~p~fv~ev~~~fF~~s~~~i---~~~r~ald~~~-d~k~~~~~~hqlkgsss---sIGa~kvk~~c 98 (150)
T KOG4747|consen 27 SQFLQLQELQDDS-SPDFVEEVVGLFFEDSERLI---NNLRLALDCER-DFKKLGSHVHQLKGSSS---SIGALKVKKVC 98 (150)
T ss_pred HHHHHHHHHhccc-CccHHHHHHHHHHHHHHHHH---HHHHHHHhhHh-HHHHHHHHHHHccCchh---hhhHHHHHHHH
Confidence 5555555554331 22245777999999999997 34555556555 77778888898876542 36777777777
Q ss_pred HHHHhhHhcCC
Q 016839 169 DELKKFKDAGD 179 (381)
Q Consensus 169 ~~L~~f~~~~n 179 (381)
..++.|-.++|
T Consensus 99 ~~~~~~~~~~n 109 (150)
T KOG4747|consen 99 VGFNEFCEAGN 109 (150)
T ss_pred HHHHHHHhhcc
Confidence 77777776665
No 19
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.91 E-value=1.7e+02 Score=23.78 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhHHhhhh-hhcchh--HHHhhhhhHHHHHHHHHHHH--HhHhhhhhhhhhh
Q 016839 273 WNSYEKALKGQKELMST-MQIGAY--VKIMDMDHIRVLVNKLEIQI--EALLNNADFALRE 328 (381)
Q Consensus 273 ~~~~e~al~~q~e~~~~-~~kGt~--illkdldti~~lV~rL~~~i--e~~~~~v~f~l~~ 328 (381)
.++..+ +.+|.+.+.+ ..-|.| -++.-+-.|+..++++...| +|+...+.-+.++
T Consensus 12 ~~RlrR-i~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~vl~~hl~~cv~~a~~~ 71 (89)
T COG1937 12 LNRLRR-IEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMREVLEEHLKECVKRAVED 71 (89)
T ss_pred HHHHHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444 7777777766 335665 25666777777777766655 4444444444443
No 20
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=43.25 E-value=3.5e+02 Score=26.96 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=16.1
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHhhhhhhh
Q 016839 185 FFVLFQSVYKQQVLMLERLQKRKRKLDKKLKSM 217 (381)
Q Consensus 185 ~~~~f~~~~~~~~~ll~~l~s~~~kl~~kL~~~ 217 (381)
|...|-.........+++|....+++++--+.-
T Consensus 63 FL~~Fp~~k~~Le~~I~kL~~lAd~idk~Hk~~ 95 (313)
T PF05461_consen 63 FLKEFPQLKEELEEHIRKLRALADEIDKVHKDC 95 (313)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455554444445555555555554443333
No 21
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=42.41 E-value=1.7e+02 Score=27.88 Aligned_cols=73 Identities=12% Similarity=0.207 Sum_probs=47.9
Q ss_pred HHHHHHHhhhHHhhhhhhcchhHHHhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhhH-HHHHHHHHHHHHHHHHhhHHH
Q 016839 274 NSYEKALKGQKELMSTMQIGAYVKIMDMDHIRVLVNKLEIQIEALLNNADFALREEDV-VKLAIEEIRKRLEVFMETIEV 352 (381)
Q Consensus 274 ~~~e~al~~q~e~~~~~~kGt~illkdldti~~lV~rL~~~ie~~~~~v~f~l~~~~~-v~~~v~eL~k~~~~~~~~Ld~ 352 (381)
..|+. +++.++. ..+-.--|+++++....-+..+.+.++.. +.+.. +.+..+-+-.....+++.+++
T Consensus 135 e~~ee-~kekl~E---~~~EkeeL~~eleele~e~ee~~erlk~l--------e~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 135 EDYEE-LKEKLEE---LQKEKEELLKELEELEAEYEEVQERLKRL--------EVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 45555 6655555 55555668899999988888888888742 22333 556666666666677777777
Q ss_pred HHHHHH
Q 016839 353 LCDHAD 358 (381)
Q Consensus 353 Lee~V~ 358 (381)
|+..|.
T Consensus 203 Le~~~E 208 (290)
T COG4026 203 LEPGVE 208 (290)
T ss_pred hccccc
Confidence 776643
No 22
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=41.55 E-value=46 Score=27.60 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.3
Q ss_pred cchhHHHhhhhhHHHHHHHHHHHHHh
Q 016839 292 IGAYVKIMDMDHIRVLVNKLEIQIEA 317 (381)
Q Consensus 292 kGt~illkdldti~~lV~rL~~~ie~ 317 (381)
-.-|+--+|-+.+..|=..|..++++
T Consensus 62 E~~Y~r~~EkEqL~~Lk~kl~~e~~~ 87 (100)
T PF04568_consen 62 EEQYFRKKEKEQLKKLKEKLKEEIEH 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34488888888888877777777764
No 23
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=40.41 E-value=3.3e+02 Score=30.26 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=23.7
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHhhhh
Q 016839 294 AYVKIMDMDHIRVLVNKLEIQIEALLNNA 322 (381)
Q Consensus 294 t~illkdldti~~lV~rL~~~ie~~~~~v 322 (381)
-|+|.++|+.|+..+.+|.+.||....++
T Consensus 52 l~~L~~~l~~ID~ai~~~l~lIe~~v~~i 80 (683)
T PF08580_consen 52 LYGLREGLEEIDSAISRFLDLIEVYVSAI 80 (683)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence 36778999999999999999999864333
No 24
>PRK01919 tatB sec-independent translocase; Provisional
Probab=40.30 E-value=1.2e+02 Score=27.55 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhH
Q 016839 228 FVSTFVAVLIFSVVAAAIAAPPLV 251 (381)
Q Consensus 228 ~~~~~~~v~V~~vv~aai~~~~~~ 251 (381)
|.+++.=++|..||+..+.+|...
T Consensus 2 FdIG~~ElliI~VVALiV~GPekL 25 (169)
T PRK01919 2 IDLGLSKLALIGVVALVVIGPERL 25 (169)
T ss_pred CCCcHHHHHHHHHHHHheeCchHh
Confidence 455666667777777777788874
No 25
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=38.77 E-value=1.7e+02 Score=33.05 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=56.2
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHhHhhhhhhhhhh-----------------hhH-HHHHHHHHHHHHHHHHhhHHHHHHH
Q 016839 295 YVKIMDMDHIRVLVNKLEIQIEALLNNADFALRE-----------------EDV-VKLAIEEIRKRLEVFMETIEVLCDH 356 (381)
Q Consensus 295 ~illkdldti~~lV~rL~~~ie~~~~~v~f~l~~-----------------~~~-v~~~v~eL~k~~~~~~~~Ld~Lee~ 356 (381)
-+|.+|+-.-+-+|+-+..+++..+.+.--+..+ ++. ++..+.|-+.+.+.|.+.+.+||++
T Consensus 280 s~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKk 359 (1265)
T KOG0976|consen 280 SVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKK 359 (1265)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 4577888888888888888888777655433332 112 7778889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 016839 357 ADKCSRDIRRAR 368 (381)
Q Consensus 357 V~~cf~~I~raR 368 (381)
=+...+.+.+-+
T Consensus 360 rd~al~dvr~i~ 371 (1265)
T KOG0976|consen 360 RDMALMDVRSIQ 371 (1265)
T ss_pred HHHHHHhHHHHH
Confidence 888887776544
No 26
>COG4420 Predicted membrane protein [Function unknown]
Probab=37.94 E-value=3.3e+02 Score=25.21 Aligned_cols=25 Identities=24% Similarity=0.386 Sum_probs=20.5
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHh
Q 016839 221 RMVSNVLFVSTFVAVLIFSVVAAAI 245 (381)
Q Consensus 221 ~~~s~~~~~~~~~~v~V~~vv~aai 245 (381)
+-+++.-|+.+++++++.|+++=..
T Consensus 53 ~f~Gsw~fil~~~~~ll~Wi~lNl~ 77 (191)
T COG4420 53 RFGGSWAFILTFTLLLLLWIVLNLF 77 (191)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHh
Confidence 4578889999999999999985443
No 27
>PRK01770 sec-independent translocase; Provisional
Probab=37.59 E-value=81 Score=28.73 Aligned_cols=42 Identities=19% Similarity=0.427 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhHHHhhhcccccccccccchhhHHHH
Q 016839 227 LFVSTFVAVLIFSVVAAAIAAPPLVTALAGALAVPIGSVGKWCNSLWNS 275 (381)
Q Consensus 227 ~~~~~~~~v~V~~vv~aai~~~~~~~ala~~~~~p~~~~~~W~~~~~~~ 275 (381)
||++++.=++|..||+..+.||.+.=. -+...+.|...+.+.
T Consensus 1 MF~IG~~ELllI~vVaLlV~GPerLP~-------~~r~lg~~i~~~R~~ 42 (171)
T PRK01770 1 MFDIGFSELLLVFVIGLVVLGPQRLPV-------AVKTVAGWIRALRSL 42 (171)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHH-------HHHHHHHHHHHHHHH
Confidence 466777777777788788888887411 123467777776553
No 28
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.23 E-value=2.3e+02 Score=23.45 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=38.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhhH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 016839 297 KIMDMDHIRVLVNKLEIQIEALLNNADFALREEDV---VKLAIEEIRKRLEVFMETIEVLCDHADKC 360 (381)
Q Consensus 297 llkdldti~~lV~rL~~~ie~~~~~v~f~l~~~~~---v~~~v~eL~k~~~~~~~~Ld~Lee~V~~c 360 (381)
+-.+++..++=+..++..++|+ | ..++ ++..+.+++.....+..+|++++.++++.
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~L------P--t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHL------P--TRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC------C--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3355566677777777777754 2 2222 77778888888888888888888777664
No 29
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.08 E-value=3.3e+02 Score=26.12 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCDHADKCSRDIRRARTVI 371 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~raR~~v 371 (381)
....+.++....+.|..+.-.++.+++..-..+.++|..+
T Consensus 43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 43 LNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666666666666666666666554
No 30
>PRK11637 AmiB activator; Provisional
Probab=36.85 E-value=4.8e+02 Score=26.74 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 016839 361 SRDIRRARTVILQKII 376 (381)
Q Consensus 361 f~~I~raR~~vL~~I~ 376 (381)
+..|+.+|..+++.+.
T Consensus 161 l~~i~~~d~~~l~~l~ 176 (428)
T PRK11637 161 FGYLNQARQETIAELK 176 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 31
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=35.88 E-value=2.1e+02 Score=22.27 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=44.9
Q ss_pred hhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 016839 299 MDMDHIRVLVNKLEIQIEALLNNADFALREEDVVKLAIEEIRKRLEVFMETIEVLCDHAD-----KCSRDIRRARTVILQ 373 (381)
Q Consensus 299 kdldti~~lV~rL~~~ie~~~~~v~f~l~~~~~v~~~v~eL~k~~~~~~~~Ld~Lee~V~-----~cf~~I~raR~~vL~ 373 (381)
.+|+.|+..|.+|...-...+.....--+..+.+...+.++.+........|+.|+..+. .+.....|.|.-.+.
T Consensus 14 ~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~nq~~ 93 (103)
T PF00804_consen 14 EDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRKNQVQ 93 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHH
Confidence 455666666666655555444333200011222777788888888888888888888753 455556666665555
Q ss_pred HHh
Q 016839 374 KII 376 (381)
Q Consensus 374 ~I~ 376 (381)
.+.
T Consensus 94 ~L~ 96 (103)
T PF00804_consen 94 ALS 96 (103)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 32
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=35.09 E-value=2.7e+02 Score=26.62 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHhhhHHhhhhhh-cc-hhHHHhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhhHHHHH---HHHHHH---
Q 016839 270 NSLWNSYEKALKGQKELMSTMQ-IG-AYVKIMDMDHIRVLVNKLEIQIEALLNNADFALREEDVVKLA---IEEIRK--- 341 (381)
Q Consensus 270 ~~~~~~~e~al~~q~e~~~~~~-kG-t~illkdldti~~lV~rL~~~ie~~~~~v~f~l~~~~~v~~~---v~eL~k--- 341 (381)
.|+|.-|++.+.+....++.+. +| .-..-..++..-.....+++.+ .|+.+-+.-..|..- +++++-
T Consensus 93 qPLW~~~e~~i~~~~~~mk~a~~~~~~~~f~~~~n~f~~~y~~I~Psl-----~I~~~~~~v~~v~s~i~yl~~~~~~~~ 167 (232)
T PF09577_consen 93 QPLWLQYEKPIMEDFQRMKQAAQKGDKEAFRASLNEFLSHYELIRPSL-----TIDRPPEQVQRVDSHISYLERLRFQQL 167 (232)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchh-----hccCCHHHHHHHHHHHHHHHHhhhccc
Confidence 4566777777887777766633 33 3344455555555555444444 233332221112222 233221
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Q 016839 342 RLEVFMETIEVLCDHADKCSRDIR 365 (381)
Q Consensus 342 ~~~~~~~~Ld~Lee~V~~cf~~I~ 365 (381)
......+.|+.||..+...|...-
T Consensus 168 ~~~~~~~~l~~le~~l~~lF~~~k 191 (232)
T PF09577_consen 168 DQKEVQEALEQLEEDLQKLFDGVK 191 (232)
T ss_pred ChHHHHHHHHHHHHHHHHHhCccc
Confidence 345567789999999988887643
No 33
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=34.99 E-value=1.8e+02 Score=21.13 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 016839 305 RVLVNKLEIQIEALLNNADFALREEDVVKLAIEEIRKRLEVFMETIEVLCDHADKCSRDI 364 (381)
Q Consensus 305 ~~lV~rL~~~ie~~~~~v~f~l~~~~~v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I 364 (381)
.++.+.|||.+-+.+..+.+-++. ....+.+..+...+.|+.+.+.+..+...+
T Consensus 3 ~rIAreLHD~v~q~L~~i~~~l~~------~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 56 (68)
T PF07730_consen 3 RRIARELHDGVGQSLTAIKMQLEA------LRRRLADDPEEAREELEEIRELLREALQEL 56 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHTTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH------HHhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999998887776555432 111222233345555555555555544433
No 34
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=34.03 E-value=1.4e+02 Score=23.98 Aligned_cols=57 Identities=14% Similarity=0.282 Sum_probs=36.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhh-------HHHHHHHHHHHHHHHHHhhHHHHHHH
Q 016839 296 VKIMDMDHIRVLVNKLEIQIEALLNNADFALREED-------VVKLAIEEIRKRLEVFMETIEVLCDH 356 (381)
Q Consensus 296 illkdldti~~lV~rL~~~ie~~~~~v~f~l~~~~-------~v~~~v~eL~k~~~~~~~~Ld~Lee~ 356 (381)
.+-+++|.++.-+......+| .|++-+...+ .+..-+.+|++..+...++|.-|-.|
T Consensus 2 ~V~~eId~lEekl~~cr~~le----~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLE----AVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHH----HHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 355788888888888887777 4555555422 25555666666666666666666554
No 35
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=32.75 E-value=4e+02 Score=24.53 Aligned_cols=75 Identities=11% Similarity=0.148 Sum_probs=37.0
Q ss_pred hhcchhHHHhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhhH--HHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 016839 290 MQIGAYVKIMDMDHIRVLVNKLEIQIEALLNNADFALREEDV--VKLA---IEEIRKRLEVFMETIEVLCDHADKCSRDI 364 (381)
Q Consensus 290 ~~kGt~illkdldti~~lV~rL~~~ie~~~~~v~f~l~~~~~--v~~~---v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I 364 (381)
+.++...+.-.-..+.+-+..+...++.+-.-+..|+..+++ -+++ ..++....+.+.++++.++.++...-..|
T Consensus 42 a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l 121 (221)
T PF04012_consen 42 ARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQL 121 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544455555555566666666666666666677776544 2222 23333333444444444444444433333
No 36
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.78 E-value=2.1e+02 Score=23.26 Aligned_cols=30 Identities=13% Similarity=0.327 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCDHADKCS 361 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf 361 (381)
+..-+++|++....+..+++++++.++...
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777777777766543
No 37
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.20 E-value=6.9e+02 Score=26.83 Aligned_cols=39 Identities=28% Similarity=0.287 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCDHADKCSRDIRRARTV 370 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~raR~~ 370 (381)
++...+++.+..+.+.+..+++.+.+..+-.....+|.-
T Consensus 381 l~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~k 419 (569)
T PRK04778 381 LQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREK 419 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666677777777777777766666666654
No 38
>PHA01750 hypothetical protein
Probab=30.61 E-value=1.6e+02 Score=22.63 Aligned_cols=10 Identities=10% Similarity=0.471 Sum_probs=5.8
Q ss_pred HHHhhhhhHH
Q 016839 296 VKIMDMDHIR 305 (381)
Q Consensus 296 illkdldti~ 305 (381)
|+.+|||+..
T Consensus 39 IV~~ELdNL~ 48 (75)
T PHA01750 39 IVNSELDNLK 48 (75)
T ss_pred HHHHHHHHHH
Confidence 5566666553
No 39
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.60 E-value=2.9e+02 Score=28.45 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhHhcCCCCCHH
Q 016839 162 KRYVRTLDELKKFKDAGDPFTEE 184 (381)
Q Consensus 162 ~~~~ra~~~L~~f~~~~npf~~~ 184 (381)
.+.+..+.++..-...++||++.
T Consensus 91 ~~~~~~l~~i~~~l~~G~sls~a 113 (397)
T COG1459 91 PKLKQVLTSILEELESGKSLSEA 113 (397)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHH
Confidence 44555666666555667777654
No 40
>PRK09546 zntB zinc transporter; Reviewed
Probab=30.39 E-value=5.3e+02 Score=25.26 Aligned_cols=117 Identities=13% Similarity=0.098 Sum_probs=55.1
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHH----HhhhHHHHHHHhhccchhhhhhhccHHHHHHHHHHHHhhHhcCCC-C
Q 016839 107 LFGLVEDYFETSIKTLDFCTVLENCLKRA----RNSQLIIQLAVKQFDEEVELQEVVDEKRYVRTLDELKKFKDAGDP-F 181 (381)
Q Consensus 107 l~~Lv~~YFd~S~kaldiC~aL~~~I~~~----R~~~~~i~~al~~l~~~~~~~~~~~~~~~~ra~~~L~~f~~~~np-f 181 (381)
++.+++.||+.-.+.-+-...+.+.|-+- +..=..++.-+-.|.. .+..-++.+..+....+| +
T Consensus 148 ld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr-----------~l~p~~~~l~~L~~~~~~~~ 216 (324)
T PRK09546 148 CDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRR-----------YMAPQRDVFARLASERLPWM 216 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcCCccc
Confidence 56667788888777777777776666321 0000111111111110 000112223333333333 3
Q ss_pred CHHHhhHHHHHHHhHHHHHHHHHHHHHH---HhhhhhhhhhhhhHhhHHHHHHHHHH
Q 016839 182 TEEFFVLFQSVYKQQVLMLERLQKRKRK---LDKKLKSMKTWRMVSNVLFVSTFVAV 235 (381)
Q Consensus 182 ~~~~~~~f~~~~~~~~~ll~~l~s~~~k---l~~kL~~~r~~~~~s~~~~~~~~~~v 235 (381)
+.+....|++++++....++.+.+.+.. +....... .....-..+++++++++
T Consensus 217 ~~~~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~-~s~~~N~~m~~Ltilt~ 272 (324)
T PRK09546 217 SDDDRRRMQDIADRLGRGLDDLDACIARTAVLADEIASV-MAEAMNRRTYTMSLMAM 272 (324)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4444567888888777666666654442 21111111 11224556666666654
No 41
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=30.35 E-value=81 Score=24.95 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 016839 335 AIEEIRKRLEVFMETIEVLCDHADKC 360 (381)
Q Consensus 335 ~v~eL~k~~~~~~~~Ld~Lee~V~~c 360 (381)
-++++-++-..+.+.|..||++||..
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~ 28 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDK 28 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788899999999999874
No 42
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=30.10 E-value=4.8e+02 Score=30.33 Aligned_cols=37 Identities=19% Similarity=0.066 Sum_probs=26.4
Q ss_pred ccchhhhhHHHHHHhhHH----------HHHHHHHHHHHHHHHHhhh
Q 016839 103 NNQDLFGLVEDYFETSIK----------TLDFCTVLENCLKRARNSQ 139 (381)
Q Consensus 103 ~~~~l~~Lv~~YFd~S~k----------aldiC~aL~~~I~~~R~~~ 139 (381)
+-|+|+||+.-|++.+.+ +|+.|..+.+-++..+.-.
T Consensus 619 klPDlERlL~Rih~~~~~~~k~i~~f~rvLegfk~~~~~~~~~~~v~ 665 (1125)
T KOG0217|consen 619 KLPDLERLLVRIHNGGEKNKKKIADFIRVLEGFKEINKLLGSLINVL 665 (1125)
T ss_pred hCCcHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 449999999999998877 5666666555555555444
No 43
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=28.95 E-value=2.9e+02 Score=22.34 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 016839 301 MDHIRVLVNKLEIQIEALLNNADFALREEDVVKLAIEEIRKRL 343 (381)
Q Consensus 301 ldti~~lV~rL~~~ie~~~~~v~f~l~~~~~v~~~v~eL~k~~ 343 (381)
++++..|++.++|.++....+++-+=+ ..++....++....
T Consensus 3 i~~Ln~Ll~~~~d~~~~Y~~a~~~~~~--~~lk~~f~~~~~~~ 43 (111)
T PF09537_consen 3 IEALNDLLKGLHDGIEGYEKAAEKAED--PELKSLFQEFAQER 43 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--S--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHH
Confidence 567778889999999987777765521 22555555554444
No 44
>PHA02675 ORF104 fusion protein; Provisional
Probab=28.92 E-value=2.3e+02 Score=22.81 Aligned_cols=40 Identities=18% Similarity=0.078 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016839 334 LAIEEIRKRLEVFMETIEVLCDHADKCSRDIRRARTVILQKIIK 377 (381)
Q Consensus 334 ~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~raR~~vL~~I~~ 377 (381)
..-+.+-++|....+.|+-||.|+.- |.++=..+-++|.-
T Consensus 44 k~~~~i~~cC~~~~~~L~RLE~H~ET----LRk~Ml~L~KKIDV 83 (90)
T PHA02675 44 DSYKTITDCCRETGARLDRLERHLET----LREALLKLNTKIDV 83 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcce
Confidence 44566778888889999999999864 44444444455543
No 45
>PHA02047 phage lambda Rz1-like protein
Probab=28.19 E-value=3.5e+02 Score=22.42 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcChhHHHhhhcccccccccccchhhHHHHHHHHHhhhHHhhhhhhcchhHHHhhhhhHHHHHH
Q 016839 230 STFVAVLIFSVVAAAIAAPPLVTALAGALAVPIGSVGKWCNSLWNSYEKALKGQKELMSTMQIGAYVKIMDMDHIRVLVN 309 (381)
Q Consensus 230 ~~~~~v~V~~vv~aai~~~~~~~ala~~~~~p~~~~~~W~~~~~~~~e~al~~q~e~~~~~~kGt~illkdldti~~lV~ 309 (381)
|--+.|.+.-+|++|..+.-..+. .++|+...-+.-++ +..|+|. +..-+.++-+-|.
T Consensus 1 mr~t~~~~~~~v~~~~g~~y~~~~-----------~~r~~g~~h~~a~~-la~qLE~----------a~~r~~~~Q~~V~ 58 (101)
T PHA02047 1 MRRTIVAILVLVVVALGASYGFVQ-----------SYRALGIAHEEAKR-QTARLEA----------LEVRYATLQRHVQ 58 (101)
T ss_pred CchhHHHHHHHHHHHhhhhHHHHH-----------HHHHHHHHHHHHHH-HHHHHHH----------HHHHHHHHHHHHH
Q ss_pred HHHHHHHhHhhhhhhhhhhhhH------HHHHHHHHHHH
Q 016839 310 KLEIQIEALLNNADFALREEDV------VKLAIEEIRKR 342 (381)
Q Consensus 310 rL~~~ie~~~~~v~f~l~~~~~------v~~~v~eL~k~ 342 (381)
.|+..-+.-.+-++-+++..++ =--|+++|+|.
T Consensus 59 ~l~~kae~~t~Ei~~aL~~n~~WaD~PVPpaV~~~Lck~ 97 (101)
T PHA02047 59 AVEARTNTQRQEVDRALDQNRPWADRPVPPAVVDSLCKR 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCChHHHHHHHHH
No 46
>PLN02372 violaxanthin de-epoxidase
Probab=27.75 E-value=5.1e+02 Score=27.01 Aligned_cols=30 Identities=13% Similarity=0.349 Sum_probs=17.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016839 346 FMETIEVLCDHADKCSRDIRRARTVILQKI 375 (381)
Q Consensus 346 ~~~~Ld~Lee~V~~cf~~I~raR~~vL~~I 375 (381)
|.+|+.+|++..-.+++...+--..+|+++
T Consensus 408 ~~~~~~~l~~~~~~f~~~lskee~~~l~~~ 437 (455)
T PLN02372 408 LEEGLKELEQDEENFLKELSKEEKELLEKL 437 (455)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 556666666666666665555555555554
No 47
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.41 E-value=4.1e+02 Score=22.97 Aligned_cols=10 Identities=0% Similarity=0.232 Sum_probs=3.8
Q ss_pred hhhhhHHHHH
Q 016839 299 MDMDHIRVLV 308 (381)
Q Consensus 299 kdldti~~lV 308 (381)
+-|++++..+
T Consensus 50 kql~~vs~~l 59 (126)
T PF07889_consen 50 KQLEQVSESL 59 (126)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 48
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=27.02 E-value=5.4e+02 Score=24.31 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=34.5
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q 016839 109 GLVEDYFETSIKTLDFCTVLENCLKRARNSQLIIQLAVKQF 149 (381)
Q Consensus 109 ~Lv~~YFd~S~kaldiC~aL~~~I~~~R~~~~~i~~al~~l 149 (381)
.|+..|=+++....|.||.|+++..|+=..|--+-.|-+.+
T Consensus 2 ~l~~v~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~ 42 (215)
T cd07632 2 SLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQL 42 (215)
T ss_pred cHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 57899999999999999999999999987777666665544
No 49
>PRK11352 regulator protein FrmR; Provisional
Probab=26.86 E-value=3.4e+02 Score=21.93 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 016839 350 IEVLCDHADKCSRDIRR---ARTVILQKI 375 (381)
Q Consensus 350 Ld~Lee~V~~cf~~I~r---aR~~vL~~I 375 (381)
..-|+.|+..|+..-.. -|...++++
T Consensus 54 ~~ile~hl~~cv~~~~~~~~~~~~~i~el 82 (91)
T PRK11352 54 AEVLESHIRETFDRNDCYSREVSQSVDDT 82 (91)
T ss_pred HHHHHHHHHHHHhhhccCccchHHHHHHH
Confidence 34466777777666531 144445444
No 50
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.38 E-value=5.9e+02 Score=24.48 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=17.4
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHh
Q 016839 295 YVKIMDMDHIRVLVNKLEIQIEA 317 (381)
Q Consensus 295 ~illkdldti~~lV~rL~~~ie~ 317 (381)
.=+.+.|+.+..=|.+|...||.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~ 79 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQE 79 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 44677888888888888888874
No 51
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=26.26 E-value=5e+02 Score=25.89 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 016839 336 IEEIRKRLEVFMETIEVLCDHADKCSRDIRRARTV 370 (381)
Q Consensus 336 v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~raR~~ 370 (381)
+.+|.+..+.-......|+..+..|=.++.||..+
T Consensus 251 l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~L 285 (344)
T PF12777_consen 251 LAALQKEYEEAQKEKQELEEEIEETERKLERAEKL 285 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 33444444444445555555566665566555543
No 52
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=26.25 E-value=8.9e+02 Score=26.53 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 016839 336 IEEIRKRLEVFMETIEVLCDH 356 (381)
Q Consensus 336 v~eL~k~~~~~~~~Ld~Lee~ 356 (381)
.++|.+......+....|+++
T Consensus 133 ~~~L~~~i~~r~~~~~~l~~~ 153 (779)
T PRK11091 133 FEQLKNEIKEREETQIELEQQ 153 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444433333333444433
No 53
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=25.51 E-value=5.3e+02 Score=23.63 Aligned_cols=62 Identities=10% Similarity=0.155 Sum_probs=37.2
Q ss_pred hhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhhH---------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 016839 299 MDMDHIRVLVNKLEIQIEALLNNADFALREEDV---------VKLAIEEIRKRLEVFMETIEVLCDHADKCSRDI 364 (381)
Q Consensus 299 kdldti~~lV~rL~~~ie~~~~~v~f~l~~~~~---------v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I 364 (381)
.||+++.+..+.....++. ++..+.+... =++-+++|..--+.++++|.|||-|...=-+.|
T Consensus 105 ~Elq~mr~~ln~FR~qm~d----lE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~DRl~~l 175 (179)
T PF14723_consen 105 QELQQMRRSLNSFREQMMD----LELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLEDRLLQL 175 (179)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667776666555544442 1222222211 455577777777888999999998887644433
No 54
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=24.92 E-value=80 Score=26.50 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 016839 336 IEEIRKRLEVFMETIEVLCDHADKCSRDIRRARTV 370 (381)
Q Consensus 336 v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~raR~~ 370 (381)
.+|++..+-.+++++|+|-.||.++.+.|...+.-
T Consensus 47 ~~ege~~~qkL~eqteeLK~kvqe~sk~i~~~~~~ 81 (106)
T PF12443_consen 47 IREGEQMIQKLGEQTEELKDKVQEFSKRIEQDSPD 81 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCcc
Confidence 56666777777889999999999988888765543
No 55
>TIGR02611 conserved hypothetical protein TIGR02611. Members of this family are Actinobacterial putative proteins of about 150 amino acids in length with three apparent transmembrane helix and an unusual motif with consensus sequence PGPGW.
Probab=24.71 E-value=2.4e+02 Score=24.28 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcChhHHHhhhcccccccccccchhhHHHHH
Q 016839 225 NVLFVSTFVAVLIFSVVAAAIAAPPLVTALAGALAVPIGSVGKWCNSLWNSY 276 (381)
Q Consensus 225 ~~~~~~~~~~v~V~~vv~aai~~~~~~~ala~~~~~p~~~~~~W~~~~~~~~ 276 (381)
++...+....+++++++....|+|.-.+=+.++.-+ +..+.|+..+.+--
T Consensus 25 ri~v~v~G~~~~~~Gi~ml~lPGpG~l~i~iGl~iL--atEf~WA~r~L~~~ 74 (121)
T TIGR02611 25 RPLVLVVGWVVLIVGIITIPLPGPGWLTIFIGLAIL--SLEFVWAQRLLRWG 74 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH--HHhhHHHHHHHHHH
Confidence 344444445555666666777888855333333222 24688998876533
No 56
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=24.42 E-value=80 Score=23.15 Aligned_cols=43 Identities=12% Similarity=0.263 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhhcChhHHHhhhcccccccccccchhhHHH
Q 016839 230 STFVAVLIFSVVAAAIAAPPLVTALAGALAVPIGSVGKWCNSLWN 274 (381)
Q Consensus 230 ~~~~~v~V~~vv~aai~~~~~~~ala~~~~~p~~~~~~W~~~~~~ 274 (381)
+.-.++++++++..-.|+|...+-+.++.- .+..+.|+..+..
T Consensus 6 v~G~~lv~~Gii~~~lPGpG~l~i~~GL~i--La~ef~wArr~l~ 48 (53)
T PF09656_consen 6 VLGWVLVVAGIIMLPLPGPGLLVIFLGLAI--LATEFPWARRLLR 48 (53)
T ss_pred hHHHHHHHHHHHhhcCCCCcHHHHHHHHHH--HHHhhHHHHHHHH
Confidence 334455556666667777765433333322 2245778877654
No 57
>PRK10698 phage shock protein PspA; Provisional
Probab=24.39 E-value=5.9e+02 Score=23.85 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhHHhhhhhhcchhHHHhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhhH------------HHHHHHHHH
Q 016839 273 WNSYEKALKGQKELMSTMQIGAYVKIMDMDHIRVLVNKLEIQIEALLNNADFALREEDV------------VKLAIEEIR 340 (381)
Q Consensus 273 ~~~~e~al~~q~e~~~~~~kGt~illkdldti~~lV~rL~~~ie~~~~~v~f~l~~~~~------------v~~~v~eL~ 340 (381)
++.+.+.+.+++.. ..++.--++-+=..+.+-+..+...++.+-.-+..|+..+++ ..+.+.+|.
T Consensus 29 l~q~i~em~~~l~~---~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~ 105 (222)
T PRK10698 29 VRLMIQEMEDTLVE---VRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLE 105 (222)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445544444 333333344444555566666666666666666666665443 334456666
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 016839 341 KRLEVFMETIEVLCDHADKCSRDIRRAR 368 (381)
Q Consensus 341 k~~~~~~~~Ld~Lee~V~~cf~~I~raR 368 (381)
...+....+++.|..++...=..|..+|
T Consensus 106 ~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 106 HEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666555544
No 58
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.07 E-value=6.1e+02 Score=23.87 Aligned_cols=23 Identities=9% Similarity=0.107 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 016839 334 LAIEEIRKRLEVFMETIEVLCDH 356 (381)
Q Consensus 334 ~~v~eL~k~~~~~~~~Ld~Lee~ 356 (381)
.+.+++......|..+|.+++.|
T Consensus 30 ~a~~~~~~A~~~F~~~L~ef~~~ 52 (215)
T cd07601 30 DAQNELKSATQALSKKLGEYEKQ 52 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444433
No 59
>PRK08541 flagellin; Validated
Probab=23.99 E-value=60 Score=30.57 Aligned_cols=21 Identities=33% Similarity=0.267 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 016839 228 FVSTFVAVLIFSVVAAAIAAP 248 (381)
Q Consensus 228 ~~~~~~~v~V~~vv~aai~~~ 248 (381)
-|.....|||+-|+|||+++.
T Consensus 6 ~GIGTLIVFIAmVLVAAVAA~ 26 (211)
T PRK08541 6 VGIGTLIVFIAMVLVAAVAAA 26 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999663
No 60
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.28 E-value=7.5e+02 Score=24.60 Aligned_cols=99 Identities=13% Similarity=0.214 Sum_probs=46.8
Q ss_pred ccchhhHHHHHHHHHhhhHHhhhhhhcchhHHHhhhhhHHHHHHHHHHHHHhHhhhhh---hh---hhh---hhH--HHH
Q 016839 266 GKWCNSLWNSYEKALKGQKELMSTMQIGAYVKIMDMDHIRVLVNKLEIQIEALLNNAD---FA---LRE---EDV--VKL 334 (381)
Q Consensus 266 ~~W~~~~~~~~e~al~~q~e~~~~~~kGt~illkdldti~~lV~rL~~~ie~~~~~v~---f~---l~~---~~~--v~~ 334 (381)
|-|--.+.......+.+..+. +...--.|.++++.++.++..|.+.-+....-++ -. ++. ++- +++
T Consensus 135 YeWR~kllegLk~~L~~~~~~---l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~ 211 (312)
T smart00787 135 YEWRMKLLEGLKEGLDENLEG---LKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKE 211 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHH
Confidence 556555444333335544444 4444445667777776666555544333322111 11 111 010 555
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 016839 335 AIEEIRKRLEVFMETIEVLCDHADKCSRDIRRA 367 (381)
Q Consensus 335 ~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~ra 367 (381)
.+.+.....+.+...++++++++...-..|...
T Consensus 212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~ 244 (312)
T smart00787 212 KLKKLLQEIMIKVKKLEELEEELQELESKIEDL 244 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555554444433
No 61
>PRK00404 tatB sec-independent translocase; Provisional
Probab=23.13 E-value=1.5e+02 Score=26.09 Aligned_cols=41 Identities=22% Similarity=0.435 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhHHHhhhcccccccccccchhhHHH
Q 016839 227 LFVSTFVAVLIFSVVAAAIAAPPLVTALAGALAVPIGSVGKWCNSLWN 274 (381)
Q Consensus 227 ~~~~~~~~v~V~~vv~aai~~~~~~~ala~~~~~p~~~~~~W~~~~~~ 274 (381)
||++++.=++|..||+..+.++.+.=.+ ....|+|...+.+
T Consensus 1 MF~IG~~ELlvI~VVaLlV~GPkkLP~l-------aR~lG~~i~~~rr 41 (141)
T PRK00404 1 MFGISFSELLLVGLVALLVLGPERLPGA-------ARTAGLWIGRLKR 41 (141)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHH-------HHHHHHHHHHHHH
Confidence 3566666677777777778888874221 1245777766654
No 62
>PF01917 Arch_flagellin: Archaebacterial flagellin; InterPro: IPR002774 Archaeal motility occurs by the rotation of flagella that are different to bacterial flagella, but show similarity to bacterial type IV pili. These similarities include the multiflagellin nature of the flagellar filament, N-terminal sequence similarities, as well as the presence of homologous proteins in the two systems [, ]. Also unlike bacterial flagellins but similar to type IV pilins, archaeal flagellins are initially synthesised with a short leader peptide that is cleaved by a membrane-located peptidase [, ]. The enzyme responsible for the removal of the this leader peptide is FlaK [].; GO: 0005198 structural molecule activity, 0006928 cellular component movement
Probab=22.74 E-value=63 Score=29.24 Aligned_cols=20 Identities=35% Similarity=0.195 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 016839 229 VSTFVAVLIFSVVAAAIAAP 248 (381)
Q Consensus 229 ~~~~~~v~V~~vv~aai~~~ 248 (381)
+...+.|||+.|+|||+++.
T Consensus 4 gi~t~IvfIA~VlVAAv~a~ 23 (190)
T PF01917_consen 4 GIGTAIVFIAFVLVAAVAAG 23 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 46778899999998888663
No 63
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=22.67 E-value=2.1e+02 Score=22.37 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCD 355 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee 355 (381)
.+.++...+.+.+.+...|..||.
T Consensus 55 q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 55 QKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778888888888888888888885
No 64
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=22.42 E-value=1.3e+03 Score=27.00 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016839 302 DHIRVLVNKLEIQIEALLNNADFALREEDVVKLAIEEIRKRLEVFMETIEVLCDHADKCSRDIRRARTVILQK 374 (381)
Q Consensus 302 dti~~lV~rL~~~ie~~~~~v~f~l~~~~~v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~raR~~vL~~ 374 (381)
.+++..+..+...+..+.....-+..+-..+.+..+++.+..+....+++.|-.....--.+|.++|..+++.
T Consensus 279 eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~ 351 (1072)
T KOG0979|consen 279 EELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDA 351 (1072)
T ss_pred hhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554433333222222225666788888889999999999999999999999999988875
No 65
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=22.24 E-value=2.9e+02 Score=19.70 Aligned_cols=25 Identities=8% Similarity=0.228 Sum_probs=16.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Q 016839 344 EVFMETIEVLCDHADKCSRDIRRAR 368 (381)
Q Consensus 344 ~~~~~~Ld~Lee~V~~cf~~I~raR 368 (381)
..+++|++.|+.||.-.=...-+-+
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888876544444443
No 66
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.72 E-value=7.1e+02 Score=23.75 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=42.7
Q ss_pred ChhhHHHHHHhhhcCCHHHHHHHHhhcccccccchhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q 016839 72 SFDSLKEVTGSLLEMNQEVVKVILECKKDIWNNQDLFGLVEDYFETSIKTLDFCTVLENCLKRARNSQLIIQLAVKQF 149 (381)
Q Consensus 72 Sl~~~~~~~~~lLe~~qe~~~~il~~~~~~w~~~~l~~Lv~~YFd~S~kaldiC~aL~~~I~~~R~~~~~i~~al~~l 149 (381)
++.++-.=.+.||+--+++...+-+|+-..-.++.+..=+---+|.=-.--.-.+-+++.|++.|..-.++..+-...
T Consensus 52 s~ks~~~eie~LLeql~~vndsm~~~~~s~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~ 129 (231)
T KOG3208|consen 52 SFKSLENEIEGLLEQLQDVNDSMNDCASSPANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADI 129 (231)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456666777888887777777776653111111222222222222222222334555666888888877777777654
No 67
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=21.64 E-value=5.4e+02 Score=22.34 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLC 354 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Le 354 (381)
.+.-|++|....+.|...|+.|.
T Consensus 107 s~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 107 SRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556555555555555554
No 68
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.62 E-value=5.6e+02 Score=23.10 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=6.5
Q ss_pred HHHHHHhhHHHHHH
Q 016839 342 RLEVFMETIEVLCD 355 (381)
Q Consensus 342 ~~~~~~~~Ld~Lee 355 (381)
..+.+++|.+.|++
T Consensus 176 ~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 176 EIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHh
Confidence 33444455554444
No 69
>PRK11637 AmiB activator; Provisional
Probab=21.59 E-value=8.8e+02 Score=24.81 Aligned_cols=20 Identities=0% Similarity=0.119 Sum_probs=8.4
Q ss_pred HHhhhhhHHHHHHHHHHHHH
Q 016839 297 KIMDMDHIRVLVNKLEIQIE 316 (381)
Q Consensus 297 llkdldti~~lV~rL~~~ie 316 (381)
+.++++.+..-+..+...|+
T Consensus 73 ~~~~l~~l~~qi~~~~~~i~ 92 (428)
T PRK11637 73 LLAQLKKQEEAISQASRKLR 92 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 70
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.28 E-value=5.3e+02 Score=25.19 Aligned_cols=48 Identities=8% Similarity=0.266 Sum_probs=31.2
Q ss_pred HhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 016839 298 IMDMDHIRVLVNKLEIQIEALLNNADFALREEDVVKLAIEEIRKRLEVFMETIEVLCDHADK 359 (381)
Q Consensus 298 lkdldti~~lV~rL~~~ie~~~~~v~f~l~~~~~v~~~v~eL~k~~~~~~~~Ld~Lee~V~~ 359 (381)
-+|++.+..-|..+...++. .+.-+.++......|...+++|++.|..
T Consensus 51 q~ei~~L~~qi~~~~~k~~~--------------~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDE--------------LQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666655542 5555667777777777777777777654
No 71
>PLN02372 violaxanthin de-epoxidase
Probab=20.73 E-value=6.6e+02 Score=26.24 Aligned_cols=50 Identities=18% Similarity=0.318 Sum_probs=23.1
Q ss_pred hcchhHHHhh----hhhHHHHHHHHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 016839 291 QIGAYVKIMD----MDHIRVLVNKLEIQIEALLNNADFALREEDVVKLAIEEIRKRLEVFME 348 (381)
Q Consensus 291 ~kGt~illkd----ldti~~lV~rL~~~ie~~~~~v~f~l~~~~~v~~~v~eL~k~~~~~~~ 348 (381)
..|--.++|| -.+|+.-|+++...++...... .+.+-+++|++..++|..
T Consensus 371 e~~e~~i~~e~~~~~~e~~~~v~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~f~~ 424 (455)
T PLN02372 371 EEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRV--------ALEEGLKELEQDEENFLK 424 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHh
Confidence 3455566677 3333333444444444333221 134445555555555544
No 72
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=20.66 E-value=7.2e+02 Score=25.75 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCDHADKCSRDIRRAR 368 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~raR 368 (381)
..++++.|.+....+.+..++-=+|+..|++.+|+-|
T Consensus 372 ~~~~~~~L~~~~~~l~~a~~~~L~~~~~~l~~~n~~r 408 (459)
T PF10337_consen 372 LDEIMERLHEPFSDLLEACDEGLEHAIEWLELVNRFR 408 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 6777889999999999999999999999999999888
No 73
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=20.35 E-value=4.2e+02 Score=20.64 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHhHhhhhhhhhhhhhH---HHHHHHHHHHHHHHHHhhHHHHHHHH
Q 016839 303 HIRVLVNKLEIQIEALLNNADFALREEDV---VKLAIEEIRKRLEVFMETIEVLCDHA 357 (381)
Q Consensus 303 ti~~lV~rL~~~ie~~~~~v~f~l~~~~~---v~~~v~eL~k~~~~~~~~Ld~Lee~V 357 (381)
.+..+=..+.+.-+-|..+++-.+++++. +..-.++|......|..+=..|.++.
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444455555566666677777777654 55556677777777777766666654
No 74
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=20.23 E-value=3.1e+02 Score=25.12 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 016839 336 IEEIRKRLEVFMETIEVLCDHADK 359 (381)
Q Consensus 336 v~eL~k~~~~~~~~Ld~Lee~V~~ 359 (381)
++..++.+..|+++|+|||.|+-.
T Consensus 107 lq~mr~~ln~FR~qm~dlE~~l~~ 130 (179)
T PF14723_consen 107 LQQMRRSLNSFREQMMDLELHLMR 130 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666788999999999999998754
No 75
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.10 E-value=1.5e+02 Score=18.10 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=14.6
Q ss_pred HHHHHhhHHHHHHHHHHHHH
Q 016839 343 LEVFMETIEVLCDHADKCSR 362 (381)
Q Consensus 343 ~~~~~~~Ld~Lee~V~~cf~ 362 (381)
++.++.-+.+||.+...|..
T Consensus 3 ~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECRR 22 (23)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34566778888888888864
No 76
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=20.05 E-value=7.6e+02 Score=23.50 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=23.1
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 016839 187 VLFQSVYKQQVLMLERLQKRKRKLDKKL 214 (381)
Q Consensus 187 ~~f~~~~~~~~~ll~~l~s~~~kl~~kL 214 (381)
..|+.=|+....-|+++.+.++|+++|=
T Consensus 115 Kkyq~E~k~k~dsLeK~~seLKK~RRKs 142 (226)
T cd07645 115 KRYQTEHKNKLDSLEKSQADLKKIRRKS 142 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4577777777778999999999999884
No 77
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=20.01 E-value=7.6e+02 Score=28.32 Aligned_cols=61 Identities=21% Similarity=0.222 Sum_probs=32.8
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 016839 295 YVKIMDMDHIRVLVNKLEIQIEALLNNADFALREEDVVKLAIEEIRKRLEVFMETIEVLCD 355 (381)
Q Consensus 295 ~illkdldti~~lV~rL~~~ie~~~~~v~f~l~~~~~v~~~v~eL~k~~~~~~~~Ld~Lee 355 (381)
-+...+++++++.-..|.+.++...+..+-+....++...+++.++.....+-..++.|++
T Consensus 455 e~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 455 ESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888888655544443333223333444444444444444444333
Done!