Query 016839
Match_columns 381
No_of_seqs 126 out of 165
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 04:38:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4adz_A CSOR; transcription, co 62.6 58 0.002 27.3 9.6 54 273-327 55-113 (136)
2 3twe_A Alpha4H; unknown functi 50.9 9.8 0.00033 22.4 2.1 17 200-216 10-26 (27)
3 4dnd_A Syntaxin-10, SYN10; str 50.1 39 0.0013 28.0 6.6 28 332-359 65-92 (130)
4 1ez3_A Syntaxin-1A; three heli 39.9 97 0.0033 24.6 7.5 61 298-359 18-79 (127)
5 3mq9_A Bone marrow stromal ant 37.6 1.1E+02 0.0038 29.9 8.9 36 332-367 395-430 (471)
6 2hh7_A Hypothetical protein CS 34.7 81 0.0028 25.8 6.0 76 272-350 12-92 (119)
7 1fxk_A Prefoldin; archaeal pro 32.2 64 0.0022 24.9 5.0 34 332-365 63-96 (107)
8 2dfs_A Myosin-5A; myosin-V, in 32.1 2.5E+02 0.0087 31.2 11.4 62 298-359 976-1048(1080)
9 3t98_B Nucleoporin NUP58/NUP45 31.9 53 0.0018 25.7 4.3 31 332-362 10-40 (93)
10 2akf_A Coronin-1A; coiled coil 28.6 1.1E+02 0.0036 18.9 4.3 12 332-343 11-22 (32)
11 2y44_A GARP, glutamic acid/ala 24.3 1.2E+02 0.0042 26.6 5.6 34 336-369 149-182 (184)
12 3mtu_E Head morphogenesis prot 23.0 98 0.0033 23.4 4.1 27 332-358 28-54 (77)
13 3q5w_A Protein CUT8; proteasom 20.8 4.7E+02 0.016 23.9 9.1 142 70-249 61-203 (245)
14 3us6_A Histidine-containing ph 20.5 3.7E+02 0.013 22.3 12.5 83 89-179 25-108 (153)
15 1deq_A Fibrinogen (alpha chain 20.4 2.9E+02 0.0098 27.0 7.9 64 302-365 67-130 (390)
16 3c3f_A Alpha/beta peptide with 20.3 1.2E+02 0.0043 19.1 3.5 25 335-359 2-26 (34)
No 1
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=62.64 E-value=58 Score=27.34 Aligned_cols=54 Identities=15% Similarity=0.200 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhHHhhhhh-hcchhH--HHhhhhhHHHHHHHHHHHH--HhHhhhhhhhhh
Q 016839 273 WNSYEKALKGQKELMSTM-QIGAYV--KIMDMDHIRVLVNKLEIQI--EALLNNADFALR 327 (381)
Q Consensus 273 ~~~~e~al~~q~e~~~~~-~kGt~i--llkdldti~~lV~rL~~~i--e~~~~~v~f~l~ 327 (381)
+++..+ +.+|++-+.+| ..|.|- ++.-|-.++..++++...| +|+...+.-+++
T Consensus 55 l~RLkR-IeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~~ILe~Hl~~CV~~ai~ 113 (136)
T 4adz_A 55 LKRLRR-IEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALQLLEEHLRHCVADAAL 113 (136)
T ss_dssp HHHHHH-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344 77777777773 355542 5566666666666666554 344344443433
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=50.91 E-value=9.8 Score=22.37 Aligned_cols=17 Identities=71% Similarity=0.876 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhhhhh
Q 016839 200 LERLQKRKRKLDKKLKS 216 (381)
Q Consensus 200 l~~l~s~~~kl~~kL~~ 216 (381)
++.|+.+++|+++||+.
T Consensus 10 ledlqerlrklrkklrs 26 (27)
T 3twe_A 10 LEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 67777888888888763
No 3
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=50.10 E-value=39 Score=28.00 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCDHADK 359 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee~V~~ 359 (381)
+...-+||+..+.....+|++|++-|.-
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666777777777777766664
No 4
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=39.89 E-value=97 Score=24.58 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=38.7
Q ss_pred HhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhh-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 016839 298 IMDMDHIRVLVNKLEIQIEALLNNADFALREE-DVVKLAIEEIRKRLEVFMETIEVLCDHADK 359 (381)
Q Consensus 298 lkdldti~~lV~rL~~~ie~~~~~v~f~l~~~-~~v~~~v~eL~k~~~~~~~~Ld~Lee~V~~ 359 (381)
-.+|+.|+..|.+|...=+..+..+. +...- +.+...+.++.+........|+.|+.+...
T Consensus 18 ~~~i~~i~~~v~~l~~~~~~~L~~~~-~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 18 RGFIDKIAENVEEVKRKHSAILASPN-PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666655554444332 11111 127777888888888889999998887654
No 5
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=37.60 E-value=1.1e+02 Score=29.94 Aligned_cols=36 Identities=6% Similarity=0.051 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCDHADKCSRDIRRA 367 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~ra 367 (381)
.+.+..+|.+......+++-.+|.|+.-|-||++.-
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMAL 430 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHH
Confidence 667788888888888888899999999999988753
No 6
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=34.68 E-value=81 Score=25.82 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhHHhhhh-hhcchhH--HHhhhhhHHHHHHHHHHHH--HhHhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 016839 272 LWNSYEKALKGQKELMST-MQIGAYV--KIMDMDHIRVLVNKLEIQI--EALLNNADFALREEDVVKLAIEEIRKRLEVF 346 (381)
Q Consensus 272 ~~~~~e~al~~q~e~~~~-~~kGt~i--llkdldti~~lV~rL~~~i--e~~~~~v~f~l~~~~~v~~~v~eL~k~~~~~ 346 (381)
++++..+ +.+|++-+.+ ...|.|- ++.-|-.++..++++...| +|+...+.-+.+.++ -.+.++||.+-. +|
T Consensus 12 ll~RLkR-IeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~~ILe~HL~~Cv~~a~~~~~-~~e~ieEl~~~i-k~ 88 (119)
T 2hh7_A 12 ALNRLKT-VRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFSTAVLDGH-GQAAIEELIDAV-KF 88 (119)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCSSTTH-HHHHHHHHHHTT-CC
T ss_pred HHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCc-hHHHHHHHHHHH-HH
Confidence 4444445 8888888888 3466652 6788888888888887766 455555544443322 334455555444 44
Q ss_pred HhhH
Q 016839 347 METI 350 (381)
Q Consensus 347 ~~~L 350 (381)
.+-|
T Consensus 89 ~k~~ 92 (119)
T 2hh7_A 89 TPAL 92 (119)
T ss_dssp ----
T ss_pred HHhc
Confidence 4333
No 7
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.23 E-value=64 Score=24.94 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCDHADKCSRDIR 365 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~ 365 (381)
+.++...|.+..+.+...++.|+++...+=..+.
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~ 96 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555444444444444444444433333
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.14 E-value=2.5e+02 Score=31.15 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=36.5
Q ss_pred HhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhh-----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 016839 298 IMDMDHIRVLVNKLEIQIEALLNNADFALREED-----------VVKLAIEEIRKRLEVFMETIEVLCDHADK 359 (381)
Q Consensus 298 lkdldti~~lV~rL~~~ie~~~~~v~f~l~~~~-----------~v~~~v~eL~k~~~~~~~~Ld~Lee~V~~ 359 (381)
.+|.+.....|..|.++++......+-..++.+ ++++.+..|.+.-..+++++++||..+-.
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666777777665544433332211 15566677777777778888888754433
No 9
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=31.89 E-value=53 Score=25.71 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCDHADKCSR 362 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~ 362 (381)
....+.++.+....++.++|+||+|+.-...
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~ 40 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQAN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5567888999999999999999999877653
No 10
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=28.60 E-value=1.1e+02 Score=18.87 Aligned_cols=12 Identities=17% Similarity=0.578 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 016839 332 VKLAIEEIRKRL 343 (381)
Q Consensus 332 v~~~v~eL~k~~ 343 (381)
+.-+|++|.+..
T Consensus 11 l~~ivq~lq~r~ 22 (32)
T 2akf_A 11 LNAIVQKLQERL 22 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555554443
No 11
>2y44_A GARP, glutamic acid/alanine-rich protein; membrane protein, surface protein; 1.65A {Trypanosoma congolense}
Probab=24.29 E-value=1.2e+02 Score=26.65 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 016839 336 IEEIRKRLEVFMETIEVLCDHADKCSRDIRRART 369 (381)
Q Consensus 336 v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~raR~ 369 (381)
-++|++..-.|...|+.||+||+.--+.-..++.
T Consensus 149 ~~~lr~~~~~~~~~l~~LE~~~~~a~~a~~~Ae~ 182 (184)
T 2y44_A 149 ADDIREHGAVFVKGLKSLEDDVRTAGEAKYEAEK 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6778888889999999999999987666555554
No 12
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=22.96 E-value=98 Score=23.40 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCDHAD 358 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee~V~ 358 (381)
--+.+++|+-+--.|.+.+|+||+.+.
T Consensus 28 ~~~~~~~~~~~~~~~EKTIDDLEDkL~ 54 (77)
T 3mtu_E 28 RTEALQQLRVNYGSFVSEYNDLEEKVA 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447789999999999999999998764
No 13
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=20.79 E-value=4.7e+02 Score=23.89 Aligned_cols=142 Identities=8% Similarity=0.009 Sum_probs=84.0
Q ss_pred CCChhhHHHHHHhhhcCCHHHHHHHHhhcccccccchhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q 016839 70 SLSFDSLKEVTGSLLEMNQEVVKVILECKKDIWNNQDLFGLVEDYFETSIKTLDFCTVLENCLKRARNSQLIIQLAVKQF 149 (381)
Q Consensus 70 ~lSl~~~~~~~~~lLe~~qe~~~~il~~~~~~w~~~~l~~Lv~~YFd~S~kaldiC~aL~~~I~~~R~~~~~i~~al~~l 149 (381)
.|+=+.++.++..|++.|+|+...|...... |+++ ++++-++..+. .+..+|
T Consensus 61 tLdk~qL~sLL~~L~~~HPel~qeI~~~~P~----Psl~---------------------~al~~L~~~~~---~i~~a~ 112 (245)
T 3q5w_A 61 YSDKQQLFTILLQCVEKHPDLARDIRGILPA----PSMD---------------------TCVETLRKLLI---NLNDSF 112 (245)
T ss_dssp SSCHHHHHHHHHHHHHHCTHHHHHHHTTSCC----CCHH---------------------HHHHHHHHHHH---HHHHTS
T ss_pred hCCHHHHHHHHHHHHHhCchHHHHHhhcCCC----CCHH---------------------HHHHHHHHHHH---HHHHhC
Confidence 4666789999999999999999999887532 3333 23333333332 233556
Q ss_pred cchhhhhhhccHHHHHHHHHHHHhhHhcCCCCCHHHh-hHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhHhhHHH
Q 016839 150 DEEVELQEVVDEKRYVRTLDELKKFKDAGDPFTEEFF-VLFQSVYKQQVLMLERLQKRKRKLDKKLKSMKTWRMVSNVLF 228 (381)
Q Consensus 150 ~~~~~~~~~~~~~~~~ra~~~L~~f~~~~npf~~~~~-~~f~~~~~~~~~ll~~l~s~~~kl~~kL~~~r~~~~~s~~~~ 228 (381)
+-.. +..++=.|.|.+..|.+|..+..-|...|. -+-.... ..-.-|..++... .++|+.-..--+..+
T Consensus 113 PY~~---~~~dDYaY~RVK~~L~eFl~~L~Df~~~fLPP~e~q~~-~SL~FLd~aT~iI------h~LP~w~~~s~n~~k 182 (245)
T 3q5w_A 113 PYGG---DKRGDYAFNRIREKYMAVLHALNDMVPCYLPPYSTCFE-KNITFLDAATNVV------HELPEFHNPNHNVYK 182 (245)
T ss_dssp CSSS---CTTSHHHHHHHHHHHHHHHHHHHHHGGGGSTBTCCCHH-HHHHHHHHHHHHH------HTSCCCSSSGGGHHH
T ss_pred CCCC---CCccchhHHHHHHHHHHHHHHHHHhhhccCCCccccHH-HHHHHHHHHHHHH------HHCCCCCchhhHHHH
Confidence 5432 224666788998888888866543433220 0000000 1111234444444 234544444567777
Q ss_pred HHHHHHHHHHHHHHHHhhcCh
Q 016839 229 VSTFVAVLIFSVVAAAIAAPP 249 (381)
Q Consensus 229 ~~~~~~v~V~~vv~aai~~~~ 249 (381)
-.++--+.-+|+++.-.++..
T Consensus 183 ~~ayeqis~aW~~vi~ea~kr 203 (245)
T 3q5w_A 183 SQAYYELTGAWLVVLRQLEDR 203 (245)
T ss_dssp HHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 888899999999988886654
No 14
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=20.47 E-value=3.7e+02 Score=22.28 Aligned_cols=83 Identities=14% Similarity=0.239 Sum_probs=50.8
Q ss_pred HHHHHHHhhcccccccch-hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchhhhhhhccHHHHHHH
Q 016839 89 EVVKVILECKKDIWNNQD-LFGLVEDYFETSIKTLDFCTVLENCLKRARNSQLIIQLAVKQFDEEVELQEVVDEKRYVRT 167 (381)
Q Consensus 89 e~~~~il~~~~~~w~~~~-l~~Lv~~YFd~S~kaldiC~aL~~~I~~~R~~~~~i~~al~~l~~~~~~~~~~~~~~~~ra 167 (381)
+.+..|.+..++ .+|+ +..+|..|++.+.+.+.--. ..+.+--..+.-+....|.|...+. ++|-.++..+
T Consensus 25 ~~f~qL~~L~~~--~~~~~~~ell~~Fl~d~~~~l~~L~---~al~~~~~D~~~l~~~aH~LKGss~---~lGa~~l~~~ 96 (153)
T 3us6_A 25 GQFLQLQQLQDE--NNPEFVFEVVSLFFDDSERILKDLS---FAVDQQSIDFKKVDAHVHQFKGSSA---SIGAQRVKNS 96 (153)
T ss_dssp HHHHHHHHTCBT--TBTTHHHHHHHHHHHHHHHHHHHHH---HHHTSSSCCHHHHHHHHHHHHHHHH---HHTCHHHHHH
T ss_pred HHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCccHHHHHHHHHHHHHHHH---HhcHHHHHHH
Confidence 456777776543 3454 58999999999988764322 2222100034556778888865442 3566777777
Q ss_pred HHHHHhhHhcCC
Q 016839 168 LDELKKFKDAGD 179 (381)
Q Consensus 168 ~~~L~~f~~~~n 179 (381)
...|-.....+|
T Consensus 97 c~~lE~~~~~~~ 108 (153)
T 3us6_A 97 CVAFRNFCEEQN 108 (153)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 777776655554
No 15
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.39 E-value=2.9e+02 Score=27.03 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 016839 302 DHIRVLVNKLEIQIEALLNNADFALREEDVVKLAIEEIRKRLEVFMETIEVLCDHADKCSRDIR 365 (381)
Q Consensus 302 dti~~lV~rL~~~ie~~~~~v~f~l~~~~~v~~~v~eL~k~~~~~~~~Ld~Lee~V~~cf~~I~ 365 (381)
..|+.|-.+|.+........-++-..--+.++..+++...+...+.+-.++||+|+--.=.+|+
T Consensus 67 ~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~ 130 (390)
T 1deq_A 67 SRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVI 130 (390)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
No 16
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.34 E-value=1.2e+02 Score=19.14 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 016839 335 AIEEIRKRLEVFMETIEVLCDHADK 359 (381)
Q Consensus 335 ~v~eL~k~~~~~~~~Ld~Lee~V~~ 359 (381)
-|.+|..+++.+...-.+||.+|..
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3678888888888888889888865
Done!