Query 016839
Match_columns 381
No_of_seqs 126 out of 165
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 04:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016839.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016839hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lvfa_ a.47.2.1 (A:) Syntaxin 56.6 20 0.0014 26.7 7.6 29 332-360 40-68 (106)
2 d1ez3a_ a.47.2.1 (A:) Syntaxin 51.7 24 0.0017 26.5 7.5 61 298-359 16-77 (124)
3 d1vcta1 a.7.12.1 (A:9-107) Hyp 22.3 1.2E+02 0.0087 21.1 6.8 23 304-326 6-28 (99)
4 d1h6ga1 a.24.9.1 (A:377-507) a 21.5 1.6E+02 0.012 22.2 9.0 91 106-210 39-129 (131)
5 d2htna1 a.25.1.1 (A:1-158) Bac 20.4 1.5E+02 0.011 22.1 7.6 24 332-355 120-143 (158)
6 d1sumb_ a.7.12.1 (B:) PhoU hom 18.4 2.2E+02 0.016 22.6 8.8 23 295-317 38-60 (225)
7 d1seta1 a.2.7.1 (A:1-110) Sery 17.7 1.7E+02 0.012 20.9 8.6 29 332-360 69-97 (110)
8 d1jgca_ a.25.1.1 (A:) Bacterio 16.9 2E+02 0.015 21.5 7.5 19 332-350 120-138 (160)
9 d1wrda1 a.7.8.1 (A:215-307) Ta 15.9 1.4E+02 0.01 21.0 5.7 52 297-353 6-57 (93)
10 d1u5ta1 a.4.5.54 (A:20-164) Va 14.4 1.1E+02 0.0077 24.0 4.9 61 106-174 65-125 (145)
No 1
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=56.62 E-value=20 Score=26.66 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCDHADKC 360 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee~V~~c 360 (381)
+...-+||+..+.....+|++|++-|.-.
T Consensus 40 ~~~~~~eL~~~l~siewdL~dLe~av~~v 68 (106)
T d1lvfa_ 40 IDWTTNELRNNLRSIEWDLEDLDETISIV 68 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 66778888999999999999999888754
No 2
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=51.73 E-value=24 Score=26.47 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=39.8
Q ss_pred HhhhhhHHHHHHHHHHHHHhHhhhhhhhhhh-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 016839 298 IMDMDHIRVLVNKLEIQIEALLNNADFALRE-EDVVKLAIEEIRKRLEVFMETIEVLCDHADK 359 (381)
Q Consensus 298 lkdldti~~lV~rL~~~ie~~~~~v~f~l~~-~~~v~~~v~eL~k~~~~~~~~Ld~Lee~V~~ 359 (381)
-++|+.|+..|.+|.+.=...+..+. +... .+.+...+.++.+........|+.|++++..
T Consensus 16 r~~I~~i~~~v~~i~~~~~~~l~~~~-~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~ 77 (124)
T d1ez3a_ 16 RGFIDKIAENVEEVKRKHSAILASPN-PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 77 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666777666655443333221 1111 1127788999999999999999999988765
No 3
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.26 E-value=1.2e+02 Score=21.12 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhh
Q 016839 304 IRVLVNKLEIQIEALLNNADFAL 326 (381)
Q Consensus 304 i~~lV~rL~~~ie~~~~~v~f~l 326 (381)
+...+.++.+.+++|...+--++
T Consensus 6 i~~~l~~M~~~~~~ml~~a~~a~ 28 (99)
T d1vcta1 6 VKEIFIEMKDTVELMVDLAYASL 28 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544443333
No 4
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.53 E-value=1.6e+02 Score=22.25 Aligned_cols=91 Identities=8% Similarity=0.079 Sum_probs=53.6
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchhhhhhhccHHHHHHHHHHHHhhHhcCCCCCHHH
Q 016839 106 DLFGLVEDYFETSIKTLDFCTVLENCLKRARNSQLIIQLAVKQFDEEVELQEVVDEKRYVRTLDELKKFKDAGDPFTEEF 185 (381)
Q Consensus 106 ~l~~Lv~~YFd~S~kaldiC~aL~~~I~~~R~~~~~i~~al~~l~~~~~~~~~~~~~~~~ra~~~L~~f~~~~npf~~~~ 185 (381)
++..-...|=+++.++.+.|+.+.. +.--......++.+-.+++. -.+|...|=+.|. .||-+.-.
T Consensus 39 ~~~e~a~~F~eh~~~l~e~a~l~~~-~s~ne~~v~~i~~aa~~l~~--------L~PQVi~Aar~l~-----~~P~sk~a 104 (131)
T d1h6ga1 39 EVKEYAQVFREHANKLIEVANLACS-ISNNEEGVKLVRMSASQLEA--------LCPQVINAALALA-----AKPQSKLA 104 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH-----HCTTCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHH--------HChHHHHHHHHHH-----hCCCcHHH
Confidence 3444466677899999999987622 23222333444444444432 1134444444444 37877665
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHH
Q 016839 186 FVLFQSVYKQQVLMLERLQKRKRKL 210 (381)
Q Consensus 186 ~~~f~~~~~~~~~ll~~l~s~~~kl 210 (381)
...|..+.++....++.|....+.|
T Consensus 105 ~en~e~~~~~W~~~v~~L~~~vd~i 129 (131)
T d1h6ga1 105 QENMDLFKEQWEKQVRVLTDAVDDI 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777777777777777666544
No 5
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=20.43 E-value=1.5e+02 Score=22.07 Aligned_cols=24 Identities=0% Similarity=0.140 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCD 355 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee 355 (381)
+...+++-.++...|.+.|+.++.
T Consensus 120 l~~il~eee~h~~~l~~~L~~~~~ 143 (158)
T d2htna1 120 MIEILRDEEGHIDWLETELDLIQK 143 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666543
No 6
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=18.40 E-value=2.2e+02 Score=22.57 Aligned_cols=23 Identities=13% Similarity=0.175 Sum_probs=13.4
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHh
Q 016839 295 YVKIMDMDHIRVLVNKLEIQIEA 317 (381)
Q Consensus 295 ~illkdldti~~lV~rL~~~ie~ 317 (381)
.-+.+++-..+..|++++.+|+.
T Consensus 38 ~~~a~~V~~~d~~Id~l~~~I~~ 60 (225)
T d1sumb_ 38 ESLAREVIADEEVVDQMEVEIQE 60 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 33445555666666666666654
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=17.71 E-value=1.7e+02 Score=20.91 Aligned_cols=29 Identities=3% Similarity=-0.040 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 016839 332 VKLAIEEIRKRLEVFMETIEVLCDHADKC 360 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~Ld~Lee~V~~c 360 (381)
+.+-+++|+.....+.+.+.++++.++..
T Consensus 69 l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 69 LIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555443
No 8
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=16.86 E-value=2e+02 Score=21.54 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 016839 332 VKLAIEEIRKRLEVFMETI 350 (381)
Q Consensus 332 v~~~v~eL~k~~~~~~~~L 350 (381)
+...++|-.++..-|.+.|
T Consensus 120 l~~~l~eee~h~~~l~~~l 138 (160)
T d1jgca_ 120 FESLITDEEGHVDFLETQI 138 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 9
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.93 E-value=1.4e+02 Score=21.03 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=30.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 016839 297 KIMDMDHIRVLVNKLEIQIEALLNNADFALREEDVVKLAIEEIRKRLEVFMETIEVL 353 (381)
Q Consensus 297 llkdldti~~lV~rL~~~ie~~~~~v~f~l~~~~~v~~~v~eL~k~~~~~~~~Ld~L 353 (381)
+..||+.|+.-|+-|.+.+.+..-. +....=.+.++||...|......+-.|
T Consensus 6 l~~eLe~v~~n~~lL~eML~~~~p~-----~~~~~d~eli~eL~~~C~~~q~~i~~l 57 (93)
T d1wrda1 6 LRSELEMVSGNVRVMSEMLTELVPT-----QAEPADLELLQELNRTCRAMQQRVLEL 57 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTT-----TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-----CCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888653211 111112356666666666655555444
No 10
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.36 E-value=1.1e+02 Score=23.96 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=39.4
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchhhhhhhccHHHHHHHHHHHHhh
Q 016839 106 DLFGLVEDYFETSIKTLDFCTVLENCLKRARNSQLIIQLAVKQFDEEVELQEVVDEKRYVRTLDELKKF 174 (381)
Q Consensus 106 ~l~~Lv~~YFd~S~kaldiC~aL~~~I~~~R~~~~~i~~al~~l~~~~~~~~~~~~~~~~ra~~~L~~f 174 (381)
.+..+=+-|++-+++-.|+|.+-+.. .-+...+..+...+.... ..+++.+.||.+.|+-+
T Consensus 65 ~~lg~gDFYyEL~VqIvEvC~~tr~~----NGGli~l~el~~~~~~~~----~is~dDi~rAi~~L~~L 125 (145)
T d1u5ta1 65 HLFTVNDFYYEVCLKVIEICRQTKDM----NGGVISFQELEKVHFRKL----NVGLDDLEKSIDMLKSL 125 (145)
T ss_dssp GGTTHHHHHHHHHHHHHHHHHHHTTT----SSSCEEHHHHHHTTTTTT----TCCHHHHHHHHHHHTTT
T ss_pred ccccccchHHHHHHHHHHHHHHhhhc----CCCEeEHHHHHHHHHhhc----CCCHHHHHHHHHhhccc
Confidence 45567788999999999999987642 111233333333333322 26778888888887765
Done!