Query 016841
Match_columns 381
No_of_seqs 147 out of 1134
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 04:40:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.8 3.6E-20 1.2E-24 187.1 4.3 325 26-380 108-454 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.6 1.9E-15 6.4E-20 151.1 15.3 310 26-380 107-435 (491)
3 1pw4_A Glycerol-3-phosphate tr 98.5 3.4E-07 1.2E-11 89.4 9.8 84 27-116 119-203 (451)
4 2gfp_A EMRD, multidrug resista 98.2 8.7E-07 3E-11 84.7 5.4 83 26-114 87-169 (375)
5 3o7q_A L-fucose-proton symport 98.1 4.2E-05 1.4E-09 74.2 15.4 85 26-116 116-226 (438)
6 4gc0_A D-xylose-proton symport 96.4 0.012 4.1E-07 57.6 9.7 82 25-112 124-213 (491)
7 3o7q_A L-fucose-proton symport 95.6 0.058 2E-06 51.7 10.6 100 258-380 67-166 (438)
8 1pw4_A Glycerol-3-phosphate tr 95.5 0.1 3.4E-06 50.1 11.9 74 296-380 95-168 (451)
9 4aps_A DI-OR tripeptide H+ sym 94.9 0.022 7.7E-07 55.8 5.1 91 26-123 385-475 (491)
10 2gfp_A EMRD, multidrug resista 93.5 0.25 8.4E-06 46.3 8.9 95 259-379 42-136 (375)
11 2cfq_A Lactose permease; trans 92.9 0.024 8.1E-07 54.8 0.8 42 331-372 312-353 (417)
12 2xut_A Proton/peptide symporte 92.8 0.051 1.8E-06 53.7 3.0 92 26-123 404-506 (524)
13 2cfq_A Lactose permease; trans 92.2 0.02 6.9E-07 55.3 -0.7 76 37-118 322-398 (417)
14 4gc0_A D-xylose-proton symport 78.7 8.4 0.00029 36.9 9.6 51 329-379 124-174 (491)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.78 E-value=3.6e-20 Score=187.13 Aligned_cols=325 Identities=18% Similarity=0.299 Sum_probs=211.5
Q ss_pred hhHHHHHHHHHHHhcccccccccccccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhheeEeecccchhHHHHH
Q 016841 26 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLIS 105 (381)
Q Consensus 26 ~~~~~~~~L~lia~G~G~~k~nv~~~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiGa~~a~~~~~~i~~~~g~~~~F~i~ 105 (381)
+.+.++++..+..+|.|+..|+..++++|.+++++. .+..+.|++++.+.|+|..+++.+.+++.++.||++.|.+.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 467788888999999999999999999999986542 23577899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccceeecCCCCCchhhHHHHHHHHHHhccccCCCCcchhhhhhhhcccCCccccCCCCc-------
Q 016841 106 SVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQ------- 178 (381)
Q Consensus 106 ~i~m~~~l~~f~~g~~~y~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 178 (381)
++..+++.+.++..++.+++++|++++..+..+.+..+.++++.+.+ +.....+.... .. ......+.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 261 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGG-VS-AAYALVNIPTLGIVAGL 261 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHH-HH-HHHTGGGTTTTCSSHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhh-hh-hhhhhcccchhhhhhhh
Confidence 98888888877766665554445444433333333333333221000 00000000000 00 0000000000
Q ss_pred -------------cch--hhhhccCCCCCCCCCCcccccchhhHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHhhcc
Q 016841 179 -------------FRC--LDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYM 243 (381)
Q Consensus 179 -------------~~~--L~~a~~~~~~~~~~~~~~~~~~~~vee~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~qa~~~ 243 (381)
..| +|+++. .+++.+++++|+.++..+++.....++..+.|..+.+..|+.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (524)
T 2xut_A 262 CCAMVLVMGFVGAGASLQLERARK------------SHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM 329 (524)
T ss_dssp HHHHHHHHHHHHTGGGTHHHHSCC------------SCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHS
T ss_pred hhhhhhhhcccccchhhHHhhhhc------------cccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhc
Confidence 012 222211 12223456677788888888888889999999888888887777
Q ss_pred CCCcCCccccCCcccccchHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 016841 244 DPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQ 323 (381)
Q Consensus 244 d~~i~g~~ip~~~~~~~~~~~ii~~~p~~~~~~~p~~~k~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~e~~~~~~~~~ 323 (381)
|.+. + ++...+..++.+..++..|+.+++..|..+|+++ ++++.+++.+|+++.+++++..+..+..+ ..
T Consensus 330 ~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~ 399 (524)
T 2xut_A 330 VKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLSWIVVGTIQLMM----DG 399 (524)
T ss_dssp CCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT----TT
T ss_pred CCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHh----cC
Confidence 6553 2 4667788888889999999999988787777643 35677788999999998887765543111 11
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 016841 324 SPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT 380 (381)
Q Consensus 324 ~g~~~~s~~wlv~~y~l~~~~E~~~~~~glef~~~~aP~~m~s~~~g~~~l~~a~G~ 380 (381)
+ ...+.+|+++.+++.++++.+..+...+++.+.+|+++||.++|++.+...+|+
T Consensus 400 ~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 454 (524)
T 2xut_A 400 G--SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGN 454 (524)
T ss_dssp T--CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHH
T ss_pred C--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHH
Confidence 1 246789999999999999999999999999999999999999999988877664
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.64 E-value=1.9e-15 Score=151.08 Aligned_cols=310 Identities=18% Similarity=0.239 Sum_probs=205.9
Q ss_pred hhHHHHHHHHHHHhcccccccccccccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhheeEeecccchhHHHHH
Q 016841 26 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLIS 105 (381)
Q Consensus 26 ~~~~~~~~L~lia~G~G~~k~nv~~~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiGa~~a~~~~~~i~~~~g~~~~F~i~ 105 (381)
+...++++..+..+|.|...|...++++|.+++++. +|...+++++.+.|+|..+++.+.+++.++.||++.|.++
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 456788888999999999999999999999987553 3678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccceeecC--CCCCch--hhHHHHHH--------------HHHHhccccCCCCcchhhhhhhhccc
Q 016841 106 SVATLIGLIALAIGKPFYRIQQ--PGESPL--VRVAQVIV--------------VAIKNRKLSLPDNPEELYEINKIERV 167 (381)
Q Consensus 106 ~i~m~~~l~~f~~g~~~y~~~~--p~g~pl--~~~~~vl~--------------~a~~~~~~~~~~~~~~~~~~~~~~~~ 167 (381)
++..+++++.++..++++..++ +..++. .+..+... ........+ .+..........
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--- 257 (491)
T 4aps_A 183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS--LPAYINLLTIVA--- 257 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC--TTHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhhhhHHH---
Confidence 8888888877765544433221 111111 11111000 000000000 000000000000
Q ss_pred CCccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHhhc-cCCC
Q 016841 168 GTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAY-MDPR 246 (381)
Q Consensus 168 ~~~~~~~~~~~~~~L~~a~~~~~~~~~~~~~~~~~~~~vee~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~qa~~-~d~~ 246 (381)
.... ..+..+ .|+. .....+++++..+..++++....+|..+.+..+.+..+..+ .+.+
T Consensus 258 ---~~~~----~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (491)
T 4aps_A 258 ---IAIP----VFYFAW------------MISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS 317 (491)
T ss_dssp ---HHHH----HHHHHH------------HC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS
T ss_pred ---HHHH----HHHHHH------------Hhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC
Confidence 0000 000000 0000 01123567778888899999999999999998877766643 4443
Q ss_pred cCCccccCCcccccchHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 016841 247 LGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPP 326 (381)
Q Consensus 247 i~g~~ip~~~~~~~~~~~ii~~~p~~~~~~~p~~~k~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~e~~~~~~~~~~g~ 326 (381)
. .+...+..++.+..++..|+..++. +|.+++ .+...+++.+|+++.+++++..+..... ..++
T Consensus 318 ~----~~~~~~~~~~~~~~~~~~~~~~~l~----~r~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-- 381 (491)
T 4aps_A 318 W----FPVSWFQSLNPLFIMLYTPFFAWLW----TAWKKN--QPSSPTKFAVGLMFAGLSFLLMAIPGAL----YGTS-- 381 (491)
T ss_dssp S----SCSGGGTTHHHHHHHHHHHHHHHHH----HHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH----CCCC--
T ss_pred c----cCHHHHhccchHHHHHHHHHHHHHH----HHHhcc--CCCchHHHHHHHHHHHHHHHHHHHHHHh----cCCC--
Confidence 2 5677888889999999999988864 444432 3566788999999999998877766522 1111
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 016841 327 KQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT 380 (381)
Q Consensus 327 ~~~s~~wlv~~y~l~~~~E~~~~~~glef~~~~aP~~m~s~~~g~~~l~~a~G~ 380 (381)
.+.+.+|+++.+++.++++.+..+...+++.+..|++.|+.++|++.....+|+
T Consensus 382 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 435 (491)
T 4aps_A 382 GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGS 435 (491)
T ss_dssp TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999988776653
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.49 E-value=3.4e-07 Score=89.39 Aligned_cols=84 Identities=8% Similarity=0.056 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHhcccccccccccccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhheeEeeccc-chhHHHHH
Q 016841 27 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG-WWLGFLIS 105 (381)
Q Consensus 27 ~~~~~~~L~lia~G~G~~k~nv~~~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiGa~~a~~~~~~i~~~~g-~~~~F~i~ 105 (381)
.+.++++..+..+|.|..-+...+++.|.++++ +|...+.++..+.++|..+++.+.+++-+..| |++.|.+.
T Consensus 119 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~ 192 (451)
T 1pw4_A 119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMP 192 (451)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHH
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 456777888899999999999999999999753 37889999999999999999999988878888 99999988
Q ss_pred HHHHHHHHHHH
Q 016841 106 SVATLIGLIAL 116 (381)
Q Consensus 106 ~i~m~~~l~~f 116 (381)
++..++..++.
T Consensus 193 ~~~~~~~~~~~ 203 (451)
T 1pw4_A 193 AFCAILVALFA 203 (451)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77665544433
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.23 E-value=8.7e-07 Score=84.70 Aligned_cols=83 Identities=8% Similarity=0.032 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHhcccccccccccccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhheeEeecccchhHHHHH
Q 016841 26 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLIS 105 (381)
Q Consensus 26 ~~~~~~~~L~lia~G~G~~k~nv~~~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiGa~~a~~~~~~i~~~~g~~~~F~i~ 105 (381)
+.+.++++..+..+|.|...+...++..|.+++++ |.+.+.++..+.++|..+++.+.+++.++.||+..|.+.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 45667777788899999999999999999886543 678899999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 016841 106 SVATLIGLI 114 (381)
Q Consensus 106 ~i~m~~~l~ 114 (381)
++..++..+
T Consensus 161 ~~~~~~~~~ 169 (375)
T 2gfp_A 161 LVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 776666554
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.14 E-value=4.2e-05 Score=74.19 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHhcccccccccccccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhheeEe-eccc-------
Q 016841 26 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF-IDQG------- 97 (381)
Q Consensus 26 ~~~~~~~~L~lia~G~G~~k~nv~~~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiGa~~a~~~~~~i~-~~~g------- 97 (381)
+.+.++++..+..+|.|..-+...+++.|.+++++ |...+.++..+.++|..+++.+.+++. +..+
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 189 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL 189 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHH
T ss_pred cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 46778888899999999999999999999997643 677789999999999999999999887 5554
Q ss_pred ------------------chhHHHHHHHHHHHHHHHH
Q 016841 98 ------------------WWLGFLISSVATLIGLIAL 116 (381)
Q Consensus 98 ------------------~~~~F~i~~i~m~~~l~~f 116 (381)
|++.|.+.++..++..+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 190 DKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8999976665554444433
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.37 E-value=0.012 Score=57.65 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=59.6
Q ss_pred chhHHHHHHHHHHHhcccccccccccccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhheeEeec--------c
Q 016841 25 AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID--------Q 96 (381)
Q Consensus 25 ~~~~~~~~~L~lia~G~G~~k~nv~~~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiGa~~a~~~~~~i~~~--------~ 96 (381)
.+...++++-.+..+|.|+.-+....+++|..+++ +|.....++..+.++|.+++..+...+... .
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 45678888999999999999999999999877542 367777888888888888887766544322 3
Q ss_pred cchhHHHHHHHHHHHH
Q 016841 97 GWWLGFLISSVATLIG 112 (381)
Q Consensus 97 g~~~~F~i~~i~m~~~ 112 (381)
+|++.+.+..+..++.
T Consensus 198 ~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 198 GWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHTTHHHHHHH
T ss_pred hhHHHhhhhhhhhhhh
Confidence 4666666555444333
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=95.64 E-value=0.058 Score=51.68 Aligned_cols=100 Identities=11% Similarity=0.004 Sum_probs=69.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHH
Q 016841 258 PVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQ 337 (381)
Q Consensus 258 ~~~~~~~ii~~~p~~~~~~~p~~~k~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~e~~~~~~~~~~g~~~~s~~wlv~~ 337 (381)
.+...+...+..|+..++. +|.++| +-+.+|.++.+++.+..+... . .-+.++++..
T Consensus 67 ~~~~~~~~~i~~~~~G~l~----dr~g~r-------~~l~~~~~~~~~~~~~~~~~~-----~-------~~~~~~l~~~ 123 (438)
T 3o7q_A 67 QSAFYFGYFIIPIPAGILM----KKLSYK-------AGIITGLFLYALGAALFWPAA-----E-------IMNYTLFLVG 123 (438)
T ss_dssp HHHHHHHHHTTHHHHHHHH----HHSCHH-------HHHHHHHHHHHHHHHHHHHHH-----H-------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH----HHhcch-------HHHHHHHHHHHHHHHHHHhcc-----c-------cccHHHHHHH
Confidence 3344444455555555543 454321 235667777777666553321 1 2357788888
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 016841 338 YCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT 380 (381)
Q Consensus 338 y~l~~~~E~~~~~~glef~~~~aP~~m~s~~~g~~~l~~a~G~ 380 (381)
.++.|++.....+....++.+..|++.|+..+|++....++|.
T Consensus 124 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888777653
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=95.53 E-value=0.1 Score=50.10 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=57.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCchhHHHHHHHHHHH
Q 016841 296 VGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCH 375 (381)
Q Consensus 296 i~iG~~l~~ls~~~~~~~e~~~~~~~~~~g~~~~s~~wlv~~y~l~~~~E~~~~~~glef~~~~aP~~m~s~~~g~~~l~ 375 (381)
+.+|.++.+++.+..+..... .-+.++++...++.|+++....+....++.+..|++.|+..+|++...
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 163 (451)
T 1pw4_A 95 LPAGLILAAAVMLFMGFVPWA-----------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 163 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCHHH-----------HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhc-----------cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHH
Confidence 456777777776665542210 124667788899999999999999999999999999999999999888
Q ss_pred hhccC
Q 016841 376 CHLAT 380 (381)
Q Consensus 376 ~a~G~ 380 (381)
.++|.
T Consensus 164 ~~~g~ 168 (451)
T 1pw4_A 164 HNVGG 168 (451)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=94.90 E-value=0.022 Score=55.76 Aligned_cols=91 Identities=9% Similarity=0.002 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHhcccccccccccccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhheeEeecccchhHHHHH
Q 016841 26 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLIS 105 (381)
Q Consensus 26 ~~~~~~~~L~lia~G~G~~k~nv~~~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiGa~~a~~~~~~i~~~~g~~~~F~i~ 105 (381)
....+.++..+..+|.+..-|...++..|.++++. |.....+++...++|+.+++.+.+++.+ .++...|.+.
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~ 457 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYF 457 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 44567778888899999988999999999887654 6778888999999999999999998875 4777788877
Q ss_pred HHHHHHHHHHHhhcccce
Q 016841 106 SVATLIGLIALAIGKPFY 123 (381)
Q Consensus 106 ~i~m~~~l~~f~~g~~~y 123 (381)
++..+++.++++...++.
T Consensus 458 ~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 458 GLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777666666655544433
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=93.47 E-value=0.25 Score=46.27 Aligned_cols=95 Identities=13% Similarity=-0.026 Sum_probs=66.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHH
Q 016841 259 VLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQY 338 (381)
Q Consensus 259 ~~~~~~ii~~~p~~~~~~~p~~~k~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~e~~~~~~~~~~g~~~~s~~wlv~~y 338 (381)
+...+...+..|+..++ .+|.++| +-+.+|.++.+++.+..+... +.++++...
T Consensus 42 ~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~ 95 (375)
T 2gfp_A 42 GAYLLTYGVSQLFYGPI----SDRVGRR-------PVILVGMSIFMLATLVAVTTS---------------SLTVLIAAS 95 (375)
T ss_dssp HHHHHHHHHHHTTHHHH----HTTSCCC-------CCCHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHhCCc-------hhHHHHHHHHHHHHHHHHHhc---------------cHHHHHHHH
Confidence 33344444455554443 4565432 224467666666665544321 466778888
Q ss_pred HHHHHHHHHhhhhhHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 016841 339 CIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLA 379 (381)
Q Consensus 339 ~l~~~~E~~~~~~glef~~~~aP~~m~s~~~g~~~l~~a~G 379 (381)
++.|++..+..+....++.+..|++.|+..+|++....++|
T Consensus 96 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 136 (375)
T 2gfp_A 96 AMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVS 136 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877665
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=92.93 E-value=0.024 Score=54.77 Aligned_cols=42 Identities=7% Similarity=0.104 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCchhHHHHHHHH
Q 016841 331 LFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLH 372 (381)
Q Consensus 331 ~~wlv~~y~l~~~~E~~~~~~glef~~~~aP~~m~s~~~g~~ 372 (381)
.++++...++.+++.....+....+..+..|++.||..+|+.
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 445555556667766666666778999999999999988873
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=92.78 E-value=0.051 Score=53.68 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHhcccccccccccccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhheeEeecc--cc-----
Q 016841 26 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ--GW----- 98 (381)
Q Consensus 26 ~~~~~~~~L~lia~G~G~~k~nv~~~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiGa~~a~~~~~~i~~~~--g~----- 98 (381)
....+.++..+..+|.+..-|...++..|..+++. +.....+++...++|+.+++.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 34556677888888989988999999999887543 678889999999999999999999887632 23
Q ss_pred ----hhHHHHHHHHHHHHHHHHhhcccce
Q 016841 99 ----WLGFLISSVATLIGLIALAIGKPFY 123 (381)
Q Consensus 99 ----~~~F~i~~i~m~~~l~~f~~g~~~y 123 (381)
+..|.+.++..+++.++++...+++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3337777766667766666554444
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=92.24 E-value=0.02 Score=55.29 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=53.9
Q ss_pred HHhcccccccccccccccCCCCCCchhhhhhhhHHHH-HHHHHHHHHHHHhhhheeEeecccchhHHHHHHHHHHHHHHH
Q 016841 37 YSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF-YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA 115 (381)
Q Consensus 37 ia~G~G~~k~nv~~~~~dq~~~~~~~~~~~~~~~f~~-fY~~iNiGa~~a~~~~~~i~~~~g~~~~F~i~~i~m~~~l~~ 115 (381)
..++.+.+-+....+..|.++++ .+...+.+ +..+.++|+.+++.+.+++.++.||...|.+.++..+++.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~ 395 (417)
T 2cfq_A 322 HMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 34444444444556666666531 35666777 466777999999999999999899999999888877777766
Q ss_pred Hhh
Q 016841 116 LAI 118 (381)
Q Consensus 116 f~~ 118 (381)
.+.
T Consensus 396 ~~~ 398 (417)
T 2cfq_A 396 SVF 398 (417)
T ss_dssp HTT
T ss_pred HHh
Confidence 544
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=78.68 E-value=8.4 Score=36.93 Aligned_cols=51 Identities=16% Similarity=0.002 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 016841 329 ISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLA 379 (381)
Q Consensus 329 ~s~~wlv~~y~l~~~~E~~~~~~glef~~~~aP~~m~s~~~g~~~l~~a~G 379 (381)
-+.+.++..-++.|+++-...+.+..++...+|++.|+..++++.....+|
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g 174 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG 174 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence 356778888999999999999999999999999999999999888776554
Done!