Query 016842
Match_columns 381
No_of_seqs 261 out of 920
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:18:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01544 HAD-SF-IE haloacid d 100.0 8.1E-74 1.8E-78 552.3 24.4 272 63-348 1-277 (277)
2 KOG3128 Uncharacterized conser 100.0 1.5E-71 3.2E-76 520.1 12.9 287 52-352 6-298 (298)
3 PF05822 UMPH-1: Pyrimidine 5' 100.0 1E-69 2.2E-74 513.6 14.7 242 93-349 1-246 (246)
4 COG4359 Uncharacterized conser 100.0 8.6E-30 1.9E-34 229.8 12.8 201 83-330 2-207 (220)
5 PF06888 Put_Phosphatase: Puta 99.9 1.6E-27 3.5E-32 225.8 14.6 192 85-313 1-201 (234)
6 TIGR03333 salvage_mtnX 2-hydro 99.9 5E-27 1.1E-31 218.2 12.6 197 86-326 1-197 (214)
7 PRK09552 mtnX 2-hydroxy-3-keto 99.9 2.6E-25 5.7E-30 207.2 12.8 200 83-326 2-201 (219)
8 KOG3120 Predicted haloacid deh 99.9 1E-23 2.3E-28 195.3 11.8 202 79-318 8-219 (256)
9 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 3E-20 6.5E-25 166.5 15.1 187 84-311 1-188 (188)
10 KOG1615 Phosphoserine phosphat 99.8 1.9E-20 4.1E-25 170.8 11.1 203 84-334 16-224 (227)
11 PLN02954 phosphoserine phospha 99.8 1.8E-19 3.9E-24 167.2 14.5 185 85-313 13-199 (224)
12 TIGR01488 HAD-SF-IB Haloacid D 99.8 1.8E-19 3.8E-24 160.5 12.1 169 87-300 2-175 (177)
13 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.7 3.4E-17 7.3E-22 148.4 14.5 181 86-310 6-188 (201)
14 TIGR00338 serB phosphoserine p 99.7 1.5E-15 3.3E-20 140.4 14.7 177 85-309 15-192 (219)
15 PRK11133 serB phosphoserine ph 99.6 2E-15 4.4E-20 149.7 14.1 224 68-349 81-319 (322)
16 COG0560 SerB Phosphoserine pho 99.6 2.1E-15 4.5E-20 141.4 12.4 173 83-300 4-177 (212)
17 PRK13582 thrH phosphoserine ph 99.6 3E-15 6.4E-20 136.9 12.5 159 86-301 3-162 (205)
18 TIGR02137 HSK-PSP phosphoserin 99.6 5.1E-15 1.1E-19 137.7 10.1 125 148-302 39-163 (203)
19 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.5 5.5E-14 1.2E-18 128.2 11.5 123 162-307 65-193 (202)
20 PF12710 HAD: haloacid dehalog 99.4 1.1E-12 2.4E-17 117.8 8.6 98 182-300 92-192 (192)
21 TIGR01545 YfhB_g-proteo haloac 99.3 7.7E-11 1.7E-15 110.2 14.8 115 162-300 71-192 (210)
22 PRK11590 hypothetical protein; 99.2 1.7E-10 3.7E-15 107.3 13.7 106 178-309 94-200 (211)
23 PRK13288 pyrophosphatase PpaX; 99.0 4.1E-09 8.9E-14 97.4 10.5 42 177-219 80-121 (214)
24 TIGR03351 PhnX-like phosphonat 98.9 8.3E-09 1.8E-13 95.5 12.0 42 177-219 85-126 (220)
25 TIGR01449 PGP_bact 2-phosphogl 98.9 9.9E-09 2.2E-13 94.0 11.7 42 177-219 83-124 (213)
26 PRK13222 phosphoglycolate phos 98.9 1.9E-08 4E-13 92.9 13.4 42 177-219 91-132 (226)
27 TIGR01454 AHBA_synth_RP 3-amin 98.9 9.2E-09 2E-13 94.4 10.1 43 176-219 72-114 (205)
28 PRK10826 2-deoxyglucose-6-phos 98.9 1.5E-08 3.3E-13 94.2 11.0 42 177-219 90-131 (222)
29 COG0546 Gph Predicted phosphat 98.9 1.2E-08 2.6E-13 95.5 10.2 41 178-219 88-128 (220)
30 TIGR02009 PGMB-YQAB-SF beta-ph 98.9 1.3E-08 2.8E-13 91.1 10.0 41 176-219 85-125 (185)
31 cd01427 HAD_like Haloacid deha 98.9 3.4E-09 7.3E-14 87.9 5.7 40 177-216 22-61 (139)
32 PRK11587 putative phosphatase; 98.8 2E-08 4.3E-13 93.4 11.0 40 177-216 81-120 (218)
33 PRK13225 phosphoglycolate phos 98.8 2.4E-08 5.3E-13 97.0 10.7 42 177-219 140-181 (273)
34 PRK06698 bifunctional 5'-methy 98.8 2.3E-08 4.9E-13 103.6 11.1 43 176-219 327-369 (459)
35 PLN03243 haloacid dehalogenase 98.8 3.8E-08 8.3E-13 95.0 11.0 43 176-219 106-148 (260)
36 PRK13226 phosphoglycolate phos 98.8 8.5E-08 1.8E-12 90.1 12.2 42 177-219 93-134 (229)
37 PLN02779 haloacid dehalogenase 98.8 4.3E-08 9.4E-13 95.7 10.2 47 170-216 135-181 (286)
38 PRK13223 phosphoglycolate phos 98.7 8.5E-08 1.9E-12 92.8 12.0 39 178-216 100-138 (272)
39 TIGR01428 HAD_type_II 2-haloal 98.7 1.4E-07 3.1E-12 85.9 12.0 42 177-219 90-131 (198)
40 PRK14988 GMP/IMP nucleotidase; 98.7 5.1E-08 1.1E-12 91.7 8.8 42 177-219 91-132 (224)
41 TIGR02252 DREG-2 REG-2-like, H 98.7 1.2E-07 2.7E-12 86.5 10.9 38 178-216 104-141 (203)
42 TIGR01990 bPGM beta-phosphoglu 98.7 4.5E-08 9.7E-13 87.6 7.8 37 178-216 86-122 (185)
43 TIGR01422 phosphonatase phosph 98.7 1.2E-07 2.7E-12 89.9 11.0 40 177-216 97-136 (253)
44 PLN02770 haloacid dehalogenase 98.7 1.4E-07 3.1E-12 89.8 11.3 42 177-219 106-147 (248)
45 PRK13478 phosphonoacetaldehyde 98.7 2.2E-07 4.8E-12 89.1 12.7 40 177-216 99-138 (267)
46 TIGR01548 HAD-SF-IA-hyp1 haloa 98.7 1.1E-07 2.5E-12 86.8 9.9 40 179-219 106-145 (197)
47 TIGR02253 CTE7 HAD superfamily 98.6 2.5E-07 5.3E-12 85.4 11.5 42 177-219 92-133 (221)
48 PRK09449 dUMP phosphatase; Pro 98.6 2.3E-07 5E-12 86.0 10.2 41 177-219 93-133 (224)
49 PF13419 HAD_2: Haloacid dehal 98.6 1.8E-07 4E-12 81.3 8.8 43 176-219 74-116 (176)
50 PLN02575 haloacid dehalogenase 98.6 4.6E-07 9.9E-12 92.1 11.9 42 177-219 214-255 (381)
51 TIGR02254 YjjG/YfnB HAD superf 98.5 3E-07 6.6E-12 84.6 8.3 41 177-219 95-135 (224)
52 TIGR01549 HAD-SF-IA-v1 haloaci 98.5 2.4E-07 5.1E-12 80.9 7.0 40 177-216 62-101 (154)
53 PLN02177 glycerol-3-phosphate 98.5 1.2E-06 2.5E-11 92.1 13.0 122 161-312 87-215 (497)
54 PRK09456 ?-D-glucose-1-phospha 98.5 3.1E-07 6.8E-12 84.2 7.6 51 165-215 70-120 (199)
55 TIGR01672 AphA HAD superfamily 98.5 7.4E-07 1.6E-11 85.2 10.4 41 178-219 113-157 (237)
56 PLN02940 riboflavin kinase 98.5 2E-07 4.3E-12 94.8 6.1 42 177-218 91-132 (382)
57 PRK10563 6-phosphogluconate ph 98.4 1.7E-06 3.7E-11 80.1 11.1 39 177-219 86-124 (221)
58 PRK10725 fructose-1-P/6-phosph 98.4 1.1E-06 2.5E-11 79.0 9.0 40 177-219 86-125 (188)
59 TIGR01509 HAD-SF-IA-v3 haloaci 98.4 3.1E-06 6.8E-11 75.1 10.7 40 178-219 84-123 (183)
60 TIGR01993 Pyr-5-nucltdase pyri 98.4 3.5E-06 7.5E-11 76.0 11.0 53 163-219 64-120 (184)
61 PRK08238 hypothetical protein; 98.2 2.6E-06 5.6E-11 89.2 8.2 96 177-311 70-165 (479)
62 TIGR02247 HAD-1A3-hyp Epoxide 98.2 7.1E-06 1.5E-10 75.5 8.9 32 176-207 91-122 (211)
63 PLN02919 haloacid dehalogenase 98.2 5.6E-06 1.2E-10 94.1 9.2 40 179-219 161-200 (1057)
64 COG0637 Predicted phosphatase/ 98.1 1.4E-05 3.1E-10 75.1 9.0 43 176-219 83-125 (221)
65 PRK10748 flavin mononucleotide 98.0 3.9E-05 8.4E-10 72.6 11.0 51 156-207 81-140 (238)
66 TIGR01493 HAD-SF-IA-v2 Haloaci 98.0 7.4E-06 1.6E-10 72.9 5.1 35 177-219 88-122 (175)
67 PLN02811 hydrolase 98.0 3.6E-05 7.7E-10 71.7 9.6 35 177-211 76-110 (220)
68 PHA02597 30.2 hypothetical pro 97.9 3.8E-05 8.1E-10 70.0 8.6 38 177-215 72-109 (197)
69 PRK11009 aphA acid phosphatase 97.9 4.8E-05 1E-09 72.8 9.6 41 178-219 113-157 (237)
70 TIGR01511 ATPase-IB1_Cu copper 97.9 2.4E-05 5.3E-10 83.4 7.3 108 178-337 404-511 (562)
71 TIGR01512 ATPase-IB2_Cd heavy 97.8 2.8E-05 6.2E-10 82.3 5.6 114 178-341 361-475 (536)
72 PF00702 Hydrolase: haloacid d 97.7 1.6E-05 3.4E-10 72.2 2.6 87 178-300 126-212 (215)
73 TIGR01533 lipo_e_P4 5'-nucleot 97.7 0.0003 6.6E-09 68.5 11.4 48 171-219 110-160 (266)
74 TIGR01691 enolase-ppase 2,3-di 97.6 0.00018 3.8E-09 68.1 8.3 40 177-216 93-132 (220)
75 COG2217 ZntA Cation transport 97.5 0.00013 2.7E-09 79.9 6.3 116 178-344 536-651 (713)
76 TIGR01525 ATPase-IB_hvy heavy 97.5 0.00014 3.1E-09 77.3 6.6 113 178-341 383-496 (556)
77 PLN02499 glycerol-3-phosphate 97.5 0.00055 1.2E-08 71.6 9.8 139 80-243 4-152 (498)
78 TIGR01497 kdpB K+-transporting 97.4 0.00024 5.3E-09 77.3 6.6 112 179-341 446-557 (675)
79 smart00577 CPDc catalytic doma 97.4 0.00047 1E-08 60.8 7.2 39 177-216 43-81 (148)
80 TIGR01522 ATPase-IIA2_Ca golgi 97.4 0.00027 5.8E-09 79.3 6.8 139 179-342 528-668 (884)
81 COG4030 Uncharacterized protei 97.4 0.00032 7E-09 66.6 6.2 71 159-234 64-134 (315)
82 PRK01122 potassium-transportin 97.3 0.00049 1.1E-08 75.1 7.8 112 179-341 445-556 (679)
83 TIGR01647 ATPase-IIIA_H plasma 97.3 0.00067 1.5E-08 74.9 8.2 135 179-342 442-584 (755)
84 PRK10671 copA copper exporting 97.3 0.00042 9.1E-09 77.2 6.6 115 179-344 650-764 (834)
85 KOG2914 Predicted haloacid-hal 97.3 0.0028 6.2E-08 60.2 11.2 40 177-216 90-129 (222)
86 PRK11033 zntA zinc/cadmium/mer 97.3 0.00039 8.5E-09 76.6 6.1 111 178-341 567-677 (741)
87 TIGR01524 ATPase-IIIB_Mg magne 97.3 0.00059 1.3E-08 76.4 7.6 140 178-344 514-654 (867)
88 TIGR02251 HIF-SF_euk Dullard-l 97.2 0.00099 2.2E-08 59.8 7.4 39 177-216 40-78 (162)
89 PRK10517 magnesium-transportin 97.2 0.00082 1.8E-08 75.6 8.3 140 178-344 549-689 (902)
90 PRK14010 potassium-transportin 97.2 0.00064 1.4E-08 74.1 7.2 113 179-342 441-553 (673)
91 PRK15122 magnesium-transportin 97.2 0.00053 1.1E-08 77.2 6.4 137 179-342 550-687 (903)
92 TIGR01684 viral_ppase viral ph 97.2 0.001 2.2E-08 65.6 7.5 52 178-230 144-196 (301)
93 PRK05446 imidazole glycerol-ph 97.1 0.00064 1.4E-08 68.8 5.2 37 178-214 29-69 (354)
94 TIGR01116 ATPase-IIA1_Ca sarco 97.0 0.00057 1.2E-08 77.0 4.7 140 179-340 537-677 (917)
95 TIGR01261 hisB_Nterm histidino 97.0 0.00066 1.4E-08 61.1 4.1 41 178-219 28-83 (161)
96 COG0474 MgtA Cation transport 97.0 0.0007 1.5E-08 76.3 5.0 144 178-344 546-691 (917)
97 TIGR01517 ATPase-IIB_Ca plasma 97.0 0.0023 4.9E-08 72.4 8.7 140 179-342 579-719 (941)
98 TIGR01685 MDP-1 magnesium-depe 97.0 0.00067 1.5E-08 62.0 3.7 40 177-216 43-83 (174)
99 TIGR00213 GmhB_yaeD D,D-heptos 96.9 0.001 2.2E-08 60.0 4.4 29 178-206 25-53 (176)
100 TIGR01662 HAD-SF-IIIA HAD-supe 96.9 0.0014 3E-08 55.9 4.8 40 179-219 25-72 (132)
101 TIGR01656 Histidinol-ppas hist 96.8 0.0014 3E-08 57.4 4.5 28 178-205 26-53 (147)
102 PRK10530 pyridoxal phosphate ( 96.8 0.0024 5.2E-08 60.7 6.3 28 283-312 215-242 (272)
103 smart00775 LNS2 LNS2 domain. T 96.8 0.0046 9.9E-08 55.4 7.5 35 181-215 29-66 (157)
104 TIGR01523 ATPase-IID_K-Na pota 96.7 0.0015 3.2E-08 74.7 4.7 140 179-339 646-793 (1053)
105 KOG0207 Cation transport ATPas 96.6 0.0055 1.2E-07 67.8 7.6 115 178-343 722-836 (951)
106 TIGR01106 ATPase-IIC_X-K sodiu 96.6 0.0038 8.3E-08 71.0 6.7 144 179-340 568-731 (997)
107 TIGR01670 YrbI-phosphatas 3-de 96.6 0.0024 5.1E-08 56.7 3.9 32 187-219 36-67 (154)
108 COG1011 Predicted hydrolase (H 96.5 0.014 3.1E-07 53.6 9.3 41 177-219 97-137 (229)
109 TIGR01482 SPP-subfamily Sucros 96.4 0.004 8.6E-08 57.5 4.8 33 283-317 165-197 (225)
110 PRK08942 D,D-heptose 1,7-bisph 96.4 0.0035 7.7E-08 56.6 4.3 28 178-205 28-55 (181)
111 TIGR01494 ATPase_P-type ATPase 96.4 0.0054 1.2E-07 64.3 6.2 105 179-342 347-451 (499)
112 PRK06769 hypothetical protein; 96.4 0.0031 6.8E-08 57.0 3.8 29 178-206 27-55 (173)
113 TIGR02726 phenyl_P_delta pheny 96.3 0.004 8.7E-08 56.6 4.0 117 188-353 43-159 (169)
114 TIGR01664 DNA-3'-Pase DNA 3'-p 96.2 0.0038 8.2E-08 56.4 3.3 39 180-219 43-93 (166)
115 TIGR01668 YqeG_hyp_ppase HAD s 96.2 0.0072 1.6E-07 54.5 5.0 39 178-216 42-81 (170)
116 PRK12702 mannosyl-3-phosphogly 96.1 0.012 2.6E-07 58.2 6.4 102 190-308 144-251 (302)
117 PRK09484 3-deoxy-D-manno-octul 95.9 0.0072 1.6E-07 55.1 3.4 118 187-353 56-173 (183)
118 PLN02382 probable sucrose-phos 95.5 0.14 3.1E-06 52.8 11.7 61 283-345 194-256 (413)
119 KOG0202 Ca2+ transporting ATPa 95.4 0.025 5.4E-07 62.4 5.7 136 178-337 583-723 (972)
120 PF06941 NT5C: 5' nucleotidase 95.3 0.078 1.7E-06 48.4 8.1 42 177-218 71-119 (191)
121 TIGR02250 FCP1_euk FCP1-like p 95.0 0.052 1.1E-06 48.7 5.9 52 177-233 56-107 (156)
122 KOG0204 Calcium transporting A 94.8 0.11 2.5E-06 57.5 8.8 141 178-343 646-790 (1034)
123 PHA03398 viral phosphatase sup 94.6 0.073 1.6E-06 52.8 6.1 56 177-233 145-201 (303)
124 TIGR01657 P-ATPase-V P-type AT 94.4 0.026 5.6E-07 64.8 2.8 40 179-219 656-695 (1054)
125 PRK14502 bifunctional mannosyl 94.2 0.094 2E-06 57.3 6.6 42 57-98 387-430 (694)
126 PTZ00445 p36-lilke protein; Pr 94.1 0.15 3.3E-06 48.3 6.8 38 179-216 75-127 (219)
127 COG4087 Soluble P-type ATPase 94.0 0.054 1.2E-06 47.7 3.3 93 177-312 28-121 (152)
128 TIGR01487 SPP-like sucrose-pho 93.9 0.21 4.5E-06 46.1 7.3 28 284-313 164-191 (215)
129 TIGR01675 plant-AP plant acid 93.6 0.82 1.8E-05 43.8 11.0 49 169-218 110-161 (229)
130 TIGR01681 HAD-SF-IIIC HAD-supe 93.5 0.088 1.9E-06 45.2 3.8 38 179-216 29-67 (128)
131 PF03767 Acid_phosphat_B: HAD 93.3 0.24 5.1E-06 47.2 6.7 46 172-218 108-156 (229)
132 TIGR01652 ATPase-Plipid phosph 92.4 0.18 3.9E-06 58.0 5.5 40 179-219 631-670 (1057)
133 TIGR01485 SPP_plant-cyano sucr 92.4 0.23 5E-06 47.1 5.4 33 283-317 183-216 (249)
134 PF08282 Hydrolase_3: haloacid 92.2 0.48 1E-05 43.3 7.1 33 283-317 202-234 (254)
135 PF03031 NIF: NLI interacting 91.9 0.13 2.9E-06 45.2 2.9 39 177-216 34-72 (159)
136 COG0561 Cof Predicted hydrolas 91.5 1.1 2.4E-05 42.5 9.1 33 186-219 27-59 (264)
137 PLN02151 trehalose-phosphatase 91.3 0.68 1.5E-05 47.1 7.6 33 65-98 79-112 (354)
138 PLN03190 aminophospholipid tra 91.2 0.1 2.2E-06 60.6 1.8 38 179-216 726-763 (1178)
139 TIGR02244 HAD-IG-Ncltidse HAD 91.2 0.73 1.6E-05 46.7 7.7 41 178-218 183-223 (343)
140 PF08235 LNS2: LNS2 (Lipin/Ned 91.2 0.3 6.4E-06 44.2 4.4 38 179-216 27-67 (157)
141 PF13344 Hydrolase_6: Haloacid 90.3 0.45 9.7E-06 39.4 4.4 41 178-219 13-56 (101)
142 TIGR01663 PNK-3'Pase polynucle 90.3 0.37 8.1E-06 51.4 4.9 39 180-219 198-248 (526)
143 PF11019 DUF2608: Protein of u 89.9 4.1 8.9E-05 39.4 11.4 105 75-216 11-118 (252)
144 TIGR01459 HAD-SF-IIA-hyp4 HAD- 89.9 0.52 1.1E-05 44.5 5.1 42 177-219 22-65 (242)
145 PLN02580 trehalose-phosphatase 89.8 1.1 2.3E-05 46.2 7.5 26 73-98 107-133 (384)
146 PRK10187 trehalose-6-phosphate 89.8 0.7 1.5E-05 44.7 6.0 29 283-311 190-220 (266)
147 TIGR02245 HAD_IIID1 HAD-superf 89.7 0.51 1.1E-05 44.1 4.7 38 178-216 44-81 (195)
148 PLN03017 trehalose-phosphatase 89.2 1.4 3.1E-05 45.0 7.9 33 65-98 92-125 (366)
149 PRK03669 mannosyl-3-phosphogly 89.2 1.7 3.7E-05 41.7 8.1 30 187-216 32-61 (271)
150 COG0241 HisB Histidinol phosph 89.1 0.77 1.7E-05 42.4 5.4 26 178-203 30-55 (181)
151 KOG3109 Haloacid dehalogenase- 87.4 10 0.00022 36.5 11.6 55 162-219 79-137 (244)
152 KOG3085 Predicted hydrolase (H 87.2 5.6 0.00012 38.3 10.1 39 177-216 111-149 (237)
153 KOG3128 Uncharacterized conser 86.3 1.8 3.9E-05 42.2 6.1 78 221-301 212-291 (298)
154 PF08282 Hydrolase_3: haloacid 80.8 0.8 1.7E-05 41.8 1.3 103 87-204 1-104 (254)
155 PRK01158 phosphoglycolate phos 80.8 0.76 1.7E-05 42.4 1.2 34 283-318 173-206 (230)
156 PLN02423 phosphomannomutase 79.4 4.5 9.8E-05 38.6 6.0 18 80-97 3-20 (245)
157 PRK10513 sugar phosphate phosp 79.2 0.95 2.1E-05 43.0 1.3 34 283-318 212-245 (270)
158 KOG0203 Na+/K+ ATPase, alpha s 78.9 2.9 6.4E-05 46.8 5.0 49 283-339 705-753 (1019)
159 PHA02530 pseT polynucleotide k 78.2 3.2 6.9E-05 40.1 4.7 40 177-216 185-224 (300)
160 TIGR00685 T6PP trehalose-phosp 78.0 2 4.3E-05 40.8 3.1 18 283-300 183-200 (244)
161 KOG0206 P-type ATPase [General 77.8 2.7 5.8E-05 48.8 4.6 35 178-212 650-684 (1151)
162 PLN02205 alpha,alpha-trehalose 77.0 7.8 0.00017 43.9 7.9 31 184-214 621-652 (854)
163 COG4229 Predicted enolase-phos 76.8 18 0.0004 33.9 8.8 30 178-207 102-131 (229)
164 TIGR01686 FkbH FkbH-like domai 76.8 3.2 6.9E-05 41.2 4.3 37 180-216 32-68 (320)
165 PF12689 Acid_PPase: Acid Phos 76.7 4.3 9.4E-05 37.0 4.8 40 177-216 43-83 (169)
166 TIGR02463 MPGP_rel mannosyl-3- 76.4 1.1 2.5E-05 41.2 0.9 18 283-300 195-212 (221)
167 KOG2116 Protein involved in pl 76.3 3.3 7.1E-05 45.2 4.4 13 86-98 532-544 (738)
168 PRK10976 putative hydrolase; P 76.3 1.2 2.5E-05 42.3 1.0 34 283-318 206-239 (266)
169 COG2503 Predicted secreted aci 74.6 4 8.7E-05 39.6 4.1 47 162-208 105-151 (274)
170 PLN02887 hydrolase family prot 74.4 17 0.00037 39.5 9.3 38 179-216 325-362 (580)
171 TIGR02471 sucr_syn_bact_C sucr 73.2 2.1 4.5E-05 40.1 1.8 33 283-317 175-207 (236)
172 COG5663 Uncharacterized conser 73.2 6.5 0.00014 36.3 4.9 38 178-216 71-111 (194)
173 TIGR01487 SPP-like sucrose-pho 73.1 1.5 3.2E-05 40.4 0.8 12 86-97 3-14 (215)
174 PRK03669 mannosyl-3-phosphogly 73.1 1.5 3.4E-05 42.0 1.0 30 283-314 206-235 (271)
175 PRK14501 putative bifunctional 72.7 8.2 0.00018 42.7 6.6 29 283-311 671-700 (726)
176 TIGR01456 CECR5 HAD-superfamil 72.2 13 0.00027 37.0 7.2 13 85-97 1-13 (321)
177 TIGR01689 EcbF-BcbF capsule bi 71.3 5.4 0.00012 34.6 3.9 12 86-97 3-14 (126)
178 PLN02645 phosphoglycolate phos 71.2 8.5 0.00018 38.0 5.7 49 180-229 45-96 (311)
179 PRK10444 UMP phosphatase; Prov 70.9 5.4 0.00012 38.3 4.2 35 179-213 17-51 (248)
180 COG2216 KdpB High-affinity K+ 70.8 5.8 0.00013 42.4 4.5 40 179-219 447-486 (681)
181 TIGR01486 HAD-SF-IIB-MPGP mann 70.3 2.1 4.5E-05 40.6 1.2 29 283-313 194-222 (256)
182 TIGR02461 osmo_MPG_phos mannos 70.1 1.8 3.9E-05 40.8 0.7 18 283-300 199-216 (225)
183 KOG0210 P-type ATPase [Inorgan 70.1 6.2 0.00013 43.6 4.7 59 136-206 623-685 (1051)
184 COG0647 NagD Predicted sugar p 70.0 8.4 0.00018 37.8 5.3 42 177-218 22-66 (269)
185 TIGR01485 SPP_plant-cyano sucr 68.7 3.3 7.2E-05 39.1 2.2 31 84-114 1-32 (249)
186 PRK15126 thiamin pyrimidine py 68.6 1.8 3.9E-05 41.3 0.3 33 283-317 204-236 (272)
187 COG1877 OtsB Trehalose-6-phosp 68.3 4.5 9.7E-05 39.6 3.0 30 284-313 199-230 (266)
188 TIGR01458 HAD-SF-IIA-hyp3 HAD- 68.0 6.4 0.00014 37.8 4.0 39 180-219 22-63 (257)
189 TIGR01452 PGP_euk phosphoglyco 66.2 13 0.00028 36.0 5.7 47 180-228 19-69 (279)
190 PRK00927 tryptophanyl-tRNA syn 65.8 17 0.00036 36.6 6.6 132 48-193 189-326 (333)
191 PRK00192 mannosyl-3-phosphogly 65.7 3 6.5E-05 40.1 1.2 32 284-317 208-239 (273)
192 TIGR02461 osmo_MPG_phos mannos 65.5 14 0.0003 34.8 5.6 36 183-219 19-54 (225)
193 TIGR02463 MPGP_rel mannosyl-3- 65.1 16 0.00035 33.5 6.0 35 184-219 21-55 (221)
194 TIGR01457 HAD-SF-IIA-hyp2 HAD- 65.0 15 0.00032 35.0 5.8 38 181-219 19-59 (249)
195 KOG2826 Actin-related protein 65.0 7.2 0.00016 37.6 3.5 38 67-104 12-52 (301)
196 PF13242 Hydrolase_like: HAD-h 64.5 2.3 5.1E-05 32.7 0.2 25 283-307 21-46 (75)
197 TIGR01680 Veg_Stor_Prot vegeta 63.8 11 0.00025 37.0 4.8 46 171-216 137-185 (275)
198 PRK00192 mannosyl-3-phosphogly 62.0 19 0.0004 34.6 5.9 47 181-230 23-69 (273)
199 TIGR00099 Cof-subfamily Cof su 61.7 19 0.00041 33.9 5.9 56 180-238 17-73 (256)
200 COG0561 Cof Predicted hydrolas 61.6 4.7 0.0001 38.2 1.7 29 283-313 205-233 (264)
201 PRK09484 3-deoxy-D-manno-octul 61.4 4.1 8.8E-05 37.0 1.2 14 84-97 21-34 (183)
202 TIGR00099 Cof-subfamily Cof su 60.7 3.7 8.1E-05 38.7 0.8 27 283-311 204-230 (256)
203 PLN02887 hydrolase family prot 60.2 4.2 9.1E-05 44.1 1.2 34 283-318 523-556 (580)
204 PF05116 S6PP: Sucrose-6F-phos 59.5 5.6 0.00012 38.0 1.8 20 283-302 181-200 (247)
205 PF02358 Trehalose_PPase: Treh 57.9 5.9 0.00013 37.2 1.7 19 284-302 185-203 (235)
206 PF08645 PNK3P: Polynucleotide 57.9 3.5 7.6E-05 36.9 0.1 13 283-295 118-130 (159)
207 PF12689 Acid_PPase: Acid Phos 57.2 38 0.00083 30.9 6.8 120 86-215 5-165 (169)
208 COG3769 Predicted hydrolase (H 56.4 4.5 9.8E-05 38.9 0.6 41 274-316 200-240 (274)
209 PF09419 PGP_phosphatase: Mito 56.3 10 0.00022 34.7 2.8 37 59-97 18-54 (168)
210 COG0180 TrpS Tryptophanyl-tRNA 56.2 63 0.0014 32.5 8.6 100 17-133 160-268 (314)
211 PF09419 PGP_phosphatase: Mito 55.0 23 0.0005 32.4 4.9 28 178-205 58-87 (168)
212 PF00702 Hydrolase: haloacid d 54.1 7.4 0.00016 34.8 1.6 12 86-97 3-14 (215)
213 PLN02588 glycerol-3-phosphate 53.9 85 0.0019 33.7 9.5 78 159-243 109-188 (525)
214 PRK10513 sugar phosphate phosp 53.9 32 0.0007 32.5 6.0 38 181-219 22-59 (270)
215 PF00875 DNA_photolyase: DNA p 52.5 29 0.00062 30.6 5.1 44 183-231 54-97 (165)
216 TIGR01681 HAD-SF-IIIC HAD-supe 52.4 20 0.00044 30.5 4.0 16 283-298 108-123 (128)
217 PRK12702 mannosyl-3-phosphogly 52.1 33 0.00071 34.3 5.8 33 186-219 25-57 (302)
218 COG1778 Low specificity phosph 51.1 5.2 0.00011 36.4 0.1 38 179-219 37-74 (170)
219 TIGR01689 EcbF-BcbF capsule bi 50.9 32 0.00069 29.9 4.9 49 179-230 24-87 (126)
220 TIGR01484 HAD-SF-IIB HAD-super 50.8 4.2 9.2E-05 36.8 -0.5 18 283-300 179-196 (204)
221 KOG2470 Similar to IMP-GMP spe 50.5 12 0.00027 38.2 2.6 53 181-233 242-298 (510)
222 PRK05667 dnaG DNA primase; Val 49.5 2.7E+02 0.0059 30.3 12.8 76 155-247 133-218 (580)
223 PRK01158 phosphoglycolate phos 49.3 42 0.00091 30.7 5.9 39 180-219 21-59 (230)
224 PRK12556 tryptophanyl-tRNA syn 48.9 1.1E+02 0.0023 30.9 9.1 40 38-82 192-232 (332)
225 COG2179 Predicted hydrolase of 48.6 32 0.00069 31.7 4.7 42 177-219 44-85 (175)
226 TIGR01482 SPP-subfamily Sucros 48.4 43 0.00093 30.5 5.8 38 180-218 16-53 (225)
227 COG3700 AphA Acid phosphatase 48.4 28 0.00061 32.6 4.4 18 80-97 59-76 (237)
228 PF05116 S6PP: Sucrose-6F-phos 47.2 7.6 0.00016 37.1 0.5 13 84-96 2-14 (247)
229 PRK10530 pyridoxal phosphate ( 46.7 45 0.00098 31.3 5.8 47 181-230 22-68 (272)
230 TIGR01484 HAD-SF-IIB HAD-super 46.7 31 0.00067 31.1 4.5 36 180-215 18-53 (204)
231 PRK10187 trehalose-6-phosphate 46.6 8.7 0.00019 37.1 0.9 15 84-98 14-28 (266)
232 PRK10976 putative hydrolase; P 46.0 65 0.0014 30.4 6.8 38 181-219 21-58 (266)
233 PRK02301 putative deoxyhypusin 45.6 1.3E+02 0.0028 30.3 9.0 115 67-200 70-190 (316)
234 TIGR01486 HAD-SF-IIB-MPGP mann 45.4 51 0.0011 31.1 5.9 45 184-231 21-65 (256)
235 TIGR00321 dhys deoxyhypusine s 43.8 2.2E+02 0.0047 28.5 10.2 116 67-200 58-179 (301)
236 PRK12282 tryptophanyl-tRNA syn 43.6 1E+02 0.0022 31.2 7.9 128 51-193 195-325 (333)
237 TIGR01460 HAD-SF-IIA Haloacid 42.4 55 0.0012 30.8 5.6 41 179-219 14-57 (236)
238 PLN03063 alpha,alpha-trehalose 41.6 22 0.00047 40.1 3.1 27 70-98 495-521 (797)
239 PRK00805 putative deoxyhypusin 41.3 1.6E+02 0.0035 29.8 8.9 116 67-200 59-181 (329)
240 PRK15126 thiamin pyrimidine py 41.1 57 0.0012 31.0 5.5 39 180-219 20-58 (272)
241 PLN03064 alpha,alpha-trehalose 40.9 25 0.00053 40.4 3.4 29 69-99 578-606 (934)
242 TIGR02765 crypto_DASH cryptoch 40.8 50 0.0011 34.0 5.5 43 183-230 62-104 (429)
243 COG5083 SMP2 Uncharacterized p 40.3 18 0.00039 38.1 2.0 14 85-98 376-389 (580)
244 PRK01221 putative deoxyhypusin 39.5 2E+02 0.0043 29.0 9.2 116 67-200 67-189 (312)
245 TIGR00233 trpS tryptophanyl-tR 39.5 1.2E+02 0.0027 30.4 7.8 32 51-82 191-223 (328)
246 COG0068 HypF Hydrogenase matur 39.4 1.5E+02 0.0033 33.1 8.9 111 118-239 619-737 (750)
247 PF05761 5_nucleotid: 5' nucle 39.3 53 0.0011 34.6 5.3 42 178-219 182-223 (448)
248 TIGR01656 Histidinol-ppas hist 38.8 17 0.00037 31.5 1.4 20 283-302 118-137 (147)
249 KOG0323 TFIIF-interacting CTD 37.8 49 0.0011 36.4 5.0 57 177-238 199-256 (635)
250 TIGR02726 phenyl_P_delta pheny 37.3 17 0.00037 32.9 1.2 12 86-97 9-20 (169)
251 PRK14024 phosphoribosyl isomer 37.0 2.9E+02 0.0062 26.2 9.6 66 62-150 29-95 (241)
252 TIGR01670 YrbI-phosphatas 3-de 37.0 17 0.00038 31.9 1.2 18 283-300 92-109 (154)
253 cd00806 TrpRS_core catalytic c 36.5 65 0.0014 31.5 5.2 35 49-83 188-223 (280)
254 TIGR01662 HAD-SF-IIIA HAD-supe 36.5 19 0.00042 30.1 1.4 20 283-302 103-123 (132)
255 PRK13762 tRNA-modifying enzyme 35.8 93 0.002 31.1 6.3 44 163-206 118-169 (322)
256 cd03769 SR_IS607_transposase_l 35.7 91 0.002 26.9 5.5 37 180-216 47-89 (134)
257 PF14213 DUF4325: Domain of un 35.5 49 0.0011 25.6 3.4 28 66-96 2-29 (74)
258 PHA02540 61 DNA primase; Provi 35.5 4.9E+02 0.011 26.5 12.0 20 229-248 172-194 (337)
259 PRK05428 HPr kinase/phosphoryl 35.1 67 0.0014 32.2 5.1 66 185-258 96-165 (308)
260 TIGR00685 T6PP trehalose-phosp 34.8 16 0.00035 34.5 0.6 16 83-98 2-17 (244)
261 TIGR02826 RNR_activ_nrdG3 anae 34.7 1.2E+02 0.0027 26.7 6.3 35 180-214 73-108 (147)
262 PRK03971 putative deoxyhypusin 33.6 2E+02 0.0044 29.2 8.3 116 67-200 79-209 (334)
263 PLN02486 aminoacyl-tRNA ligase 33.2 1.7E+02 0.0037 30.2 7.8 84 38-134 253-340 (383)
264 PTZ00174 phosphomannomutase; P 33.1 26 0.00055 33.2 1.7 18 283-300 200-221 (247)
265 PRK12285 tryptophanyl-tRNA syn 33.1 87 0.0019 32.1 5.7 74 51-134 250-326 (368)
266 TIGR02109 PQQ_syn_pqqE coenzym 33.1 1.2E+02 0.0026 30.2 6.7 37 176-212 62-101 (358)
267 COG0620 MetE Methionine syntha 32.7 2E+02 0.0042 29.1 8.0 70 152-229 19-93 (330)
268 COG3684 LacD Tagatose-1,6-bisp 31.5 81 0.0017 31.2 4.8 144 43-206 85-241 (306)
269 KOG2145 Cytoplasmic tryptophan 30.4 3.3E+02 0.0071 27.5 8.8 79 46-134 272-353 (397)
270 cd00128 XPG Xeroderma pigmento 30.0 5.4E+02 0.012 25.3 11.2 45 181-230 127-171 (316)
271 PF08275 Toprim_N: DNA primase 29.7 24 0.00052 30.5 0.8 76 155-247 14-98 (128)
272 TIGR00591 phr2 photolyase PhrI 29.6 92 0.002 32.4 5.3 40 186-230 82-121 (454)
273 PRK08942 D,D-heptose 1,7-bisph 29.4 34 0.00074 30.5 1.8 20 283-302 120-139 (181)
274 PLN02423 phosphomannomutase 29.2 31 0.00067 32.8 1.6 19 282-300 199-221 (245)
275 TIGR00213 GmhB_yaeD D,D-heptos 29.2 29 0.00064 30.9 1.4 24 283-306 123-146 (176)
276 PF06277 EutA: Ethanolamine ut 29.1 85 0.0018 33.4 4.9 76 132-216 53-130 (473)
277 PRK12283 tryptophanyl-tRNA syn 29.1 2.4E+02 0.0051 29.4 8.0 136 38-193 254-392 (398)
278 TIGR01391 dnaG DNA primase, ca 28.2 2.2E+02 0.0047 29.5 7.7 76 155-247 137-222 (415)
279 PTZ00174 phosphomannomutase; P 27.4 89 0.0019 29.5 4.4 35 180-214 23-57 (247)
280 PRK06015 keto-hydroxyglutarate 27.1 3.9E+02 0.0085 25.0 8.5 100 60-209 8-111 (201)
281 TIGR03556 photolyase_8HDF deox 27.0 1.1E+02 0.0024 32.1 5.4 31 186-216 59-89 (471)
282 cd06533 Glyco_transf_WecG_TagA 26.9 1.2E+02 0.0027 27.2 5.0 44 184-229 35-78 (171)
283 COG4996 Predicted phosphatase 26.4 98 0.0021 27.7 4.0 42 177-219 39-80 (164)
284 PRK14114 1-(5-phosphoribosyl)- 26.1 2.1E+02 0.0045 27.4 6.7 67 60-148 25-91 (241)
285 PRK05446 imidazole glycerol-ph 25.8 50 0.0011 33.7 2.4 47 84-132 2-48 (354)
286 PLN02886 aminoacyl-tRNA ligase 25.8 2.2E+02 0.0048 29.5 7.1 34 50-83 249-285 (389)
287 KOG1605 TFIIF-interacting CTD 25.6 30 0.00064 33.9 0.7 50 178-232 130-179 (262)
288 PRK10444 UMP phosphatase; Prov 25.4 31 0.00068 33.0 0.9 26 282-307 190-216 (248)
289 PRK10076 pyruvate formate lyas 25.4 1.8E+02 0.0039 27.3 6.0 34 180-213 51-87 (213)
290 TIGR01456 CECR5 HAD-superfamil 24.5 75 0.0016 31.5 3.4 42 178-220 15-64 (321)
291 COG2390 DeoR Transcriptional r 23.7 3E+02 0.0065 27.7 7.5 64 160-229 23-88 (321)
292 PF08645 PNK3P: Polynucleotide 23.6 70 0.0015 28.5 2.7 23 180-202 30-52 (159)
293 PF08671 SinI: Anti-repressor 23.4 1.3E+02 0.0029 19.7 3.3 25 150-175 4-28 (30)
294 PRK14501 putative bifunctional 22.3 53 0.0011 36.4 2.0 36 180-215 515-551 (726)
295 PRK12284 tryptophanyl-tRNA syn 22.2 3.5E+02 0.0075 28.5 7.8 151 17-194 163-328 (431)
296 PF10776 DUF2600: Protein of u 22.1 2.8E+02 0.0061 28.2 6.9 98 64-171 77-186 (330)
297 PF12000 Glyco_trans_4_3: Gkyc 21.8 2.2E+02 0.0049 26.0 5.7 55 183-243 52-109 (171)
298 COG1899 DYS1 Deoxyhypusine syn 21.8 8.4E+02 0.018 24.7 10.1 134 47-200 44-189 (318)
299 TIGR03365 Bsubt_queE 7-cyano-7 21.8 83 0.0018 29.9 3.0 29 178-206 83-111 (238)
300 PF00578 AhpC-TSA: AhpC/TSA fa 21.7 2.3E+02 0.005 22.7 5.4 33 184-216 48-80 (124)
301 KOG2018 Predicted dinucleotide 21.7 1.8E+02 0.0039 29.7 5.3 126 51-201 67-196 (430)
302 PF02061 Lambda_CIII: Lambda P 21.6 81 0.0017 22.4 2.0 28 166-197 18-45 (45)
303 TIGR01457 HAD-SF-IIA-hyp2 HAD- 21.4 43 0.00093 31.8 1.0 26 282-307 194-220 (249)
304 PLN02645 phosphoglycolate phos 21.0 38 0.00082 33.4 0.5 26 282-307 246-272 (311)
305 TIGR01452 PGP_euk phosphoglyco 20.8 34 0.00074 33.0 0.1 25 283-307 219-244 (279)
306 PF07499 RuvA_C: RuvA, C-termi 20.5 2.2E+02 0.0047 20.1 4.3 26 150-175 1-26 (47)
307 PRK05301 pyrroloquinoline quin 20.1 1.9E+02 0.004 29.2 5.3 30 176-205 71-100 (378)
No 1
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=100.00 E-value=8.1e-74 Score=552.30 Aligned_cols=272 Identities=38% Similarity=0.635 Sum_probs=252.9
Q ss_pred EECChhHHHHHHHHHHhcCCCceEEEEeCCcccccccc-CCCccccHHHHHhccC---hhHHHHHHHHHHhhCCCCCCCC
Q 016842 63 IKGDPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFI-NGSRGQSSHGLLQQGN---PEYDAKRQALYEYYHPLEFSPT 138 (381)
Q Consensus 63 ~i~d~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~-~g~~~dts~~il~~~~---~e~~~~~~~L~~~Y~piE~d~~ 138 (381)
+|+||++|++||++|+++|++|||||+|||+|||+|++ ||+|++|||++++++. +++.+++++|+++|||||+||+
T Consensus 1 ~i~d~~~~~~~~~~~~~~g~~~lqvisDFD~Tlt~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~Y~PiE~d~~ 80 (277)
T TIGR01544 1 RMADPTRVEEIICGLVKGGAAKLQIISDFDYTLSRFSYEDGKRCPTCHGIFDNCKLLTDECRKKLLQLKEKYYPIEVDPV 80 (277)
T ss_pred CCCCHHHHHHHHHHHHhcChhheEEeeccCccceeeecCCCCCCcchHhHHhhCCCCCHHHHHHHHHHHhhccceecCCC
Confidence 58999999999999999999999999999999999986 9999999999999986 7999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcC
Q 016842 139 VPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVH 218 (381)
Q Consensus 139 is~eEk~~~M~Ew~~~~~~Ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g 218 (381)
||.+||+++|+|||+++|+||++.+++++++.+++++++++++||+.+|+++|+++|+|++|+|||++.+|+.+|++. +
T Consensus 81 ~~~~eK~~~m~eWw~k~~~l~~~~~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l-g 159 (277)
T TIGR01544 81 LTVEEKYPYMVEWWTKSHGLLVQQAFPKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA-G 159 (277)
T ss_pred CChHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc-C
Confidence 999999999999999999999999999999999998888999999999999999999999999999999999999987 6
Q ss_pred CCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCccc
Q 016842 219 KSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGM 298 (381)
Q Consensus 219 ~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~m 298 (381)
...++++||||+|.|+++|.++||++|++|+++|++.++... ...+.++..+.++|++|||.||++|
T Consensus 160 l~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~~~-------------~~~~~~~~~~~~vI~vGDs~~Dl~m 226 (277)
T TIGR01544 160 VYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVALRN-------------TEYFNQLKDRSNIILLGDSQGDLRM 226 (277)
T ss_pred CCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHHHH-------------HHHhCccCCcceEEEECcChhhhhH
Confidence 656789999999999999999999999999999997654211 0112223457899999999999999
Q ss_pred ccCC-CccceeeeccCchHHHhhHhhhhhccCEEEecCCchHHHHHhcCcc
Q 016842 299 SDGL-KYETRISVGFLNDNIENNLDNYRNAFDIVYLPTMLALLVYRRLSPP 348 (381)
Q Consensus 299 a~gl-~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t~~~~~~~l~~~ 348 (381)
++|+ ..+++++|||||+++|++++.|++.||||+++|+||+||+.||+.|
T Consensus 227 a~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~t~~v~~~il~~i 277 (277)
T TIGR01544 227 ADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDETLEVANSILQKI 277 (277)
T ss_pred hcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCCCchHHHHHHhhC
Confidence 9999 5789999999999999999999999999999999999999999875
No 2
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-71 Score=520.08 Aligned_cols=287 Identities=41% Similarity=0.647 Sum_probs=268.9
Q ss_pred hhhhccCCCceEECChhHHHHHHHHHHhcCCCceEEEEeCCcccccccc-CCCccccHHHHHh-ccC---hhHHHHHHHH
Q 016842 52 KMENQDLSKFTIKGDPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFI-NGSRGQSSHGLLQ-QGN---PEYDAKRQAL 126 (381)
Q Consensus 52 ~~~~~~~~~~v~i~d~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~-~g~~~dts~~il~-~~~---~e~~~~~~~L 126 (381)
.|-.+-..++|+|+||.+|++||++|+.+|+.++|||+|||+|||+|.+ .|+||+|||+||. ++. |+|++++.+|
T Consensus 6 ~~~~~l~~~~v~vkdp~~v~~~l~~~v~gga~~~~vIsdfd~TLSrfa~~~G~r~pS~~~Vfd~~~~~~~~e~~~k~~~L 85 (298)
T KOG3128|consen 6 LMNPLLGEEQVRVKDPTAVEAKLRKMVVGGAGKLQVISDFDYTLSRFATEQGKRCPSCFGVFDDNVKRLKPECRAKFVAL 85 (298)
T ss_pred ccchhhCCcceeecChHHHHHHHHHHhcCCccceeEeecCchhHHHHHHhhcCcCCccccchhhhhhcCCHHHHHHHHHH
Confidence 3555667899999999999999999999999999999999999999988 5999999999999 443 8999999999
Q ss_pred HHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChH
Q 016842 127 YEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (381)
Q Consensus 127 ~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~ 206 (381)
+++|||||+||.+|++||+|+|+|||+++|+|++++|+++++|.++++++++.||+|..+|++.|++++||+.|||||++
T Consensus 86 yhkY~PIEidP~ltieEKvp~MeeWW~kSH~Lliq~~f~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~IP~~iFSAGig 165 (298)
T KOG3128|consen 86 YHKYYPIEIDPVLTIEEKVPHMEEWWTKSHELLIQGGFSKNAIDDIVAESNIALREGYEEFFEALQAHEIPLLIFSAGIG 165 (298)
T ss_pred HhhccCcccCCCCChhhhchHHHHHHhcccceeecCCcCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEEecchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccccccccccccCCCCCCCCcccccCCCCceE
Q 016842 207 DIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNV 286 (381)
Q Consensus 207 ~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nV 286 (381)
++||+++++..+. +||++++||+|.|+++|.+.||++|+||++||+.+++.. .-..|..+..|.+|
T Consensus 166 diiEev~~q~~~~-~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~~-------------~s~yf~~~~~~~nV 231 (298)
T KOG3128|consen 166 DIIEEVTRQKLVL-HPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQN-------------ESEYFHQLAGRVNV 231 (298)
T ss_pred HHHHHHHHHHhcc-CccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHHHh-------------hhHHHhhccCCceE
Confidence 9999999999664 789999999999999999999999999999999887743 22335667789999
Q ss_pred EEEcCCCCCcccccCC-CccceeeeccCchHHHhhHhhhhhccCEEEecCCchHHHHHhcCcccccc
Q 016842 287 LLLGDHIGDLGMSDGL-KYETRISVGFLNDNIENNLDNYRNAFDIVYLPTMLALLVYRRLSPPQLQI 352 (381)
Q Consensus 287 I~IGDg~~Dl~ma~gl-~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t~~~~~~~l~~~~~~~ 352 (381)
|++|||++|+.|+.|+ ....++++||||+.+|+++++|++.||||+++|+|++|++.+++.|+.|+
T Consensus 232 illGdsigdl~ma~gv~~~~~iLkig~l~d~vee~~~~ymd~ydIvL~~D~tldv~~s~l~~i~~~~ 298 (298)
T KOG3128|consen 232 ILLGDSIGDLHMADGVPRVGHILKIGYLNDSVEEALEKYMDSYDIVLVHDETLDVANSILQIIESQH 298 (298)
T ss_pred EEeccccccchhhcCCcccccceeeecccchHHHHHHHHHhhcceEEecCcccchhHHHHHHHHccC
Confidence 9999999999999999 47889999999999999999999999999999999999999999998763
No 3
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=100.00 E-value=1e-69 Score=513.58 Aligned_cols=242 Identities=50% Similarity=0.772 Sum_probs=200.0
Q ss_pred ccccccccCCCccccHHHHHhccC---hhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 016842 93 GTLTRYFINGSRGQSSHGLLQQGN---PEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAI 169 (381)
Q Consensus 93 gTIT~~~~~g~~~dts~~il~~~~---~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~glt~~~i 169 (381)
+|||+|++||+|++|||++++++. +++.++.++|+++|||||+||+||.+||+|+|+|||+++|+|+++++++++++
T Consensus 1 ~TLT~f~~nG~r~~sshgil~~~~~~~~~~~~k~~~L~~kY~PIE~dp~~s~eEK~p~M~EWw~kah~llv~~~l~k~~i 80 (246)
T PF05822_consen 1 YTLTRFHYNGKRCPSSHGILENSKLLPEEYRKKLKELFEKYYPIEIDPTMSIEEKIPHMEEWWTKAHELLVEQGLTKSEI 80 (246)
T ss_dssp TTSB-SEETTEE---HHHHHHTSTTS-HHHHHHHHHHHHHHHHHHT-SSS-HHHHHHHHHHHHHHHHHHHHHHT-BGGGH
T ss_pred CeeeeeccCCeECCChHHHHhcCCcCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCcCHHHH
Confidence 599999999999999999999985 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCcccc
Q 016842 170 KKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHS 249 (381)
Q Consensus 170 ~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~ 249 (381)
.++++++++.||+|+.+|++.|++++||++|||||++++|+++|++. +..++|++|+||+|.||++|+++||++|+||+
T Consensus 81 ~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~-~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~ 159 (246)
T PF05822_consen 81 EEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA-GVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHT 159 (246)
T ss_dssp HHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT-T--BTTEEEEEE-EEE-TTSBEEEE-SS---T
T ss_pred HHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc-CCCCCCeEEEeeeEEECCcceEeecCCCceEE
Confidence 99999999999999999999999999999999999999999999999 77789999999999999999999999999999
Q ss_pred CCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCC-CccceeeeccCchHHHhhHhhhhhcc
Q 016842 250 LNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGL-KYETRISVGFLNDNIENNLDNYRNAF 328 (381)
Q Consensus 250 ~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl-~~d~v~aiGfLn~~vee~l~~Y~~~f 328 (381)
+||+++++. ....+++++.|+|||++||+.+|+.|++|+ +.+++++|||||+++|++++.|++.|
T Consensus 160 ~NKn~~~l~--------------~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~y 225 (246)
T PF05822_consen 160 FNKNESALE--------------DSPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAY 225 (246)
T ss_dssp T-HHHHHHT--------------THHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCS
T ss_pred eeCCccccc--------------CchHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcC
Confidence 999998773 112245677899999999999999999999 78999999999999999999999999
Q ss_pred CEEEecCCchHHHHHhcCccc
Q 016842 329 DIVYLPTMLALLVYRRLSPPQ 349 (381)
Q Consensus 329 DIVlv~D~t~~~~~~~l~~~~ 349 (381)
|||+++|+||++|++||+.|+
T Consensus 226 DIVlv~D~tm~v~~~il~~I~ 246 (246)
T PF05822_consen 226 DIVLVDDQTMDVPNAILQSIL 246 (246)
T ss_dssp SEEEET--B-HHHHHHHHHH-
T ss_pred CEEEECCCCchHHHHHHHHhC
Confidence 999999999999999998774
No 4
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=8.6e-30 Score=229.77 Aligned_cols=201 Identities=20% Similarity=0.268 Sum_probs=160.9
Q ss_pred CceEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhC
Q 016842 83 SKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEG 162 (381)
Q Consensus 83 ~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~ 162 (381)
.|..|++|||||||. .|+-..+.+++++.-|+ +|++.+. +.++|.++.+.+|++...
T Consensus 2 kk~vi~sDFDGTITl-------~Ds~~~itdtf~~~e~k---~l~~~vl----s~tiS~rd~~g~mf~~i~--------- 58 (220)
T COG4359 2 KKPVIFSDFDGTITL-------NDSNDYITDTFGPGEWK---ALKDGVL----SKTISFRDGFGRMFGSIH--------- 58 (220)
T ss_pred CceEEEecCCCceEe-------cchhHHHHhccCchHHH---HHHHHHh----hCceeHHHHHHHHHHhcC---------
Confidence 578999999999999 78889999999964444 4566553 689999999999977654
Q ss_pred CCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCC-CCcceEEeeeeEEcCCCcE-E
Q 016842 163 GLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKS-FKNVKIVSNRMVFDKDGHL-V 240 (381)
Q Consensus 163 glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~-~~ni~IvSN~m~FdedG~l-~ 240 (381)
.+.+++.+++.+ ++.++|||+||+++++++++|++|+|+|...+|.++|++..|.. ..+++|+||...++.+|.+ +
T Consensus 59 -~s~~Eile~llk-~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i 136 (220)
T COG4359 59 -SSLEEILEFLLK-DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSI 136 (220)
T ss_pred -CCHHHHHHHHHh-hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceee
Confidence 556888888875 59999999999999999999999999999999999999987652 4578999999999998876 3
Q ss_pred ecCCCccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhh
Q 016842 241 SFKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENN 320 (381)
Q Consensus 241 gf~~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~ 320 (381)
-++......++|. +.++.|++ ....++|+|||.+|+.+|+ .+|++||+..|-.+|+++
T Consensus 137 ~~~~ds~fG~dK~------------------~vI~~l~e--~~e~~fy~GDsvsDlsaak--lsDllFAK~~L~nyc~eq 194 (220)
T COG4359 137 KYTDDSQFGHDKS------------------SVIHELSE--PNESIFYCGDSVSDLSAAK--LSDLLFAKDDLLNYCREQ 194 (220)
T ss_pred ecCCccccCCCcc------------------hhHHHhhc--CCceEEEecCCcccccHhh--hhhhHhhHHHHHHHHHHc
Confidence 3333233333333 23444442 3567999999999999999 899999999999999997
Q ss_pred Hhh---hhhccCE
Q 016842 321 LDN---YRNAFDI 330 (381)
Q Consensus 321 l~~---Y~~~fDI 330 (381)
-.+ |.+|+||
T Consensus 195 n~~f~~fe~F~eI 207 (220)
T COG4359 195 NLNFLEFETFYEI 207 (220)
T ss_pred CCCCcccccHHHH
Confidence 544 6677765
No 5
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.95 E-value=1.6e-27 Score=225.83 Aligned_cols=192 Identities=22% Similarity=0.253 Sum_probs=147.7
Q ss_pred eEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Q 016842 85 LQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGL 164 (381)
Q Consensus 85 lqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~gl 164 (381)
.+|+||||+||+. ++|...+++..+++.+ ..+|.+.|.+ ..+.+++.++.++|.++|+
T Consensus 1 ~LvvfDFD~TIvd-------~dsd~~v~~~l~~~~~--~~~l~~~~~~-------------~~wt~~m~~vl~~L~~~gv 58 (234)
T PF06888_consen 1 ILVVFDFDHTIVD-------QDSDDWVIELLPPEEL--PEELRESYPK-------------GGWTEYMDRVLQLLHEQGV 58 (234)
T ss_pred CEEEEeCCCCccC-------CccHHHHHHhcCCccc--HHHHHHhccc-------------cchHHHHHHHHHHHHHcCC
Confidence 3799999999999 7999999999885432 2234444421 1244778889999999999
Q ss_pred CHHHHHHHHHccCCcccccHHHHHHHH--HHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEec
Q 016842 165 TYDAIKKSVSNALIAFRDGVVKLFEFL--EERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSF 242 (381)
Q Consensus 165 t~~~i~e~v~~~~i~LrpG~~efl~~L--~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf 242 (381)
|++++.+.++ ++++.||+.+|+++| ++.|++++|+|+|+..+|+.+|+++ |+...-.+||||++.|+++|++.-.
T Consensus 59 t~~~I~~~l~--~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~-gl~~~f~~I~TNpa~~~~~G~l~v~ 135 (234)
T PF06888_consen 59 TPEDIRDALR--SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHH-GLRDCFSEIFTNPACFDADGRLRVR 135 (234)
T ss_pred CHHHHHHHHH--cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhC-CCccccceEEeCCceecCCceEEEe
Confidence 9999999998 699999999999999 5689999999999999999999988 6522123899999999999998533
Q ss_pred CCCccccCCCCcccccccccccccCCCCCCCCcccccC-----CCCceEEEEcCCCCCcccccCC-Cccceeee-ccC
Q 016842 243 KGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASV-----KNRTNVLLLGDHIGDLGMSDGL-KYETRISV-GFL 313 (381)
Q Consensus 243 ~~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l-----~~r~nVI~IGDg~~Dl~ma~gl-~~d~v~ai-GfL 313 (381)
+... |+|.++...+||.. +++.|.+- ..+++|||||||.||+|++..+ ..|.||++ ||-
T Consensus 136 pyh~-h~C~~C~~NmCK~~-----------il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~ 201 (234)
T PF06888_consen 136 PYHS-HGCSLCPPNMCKGK-----------ILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYP 201 (234)
T ss_pred CccC-CCCCcCCCccchHH-----------HHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecCCCCh
Confidence 3212 77777766677642 23333221 1367999999999999999887 58988654 443
No 6
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.94 E-value=5e-27 Score=218.24 Aligned_cols=197 Identities=17% Similarity=0.203 Sum_probs=149.1
Q ss_pred EEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC
Q 016842 86 QVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLT 165 (381)
Q Consensus 86 qVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~glt 165 (381)
||+||||||||+ .|+.+.+++.++++.+++.. +.|+ ++++|.+|+++.|++||+...
T Consensus 1 ~~~fDFDgTit~-------~d~~~~~~~~~~~~~~~~~~---~~~~----~g~~~~~e~~~~~~~~~~~~~--------- 57 (214)
T TIGR03333 1 FIICDFDGTITN-------NDNIISIMKQFAPPEWEALK---DGVL----SKTLSIQEGVGRMFGLLPSSL--------- 57 (214)
T ss_pred CEEeccCCCCCc-------chhHHHHHHHhCcHHHHHHH---HHHH----cCCccHHHHHHHHHhhCCCch---------
Confidence 689999999999 68899999998765555433 3343 367999999999999997442
Q ss_pred HHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCC
Q 016842 166 YDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGK 245 (381)
Q Consensus 166 ~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~ 245 (381)
.+++.+++.+ .++++||+.+++++|+++|++++|+|+|...+|+.+|+.. +. ...|+||++.|++++.-..++.|
T Consensus 58 ~~~~~~~~~~-~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~---~~~i~~n~~~~~~~~~~~~~p~~ 132 (214)
T TIGR03333 58 KEEITSFVLE-TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI-VE---KDRIYCNEADFSNEYIHIDWPHP 132 (214)
T ss_pred HHHHHHHHHh-cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh-CC---cccEEeceeEeeCCeeEEeCCCC
Confidence 4677787665 5899999999999999999999999999999999999976 32 24799999999865444556655
Q ss_pred ccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhh
Q 016842 246 TIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYR 325 (381)
Q Consensus 246 ~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~ 325 (381)
....+.. .|+.||.. .++.+. ....+++|||||.+|++|+. .+|.++++++|.++++++..+|.
T Consensus 133 ~~~~~~~-~cg~~K~~-----------~l~~~~--~~~~~~i~iGDg~~D~~~a~--~Ad~~~ar~~l~~~~~~~~~~~~ 196 (214)
T TIGR03333 133 CDGTCQN-QCGCCKPS-----------LIRKLS--EPNDYHIVIGDSVTDVEAAK--QSDLCFARDYLLNECEELGLNHA 196 (214)
T ss_pred Ccccccc-CCCCCHHH-----------HHHHHh--hcCCcEEEEeCCHHHHHHHH--hCCeeEehHHHHHHHHHcCCCcc
Confidence 5432221 12333321 222222 13457999999999999999 78999999999999988776654
Q ss_pred h
Q 016842 326 N 326 (381)
Q Consensus 326 ~ 326 (381)
.
T Consensus 197 ~ 197 (214)
T TIGR03333 197 P 197 (214)
T ss_pred C
Confidence 3
No 7
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.93 E-value=2.6e-25 Score=207.21 Aligned_cols=200 Identities=17% Similarity=0.211 Sum_probs=147.2
Q ss_pred CceEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhC
Q 016842 83 SKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEG 162 (381)
Q Consensus 83 ~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~ 162 (381)
++.+|+||||||||+ .++.+.+++++++..+++. .++|+ ++++++++.++.|++||...
T Consensus 2 ~~~~vifDfDgTi~~-------~d~~~~~~~~~~~~~~~~i---~~~~~----~g~~~~~~~~~~~~~~l~~~------- 60 (219)
T PRK09552 2 MSIQIFCDFDGTITN-------NDNIIAIMKKFAPPEWEEL---KDDIL----SQELSIQEGVGQMFQLLPSN------- 60 (219)
T ss_pred CCcEEEEcCCCCCCc-------chhhHHHHHHhCHHHHHHH---HHHHH----hCCcCHHHHHHHHHHhCCCC-------
Confidence 366899999999999 4666777888876444443 44443 46799999999999987632
Q ss_pred CCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEec
Q 016842 163 GLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSF 242 (381)
Q Consensus 163 glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf 242 (381)
.++++.+++.+ +++++||+.+++++|+++|++++|+|+|...+|+.+|++. - +...|+||...|++++....+
T Consensus 61 --~~~~~~~~~~~-~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~---~~~~i~~n~~~~~~~~~~~~k 133 (219)
T PRK09552 61 --LKEEIIQFLLE-TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-I---PKEQIYCNGSDFSGEYITITW 133 (219)
T ss_pred --chHHHHHHHHh-CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-C---CcCcEEEeEEEecCCeeEEec
Confidence 24677776654 4899999999999999999999999999999999999986 2 225799999999876555666
Q ss_pred CCCccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHh
Q 016842 243 KGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLD 322 (381)
Q Consensus 243 ~~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~ 322 (381)
+.|..+.+... ++.+|. ..++.+. ....+++|||||.+|++||. .++.++++++|.++++++..
T Consensus 134 p~p~~~~~~~~-~~~~K~-----------~~l~~~~--~~~~~~i~iGDs~~Di~aa~--~Ag~~~a~~~l~~~~~~~~~ 197 (219)
T PRK09552 134 PHPCDEHCQNH-CGCCKP-----------SLIRKLS--DTNDFHIVIGDSITDLEAAK--QADKVFARDFLITKCEELGI 197 (219)
T ss_pred cCCcccccccc-CCCchH-----------HHHHHhc--cCCCCEEEEeCCHHHHHHHH--HCCcceeHHHHHHHHHHcCC
Confidence 66655322110 111211 0122222 12458999999999999998 78999999999988888776
Q ss_pred hhhh
Q 016842 323 NYRN 326 (381)
Q Consensus 323 ~Y~~ 326 (381)
+|..
T Consensus 198 ~~~~ 201 (219)
T PRK09552 198 PYTP 201 (219)
T ss_pred Cccc
Confidence 6543
No 8
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.90 E-value=1e-23 Score=195.25 Aligned_cols=202 Identities=19% Similarity=0.200 Sum_probs=160.5
Q ss_pred hcCCCceEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 016842 79 MAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGL 158 (381)
Q Consensus 79 ~~g~~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~L 158 (381)
+.+..+.+++||||.||.. ++|-..|.+... ..+..++|...|. + ..+.|++.++++.
T Consensus 8 ~~~~~ril~~FDFD~TIid-------~dSD~wVv~~lp--~~~l~~qL~~t~p-----------~--~~Wne~M~rv~k~ 65 (256)
T KOG3120|consen 8 ASSSPRILLVFDFDRTIID-------QDSDNWVVDELP--TTDLFNQLRDTYP-----------K--GFWNELMDRVFKE 65 (256)
T ss_pred cccCCcEEEEEecCceeec-------CCcchHHHHhcc--cchhHHHHHHhcc-----------c--chHHHHHHHHHHH
Confidence 4567899999999999999 567777777654 2233345555441 1 2567889999999
Q ss_pred HHhCCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCC-CEEEEecChHHHHHHHHHHhcCC--CCCcceEEeeeeEEcC
Q 016842 159 LIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDI-PVLIFSAGLADIIEEVLRQKVHK--SFKNVKIVSNRMVFDK 235 (381)
Q Consensus 159 l~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gI-pv~I~SaG~~~~Ie~vL~~~~g~--~~~ni~IvSN~m~Fde 235 (381)
|+++|++.+++.+.++ .+++.||+.++++.+++.|- .++|+|+.+..+|+.+|+.+ ++ .| ..|++|+..||+
T Consensus 66 Lheqgv~~~~ik~~~r--~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~-~~~d~F--~~IfTNPa~~da 140 (256)
T KOG3120|consen 66 LHEQGVRIAEIKQVLR--SIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAA-GIHDLF--SEIFTNPACVDA 140 (256)
T ss_pred HHHcCCCHHHHHHHHh--cCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHc-cHHHHH--HHHhcCCcccCC
Confidence 9999999999999998 59999999999999999995 99999999999999999987 54 23 389999999999
Q ss_pred CCcEEecCCCccccCCCCcccccccccccccCCCCCCCCccccc-----CCCCceEEEEcCCCCCcccccCC-Cccce-e
Q 016842 236 DGHLVSFKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNAS-----VKNRTNVLLLGDHIGDLGMSDGL-KYETR-I 308 (381)
Q Consensus 236 dG~l~gf~~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~-----l~~r~nVI~IGDg~~Dl~ma~gl-~~d~v-~ 308 (381)
+|.+.--+....|+|+.+...+||.. ++.++.. -..+.++||+|||.||+|+...+ .+|++ .
T Consensus 141 ~G~L~v~pyH~~hsC~~CPsNmCKg~-----------Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~amp 209 (256)
T KOG3120|consen 141 SGRLLVRPYHTQHSCNLCPSNMCKGL-----------VLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMP 209 (256)
T ss_pred CCcEEeecCCCCCccCcCchhhhhhH-----------HHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecc
Confidence 99996555557899999988888642 2222221 11455999999999999999888 57876 7
Q ss_pred eeccCchHHH
Q 016842 309 SVGFLNDNIE 318 (381)
Q Consensus 309 aiGfLn~~ve 318 (381)
++||-..+..
T Consensus 210 Rkgfpl~k~~ 219 (256)
T KOG3120|consen 210 RKGFPLWKLI 219 (256)
T ss_pred cCCCchHhhh
Confidence 8999877633
No 9
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.84 E-value=3e-20 Score=166.51 Aligned_cols=187 Identities=18% Similarity=0.226 Sum_probs=128.0
Q ss_pred ceEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 016842 84 KLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGG 163 (381)
Q Consensus 84 klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~g 163 (381)
|+.|||||||||+. .++...+++.+.++.+++. .+.+.... ...+.. +++. ..+...+
T Consensus 1 ~~~iiFD~dgTL~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~-------~~~~---~~~~~~~ 58 (188)
T TIGR01489 1 KVVVVSDFDGTITL-------NDSDDWITDKFGPPEANRL---LDGVLSKT--LSIKFM-------DRRM---KGLLPSG 58 (188)
T ss_pred CeEEEEeCCCcccC-------CCchHHHHHhcCcchhhHH---HHHHhhcC--CchHHH-------HHHH---HHHhhcC
Confidence 67899999999999 3555667776654333332 22222100 011111 2222 2233467
Q ss_pred CCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecC
Q 016842 164 LTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFK 243 (381)
Q Consensus 164 lt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~ 243 (381)
++.+++.+++.. ++++||+.+++++|+++|++++|+|+|....++.++++. +...--..|++|.+.|+++|.+.+++
T Consensus 59 ~~~~~~~~~~~~--~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l~~~f~~i~~~~~~~~~~g~~~~~~ 135 (188)
T TIGR01489 59 LKEDEILEVLKS--APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI-GEKDVFIEIYSNPASFDNDGRHIVWP 135 (188)
T ss_pred CCHHHHHHHHHh--CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc-CChhheeEEeccCceECCCCcEEEec
Confidence 888899998874 799999999999999999999999999999999999876 54110137999999999999998887
Q ss_pred CCccccCCCCcccccccccccccCCCCCCCCcccccCCC-CceEEEEcCCCCCcccccCCCccceeeec
Q 016842 244 GKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKN-RTNVLLLGDHIGDLGMSDGLKYETRISVG 311 (381)
Q Consensus 244 ~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~-r~nVI~IGDg~~Dl~ma~gl~~d~v~aiG 311 (381)
.++..+. ......+|. ..++.+. .. ..+++|+|||.+|++||. .+|.+||++
T Consensus 136 ~~~~~~~-~~~~g~~K~-----------~~~~~~~--~~~~~~~i~iGD~~~D~~aa~--~~d~~~ar~ 188 (188)
T TIGR01489 136 HHCHGCC-SCPCGCCKG-----------KVIHKLS--EPKYQHIIYIGDGVTDVCPAK--LSDVVFAKE 188 (188)
T ss_pred CCCCccC-cCCCCCCHH-----------HHHHHHH--hhcCceEEEECCCcchhchHh--cCCccccCC
Confidence 6543322 222222221 1222222 12 578999999999999999 789999875
No 10
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.83 E-value=1.9e-20 Score=170.76 Aligned_cols=203 Identities=21% Similarity=0.242 Sum_probs=147.0
Q ss_pred ceEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 016842 84 KLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGG 163 (381)
Q Consensus 84 klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~g 163 (381)
+=.|+||.|.|+.. ..-...+..-+. ..++..+..+..+-.| ++++|-++. ..+|| .
T Consensus 16 ~~aVcFDvDSTvi~-------eEgIdelA~~~G--~~~~Va~~T~rAMng~----~~F~eaL~~-------Rl~ll---q 72 (227)
T KOG1615|consen 16 ADAVCFDVDSTVIQ-------EEGIDELAAYCG--VGEAVAEVTRRAMNGE----ADFQEALAA-------RLSLL---Q 72 (227)
T ss_pred cCeEEEecCcchhH-------HhhHHHHHHHhC--chHHHHHHHHHHhCCC----CcHHHHHHH-------HHHHh---c
Confidence 45799999999998 233333333232 2344445555665555 555544332 22233 2
Q ss_pred CCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecC
Q 016842 164 LTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFK 243 (381)
Q Consensus 164 lt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~ 243 (381)
-+..++.+++.+.++.|.||++||+..|+++|..++++|+|+..+|++|-.+. |+ |-..||||.|.||.+|++.||+
T Consensus 73 p~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~L-gi--~~~n~yAN~l~fd~~Gk~~gfd 149 (227)
T KOG1615|consen 73 PLQVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQL-GI--PKSNIYANELLFDKDGKYLGFD 149 (227)
T ss_pred ccHHHHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHh-CC--cHhhhhhheeeeccCCcccccc
Confidence 34677888888888999999999999999999999999999999999998876 86 4347999999999999999998
Q ss_pred --CCccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeecc----CchHH
Q 016842 244 --GKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGF----LNDNI 317 (381)
Q Consensus 244 --~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGf----Ln~~v 317 (381)
+|+..+-.|.+..... +. -.....+++||||.||+.|.. +++. .||| +.+.|
T Consensus 150 ~~~ptsdsggKa~~i~~l---------------rk---~~~~~~~~mvGDGatDlea~~--pa~a--fi~~~g~~~r~~v 207 (227)
T KOG1615|consen 150 TNEPTSDSGGKAEVIALL---------------RK---NYNYKTIVMVGDGATDLEAMP--PADA--FIGFGGNVIREGV 207 (227)
T ss_pred cCCccccCCccHHHHHHH---------------Hh---CCChheeEEecCCccccccCC--chhh--hhccCCceEcHhh
Confidence 5888888887654321 11 113568999999999999987 5443 3444 35778
Q ss_pred HhhHhhhhhccCEEEec
Q 016842 318 ENNLDNYRNAFDIVYLP 334 (381)
Q Consensus 318 ee~l~~Y~~~fDIVlv~ 334 (381)
..+.+||.+.|++....
T Consensus 208 k~nak~~~~~f~~L~~~ 224 (227)
T KOG1615|consen 208 KANAKWYVTDFYVLGGD 224 (227)
T ss_pred HhccHHHHHHHHHHccc
Confidence 88999999988876544
No 11
>PLN02954 phosphoserine phosphatase
Probab=99.82 E-value=1.8e-19 Score=167.17 Aligned_cols=185 Identities=18% Similarity=0.185 Sum_probs=127.5
Q ss_pred eEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Q 016842 85 LQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGL 164 (381)
Q Consensus 85 lqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~gl 164 (381)
-.||||||||||. .++...++++++. ....+++.+.|.- ++++.++-+..++..|. .
T Consensus 13 k~viFDfDGTL~~-------~~~~~~~~~~~g~--~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~----------~ 69 (224)
T PLN02954 13 DAVCFDVDSTVCV-------DEGIDELAEFCGA--GEAVAEWTAKAMG----GSVPFEEALAARLSLFK----------P 69 (224)
T ss_pred CEEEEeCCCcccc-------hHHHHHHHHHcCC--hHHHHHHHHHHHC----CCCCHHHHHHHHHHHcC----------C
Confidence 3577899999999 5777888888862 1222333444543 45677665544433322 3
Q ss_pred CHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCC
Q 016842 165 TYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKG 244 (381)
Q Consensus 165 t~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~ 244 (381)
+.+++.+++++....+.||+.+++++|+++|++++|+|+|....++.+++.+ |. +..++++|.+.|+++|.++|+..
T Consensus 70 ~~~~~~~~~~~~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~-gi--~~~~~~~~~~~~~~~g~~~g~~~ 146 (224)
T PLN02954 70 SLSQVEEFLEKRPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL-GI--PPENIFANQILFGDSGEYAGFDE 146 (224)
T ss_pred CHHHHHHHHHHccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh-CC--ChhhEEEeEEEEcCCCcEECccC
Confidence 4667777777655789999999999999999999999999999999999986 64 33469999999999999988753
Q ss_pred C--ccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccC
Q 016842 245 K--TIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFL 313 (381)
Q Consensus 245 ~--~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfL 313 (381)
. ......|.+... .+.+.....+++|+|||.+|++|+....++.+++.|..
T Consensus 147 ~~~~~~~~~K~~~i~------------------~~~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~ 199 (224)
T PLN02954 147 NEPTSRSGGKAEAVQ------------------HIKKKHGYKTMVMIGDGATDLEARKPGGADLFIGYGGV 199 (224)
T ss_pred CCcccCCccHHHHHH------------------HHHHHcCCCceEEEeCCHHHHHhhhcCCCCEEEecCCC
Confidence 1 111122332111 11110113579999999999999873336666666643
No 12
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.81 E-value=1.8e-19 Score=160.50 Aligned_cols=169 Identities=25% Similarity=0.310 Sum_probs=117.4
Q ss_pred EEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 016842 87 VIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTY 166 (381)
Q Consensus 87 Vi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~glt~ 166 (381)
++||||||||. .++.+.+++.+.+. ..+..++.+.|.. +.++..+.+..+...|. +...
T Consensus 2 ~~fD~DgTl~~-------~~s~~~~~~~~~~~-~~~~~~~~~~~~~----g~i~~~~~~~~~~~~~~---------~~~~ 60 (177)
T TIGR01488 2 AIFDFDGTLTR-------QDSLIDLLAKLLGT-NDEVIELTRLAPS----GRISFEDALGRRLALLH---------RSRS 60 (177)
T ss_pred EEecCcccccc-------chhhHHHHHHHhCC-hHHHHHHHHHHHC----CCCCHHHHHHHHHHHhC---------CCCH
Confidence 79999999999 68888888876531 1222344445543 45667665554444332 4554
Q ss_pred HHHHH-HHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecC-C
Q 016842 167 DAIKK-SVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFK-G 244 (381)
Q Consensus 167 ~~i~e-~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~-~ 244 (381)
+++.+ ++.+ .++++||+.+++++|+++|++++|+|+|...+|+++++++ |. + .+++|.+.++++|.++|.. +
T Consensus 61 ~~~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~-g~--~--~~~~~~~~~~~~g~~~g~~~~ 134 (177)
T TIGR01488 61 EEVAKEFLAR-QVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL-GI--D--DVFANRLEFDDNGLLTGPIEG 134 (177)
T ss_pred HHHHHHHHHh-cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CC--c--hheeeeEEECCCCEEeCccCC
Confidence 56665 6654 5889999999999999999999999999999999999987 64 3 7999999999889777632 2
Q ss_pred -CccccCCCCcccccccccccccCCCCCCCCcccc-cCC-CCceEEEEcCCCCCccccc
Q 016842 245 -KTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNA-SVK-NRTNVLLLGDHIGDLGMSD 300 (381)
Q Consensus 245 -~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~-~l~-~r~nVI~IGDg~~Dl~ma~ 300 (381)
+.....+|... ++.+. +.. ...+++|+|||.+|++|+.
T Consensus 135 ~~~~~~~~K~~~------------------l~~~~~~~~~~~~~~~~iGDs~~D~~~~~ 175 (177)
T TIGR01488 135 QVNPEGECKGKV------------------LKELLEESKITLKKIIAVGDSVNDLPMLK 175 (177)
T ss_pred cccCCcchHHHH------------------HHHHHHHhCCCHHHEEEEeCCHHHHHHHh
Confidence 12222223221 11111 111 2468999999999999986
No 13
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.74 E-value=3.4e-17 Score=148.45 Aligned_cols=181 Identities=25% Similarity=0.337 Sum_probs=120.6
Q ss_pred EEEEeCCccccccccCCCccccHHHHHhc-cC-hhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 016842 86 QVIADFDGTLTRYFINGSRGQSSHGLLQQ-GN-PEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGG 163 (381)
Q Consensus 86 qVi~DFDgTIT~~~~~g~~~dts~~il~~-~~-~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~g 163 (381)
.|+|||||||+. .++.+..+.. ++ +..... +.+.|. .+.++..+....+.++|.... ..
T Consensus 6 ~viFD~DGTLid-------~~~~~~~~~~~~~~~~~~~~---~~~~~~----~g~~~~~~~~~~~~~~~~~~~-----~~ 66 (201)
T TIGR01491 6 LIIFDLDGTLTD-------VMSSWEYLHRRLETCGLAKK---NAELFF----SGRISYEEWARLDASLWKRRS-----GR 66 (201)
T ss_pred EEEEeCCCCCcC-------CccHHHHHHHHhCchHHHHH---HHHHHH----cCCCCHHHHHHHHHHHHhhcc-----cC
Confidence 599999999999 3454555544 33 212222 222232 356888888777777776432 14
Q ss_pred CCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecC
Q 016842 164 LTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFK 243 (381)
Q Consensus 164 lt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~ 243 (381)
+..+++.++.. .+.++||+.+++++|+++|++++|+|+|...+++.++++. |. . .+++|.+.++++|......
T Consensus 67 ~~~~~~~~~~~--~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-g~--~--~~~~~~~~~~~~g~~~p~~ 139 (201)
T TIGR01491 67 LRREEVEEIFK--EISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL-NP--D--YVYSNELVFDEKGFIQPDG 139 (201)
T ss_pred CCHHHHHHHHH--hCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh-CC--C--eEEEEEEEEcCCCeEecce
Confidence 45677877765 4789999999999999999999999999999999999987 64 2 6899999998877665321
Q ss_pred CCccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeee
Q 016842 244 GKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISV 310 (381)
Q Consensus 244 ~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~ai 310 (381)
.......+|.+. +.. ..+.+ .+ ...+++|+|||.+|++|+. .++..++.
T Consensus 140 ~~~~~~~~k~~~-~~~-------------~~~~~-~~-~~~~~i~iGDs~~D~~~a~--~ag~~~a~ 188 (201)
T TIGR01491 140 IVRVTFDNKGEA-VER-------------LKREL-NP-SLTETVAVGDSKNDLPMFE--VADISISL 188 (201)
T ss_pred eeEEccccHHHH-HHH-------------HHHHh-CC-CHHHEEEEcCCHhHHHHHH--hcCCeEEE
Confidence 111222233211 100 01111 11 2457999999999999998 55555543
No 14
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.66 E-value=1.5e-15 Score=140.39 Aligned_cols=177 Identities=20% Similarity=0.282 Sum_probs=116.1
Q ss_pred eEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Q 016842 85 LQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGL 164 (381)
Q Consensus 85 lqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~gl 164 (381)
-.|+|||||||+. .++.+.+++.++.+ ....+++.+|.. +.++.++..... ...+ .+.
T Consensus 15 k~iiFD~DGTL~~-------~~~~~~l~~~~g~~--~~~~~~~~~~~~----g~~~~~~~~~~~-------~~~~--~~~ 72 (219)
T TIGR00338 15 KLVVFDMDSTLIN-------AETIDEIAKIAGVE--EEVSEITERAMR----GELDFKASLRER-------VALL--KGL 72 (219)
T ss_pred CEEEEeCcccCCC-------chHHHHHHHHhCCH--HHHHHHHHHHHc----CCCCHHHHHHHH-------HHHh--CCC
Confidence 3899999999999 45677788776621 112233444432 345665543322 2222 356
Q ss_pred CHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecC-
Q 016842 165 TYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFK- 243 (381)
Q Consensus 165 t~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~- 243 (381)
+.+.+.++.+ .++++||+.++++.|+++|++++|+|+|....++.++++. +. + .+++|.+.++ +|.+++..
T Consensus 73 ~~~~~~~~~~--~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-~i--~--~~~~~~~~~~-~~~~~~~~~ 144 (219)
T TIGR00338 73 PVELLKEVRE--NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL-GL--D--AAFANRLEVE-DGKLTGLVE 144 (219)
T ss_pred CHHHHHHHHh--cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CC--C--ceEeeEEEEE-CCEEEEEec
Confidence 6777777765 4789999999999999999999999999999999999876 64 2 5899999997 57766642
Q ss_pred CCccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceee
Q 016842 244 GKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRIS 309 (381)
Q Consensus 244 ~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~a 309 (381)
++.....+|.. .... ..+.+ .+ ...+++|+|||.+|+.++. .++..++
T Consensus 145 ~~~~~~~~k~~-~~~~-------------~~~~~-~~-~~~~~i~iGDs~~Di~aa~--~ag~~i~ 192 (219)
T TIGR00338 145 GPIVDASYKGK-TLLI-------------LLRKE-GI-SPENTVAVGDGANDLSMIK--AAGLGIA 192 (219)
T ss_pred CcccCCcccHH-HHHH-------------HHHHc-CC-CHHHEEEEECCHHHHHHHH--hCCCeEE
Confidence 32221111221 1110 11111 11 3458999999999999998 4454433
No 15
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.64 E-value=2e-15 Score=149.72 Aligned_cols=224 Identities=16% Similarity=0.151 Sum_probs=144.9
Q ss_pred hHHHHHHHHHHhc----------CC---CceEEEEeCCccccccccCCCccccHHHHHhccC-hhHHHHHHHHHHhhCCC
Q 016842 68 QSLQNKISQIRMA----------GP---SKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN-PEYDAKRQALYEYYHPL 133 (381)
Q Consensus 68 ~~~~~kl~~~~~~----------g~---~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~-~e~~~~~~~L~~~Y~pi 133 (381)
..+...+..+... ++ +.-.|+|||||||+. .++...+.+.++ ++ +..++.+.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~LvvfDmDGTLI~-------~e~i~eia~~~g~~~---~v~~it~~~m~G 150 (322)
T PRK11133 81 GSLTPRATRLAHELGLDVAPLGKIPHLRTPGLLVMDMDSTAIQ-------IECIDEIAKLAGTGE---EVAEVTERAMRG 150 (322)
T ss_pred hhHHHHHHHHHhhcCCcEEEecCcccccCCCEEEEECCCCCcc-------hHHHHHHHHHhCCch---HHHHHHHHHHcC
Confidence 4566666655443 33 245799999999997 566666777654 22 223344455544
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHH
Q 016842 134 EFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVL 213 (381)
Q Consensus 134 E~d~~is~eEk~~~M~Ew~~~~~~Ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL 213 (381)
| +++++.+... ..++ .|...+.+.++.+ .+++.||+.+++++|+++|++++|+|+|+..+++.++
T Consensus 151 e----ldf~esl~~r-------v~~l--~g~~~~il~~v~~--~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~ 215 (322)
T PRK11133 151 E----LDFEASLRQR-------VATL--KGADANILQQVRE--NLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLR 215 (322)
T ss_pred C----cCHHHHHHHH-------HHHh--CCCCHHHHHHHHH--hCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHH
Confidence 4 5555543322 1222 3555555665544 5899999999999999999999999999999999888
Q ss_pred HHhcCCCCCcceEEeeeeEEcCCCcEEec-CCCccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCC
Q 016842 214 RQKVHKSFKNVKIVSNRMVFDKDGHLVSF-KGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDH 292 (381)
Q Consensus 214 ~~~~g~~~~ni~IvSN~m~FdedG~l~gf-~~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg 292 (381)
++. +. .++++|.+.+. +|+++|- .++.++.-.|.+.... ..+.+ .+ ...+++++|||
T Consensus 216 ~~L-gl----d~~~an~lei~-dg~ltg~v~g~iv~~k~K~~~L~~--------------la~~l-gi-~~~qtIaVGDg 273 (322)
T PRK11133 216 DKL-RL----DAAVANELEIM-DGKLTGNVLGDIVDAQYKADTLTR--------------LAQEY-EI-PLAQTVAIGDG 273 (322)
T ss_pred HHc-CC----CeEEEeEEEEE-CCEEEeEecCccCCcccHHHHHHH--------------HHHHc-CC-ChhhEEEEECC
Confidence 765 64 37999999995 6888664 3444333333322110 01111 11 34689999999
Q ss_pred CCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCchHHHHHhcCccc
Q 016842 293 IGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTMLALLVYRRLSPPQ 349 (381)
Q Consensus 293 ~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t~~~~~~~l~~~~ 349 (381)
.||+.|+. .++..++ | |.+ +.=+...|.++ +...++-++.+|..-+
T Consensus 274 ~NDl~m~~--~AGlgiA--~-nAk-----p~Vk~~Ad~~i-~~~~l~~~l~~~~~~~ 319 (322)
T PRK11133 274 ANDLPMIK--AAGLGIA--Y-HAK-----PKVNEQAQVTI-RHADLMGVLCILSGSL 319 (322)
T ss_pred HHHHHHHH--HCCCeEE--e-CCC-----HHHHhhCCEEe-cCcCHHHHHHHhcccc
Confidence 99999998 5555444 4 321 11244667666 5778888888888766
No 16
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.63 E-value=2.1e-15 Score=141.36 Aligned_cols=173 Identities=22% Similarity=0.293 Sum_probs=120.9
Q ss_pred CceEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhC
Q 016842 83 SKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEG 162 (381)
Q Consensus 83 ~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~ 162 (381)
.+-.++||||+||+. ..++..+.... ....+..++.++.+++|. .+++..+. ...+| .
T Consensus 4 ~~~L~vFD~D~TLi~--------~~~~~~~~~~~-g~~~~v~~~t~~~~~~~~----~~~~~~~~-------~v~~l--~ 61 (212)
T COG0560 4 MKKLAVFDLDGTLIN--------AELIDELARGA-GVGEEVLAITERAMRGEL----DFEESLRL-------RVALL--K 61 (212)
T ss_pred ccceEEEecccchhh--------HHHHHHHHHHh-CCHHHHHHHHHHHhcccc----cHHHHHHH-------HHHHh--C
Confidence 355789999999998 34555555433 123444455555555554 34433333 33333 3
Q ss_pred CCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEec
Q 016842 163 GLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSF 242 (381)
Q Consensus 163 glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf 242 (381)
|++.+.+.++.++. +.++||+.+++++++++|..++|+|||+..+++++.++. |+. .++||.+..++ |.++|.
T Consensus 62 g~~~~~v~~~~~~~-~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l-g~d----~~~an~l~~~d-G~ltG~ 134 (212)
T COG0560 62 GLPVEVLEEVREEF-LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL-GID----YVVANELEIDD-GKLTGR 134 (212)
T ss_pred CCCHHHHHHHHHhc-CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh-CCc----hheeeEEEEeC-CEEece
Confidence 89999999999853 899999999999999999999999999999999998876 752 69999999987 877775
Q ss_pred C-CCccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCccccc
Q 016842 243 K-GKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSD 300 (381)
Q Consensus 243 ~-~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~ 300 (381)
. ++.+..-+|.....+. ...+ .. .-.+++.+|||.||+.|..
T Consensus 135 v~g~~~~~~~K~~~l~~~--------------~~~~-g~-~~~~~~a~gDs~nDlpml~ 177 (212)
T COG0560 135 VVGPICDGEGKAKALREL--------------AAEL-GI-PLEETVAYGDSANDLPMLE 177 (212)
T ss_pred eeeeecCcchHHHHHHHH--------------HHHc-CC-CHHHeEEEcCchhhHHHHH
Confidence 4 4455544454332211 0000 00 1357999999999999987
No 17
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.63 E-value=3e-15 Score=136.91 Aligned_cols=159 Identities=20% Similarity=0.265 Sum_probs=112.0
Q ss_pred EEEEeCCccccccccCCCccccHHHHHhccC-hhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Q 016842 86 QVIADFDGTLTRYFINGSRGQSSHGLLQQGN-PEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGL 164 (381)
Q Consensus 86 qVi~DFDgTIT~~~~~g~~~dts~~il~~~~-~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~gl 164 (381)
.|+||||||||. . +...+.+.++ ++.++ +. . ..+.. .+|+.+..+++...++
T Consensus 3 ~v~FD~DGTL~~-------~-~~~~~~~~~g~~~~~~----~~----~----~~~~~-------~~~~~~~~~~l~~~~~ 55 (205)
T PRK13582 3 IVCLDLEGVLVP-------E-IWIAFAEKTGIPELRA----TT----R----DIPDY-------DVLMKQRLDILDEHGL 55 (205)
T ss_pred EEEEeCCCCChh-------h-HHHHHHHHcCChHHHH----Hh----c----CCCCH-------HHHHHHHHHHHHHcCC
Confidence 589999999995 2 2233445554 33221 11 0 11223 3566677777777789
Q ss_pred CHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCC
Q 016842 165 TYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKG 244 (381)
Q Consensus 165 t~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~ 244 (381)
+.+++.++++ .+++.||+.++++.|+++ ++++|+|++...+++.++++. +. + .+++|.+.++++|.++++..
T Consensus 56 ~~~~i~~~~~--~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~-gl--~--~~f~~~~~~~~~~~i~~~~~ 127 (205)
T PRK13582 56 GLADIQEVIA--TLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL-GW--P--TLFCHSLEVDEDGMITGYDL 127 (205)
T ss_pred CHHHHHHHHH--hCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc-CC--c--hhhcceEEECCCCeEECccc
Confidence 9999998887 478999999999999999 999999999999999999986 64 2 68899999998888877642
Q ss_pred CccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccC
Q 016842 245 KTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDG 301 (381)
Q Consensus 245 ~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~g 301 (381)
+ +...|... ++.+.. ...+++|+|||.+|+.|+..
T Consensus 128 ~--~p~~k~~~------------------l~~~~~--~~~~~v~iGDs~~D~~~~~a 162 (205)
T PRK13582 128 R--QPDGKRQA------------------VKALKS--LGYRVIAAGDSYNDTTMLGE 162 (205)
T ss_pred c--ccchHHHH------------------HHHHHH--hCCeEEEEeCCHHHHHHHHh
Confidence 1 11112111 111111 24589999999999999873
No 18
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.59 E-value=5.1e-15 Score=137.72 Aligned_cols=125 Identities=19% Similarity=0.263 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEE
Q 016842 148 MEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIV 227 (381)
Q Consensus 148 M~Ew~~~~~~Ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~Iv 227 (381)
+.++.....+++...|++.+++.++++ .+++.||+.+|+++|++++ +++|+|+|+..++++++++. |+ + +++
T Consensus 39 ~~~~~~~r~~ll~~~g~~~~~i~~~~~--~i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l-gi--~--~~~ 110 (203)
T TIGR02137 39 YDVLMKQRLRILDEHGLKLGDIQEVIA--TLKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL-GF--P--TLL 110 (203)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHH--hCCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc-CC--c--hhh
Confidence 345555566677667999999999987 4799999999999999975 99999999999999999886 74 2 699
Q ss_pred eeeeEEcCCCcEEecCCCccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCC
Q 016842 228 SNRMVFDKDGHLVSFKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGL 302 (381)
Q Consensus 228 SN~m~FdedG~l~gf~~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl 302 (381)
||++.++++|.++|... .....|.. .++.+++ ...+++++|||.||+.|+..+
T Consensus 111 an~l~~~~~g~~tG~~~--~~~~~K~~------------------~l~~l~~--~~~~~v~vGDs~nDl~ml~~A 163 (203)
T TIGR02137 111 CHKLEIDDSDRVVGYQL--RQKDPKRQ------------------SVIAFKS--LYYRVIAAGDSYNDTTMLSEA 163 (203)
T ss_pred ceeeEEecCCeeECeee--cCcchHHH------------------HHHHHHh--hCCCEEEEeCCHHHHHHHHhC
Confidence 99999986587776421 11112221 1111221 123799999999999999843
No 19
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.53 E-value=5.5e-14 Score=128.25 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=87.6
Q ss_pred CCCCHHHHHHHHHcc-----CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCC
Q 016842 162 GGLTYDAIKKSVSNA-----LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKD 236 (381)
Q Consensus 162 ~glt~~~i~e~v~~~-----~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~Fded 236 (381)
.|++.+++.+++++. ...++||+.++++.++++|++++|+|+|...+++.++++. |. + +++++++.++++
T Consensus 65 ~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l-g~--~--~~~~~~l~~~~~ 139 (202)
T TIGR01490 65 AGLLEEDVRAIVEEFVNQKIESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL-GI--D--NAIGTRLEESED 139 (202)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc-CC--c--ceEecceEEcCC
Confidence 589999988776542 2468999999999999999999999999999999999875 64 2 699999999778
Q ss_pred CcEEecC-CCccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccce
Q 016842 237 GHLVSFK-GKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETR 307 (381)
Q Consensus 237 G~l~gf~-~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v 307 (381)
|.++|.. ++......|...... .+..+ .+ ....++++|||.+|+.|+. .++..
T Consensus 140 g~~~g~~~~~~~~g~~K~~~l~~--------------~~~~~-~~-~~~~~~~~gDs~~D~~~~~--~a~~~ 193 (202)
T TIGR01490 140 GIYTGNIDGNNCKGEGKVHALAE--------------LLAEE-QI-DLKDSYAYGDSISDLPLLS--LVGHP 193 (202)
T ss_pred CEEeCCccCCCCCChHHHHHHHH--------------HHHHc-CC-CHHHcEeeeCCcccHHHHH--hCCCc
Confidence 8887743 232222223221110 01100 01 2357899999999999998 44443
No 20
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.38 E-value=1.1e-12 Score=117.78 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=65.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcE-EecCCCccccCCCCccccccc
Q 016842 182 DGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHL-VSFKGKTIHSLNKNEHALDMA 260 (381)
Q Consensus 182 pG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l-~gf~~~~ih~~nK~~~~l~k~ 260 (381)
|++.++++.++++|++++|+|+|...+|+++++.. ++ +..++++|.+ |+++|.. .+---+..+. +|.....
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~-~i--~~~~v~~~~~-~~~~~~~~~~~~~~~~~~-~K~~~l~--- 163 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERL-GI--DDDNVIGNEL-FDNGGGIFTGRITGSNCG-GKAEALK--- 163 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHT-TS--SEGGEEEEEE-ECTTCCEEEEEEEEEEES-HHHHHHH---
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CC--CceEEEEEee-eecccceeeeeECCCCCC-cHHHHHH---
Confidence 44449999999999999999999999999999865 64 6567999999 8765332 2211001111 2332111
Q ss_pred ccccccCCCCCCCC--cccccCCCCceEEEEcCCCCCccccc
Q 016842 261 APLHEHFGDTDGPN--YDNASVKNRTNVLLLGDHIGDLGMSD 300 (381)
Q Consensus 261 ~~~~~~~g~~~~~~--~~~~~l~~r~nVI~IGDg~~Dl~ma~ 300 (381)
.+ ..... ....+++++|||.+|+.|++
T Consensus 164 ------------~~~~~~~~~-~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 164 ------------ELYIRDEED-IDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp ------------HHHHHHHHT-HTCCEEEEEESSGGGHHHHH
T ss_pred ------------HHHHHhhcC-CCCCeEEEEECCHHHHHHhC
Confidence 01 00000 23578999999999999863
No 21
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.28 E-value=7.7e-11 Score=110.17 Aligned_cols=115 Identities=11% Similarity=0.126 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHHcc------CCcccccHHHHHH-HHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEc
Q 016842 162 GGLTYDAIKKSVSNA------LIAFRDGVVKLFE-FLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFD 234 (381)
Q Consensus 162 ~glt~~~i~e~v~~~------~i~LrpG~~efl~-~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~Fd 234 (381)
.|.+.+++.+..+.. ...+.||+.+.++ .++++|++++|+|++...+++++.+.. +. ...++++++++.++
T Consensus 71 ~g~~~~~l~~~~~~f~~~~~~~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~-~~-~~~~~~i~t~le~~ 148 (210)
T TIGR01545 71 FGHREAHLQDLEADFVAAFRDKVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS-NF-IHRLNLIASQIERG 148 (210)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc-cc-cccCcEEEEEeEEe
Confidence 467776665533221 2468999999995 899999999999999999999999774 22 12358999999986
Q ss_pred CCCcEEecCCCccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCccccc
Q 016842 235 KDGHLVSFKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSD 300 (381)
Q Consensus 235 edG~l~gf~~~~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~ 300 (381)
+.|.+. ++..+.-.|-.. +.+.+| .......+-|||.+|+.|..
T Consensus 149 ~gg~~~---g~~c~g~~Kv~r-------l~~~~~------------~~~~~~~aYsDS~~D~pmL~ 192 (210)
T TIGR01545 149 NGGWVL---PLRCLGHEKVAQ-------LEQKIG------------SPLKLYSGYSDSKQDNPLLA 192 (210)
T ss_pred CCceEc---CccCCChHHHHH-------HHHHhC------------CChhheEEecCCcccHHHHH
Confidence 445543 332232222211 111111 12345678999999999987
No 22
>PRK11590 hypothetical protein; Provisional
Probab=99.22 E-value=1.7e-10 Score=107.30 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=71.9
Q ss_pred CcccccHHHHH-HHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccc
Q 016842 178 IAFRDGVVKLF-EFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHA 256 (381)
Q Consensus 178 i~LrpG~~efl-~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~ 256 (381)
+.+.||+.+.+ +.+++.|++++|+|++...+++++++.. +. ....+++++++.+.-.|++.| +..+...|-..
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l-~~-~~~~~~i~t~l~~~~tg~~~g---~~c~g~~K~~~- 167 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDT-PW-LPRVNLIASQMQRRYGGWVLT---LRCLGHEKVAQ- 167 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHc-cc-cccCceEEEEEEEEEccEECC---ccCCChHHHHH-
Confidence 56799999999 6799999999999999999999999986 42 123479999998854565533 33332222211
Q ss_pred ccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceee
Q 016842 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRIS 309 (381)
Q Consensus 257 l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~a 309 (381)
+.+.+| .......+-|||.+|+.|.. -+++-++
T Consensus 168 ------l~~~~~------------~~~~~~~aY~Ds~~D~pmL~--~a~~~~~ 200 (211)
T PRK11590 168 ------LERKIG------------TPLRLYSGYSDSKQDNPLLY--FCQHRWR 200 (211)
T ss_pred ------HHHHhC------------CCcceEEEecCCcccHHHHH--hCCCCEE
Confidence 111111 01235578999999999987 3444333
No 23
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.96 E-value=4.1e-09 Score=97.35 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=38.5
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+.+.||+.+++++|+++|++++|+|++....++.+|+.. |.
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~-gl 121 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLT-GL 121 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CC
Confidence 4678999999999999999999999999999999999876 54
No 24
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.94 E-value=8.3e-09 Score=95.45 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=38.7
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
...+.||+.+++++|+++|++++|+|++....++.+|++. +.
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~-~l 126 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKL-GW 126 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHh-hh
Confidence 4689999999999999999999999999999999999976 53
No 25
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.92 E-value=9.9e-09 Score=94.03 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=38.5
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
...+.||+.++++.|+++|++++|+|++....++.+|++. +.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l 124 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELL-GL 124 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-Cc
Confidence 4689999999999999999999999999999999999986 53
No 26
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.92 E-value=1.9e-08 Score=92.93 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=38.3
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
...+.||+.++++.|+++|++++|+|++....++.++++. +.
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l 132 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEAL-GI 132 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CC
Confidence 4689999999999999999999999999999999999876 53
No 27
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.89 E-value=9.2e-09 Score=94.38 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=38.9
Q ss_pred cCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
..+.+.||+.+++++|+++|++++|+|++....++..+++. +.
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~-~l 114 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEAL-GL 114 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHc-CC
Confidence 35889999999999999999999999999999999998876 54
No 28
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.87 E-value=1.5e-08 Score=94.19 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=38.6
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
...+.||+.+++++|+++|++++|+|++....++.+++.. ++
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l 131 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF-DL 131 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC-cc
Confidence 4789999999999999999999999999999999999976 53
No 29
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.87 E-value=1.2e-08 Score=95.52 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=38.5
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
..+-||+.+.++.|+++|+++.|+|+.....++.+|+++ |.
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~-gl 128 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKAL-GL 128 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHh-CC
Confidence 579999999999999999999999999999999999986 64
No 30
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=98.87 E-value=1.3e-08 Score=91.14 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=35.6
Q ss_pred cCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
..+.+.||+.+++++|+++|++++|+|++ ..++.+|++. +.
T Consensus 85 ~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~-~l 125 (185)
T TIGR02009 85 TGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL-GL 125 (185)
T ss_pred cCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc-Ch
Confidence 35789999999999999999999999998 5678888875 53
No 31
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.86 E-value=3.4e-09 Score=87.88 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=37.9
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
...+.||+.++++.|+++|++++|+|++....++.++++.
T Consensus 22 ~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~ 61 (139)
T cd01427 22 ELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL 61 (139)
T ss_pred cCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc
Confidence 5789999999999999999999999999999999999986
No 32
>PRK11587 putative phosphatase; Provisional
Probab=98.85 E-value=2e-08 Score=93.41 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=35.6
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
.+.+.||+.++|++|+++|++++|+|++....++..++..
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~ 120 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA 120 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhc
Confidence 5789999999999999999999999999887777777654
No 33
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.81 E-value=2.4e-08 Score=96.99 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=38.8
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+.+.||+.++|++|+++|++++|+|++....++.+|++. |.
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~-gl 181 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ-GL 181 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CC
Confidence 4688999999999999999999999999999999999986 54
No 34
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.81 E-value=2.3e-08 Score=103.57 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=39.2
Q ss_pred cCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
...++.||+.++|++|+++|++++|+|++....++..|+.. +.
T Consensus 327 ~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~-~l 369 (459)
T PRK06698 327 GKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYY-DL 369 (459)
T ss_pred cCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHC-Cc
Confidence 35789999999999999999999999999999999999876 53
No 35
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.79 E-value=3.8e-08 Score=94.95 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=39.1
Q ss_pred cCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
....+.||+.++|+.|+++|++++|+|++....++.+|++. |.
T Consensus 106 ~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~-gl 148 (260)
T PLN03243 106 GLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAV-GM 148 (260)
T ss_pred cCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHc-CC
Confidence 35789999999999999999999999999999999999886 53
No 36
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.76 E-value=8.5e-08 Score=90.09 Aligned_cols=42 Identities=19% Similarity=0.042 Sum_probs=38.0
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
...+.||+.+++++|+++|++++|+|++....++.+|++. +.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~-~l 134 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQL-GW 134 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-Cc
Confidence 4789999999999999999999999999999998888876 53
No 37
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=98.75 E-value=4.3e-08 Score=95.67 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=40.0
Q ss_pred HHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 170 KKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 170 ~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
.+.+....+.+.||+.++|++|+++|++++|+|++....++.+|+..
T Consensus 135 ~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~ 181 (286)
T PLN02779 135 KELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTL 181 (286)
T ss_pred HHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Confidence 33333334789999999999999999999999999999999998865
No 38
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.74 E-value=8.5e-08 Score=92.83 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=36.4
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
..+.||+.++++.|+++|++++|+|++....++.+|++.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~ 138 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM 138 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc
Confidence 578999999999999999999999999999999998875
No 39
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.72 E-value=1.4e-07 Score=85.89 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=38.5
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+.+.||+.+++++|+++|++++|+|+|....++..|++. |.
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~-gl 131 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA-GL 131 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC-CC
Confidence 5788999999999999999999999999999999999876 54
No 40
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.70 E-value=5.1e-08 Score=91.68 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=38.1
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+.+.||+.+++++|+++|++++|+|++....++..|++. +.
T Consensus 91 ~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~-~l 132 (224)
T PRK14988 91 RAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT-GL 132 (224)
T ss_pred cCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC-Cc
Confidence 5789999999999999999999999999999999888875 53
No 41
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=98.70 E-value=1.2e-07 Score=86.53 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=32.9
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
..+.||+.+++++|+++|++++|+|++... +...|++.
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~ 141 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEAL 141 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHC
Confidence 468899999999999999999999998765 46777765
No 42
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=98.69 E-value=4.5e-08 Score=87.61 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=30.8
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
..+.||+.++|++|+++|++++|+|++.. ...+|+..
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~ 122 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKL 122 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhc
Confidence 57899999999999999999999998753 34566665
No 43
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.69 E-value=1.2e-07 Score=89.92 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=37.8
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
.+.+.||+.++|++|+++|++++|+|++....++.+|++.
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~ 136 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEA 136 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999886
No 44
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.68 E-value=1.4e-07 Score=89.76 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=39.1
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+.+.||+.++|++|+++|++++|+|++....++..|++. +.
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~-gl 147 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLL-GL 147 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc-CC
Confidence 5889999999999999999999999999999999999986 54
No 45
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.68 E-value=2.2e-07 Score=89.14 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=37.4
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
.+.+.||+.++|++|+++|++++|+|++....++.+|+..
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~ 138 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLA 138 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999876
No 46
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.67 E-value=1.1e-07 Score=86.84 Aligned_cols=40 Identities=8% Similarity=-0.097 Sum_probs=35.3
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+.++..++|+.|+++|++++|+|++....++.+|++. |.
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~-gl 145 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTH-GL 145 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHc-Cc
Confidence 34556699999999999999999999999999999987 64
No 47
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.65 E-value=2.5e-07 Score=85.40 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=37.8
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+.+.||+.+++++|+++|++++|+|++....+...|++. |.
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~-~l 133 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL-GV 133 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC-Ch
Confidence 4789999999999999999999999999988888888876 53
No 48
>PRK09449 dUMP phosphatase; Provisional
Probab=98.61 E-value=2.3e-07 Score=86.00 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=36.4
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
...+.||+.++++.|+ ++++++|+|++....++..|++. |.
T Consensus 93 ~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~-~l 133 (224)
T PRK09449 93 ICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERT-GL 133 (224)
T ss_pred cCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhC-Ch
Confidence 3679999999999999 57999999999999999998876 53
No 49
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.61 E-value=1.8e-07 Score=81.26 Aligned_cols=43 Identities=33% Similarity=0.435 Sum_probs=39.8
Q ss_pred cCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
....+.||+.++++.|+++|++++|+|++....++..|++. |.
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~-~~ 116 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL-GL 116 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT-TH
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCccccccccccc-cc
Confidence 56899999999999999999999999999999999999987 53
No 50
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.57 E-value=4.6e-07 Score=92.10 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=38.8
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
...+.||+.++|++|+++|++++|+|++....++.+|++. |+
T Consensus 214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~l-gL 255 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSI-GI 255 (381)
T ss_pred CCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CC
Confidence 4688999999999999999999999999999999999986 54
No 51
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=98.52 E-value=3e-07 Score=84.56 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=37.4
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+.+.||+.+++++|+++ ++++|+|++....++..|++. +.
T Consensus 95 ~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~-~l 135 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKS-GL 135 (224)
T ss_pred cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHC-Cc
Confidence 468999999999999999 999999999999999999876 54
No 52
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.51 E-value=2.4e-07 Score=80.89 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=36.2
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
.....||+.++++.|+++|++++|+|++....+...++..
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~ 101 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH 101 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH
Confidence 4567799999999999999999999999999999988874
No 53
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.50 E-value=1.2e-06 Score=92.10 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=76.4
Q ss_pred hCCCCHHHHHHHHH----cc-CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcC
Q 016842 161 EGGLTYDAIKKSVS----NA-LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDK 235 (381)
Q Consensus 161 ~~glt~~~i~e~v~----~~-~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~Fde 235 (381)
..|++.+++++..+ +. .-.+++...+. ++++| ..+|+||+.+.++++++++++|. + .|++.++..+.
T Consensus 87 f~G~~~~el~~~~r~~l~~f~~~~l~~~a~~~---~~~~g-~~vvVSASp~~~Vepfa~~~LGi--d--~VIgTeLev~~ 158 (497)
T PLN02177 87 FAGLKIRDIELVSRSVLPKFYAEDVHPETWRV---FNSFG-KRYIITASPRIMVEPFVKTFLGA--D--KVLGTELEVSK 158 (497)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHhcCHHHHHH---HHhCC-CEEEEECCcHHHHHHHHHHcCCC--C--EEEecccEECc
Confidence 35888888865542 10 11256665544 45566 45999999999999999886675 2 69999999977
Q ss_pred CCcEEecC-CC-ccccCCCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeecc
Q 016842 236 DGHLVSFK-GK-TIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGF 312 (381)
Q Consensus 236 dG~l~gf~-~~-~ih~~nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGf 312 (381)
+|+++|.- ++ +.+.-.|-.. +.+.+| .....+..|||.+|+.|.. .++..+.++.
T Consensus 159 ~G~~TG~i~g~~~c~Ge~Kv~r-------l~~~~g-------------~~~~~~aYgDS~sD~plL~--~a~e~y~V~~ 215 (497)
T PLN02177 159 SGRATGFMKKPGVLVGDHKRDA-------VLKEFG-------------DALPDLGLGDRETDHDFMS--ICKEGYMVPR 215 (497)
T ss_pred CCEEeeeecCCCCCccHHHHHH-------HHHHhC-------------CCCceEEEECCccHHHHHH--hCCccEEeCC
Confidence 89999864 32 1111112111 100001 0111279999999999987 5565555555
No 54
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.49 E-value=3.1e-07 Score=84.16 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=39.4
Q ss_pred CHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHH
Q 016842 165 TYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQ 215 (381)
Q Consensus 165 t~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~ 215 (381)
+.+++.+...+....+.||+.++++.|+++|++++|+|++....++..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~ 120 (199)
T PRK09456 70 SYEQFAHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEE 120 (199)
T ss_pred CHHHHHHHHHHHHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhh
Confidence 445555444433357899999999999999999999999998777766554
No 55
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.49 E-value=7.4e-07 Score=85.19 Aligned_cols=41 Identities=7% Similarity=0.154 Sum_probs=34.8
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecC----hHHHHHHHHHHhcCC
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAG----LADIIEEVLRQKVHK 219 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG----~~~~Ie~vL~~~~g~ 219 (381)
..+.+|+.+|+++|+++|++++|+|+. ....++.+++.+ |+
T Consensus 113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~l-Gi 157 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNF-HI 157 (237)
T ss_pred CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHh-CC
Confidence 456667999999999999999999997 677888888766 64
No 56
>PLN02940 riboflavin kinase
Probab=98.47 E-value=2e-07 Score=94.79 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=37.0
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVH 218 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g 218 (381)
.+.+.||+.+++++|+++|++++|+|++....++..|++..+
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~g 132 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQG 132 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccC
Confidence 478899999999999999999999999999998888874324
No 57
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.44 E-value=1.7e-06 Score=80.14 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=34.5
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+.+.||+.++++.| +++++|+|++....++..|+.. +.
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~-~l 124 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKT-GM 124 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhc-Ch
Confidence 578999999999998 4999999999999999999876 53
No 58
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.42 E-value=1.1e-06 Score=78.96 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=34.0
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+.+.|| .++++.|+++ ++++|+|++....++..|++. +.
T Consensus 86 ~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~-~l 125 (188)
T PRK10725 86 SVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHL-GL 125 (188)
T ss_pred cCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhC-Cc
Confidence 4567786 5899999876 899999999999999999986 54
No 59
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.37 E-value=3.1e-06 Score=75.10 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=34.0
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
+.+.||+.++++.|+++|++++|+|++.... ..++.+. |.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~-~l 123 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQEL-GL 123 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhc-CC
Confidence 6899999999999999999999999999887 5555443 53
No 60
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.37 E-value=3.5e-06 Score=75.99 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHc----cCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 163 GLTYDAIKKSVSN----ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 163 glt~~~i~e~v~~----~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
+...+.+.+.+.+ ..+.+.||+.++++.|+ .+++|+|++....+...|++. |.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~-gl 120 (184)
T TIGR01993 64 EIDADEYLRYVHGRLPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRL-GI 120 (184)
T ss_pred CCCHHHHHHHHhccCCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHc-Cc
Confidence 4555655655543 13668899999999997 489999999999999999886 54
No 61
>PRK08238 hypothetical protein; Validated
Probab=98.24 E-value=2.6e-06 Score=89.18 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=64.1
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccc
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHA 256 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~ 256 (381)
.++++||+.++++.++++|++++|+|++...+++.++++. |. ++ .|++.....+ .....|.+.
T Consensus 70 ~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l-Gl-Fd--~Vigsd~~~~------------~kg~~K~~~- 132 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL-GL-FD--GVFASDGTTN------------LKGAAKAAA- 132 (479)
T ss_pred hCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc-CC-CC--EEEeCCCccc------------cCCchHHHH-
Confidence 4678999999999999999999999999999999998876 63 32 4554421100 000112111
Q ss_pred ccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeec
Q 016842 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVG 311 (381)
Q Consensus 257 l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiG 311 (381)
..+.+ . ...++|+||+.+|+.|++ .++..+.++
T Consensus 133 ----------------l~~~l---~-~~~~~yvGDS~~Dlp~~~--~A~~av~Vn 165 (479)
T PRK08238 133 ----------------LVEAF---G-ERGFDYAGNSAADLPVWA--AARRAIVVG 165 (479)
T ss_pred ----------------HHHHh---C-ccCeeEecCCHHHHHHHH--hCCCeEEEC
Confidence 01111 1 234789999999999998 455555544
No 62
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.18 E-value=7.1e-06 Score=75.48 Aligned_cols=32 Identities=6% Similarity=0.150 Sum_probs=28.7
Q ss_pred cCCcccccHHHHHHHHHHCCCCEEEEecChHH
Q 016842 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLAD 207 (381)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~ 207 (381)
..+.+.||+.++++.|+++|++++|+|++...
T Consensus 91 ~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~ 122 (211)
T TIGR02247 91 ENTKLRPSMMAAIKTLRAKGFKTACITNNFPT 122 (211)
T ss_pred cccccChhHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 35789999999999999999999999998653
No 63
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.16 E-value=5.6e-06 Score=94.11 Aligned_cols=40 Identities=13% Similarity=0.060 Sum_probs=36.7
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+.||+.+++++|+++|++++|+|++....++.+|++. +.
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~-gl 200 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAA-GL 200 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHc-CC
Confidence 47899999999999999999999999999999999876 54
No 64
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.09 E-value=1.4e-05 Score=75.14 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=39.6
Q ss_pred cCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
..+++.||+.++++.|+++|++++++|++....++.+|+.. |.
T Consensus 83 ~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~-gl 125 (221)
T COG0637 83 EGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARL-GL 125 (221)
T ss_pred cCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHc-cC
Confidence 45899999999999999999999999999999999999887 53
No 65
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=98.04 E-value=3.9e-05 Score=72.57 Aligned_cols=51 Identities=14% Similarity=0.304 Sum_probs=36.1
Q ss_pred HHHHHhCCCCHHHHH-------HHHHc--cCCcccccHHHHHHHHHHCCCCEEEEecChHH
Q 016842 156 HGLLIEGGLTYDAIK-------KSVSN--ALIAFRDGVVKLFEFLEERDIPVLIFSAGLAD 207 (381)
Q Consensus 156 ~~Ll~~~glt~~~i~-------e~v~~--~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~ 207 (381)
..++...|++.+... +.... ..+.+-||+.++|+.|+++ ++++|+|+|...
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~ 140 (238)
T PRK10748 81 EQAMLDAGLSAEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ 140 (238)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHcC-CCEEEEECCCch
Confidence 345666777754421 11211 2478889999999999986 999999998865
No 66
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.00 E-value=7.4e-06 Score=72.94 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=30.6
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+.+.||+.++|+ +++|+|++....++..+++. +.
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~-~l 122 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQA-GL 122 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHC-CC
Confidence 4789999999998 48999999999999999876 53
No 67
>PLN02811 hydrolase
Probab=97.99 E-value=3.6e-05 Score=71.74 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=30.4
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHH
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEE 211 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~ 211 (381)
...+.||+.++++.|+++|+++.|+|++....+..
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~ 110 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDL 110 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHH
Confidence 47889999999999999999999999998754443
No 68
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.94 E-value=3.8e-05 Score=70.00 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=28.7
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHH
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQ 215 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~ 215 (381)
...+.||+.++|+.|+++ .+++++|++....-...++.
T Consensus 72 ~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~ 109 (197)
T PHA02597 72 YLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQ 109 (197)
T ss_pred hccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhh
Confidence 367899999999999997 58888888766544334443
No 69
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.94 E-value=4.8e-05 Score=72.80 Aligned_cols=41 Identities=7% Similarity=0.102 Sum_probs=34.0
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEec----ChHHHHHHHHHHhcCC
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSA----GLADIIEEVLRQKVHK 219 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~Sa----G~~~~Ie~vL~~~~g~ 219 (381)
..+.||+.+++++|+++|++++++|+ .....++.+++.+ |+
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~-gi 157 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDF-HI 157 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHc-CC
Confidence 57888999999999999999999998 4566777777654 64
No 70
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.89 E-value=2.4e-05 Score=83.35 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=76.9
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l 257 (381)
.++|||+.+++++|+++|++++|+|+.....++.++++. |+ +++++-. ..+|.+
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l-gi-----~~~~~~~-----------------p~~K~~--- 457 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL-GI-----NVRAEVL-----------------PDDKAA--- 457 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc-CC-----cEEccCC-----------------hHHHHH---
Confidence 578999999999999999999999999999999999986 64 2333210 012221
Q ss_pred cccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCc
Q 016842 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTML 337 (381)
Q Consensus 258 ~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t 337 (381)
.++.++ .+..+++|+|||.||..++. .+++-++.|+-. . .-...-|+++.+|.-
T Consensus 458 ---------------~v~~l~--~~~~~v~~VGDg~nD~~al~--~A~vgia~g~g~-~------~a~~~Advvl~~~~l 511 (562)
T TIGR01511 458 ---------------LIKELQ--EKGRVVAMVGDGINDAPALA--QADVGIAIGAGT-D------VAIEAADVVLMRNDL 511 (562)
T ss_pred ---------------HHHHHH--HcCCEEEEEeCCCccHHHHh--hCCEEEEeCCcC-H------HHHhhCCEEEeCCCH
Confidence 111222 13568999999999999998 777777777532 1 124458999987643
No 71
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.78 E-value=2.8e-05 Score=82.34 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=80.1
Q ss_pred CcccccHHHHHHHHHHCCC-CEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccc
Q 016842 178 IAFRDGVVKLFEFLEERDI-PVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHA 256 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gI-pv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~ 256 (381)
-+++||+.+.+++|+++|+ ++.|+|+.....++.++++. |. + +++++-. ..+|..
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l-gi--~--~~f~~~~-----------------p~~K~~-- 416 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL-GI--D--EVHAELL-----------------PEDKLE-- 416 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc-CC--h--hhhhccC-----------------cHHHHH--
Confidence 5789999999999999999 99999999999999999987 64 2 2332211 012221
Q ss_pred ccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCC
Q 016842 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTM 336 (381)
Q Consensus 257 l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~ 336 (381)
.++.++ .....++|+|||.+|+.++. .++..++.|+-..... ....|+++.+|.
T Consensus 417 ----------------~i~~l~--~~~~~v~~vGDg~nD~~al~--~A~vgia~g~~~~~~~------~~~ad~vl~~~~ 470 (536)
T TIGR01512 417 ----------------IVKELR--EKYGPVAMVGDGINDAPALA--AADVGIAMGASGSDVA------IETADVVLLNDD 470 (536)
T ss_pred ----------------HHHHHH--hcCCEEEEEeCCHHHHHHHH--hCCEEEEeCCCccHHH------HHhCCEEEECCC
Confidence 112222 12468999999999999999 7787788876332222 346799998765
Q ss_pred chHHH
Q 016842 337 LALLV 341 (381)
Q Consensus 337 t~~~~ 341 (381)
--.++
T Consensus 471 l~~l~ 475 (536)
T TIGR01512 471 LSRLP 475 (536)
T ss_pred HHHHH
Confidence 55544
No 72
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=97.74 E-value=1.6e-05 Score=72.17 Aligned_cols=87 Identities=18% Similarity=0.178 Sum_probs=60.0
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l 257 (381)
.+++||+.++++.|++.|+++.|+|+........+.++. |+ +...|+++.. | -+. .|. ..
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l-gi--~~~~v~a~~~-----~----kP~------~k~--~~ 185 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL-GI--FDSIVFARVI-----G----KPE------PKI--FL 185 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT-TS--CSEEEEESHE-----T----TTH------HHH--HH
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccccccccccccc-cc--cccccccccc-----c----ccc------chh--HH
Confidence 578999999999999999999999999999999998876 75 2223555433 0 010 010 00
Q ss_pred cccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCccccc
Q 016842 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSD 300 (381)
Q Consensus 258 ~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~ 300 (381)
. .++.++ . +...|+++|||.||+.|++
T Consensus 186 ~--------------~i~~l~-~-~~~~v~~vGDg~nD~~al~ 212 (215)
T PF00702_consen 186 R--------------IIKELQ-V-KPGEVAMVGDGVNDAPALK 212 (215)
T ss_dssp H--------------HHHHHT-C-TGGGEEEEESSGGHHHHHH
T ss_pred H--------------HHHHHh-c-CCCEEEEEccCHHHHHHHH
Confidence 0 111111 1 3458999999999999986
No 73
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.72 E-value=0.0003 Score=68.46 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=36.9
Q ss_pred HHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHH---HHHHHHHHhcCC
Q 016842 171 KSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLAD---IIEEVLRQKVHK 219 (381)
Q Consensus 171 e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~---~Ie~vL~~~~g~ 219 (381)
+++......+.||+.+|+++|+++|++++|+|+.... .....|+++ |+
T Consensus 110 ~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~-Gi 160 (266)
T TIGR01533 110 KWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRF-GF 160 (266)
T ss_pred HHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHc-Cc
Confidence 3344456789999999999999999999999997643 344666665 54
No 74
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.65 E-value=0.00018 Score=68.13 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=35.7
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
...+.||+.++|+.|+++|++++|+|+|.......++++.
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~ 132 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHS 132 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhc
Confidence 3579999999999999999999999999988888877764
No 75
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00013 Score=79.86 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=87.7
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l 257 (381)
-++||..++.++.|++.|++++++|+=.....+.+-++. |+ + +++++-+- -+|-+
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~l-GI--d--~v~AellP-----------------edK~~--- 590 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKEL-GI--D--EVRAELLP-----------------EDKAE--- 590 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-Ch--H--hheccCCc-----------------HHHHH---
Confidence 478999999999999999999999999999999998775 75 2 45554322 11221
Q ss_pred cccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCc
Q 016842 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTML 337 (381)
Q Consensus 258 ~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t 337 (381)
.++.++ ..+..|.++|||+||..+.. .+|+-+++|--. .+- .+.-|||+++|.-
T Consensus 591 ---------------~V~~l~--~~g~~VamVGDGINDAPALA--~AdVGiAmG~Gt-DvA------~eaADvvL~~~dL 644 (713)
T COG2217 591 ---------------IVRELQ--AEGRKVAMVGDGINDAPALA--AADVGIAMGSGT-DVA------IEAADVVLMRDDL 644 (713)
T ss_pred ---------------HHHHHH--hcCCEEEEEeCCchhHHHHh--hcCeeEeecCCc-HHH------HHhCCEEEecCCH
Confidence 222233 24578999999999999987 789999999843 333 6788999999987
Q ss_pred hHHHHHh
Q 016842 338 ALLVYRR 344 (381)
Q Consensus 338 ~~~~~~~ 344 (381)
..+|..+
T Consensus 645 ~~v~~ai 651 (713)
T COG2217 645 SAVPEAI 651 (713)
T ss_pred HHHHHHH
Confidence 7776654
No 76
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.53 E-value=0.00014 Score=77.28 Aligned_cols=113 Identities=18% Similarity=0.153 Sum_probs=77.3
Q ss_pred CcccccHHHHHHHHHHCC-CCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccc
Q 016842 178 IAFRDGVVKLFEFLEERD-IPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHA 256 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~g-Ipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~ 256 (381)
-+++||+.+.+++|+++| +++.|+|+.....++.++++. |. + ++|++- ...+|..
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l-gi--~--~~f~~~-----------------~p~~K~~-- 438 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL-GI--D--EVHAEL-----------------LPEDKLA-- 438 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh-CC--C--eeeccC-----------------CHHHHHH--
Confidence 579999999999999999 999999999999999999987 64 1 333321 0012221
Q ss_pred ccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCC
Q 016842 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTM 336 (381)
Q Consensus 257 l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~ 336 (381)
.++.++. ...+++|+|||.+|+.++. .++.-++.|.- .... ...-|+++.+|.
T Consensus 439 ----------------~v~~l~~--~~~~v~~vGDg~nD~~al~--~A~vgia~g~~-~~~~------~~~Ad~vi~~~~ 491 (556)
T TIGR01525 439 ----------------IVKELQE--EGGVVAMVGDGINDAPALA--AADVGIAMGAG-SDVA------IEAADIVLLNDD 491 (556)
T ss_pred ----------------HHHHHHH--cCCEEEEEECChhHHHHHh--hCCEeEEeCCC-CHHH------HHhCCEEEeCCC
Confidence 1112221 2458999999999999998 67766666621 1111 246898888765
Q ss_pred chHHH
Q 016842 337 LALLV 341 (381)
Q Consensus 337 t~~~~ 341 (381)
--.++
T Consensus 492 ~~~l~ 496 (556)
T TIGR01525 492 LSSLP 496 (556)
T ss_pred HHHHH
Confidence 44443
No 77
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=97.48 E-value=0.00055 Score=71.64 Aligned_cols=139 Identities=12% Similarity=0.181 Sum_probs=82.3
Q ss_pred cCCCceEEEEeCCccccccccCCCccccHHHHHhc---cChhHHHHHHHHHHhhCCCCCCCC--CCHHHHHHHHHHHHHH
Q 016842 80 AGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQ---GNPEYDAKRQALYEYYHPLEFSPT--VPLEEKTKLMEEWWGK 154 (381)
Q Consensus 80 ~g~~klqVi~DFDgTIT~~~~~g~~~dts~~il~~---~~~e~~~~~~~L~~~Y~piE~d~~--is~eEk~~~M~Ew~~~ 154 (381)
.|..+--|++|||||||+ ..+++-.+-. .+.....-+ .|.-.| |.-.--. -+-+.+++.|.-
T Consensus 4 ~~~~~~~~~fD~DGTLlr-------s~ssFpyFmlva~eagG~~R~~-~LL~l~-P~l~ll~~~~~~~~~lK~mi~---- 70 (498)
T PLN02499 4 SGTTSYSVVSELEGTLLK-------DADPFSYFMLVAFEASGLIRFA-LLLFLW-PIIRLLDMLGMGDAALKLMIF---- 70 (498)
T ss_pred CCcccceEEEecccceec-------CCCccHHHHHHHHHhccHHHHH-HHHHHh-HHHHHHHhcCCchHHHHHHHH----
Confidence 456666799999999999 2333333332 111111211 111111 2110000 012344444322
Q ss_pred HHHHHHhCCCCHHHHHHHHHcc--C---CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEee
Q 016842 155 THGLLIEGGLTYDAIKKSVSNA--L---IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSN 229 (381)
Q Consensus 155 ~~~Ll~~~glt~~~i~e~v~~~--~---i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN 229 (381)
....|++.+++++..+.- + --+++. .++..++.| .++|+|+..+.++|+.++.++|. + .|+..
T Consensus 71 ----v~f~Gl~~~die~vaRavlpkf~~~dv~~e---~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~--D--~VvGT 138 (498)
T PLN02499 71 ----VATAGVHESEIESVARAVLPKFYMDDVDME---AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRA--D--EVIGS 138 (498)
T ss_pred ----HHhCCCCHHHHHHHHHHHhhHHHHhhCCHH---HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCC--c--eEEee
Confidence 234789999887755431 0 012222 455667778 99999999999999999998785 2 68899
Q ss_pred eeEEcCCCcEEecC
Q 016842 230 RMVFDKDGHLVSFK 243 (381)
Q Consensus 230 ~m~FdedG~l~gf~ 243 (381)
++.++..|+.+|+-
T Consensus 139 EL~v~~~G~~TG~~ 152 (498)
T PLN02499 139 ELVVNRFGFATGFI 152 (498)
T ss_pred eEEEeeccEEEEEE
Confidence 99998559989864
No 78
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=97.42 E-value=0.00024 Score=77.28 Aligned_cols=112 Identities=12% Similarity=0.133 Sum_probs=78.9
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccccc
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALD 258 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l~ 258 (381)
++|||+++.++.|++.|+++.++|+........+-++. |+ + +++++- .+-+|.+
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~l-GI--~--~v~a~~-----------------~PedK~~---- 499 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEA-GV--D--DFIAEA-----------------TPEDKIA---- 499 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CC--C--EEEcCC-----------------CHHHHHH----
Confidence 89999999999999999999999999999999988876 75 2 343321 0011221
Q ss_pred ccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCch
Q 016842 259 MAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTMLA 338 (381)
Q Consensus 259 k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t~ 338 (381)
.++.++ +.+..|.++|||.||..+.. .+|+-++.|--.+-. ++.-|||+.+|.=-
T Consensus 500 --------------~v~~lq--~~g~~VamvGDG~NDapAL~--~AdvGiAm~~gt~~a-------keaadivLldd~~s 554 (675)
T TIGR01497 500 --------------LIRQEQ--AEGKLVAMTGDGTNDAPALA--QADVGVAMNSGTQAA-------KEAANMVDLDSDPT 554 (675)
T ss_pred --------------HHHHHH--HcCCeEEEECCCcchHHHHH--hCCEeEEeCCCCHHH-------HHhCCEEECCCCHH
Confidence 122222 23457999999999999988 778888876322221 45569999987644
Q ss_pred HHH
Q 016842 339 LLV 341 (381)
Q Consensus 339 ~~~ 341 (381)
.++
T Consensus 555 ~Iv 557 (675)
T TIGR01497 555 KLI 557 (675)
T ss_pred HHH
Confidence 443
No 79
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=97.41 E-value=0.00047 Score=60.76 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=36.2
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
.+.++||+.|||++|+ ++++++|+|++...+++.+|++.
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l 81 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLL 81 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHh
Confidence 5789999999999999 57999999999999999999876
No 80
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.40 E-value=0.00027 Score=79.29 Aligned_cols=139 Identities=16% Similarity=0.186 Sum_probs=82.1
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCc-EEecCC-CccccCCCCccc
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGH-LVSFKG-KTIHSLNKNEHA 256 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~-l~gf~~-~~ih~~nK~~~~ 256 (381)
++|||+++.++.|++.|+++.++|+-.......+.++. |....+-.+++ |. +...++ .......+. .+
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~-Gi~~~~~~~v~--------g~~l~~~~~~~l~~~~~~~-~V 597 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRL-GMPSKTSQSVS--------GEKLDAMDDQQLSQIVPKV-AV 597 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCCCCCceeE--------hHHhHhCCHHHHHHHhhcC-eE
Confidence 78999999999999999999999999998888888876 75321112211 11 000000 000000000 00
Q ss_pred ccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCC
Q 016842 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTM 336 (381)
Q Consensus 257 l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~ 336 (381)
.....|-+ +...++.+++ .+..|.++|||.||..|.+ .+|+.++.|.-...+. ++.-|+|+.+|.
T Consensus 598 far~~P~~-----K~~iv~~lq~--~g~~v~mvGDGvND~pAl~--~AdVGia~g~~g~~va------~~aaDivl~dd~ 662 (884)
T TIGR01522 598 FARASPEH-----KMKIVKALQK--RGDVVAMTGDGVNDAPALK--LADIGVAMGQTGTDVA------KEAADMILTDDD 662 (884)
T ss_pred EEECCHHH-----HHHHHHHHHH--CCCEEEEECCCcccHHHHH--hCCeeEecCCCcCHHH------HHhcCEEEcCCC
Confidence 00000000 0012222221 3568999999999999999 7888778775333333 467799999886
Q ss_pred chHHHH
Q 016842 337 LALLVY 342 (381)
Q Consensus 337 t~~~~~ 342 (381)
--.++.
T Consensus 663 ~~~i~~ 668 (884)
T TIGR01522 663 FATILS 668 (884)
T ss_pred HHHHHH
Confidence 555443
No 81
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.39 E-value=0.00032 Score=66.62 Aligned_cols=71 Identities=13% Similarity=0.190 Sum_probs=59.3
Q ss_pred HHhCCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEc
Q 016842 159 LIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFD 234 (381)
Q Consensus 159 l~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~Fd 234 (381)
|..+|+|.+++.++-+. ...|.||+.+.++.|.++ ++-+|+|-++..+++..-.. +|+ |.-++++-.|.+|
T Consensus 64 L~ahGVt~~dlrr~sE~-sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~-ig~--Prg~~~~Te~~lD 134 (315)
T COG4030 64 LAAHGVTNRDLRRISEL-SAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASM-IGV--PRGELHGTEVDLD 134 (315)
T ss_pred HHHhcCcHHHHHHHHHh-hcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHh-cCC--CccccccccccCc
Confidence 45679999999998764 589999999999999887 57778999999999988664 464 6668889999988
No 82
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=97.34 E-value=0.00049 Score=75.06 Aligned_cols=112 Identities=12% Similarity=0.113 Sum_probs=79.7
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccccc
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALD 258 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l~ 258 (381)
++|||+++.++.|++.||++.++|+-.......+-++. |+ + +++|+-. +-+|-+
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~el-GI--d--~v~A~~~-----------------PedK~~---- 498 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEA-GV--D--DFLAEAT-----------------PEDKLA---- 498 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CC--c--EEEccCC-----------------HHHHHH----
Confidence 57999999999999999999999999998888887775 75 2 2332210 011221
Q ss_pred ccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCch
Q 016842 259 MAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTMLA 338 (381)
Q Consensus 259 k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t~ 338 (381)
.++.++ +.+..|.++|||.||..+.. .+|+-++.|-- -.+- +++-|||+.+|.--
T Consensus 499 --------------iV~~lQ--~~G~~VaMtGDGvNDAPALa--~ADVGIAMgsG-TdvA------keAADiVLldd~~s 553 (679)
T PRK01122 499 --------------LIRQEQ--AEGRLVAMTGDGTNDAPALA--QADVGVAMNSG-TQAA------KEAGNMVDLDSNPT 553 (679)
T ss_pred --------------HHHHHH--HcCCeEEEECCCcchHHHHH--hCCEeEEeCCC-CHHH------HHhCCEEEeCCCHH
Confidence 222233 23567999999999999988 78998998832 2232 67889999987644
Q ss_pred HHH
Q 016842 339 LLV 341 (381)
Q Consensus 339 ~~~ 341 (381)
.++
T Consensus 554 ~Iv 556 (679)
T PRK01122 554 KLI 556 (679)
T ss_pred HHH
Confidence 433
No 83
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=97.28 E-value=0.00067 Score=74.89 Aligned_cols=135 Identities=17% Similarity=0.104 Sum_probs=82.4
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcE-EecCC----Cccc---cC
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHL-VSFKG----KTIH---SL 250 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l-~gf~~----~~ih---~~ 250 (381)
++||++++.++.|++.||++.++|+-.......+-++. |+.. .+++..-. . +|.- ...++ +.+. .+
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l-GI~~---~~~~~~~l-~-~~~~~~~~~~~~~~~~~~~~~vf 515 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRL-GLGT---NIYTADVL-L-KGDNRDDLPSGELGEMVEDADGF 515 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCC---CCcCHHHh-c-CCcchhhCCHHHHHHHHHhCCEE
Confidence 89999999999999999999999999998888887775 7522 12221100 0 0100 00000 0000 00
Q ss_pred CCCcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCE
Q 016842 251 NKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDI 330 (381)
Q Consensus 251 nK~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDI 330 (381)
... ...+| ...++.++ +.+..|.++|||.||..+.+ .+|+-++.|-- ..+ -+++-||
T Consensus 516 Ar~-~Pe~K-----------~~iV~~lq--~~G~~VamvGDGvNDapAL~--~AdVGIAm~~g-tdv------AkeaADi 572 (755)
T TIGR01647 516 AEV-FPEHK-----------YEIVEILQ--KRGHLVGMTGDGVNDAPALK--KADVGIAVAGA-TDA------ARSAADI 572 (755)
T ss_pred Eec-CHHHH-----------HHHHHHHH--hcCCEEEEEcCCcccHHHHH--hCCeeEEecCC-cHH------HHHhCCE
Confidence 000 00011 01233333 24568999999999999988 78888887742 222 2678999
Q ss_pred EEecCCchHHHH
Q 016842 331 VYLPTMLALLVY 342 (381)
Q Consensus 331 Vlv~D~t~~~~~ 342 (381)
|+.+|.=-.++.
T Consensus 573 vLl~d~l~~I~~ 584 (755)
T TIGR01647 573 VLTEPGLSVIVD 584 (755)
T ss_pred EEEcCChHHHHH
Confidence 999987554443
No 84
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.28 E-value=0.00042 Score=77.23 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=81.8
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccccc
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALD 258 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l~ 258 (381)
++|||+.+.++.|++.|++++++|+......+.++++. |+ + +++++-. .-.|.+.
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~l-gi--~--~~~~~~~-----------------p~~K~~~--- 704 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEA-GI--D--EVIAGVL-----------------PDGKAEA--- 704 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-CC--C--EEEeCCC-----------------HHHHHHH---
Confidence 67999999999999999999999999999999998876 64 2 3443211 0123221
Q ss_pred ccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCch
Q 016842 259 MAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTMLA 338 (381)
Q Consensus 259 k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t~ 338 (381)
++.++ ....+++++|||.||..|+. .++..++.|.-.+.. ++..|+++..|.--
T Consensus 705 ---------------i~~l~--~~~~~v~~vGDg~nD~~al~--~Agvgia~g~g~~~a-------~~~ad~vl~~~~~~ 758 (834)
T PRK10671 705 ---------------IKRLQ--SQGRQVAMVGDGINDAPALA--QADVGIAMGGGSDVA-------IETAAITLMRHSLM 758 (834)
T ss_pred ---------------HHHHh--hcCCEEEEEeCCHHHHHHHH--hCCeeEEecCCCHHH-------HHhCCEEEecCCHH
Confidence 11222 12458999999999999998 778888888643222 46789999887766
Q ss_pred HHHHHh
Q 016842 339 LLVYRR 344 (381)
Q Consensus 339 ~~~~~~ 344 (381)
.++..+
T Consensus 759 ~i~~~i 764 (834)
T PRK10671 759 GVADAL 764 (834)
T ss_pred HHHHHH
Confidence 555544
No 85
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=97.27 E-value=0.0028 Score=60.18 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=36.0
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
...+.||+..|+..|+.+|+|++++|+.....++..++.+
T Consensus 90 ~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~ 129 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRH 129 (222)
T ss_pred ccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHh
Confidence 5799999999999999999999999999887777777766
No 86
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.27 E-value=0.00039 Score=76.60 Aligned_cols=111 Identities=13% Similarity=0.072 Sum_probs=78.7
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l 257 (381)
-++|||+++.++.|++.|++++++|+-.....+.+.++. |+ ..+++- -.-+|..
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~l-gi-----~~~~~~-----------------~p~~K~~--- 620 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGEL-GI-----DFRAGL-----------------LPEDKVK--- 620 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CC-----CeecCC-----------------CHHHHHH---
Confidence 389999999999999999999999999999999998876 64 222210 0012322
Q ss_pred cccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCc
Q 016842 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTML 337 (381)
Q Consensus 258 ~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t 337 (381)
.++.++ ...+|+|+|||.||..+.. .+|+-++.|.-.+-. .+.-||++..|.-
T Consensus 621 ---------------~v~~l~---~~~~v~mvGDgiNDapAl~--~A~vgia~g~~~~~a-------~~~adivl~~~~l 673 (741)
T PRK11033 621 ---------------AVTELN---QHAPLAMVGDGINDAPAMK--AASIGIAMGSGTDVA-------LETADAALTHNRL 673 (741)
T ss_pred ---------------HHHHHh---cCCCEEEEECCHHhHHHHH--hCCeeEEecCCCHHH-------HHhCCEEEecCCH
Confidence 122222 2358999999999999988 778778877543222 3446999998865
Q ss_pred hHHH
Q 016842 338 ALLV 341 (381)
Q Consensus 338 ~~~~ 341 (381)
..++
T Consensus 674 ~~l~ 677 (741)
T PRK11033 674 RGLA 677 (741)
T ss_pred HHHH
Confidence 4444
No 87
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.26 E-value=0.00059 Score=76.44 Aligned_cols=140 Identities=17% Similarity=0.144 Sum_probs=83.5
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCC-CccccCCCCccc
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKG-KTIHSLNKNEHA 256 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~-~~ih~~nK~~~~ 256 (381)
-++||++++.++.|++.||.+.++||-.......+-++. |+. + -++++..- ++ ...+ +......+.. +
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~l-GI~-~-~~v~~g~~-l~------~~~~~el~~~~~~~~-v 582 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEV-GID-A-NDFLLGAD-IE------ELSDEELARELRKYH-I 582 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCC-C-CCeeecHh-hh------hCCHHHHHHHhhhCe-E
Confidence 378999999999999999999999998888887777765 752 1 12332210 00 0000 0000000000 0
Q ss_pred ccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCC
Q 016842 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTM 336 (381)
Q Consensus 257 l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~ 336 (381)
...+.|-+ +...++.++ +.+..|.++|||.||..+.+ .+|+-++.|-- ..+- +++-|||+.+|.
T Consensus 583 fAr~~Pe~-----K~~iV~~lq--~~G~vVam~GDGvNDapALk--~AdVGIAmg~g-tdvA------k~aADiVLldd~ 646 (867)
T TIGR01524 583 FARLTPMQ-----KSRIIGLLK--KAGHTVGFLGDGINDAPALR--KADVGISVDTA-ADIA------KEASDIILLEKS 646 (867)
T ss_pred EEECCHHH-----HHHHHHHHH--hCCCEEEEECCCcccHHHHH--hCCEEEEeCCc-cHHH------HHhCCEEEecCC
Confidence 00000000 001232232 23567999999999999998 88998998832 3333 678999999987
Q ss_pred chHHHHHh
Q 016842 337 LALLVYRR 344 (381)
Q Consensus 337 t~~~~~~~ 344 (381)
=-.++..+
T Consensus 647 ~~~I~~ai 654 (867)
T TIGR01524 647 LMVLEEGV 654 (867)
T ss_pred hHHHHHHH
Confidence 65555443
No 88
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=97.24 E-value=0.00099 Score=59.84 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=36.8
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
-+.+|||+.|||++|.++ ++++|+|+|...+++.+++..
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~l 78 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDIL 78 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHH
Confidence 478999999999999988 999999999999999999976
No 89
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=97.23 E-value=0.00082 Score=75.61 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=84.8
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCC-CccccCCCCccc
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKG-KTIHSLNKNEHA 256 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~-~~ih~~nK~~~~ 256 (381)
-++||++++.++.|++.||.+.++||-.......+-++. |+. +-++++..- + ...++ +......+. .+
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l-GI~--~~~v~~G~e-l------~~l~~~el~~~~~~~-~V 617 (902)
T PRK10517 549 DPPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEV-GLD--AGEVLIGSD-I------ETLSDDELANLAERT-TL 617 (902)
T ss_pred CcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCC--ccCceeHHH-H------HhCCHHHHHHHHhhC-cE
Confidence 378999999999999999999999998888888887765 752 112322110 0 00000 000000000 00
Q ss_pred ccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCC
Q 016842 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTM 336 (381)
Q Consensus 257 l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~ 336 (381)
...+.|-+ +...++.++ +.+..|.++|||.||..+.+ .+|+-++.|-- ..+- +++-|||+.+|.
T Consensus 618 fAr~sPe~-----K~~IV~~Lq--~~G~vVam~GDGvNDaPALk--~ADVGIAmg~g-tdvA------keaADiVLldd~ 681 (902)
T PRK10517 618 FARLTPMH-----KERIVTLLK--REGHVVGFMGDGINDAPALR--AADIGISVDGA-VDIA------REAADIILLEKS 681 (902)
T ss_pred EEEcCHHH-----HHHHHHHHH--HCCCEEEEECCCcchHHHHH--hCCEEEEeCCc-CHHH------HHhCCEEEecCC
Confidence 00000000 001233333 23567999999999999998 88999998843 2333 688999999987
Q ss_pred chHHHHHh
Q 016842 337 LALLVYRR 344 (381)
Q Consensus 337 t~~~~~~~ 344 (381)
=..++..+
T Consensus 682 ~~~I~~ai 689 (902)
T PRK10517 682 LMVLEEGV 689 (902)
T ss_pred hHHHHHHH
Confidence 66665443
No 90
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=97.23 E-value=0.00064 Score=74.06 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=81.1
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccccc
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALD 258 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l~ 258 (381)
++|||+++.++.|++.||++.++|+-.......+-++. |+ . +++++- .+-+|-+
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~el-GI--~--~v~A~~-----------------~PedK~~---- 494 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEA-GV--D--RFVAEC-----------------KPEDKIN---- 494 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CC--c--eEEcCC-----------------CHHHHHH----
Confidence 79999999999999999999999999888888887775 75 2 233221 0011221
Q ss_pred ccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCch
Q 016842 259 MAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTMLA 338 (381)
Q Consensus 259 k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t~ 338 (381)
.++.++ +.+..|.++|||.||..+.. .+|+-++.|--.+ +- +++-|||+.+|.=-
T Consensus 495 --------------iV~~lQ--~~G~~VaMtGDGvNDAPALa--~ADVGIAMgsGTd-vA------keAADiVLldd~ls 549 (673)
T PRK14010 495 --------------VIREEQ--AKGHIVAMTGDGTNDAPALA--EANVGLAMNSGTM-SA------KEAANLIDLDSNPT 549 (673)
T ss_pred --------------HHHHHH--hCCCEEEEECCChhhHHHHH--hCCEEEEeCCCCH-HH------HHhCCEEEcCCCHH
Confidence 222233 23567999999999999988 7899999884432 33 67889999988655
Q ss_pred HHHH
Q 016842 339 LLVY 342 (381)
Q Consensus 339 ~~~~ 342 (381)
.++.
T Consensus 550 ~Iv~ 553 (673)
T PRK14010 550 KLME 553 (673)
T ss_pred HHHH
Confidence 5443
No 91
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=97.20 E-value=0.00053 Score=77.16 Aligned_cols=137 Identities=16% Similarity=0.190 Sum_probs=82.1
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCC-CccccCCCCcccc
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKG-KTIHSLNKNEHAL 257 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~-~~ih~~nK~~~~l 257 (381)
++||++++.++.|++.||.+.++||-.......+-++. |+. ++ .+++-. .+ ....+ .......+. .+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~l-GI~-~~-~vi~G~-el------~~~~~~el~~~v~~~-~Vf 618 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREV-GLE-PG-EPLLGT-EI------EAMDDAALAREVEER-TVF 618 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCC-CC-CccchH-hh------hhCCHHHHHHHhhhC-CEE
Confidence 89999999999999999999999998888888887765 752 11 122110 00 00000 000000000 000
Q ss_pred cccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCc
Q 016842 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTML 337 (381)
Q Consensus 258 ~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t 337 (381)
..+.|-+ +...++.++ +.+..|.++|||.||..+.+ .+|+-++.|- .-.+- +++-|||+.+|.=
T Consensus 619 Ar~sPe~-----K~~iV~~Lq--~~G~vVamtGDGvNDaPALk--~ADVGIAmg~-gtdvA------keaADiVLldd~f 682 (903)
T PRK15122 619 AKLTPLQ-----KSRVLKALQ--ANGHTVGFLGDGINDAPALR--DADVGISVDS-GADIA------KESADIILLEKSL 682 (903)
T ss_pred EEeCHHH-----HHHHHHHHH--hCCCEEEEECCCchhHHHHH--hCCEEEEeCc-ccHHH------HHhcCEEEecCCh
Confidence 0000000 011233333 23567999999999999998 8899899883 23333 6789999999865
Q ss_pred hHHHH
Q 016842 338 ALLVY 342 (381)
Q Consensus 338 ~~~~~ 342 (381)
-.++.
T Consensus 683 ~~Iv~ 687 (903)
T PRK15122 683 MVLEE 687 (903)
T ss_pred HHHHH
Confidence 54444
No 92
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.19 E-value=0.001 Score=65.58 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=41.4
Q ss_pred Cccc-ccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeee
Q 016842 178 IAFR-DGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNR 230 (381)
Q Consensus 178 i~Lr-pG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~ 230 (381)
+.+| ||+.|++++|+++|++++|+|+|....++..|++. |+..--..|++|.
T Consensus 144 v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~l-GLd~YFdvIIs~G 196 (301)
T TIGR01684 144 VRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKV-KLDRYFDIIISGG 196 (301)
T ss_pred cccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc-CCCcccCEEEECC
Confidence 5677 99999999999999999999999999999999986 6521012455554
No 93
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.09 E-value=0.00064 Score=68.76 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=31.2
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEec----ChHHHHHHHHH
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSA----GLADIIEEVLR 214 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~Sa----G~~~~Ie~vL~ 214 (381)
+.+.||+.++|++|+++|++++|+|+ |.+.+++..|.
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~ 69 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFD 69 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHh
Confidence 68999999999999999999999999 55555555543
No 94
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=97.04 E-value=0.00057 Score=76.99 Aligned_cols=140 Identities=15% Similarity=0.122 Sum_probs=78.4
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCc-EEecCCCccccCCCCcccc
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGH-LVSFKGKTIHSLNKNEHAL 257 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~-l~gf~~~~ih~~nK~~~~l 257 (381)
++|||+++.++.|++.||++.++|+-.......+.++. |...++..++... ++ |. +....+.-.........+.
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~-gi~~~~~~v~~~~--~~--g~~l~~~~~~~~~~~~~~~~v~ 611 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRI-GIFSPDEDVTFKS--FT--GREFDEMGPAKQRAACRSAVLF 611 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHc-CCCCCCcccccee--ee--HHHHhhCCHHHHHHhhhcCeEE
Confidence 78999999999999999999999988877888887776 6533322222111 11 10 0000000000000000000
Q ss_pred cccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCc
Q 016842 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTML 337 (381)
Q Consensus 258 ~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t 337 (381)
+.+.|-+ +...++.++ +.+..|.++|||.||..|.+ .+|+-++.|.-.+-. ++.-|+|+.+| +
T Consensus 612 ar~~P~~-----K~~iV~~lq--~~g~~va~iGDG~ND~~alk--~AdVGia~g~g~~~a-------k~aAD~vl~dd-~ 674 (917)
T TIGR01116 612 SRVEPSH-----KSELVELLQ--EQGEIVAMTGDGVNDAPALK--KADIGIAMGSGTEVA-------KEASDMVLADD-N 674 (917)
T ss_pred EecCHHH-----HHHHHHHHH--hcCCeEEEecCCcchHHHHH--hCCeeEECCCCcHHH-------HHhcCeEEccC-C
Confidence 0000000 001222222 23457888999999999998 778878877432221 56789998876 4
Q ss_pred hHH
Q 016842 338 ALL 340 (381)
Q Consensus 338 ~~~ 340 (381)
+..
T Consensus 675 f~~ 677 (917)
T TIGR01116 675 FAT 677 (917)
T ss_pred HHH
Confidence 443
No 95
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.03 E-value=0.00066 Score=61.09 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=34.9
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecC---------------hHHHHHHHHHHhcCC
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAG---------------LADIIEEVLRQKVHK 219 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG---------------~~~~Ie~vL~~~~g~ 219 (381)
+.+-||+.++|++|+++|++++|+|+. ....+..+|++. |.
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~-gl 83 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ-GI 83 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC-CC
Confidence 578999999999999999999999985 356788888876 53
No 96
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.0007 Score=76.28 Aligned_cols=144 Identities=18% Similarity=0.169 Sum_probs=88.2
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcE-EecCC-CccccCCCCcc
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHL-VSFKG-KTIHSLNKNEH 255 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l-~gf~~-~~ih~~nK~~~ 255 (381)
-++||++++.++.|++.||++.++||=...-...+-++. |.... ... -+..+ |.- ....+ +....+.+..
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~-Gi~~~-~~~---~~vi~--G~el~~l~~~el~~~~~~~~- 617 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKEC-GIEAE-AES---ALVID--GAELDALSDEELAELVEELS- 617 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHc-CCCCC-CCc---eeEee--hHHhhhcCHHHHHHHhhhCc-
Confidence 489999999999999999999999988877777776665 64221 110 11211 211 11111 1112121221
Q ss_pred cccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecC
Q 016842 256 ALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPT 335 (381)
Q Consensus 256 ~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D 335 (381)
+.+.++|-| +...++.++ +.++.|.++|||.||..|.+ .||+-++.|-=. -+.=+++-|||+.+|
T Consensus 618 VfARvsP~q-----K~~IV~~lq--~~g~vVamtGDGvNDapALk--~ADVGIamg~~G------tdaak~Aadivl~dd 682 (917)
T COG0474 618 VFARVSPEQ-----KARIVEALQ--KSGHVVAMTGDGVNDAPALK--AADVGIAMGGEG------TDAAKEAADIVLLDD 682 (917)
T ss_pred EEEEcCHHH-----HHHHHHHHH--hCCCEEEEeCCCchhHHHHH--hcCccEEecccH------HHHHHhhcceEeecC
Confidence 333333322 112333333 24678999999999999999 888888777521 122356689999998
Q ss_pred CchHHHHHh
Q 016842 336 MLALLVYRR 344 (381)
Q Consensus 336 ~t~~~~~~~ 344 (381)
.-..+++.+
T Consensus 683 ~~~~i~~av 691 (917)
T COG0474 683 NFATIVLAV 691 (917)
T ss_pred cHHHHHHHH
Confidence 877766654
No 97
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.98 E-value=0.0023 Score=72.41 Aligned_cols=140 Identities=18% Similarity=0.142 Sum_probs=81.9
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCC-CccccCCCCcccc
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKG-KTIHSLNKNEHAL 257 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~-~~ih~~nK~~~~l 257 (381)
++||++++.++.|++.||++.++||-.......+-++. |+..++..+++-. .|++ ... +......+. .+.
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~-GI~~~~~~vi~G~-~~~~------l~~~el~~~i~~~-~Vf 649 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNC-GILTFGGLAMEGK-EFRR------LVYEEMDPILPKL-RVL 649 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc-CCCCCCceEeeHH-Hhhh------CCHHHHHHHhccC-eEE
Confidence 89999999999999999999999988888887877765 7532222222110 0100 000 000000000 011
Q ss_pred cccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCc
Q 016842 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTML 337 (381)
Q Consensus 258 ~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t 337 (381)
..+.|-+ +...++.++ +.+..|.++|||.||..|.+ .||+-++.|--...+ -+++-|||+.+|.=
T Consensus 650 ar~sPe~-----K~~iV~~lq--~~g~vVam~GDGvNDapALk--~AdVGIAmg~~gtdv------Ak~aADivL~dd~f 714 (941)
T TIGR01517 650 ARSSPLD-----KQLLVLMLK--DMGEVVAVTGDGTNDAPALK--LADVGFSMGISGTEV------AKEASDIILLDDNF 714 (941)
T ss_pred EECCHHH-----HHHHHHHHH--HCCCEEEEECCCCchHHHHH--hCCcceecCCCccHH------HHHhCCEEEecCCH
Confidence 0000100 011233333 23568999999999999998 788888877322222 26778999998854
Q ss_pred hHHHH
Q 016842 338 ALLVY 342 (381)
Q Consensus 338 ~~~~~ 342 (381)
-.++.
T Consensus 715 ~~I~~ 719 (941)
T TIGR01517 715 ASIVR 719 (941)
T ss_pred HHHHH
Confidence 44443
No 98
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=96.97 E-value=0.00067 Score=62.05 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=36.7
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecC-hHHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAG-LADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG-~~~~Ie~vL~~~ 216 (381)
.+.+.||+.+++++|+++|++++|+|++ ....++.+|+..
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~ 83 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTF 83 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhC
Confidence 5789999999999999999999999988 888888888875
No 99
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.93 E-value=0.001 Score=60.04 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=26.8
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChH
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~ 206 (381)
+.+.||+.++|++|+++|++++|+|++..
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 57889999999999999999999998874
No 100
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=96.90 E-value=0.0014 Score=55.92 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=35.6
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecCh--------HHHHHHHHHHhcCC
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGL--------ADIIEEVLRQKVHK 219 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~--------~~~Ie~vL~~~~g~ 219 (381)
.+.||+.+++++|+++|++++|+|++. ...++.++++. +.
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~-~l 72 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL-GV 72 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC-CC
Confidence 578999999999999999999999998 77888888876 53
No 101
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.84 E-value=0.0014 Score=57.45 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=25.9
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecCh
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGL 205 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~ 205 (381)
..+.||+.+++++|+++|++++|+|++.
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCC
Confidence 3678999999999999999999999976
No 102
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=96.82 E-value=0.0024 Score=60.67 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeecc
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGF 312 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGf 312 (381)
..+++++|||.||+.|++ .++..++.|.
T Consensus 215 ~~e~i~~GD~~NDi~m~~--~ag~~vamgn 242 (272)
T PRK10530 215 MKNVVAFGDNFNDISMLE--AAGLGVAMGN 242 (272)
T ss_pred HHHeEEeCCChhhHHHHH--hcCceEEecC
Confidence 468999999999999998 5555556553
No 103
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=96.80 E-value=0.0046 Score=55.40 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEecChHHHHH---HHHHH
Q 016842 181 RDGVVKLFEFLEERDIPVLIFSAGLADIIE---EVLRQ 215 (381)
Q Consensus 181 rpG~~efl~~L~~~gIpv~I~SaG~~~~Ie---~vL~~ 215 (381)
.||+.++++.++++|++++++||-....+. ..|++
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 588999999999999999999998876664 66665
No 104
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.73 E-value=0.0015 Score=74.71 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=81.5
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCC------
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNK------ 252 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK------ 252 (381)
++||++++.++.|++.||++.++|+-.......+-++. |+..++. +.+.-...+...+.|-. +...+.
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~-Gi~~~~~--~~~~~~~~~~~vitG~~---l~~l~~~~l~~~ 719 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEV-GIIPPNF--IHDRDEIMDSMVMTGSQ---FDALSDEEVDDL 719 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc-CCCCccc--cccccccccceeeehHH---hhhcCHHHHHHH
Confidence 89999999999999999999999999998888887776 7532221 11100000011122211 110000
Q ss_pred --CcccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCE
Q 016842 253 --NEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDI 330 (381)
Q Consensus 253 --~~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDI 330 (381)
...+.+.+.|-+ +...++.++ +.+..|.++|||.||..|.+ .+|+-++.|.-...+- ++.-||
T Consensus 720 ~~~~~V~ar~sP~~-----K~~iV~~lq--~~g~~Vam~GDGvNDapaLk--~AdVGIAmg~~gt~va------k~aADi 784 (1053)
T TIGR01523 720 KALCLVIARCAPQT-----KVKMIEALH--RRKAFCAMTGDGVNDSPSLK--MANVGIAMGINGSDVA------KDASDI 784 (1053)
T ss_pred hhcCeEEEecCHHH-----HHHHHHHHH--hcCCeeEEeCCCcchHHHHH--hCCccEecCCCccHHH------HHhcCE
Confidence 000111111100 001232232 23567999999999999998 7888888774332222 568899
Q ss_pred EEecCCchH
Q 016842 331 VYLPTMLAL 339 (381)
Q Consensus 331 Vlv~D~t~~ 339 (381)
|+.+|.=-.
T Consensus 785 vl~dd~f~~ 793 (1053)
T TIGR01523 785 VLSDDNFAS 793 (1053)
T ss_pred EEecCCHHH
Confidence 998874333
No 105
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.0055 Score=67.78 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=82.7
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l 257 (381)
-++||++...++.|++.|++++++|+-...-...+-++. |+ . .|||+-+- ..|.+.
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~V-Gi--~--~V~aev~P-----------------~~K~~~-- 777 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQV-GI--D--NVYAEVLP-----------------EQKAEK-- 777 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhh-Cc--c--eEEeccCc-----------------hhhHHH--
Confidence 479999999999999999999999999998898887776 63 2 57766432 113221
Q ss_pred cccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCc
Q 016842 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTML 337 (381)
Q Consensus 258 ~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t 337 (381)
+++++ +++..|.++|||+||-.+.- .+|+-+++|--. .+- .+.-|||+..+.=
T Consensus 778 ----------------Ik~lq--~~~~~VaMVGDGINDaPALA--~AdVGIaig~gs-~vA------ieaADIVLmrn~L 830 (951)
T KOG0207|consen 778 ----------------IKEIQ--KNGGPVAMVGDGINDAPALA--QADVGIAIGAGS-DVA------IEAADIVLMRNDL 830 (951)
T ss_pred ----------------HHHHH--hcCCcEEEEeCCCCccHHHH--hhccceeecccc-HHH------HhhCCEEEEccch
Confidence 22222 23468999999999998866 677777777552 222 5678999999855
Q ss_pred hHHHHH
Q 016842 338 ALLVYR 343 (381)
Q Consensus 338 ~~~~~~ 343 (381)
.++|..
T Consensus 831 ~~v~~a 836 (951)
T KOG0207|consen 831 RDVPFA 836 (951)
T ss_pred hhhHHH
Confidence 555443
No 106
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.57 E-value=0.0038 Score=71.01 Aligned_cols=144 Identities=12% Similarity=0.137 Sum_probs=82.5
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceE---EeeeeE--E-----cCCCcEEecCCCccc
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKI---VSNRMV--F-----DKDGHLVSFKGKTIH 248 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~I---vSN~m~--F-----dedG~l~gf~~~~ih 248 (381)
++||++++.++.|+++||++.++||-...-+..+.++. |...++... +.+.+. . +++..++ ..|+.+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~-gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v-i~G~~l~ 645 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGV-GIISEGNETVEDIAARLNIPVSQVNPRDAKACV-VHGSDLK 645 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCCCCccchhhhhhhccccccccccccccceE-EEhHHhh
Confidence 88999999999999999999999999888888888876 652222110 000000 0 0000010 1111111
Q ss_pred cCCCC---------c-ccccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHH
Q 016842 249 SLNKN---------E-HALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIE 318 (381)
Q Consensus 249 ~~nK~---------~-~~l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~ve 318 (381)
..... . .+.+.+.|-+ +...++.++ +.+..|.++|||.||..|.+ .+|+.++.|.-...+-
T Consensus 646 ~l~~~el~~~~~~~~~~VfaR~sPeq-----K~~IV~~lq--~~g~vv~~~GDG~ND~paLk--~AdVGiamg~~G~~va 716 (997)
T TIGR01106 646 DMTSEQLDEILKYHTEIVFARTSPQQ-----KLIIVEGCQ--RQGAIVAVTGDGVNDSPALK--KADIGVAMGIAGSDVS 716 (997)
T ss_pred hCCHHHHHHHHHhcCCEEEEECCHHH-----HHHHHHHHH--HCCCEEEEECCCcccHHHHh--hCCcceecCCcccHHH
Confidence 11110 0 0111111111 011222232 23467899999999999998 7888888876433332
Q ss_pred hhHhhhhhccCEEEecCCchHH
Q 016842 319 NNLDNYRNAFDIVYLPTMLALL 340 (381)
Q Consensus 319 e~l~~Y~~~fDIVlv~D~t~~~ 340 (381)
+++-|||+.+|. |..
T Consensus 717 ------k~aADivL~dd~-f~~ 731 (997)
T TIGR01106 717 ------KQAADMILLDDN-FAS 731 (997)
T ss_pred ------HHhhceEEecCC-HHH
Confidence 678899999874 443
No 107
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=96.56 E-value=0.0024 Score=56.70 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=29.0
Q ss_pred HHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 187 LFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 187 fl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+++|+++|++++|+|++....++.++++. |.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~-gi 67 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTL-GI 67 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHc-CC
Confidence 789999999999999999999999999886 64
No 108
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.54 E-value=0.014 Score=53.59 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=37.4
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.++..|++.++++.|+++ ++++|+|.|........|++. |.
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~-gl 137 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQL-GL 137 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHc-CC
Confidence 378999999999999999 999999999999999999987 53
No 109
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=96.44 E-value=0.004 Score=57.50 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeeccCchHH
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNI 317 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~v 317 (381)
..+++++||+.||+.|.+ .++..++.|--.+.+
T Consensus 165 ~~~~i~~GD~~NDi~m~~--~ag~~vam~Na~~~~ 197 (225)
T TIGR01482 165 PGETLVCGDSENDIDLFE--VPGFGVAVANAQPEL 197 (225)
T ss_pred HHHEEEECCCHhhHHHHH--hcCceEEcCChhHHH
Confidence 468999999999999998 555556655444333
No 110
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.43 E-value=0.0035 Score=56.60 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=25.8
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecCh
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGL 205 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~ 205 (381)
..+.||+.+++++|+++|++++|+|++.
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 4678999999999999999999999875
No 111
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=96.41 E-value=0.0054 Score=64.32 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=73.6
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccccc
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALD 258 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l~ 258 (381)
++||++.+.+++|++.|+.+.++|+........+-++. |. +++ .....|.+
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~l-gi-------~~~-----------------~~p~~K~~---- 397 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKEL-GI-------FAR-----------------VTPEEKAA---- 397 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-Cc-------eec-----------------cCHHHHHH----
Confidence 89999999999999999999999999988887776654 52 111 01111221
Q ss_pred ccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCch
Q 016842 259 MAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTMLA 338 (381)
Q Consensus 259 k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t~ 338 (381)
.++.++ ..+..+.++|||.||..|.. .+|+.++.| . .+.-||++.+|.-.
T Consensus 398 --------------~v~~l~--~~g~~v~~vGDg~nD~~al~--~Advgia~~--a----------~~~adivl~~~~l~ 447 (499)
T TIGR01494 398 --------------LVEALQ--KKGRVVAMTGDGVNDAPALK--KADVGIAMG--A----------KAAADIVLLDDNLS 447 (499)
T ss_pred --------------HHHHHH--HCCCEEEEECCChhhHHHHH--hCCCccccc--h----------HHhCCeEEecCCHH
Confidence 111122 12468999999999999987 778777776 1 55689999986554
Q ss_pred HHHH
Q 016842 339 LLVY 342 (381)
Q Consensus 339 ~~~~ 342 (381)
.++.
T Consensus 448 ~i~~ 451 (499)
T TIGR01494 448 TIVD 451 (499)
T ss_pred HHHH
Confidence 4443
No 112
>PRK06769 hypothetical protein; Validated
Probab=96.40 E-value=0.0031 Score=56.99 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=26.4
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChH
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~ 206 (381)
+.+.||+.++|++|+++|++++|+|++..
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 46889999999999999999999998764
No 113
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=96.33 E-value=0.004 Score=56.61 Aligned_cols=117 Identities=16% Similarity=0.099 Sum_probs=68.9
Q ss_pred HHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccccccccccccC
Q 016842 188 FEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALDMAAPLHEHF 267 (381)
Q Consensus 188 l~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l~k~~~~~~~~ 267 (381)
+..|+++|++++|+|++....++..++++ +.. +++. +. + .|.+....
T Consensus 43 ~~~L~~~Gi~laIiT~k~~~~~~~~l~~l-gi~----~~f~--------~~----k-------pkp~~~~~--------- 89 (169)
T TIGR02726 43 VIVLQLCGIDVAIITSKKSGAVRHRAEEL-KIK----RFHE--------GI----K-------KKTEPYAQ--------- 89 (169)
T ss_pred HHHHHHCCCEEEEEECCCcHHHHHHHHHC-CCc----EEEe--------cC----C-------CCHHHHHH---------
Confidence 45677899999999999999999999987 641 2221 10 0 12111100
Q ss_pred CCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCchHHHHHhcCc
Q 016842 268 GDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTMLALLVYRRLSP 347 (381)
Q Consensus 268 g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t~~~~~~~l~~ 347 (381)
..+.+ .+ ...+++|+||+.+|+.|+. .+..-++.+--.+.+ +..-|.|......-.++..+++.
T Consensus 90 -----~~~~l-~~-~~~ev~~iGD~~nDi~~~~--~ag~~~am~nA~~~l-------k~~A~~I~~~~~~~g~v~e~~e~ 153 (169)
T TIGR02726 90 -----MLEEM-NI-SDAEVCYVGDDLVDLSMMK--RVGLAVAVGDAVADV-------KEAAAYVTTARGGHGAVREVAEL 153 (169)
T ss_pred -----HHHHc-Cc-CHHHEEEECCCHHHHHHHH--HCCCeEECcCchHHH-------HHhCCEEcCCCCCCCHHHHHHHH
Confidence 01111 11 2468999999999999998 455545543333333 33345555444444455666666
Q ss_pred cccccc
Q 016842 348 PQLQIQ 353 (381)
Q Consensus 348 ~~~~~~ 353 (381)
|+..+.
T Consensus 154 il~~~~ 159 (169)
T TIGR02726 154 ILKAQG 159 (169)
T ss_pred HHHhcC
Confidence 665543
No 114
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.24 E-value=0.0038 Score=56.37 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=32.6
Q ss_pred ccccHHHHHHHHHHCCCCEEEEecChHH------------HHHHHHHHhcCC
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSAGLAD------------IIEEVLRQKVHK 219 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~SaG~~~------------~Ie~vL~~~~g~ 219 (381)
+-||+.++|+.|+++|++++|+|++... .++.+|++. |.
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~-gl 93 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL-KV 93 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc-CC
Confidence 5699999999999999999999987653 577788876 53
No 115
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.20 E-value=0.0072 Score=54.50 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=33.0
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecCh-HHHHHHHHHHh
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGL-ADIIEEVLRQK 216 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~-~~~Ie~vL~~~ 216 (381)
..+.||+.+++++|+++|++++|+|++. ...+..+++..
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~ 81 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL 81 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc
Confidence 4678999999999999999999999998 56777666644
No 116
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.10 E-value=0.012 Score=58.17 Aligned_cols=102 Identities=13% Similarity=0.040 Sum_probs=50.4
Q ss_pred HHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcE--EecCCCcc-c---cCCCCcccccccccc
Q 016842 190 FLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHL--VSFKGKTI-H---SLNKNEHALDMAAPL 263 (381)
Q Consensus 190 ~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l--~gf~~~~i-h---~~nK~~~~l~k~~~~ 263 (381)
.-++..-| ++.+++-... ...+++. |...-.=--|.+-|.|..-|++ +|+-.|+. . .++|..++.-
T Consensus 144 ~~Re~SEp-~~w~~~~~~~-~~~~~~~-g~~~~~GgRf~H~l~~~~~~~~~~~~~~~~~~~~~~~~~dKg~A~~~----- 215 (302)
T PRK12702 144 QKREYSEI-FSYSGDPARL-REAFAQQ-EANLTQHLLRLHQLHFSDLPQWYLTGWMQPTLAAEPNSLPGEQAVQL----- 215 (302)
T ss_pred HhccCCcc-eEecCCHHHH-HHHHHHc-CCeEEecCceEEecccccccccccccccccccccccCCCCHHHHHHH-----
Confidence 33444455 4456655555 6666765 5311000124444555444443 45433332 2 4455543221
Q ss_pred cccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCcccee
Q 016842 264 HEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRI 308 (381)
Q Consensus 264 ~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~ 308 (381)
..+.|++....-.+|.+|||.||+.|..-++.-+|+
T Consensus 216 ---------L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi 251 (302)
T PRK12702 216 ---------LLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVL 251 (302)
T ss_pred ---------HHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEe
Confidence 122233211234899999999999998833333443
No 117
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=95.86 E-value=0.0072 Score=55.14 Aligned_cols=118 Identities=16% Similarity=0.056 Sum_probs=67.4
Q ss_pred HHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccccccccccccc
Q 016842 187 LFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALDMAAPLHEH 266 (381)
Q Consensus 187 fl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l~k~~~~~~~ 266 (381)
-++.|+++|++++|+|+.....+..++++. +. . ++++ |. -+|.+....
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l-gl--~--~~f~--------g~-----------~~k~~~l~~-------- 103 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTL-GI--T--HLYQ--------GQ-----------SNKLIAFSD-------- 103 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHc-CC--c--eeec--------CC-----------CcHHHHHHH--------
Confidence 455667799999999999999999999886 53 1 2332 10 012111110
Q ss_pred CCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCchHHHHHhcC
Q 016842 267 FGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTMLALLVYRRLS 346 (381)
Q Consensus 267 ~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t~~~~~~~l~ 346 (381)
..+.+ .+ ...+++||||+.+|+.|+. .+..-+..+ + -+ +.-....|.|+-.-+.-..+..+.+
T Consensus 104 ------~~~~~-gl-~~~ev~~VGDs~~D~~~a~--~aG~~~~v~--~--~~---~~~~~~a~~v~~~~~g~g~~~el~~ 166 (183)
T PRK09484 104 ------LLEKL-AI-APEQVAYIGDDLIDWPVME--KVGLSVAVA--D--AH---PLLLPRADYVTRIAGGRGAVREVCD 166 (183)
T ss_pred ------HHHHh-CC-CHHHEEEECCCHHHHHHHH--HCCCeEecC--C--hh---HHHHHhCCEEecCCCCCCHHHHHHH
Confidence 11111 11 2458999999999999998 334333322 1 11 1112344777755444456666666
Q ss_pred ccccccc
Q 016842 347 PPQLQIQ 353 (381)
Q Consensus 347 ~~~~~~~ 353 (381)
.|+..+.
T Consensus 167 ~i~~~~~ 173 (183)
T PRK09484 167 LLLLAQG 173 (183)
T ss_pred HHHHhcC
Confidence 6654433
No 118
>PLN02382 probable sucrose-phosphatase
Probab=95.50 E-value=0.14 Score=52.83 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=35.9
Q ss_pred CceEEEEcCCCCCcccccCCCcc-ceeeeccCchHHHhhHhhhhh-ccCEEEecCCchHHHHHhc
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYE-TRISVGFLNDNIENNLDNYRN-AFDIVYLPTMLALLVYRRL 345 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d-~v~aiGfLn~~vee~l~~Y~~-~fDIVlv~D~t~~~~~~~l 345 (381)
..+++.+|||.||+.|.. .++ .-++.|--.+.+.+....+.. .-+++...+..-+-+...|
T Consensus 194 ~~~~iafGDs~NDleMl~--~ag~~gvam~NA~~elk~~a~~~~~~~~~~~~a~~~~~~GI~~al 256 (413)
T PLN02382 194 PVNTLVCGDSGNDAELFS--VPDVYGVMVSNAQEELLQWYAENAKDNPKIIHATERCAAGIIQAI 256 (413)
T ss_pred hhcEEEEeCCHHHHHHHh--cCCCCEEEEcCCcHHHHHHHHhhccCCCcEEEcCCCCccHHHHHH
Confidence 468999999999999987 556 456666555445443332332 2366655443333333333
No 119
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=95.35 E-value=0.025 Score=62.38 Aligned_cols=136 Identities=18% Similarity=0.255 Sum_probs=82.4
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCC---Ccccc-CCCC
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKG---KTIHS-LNKN 253 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~---~~ih~-~nK~ 253 (381)
-++||++++-++.|++.||.+.++++-...-.+.+-++. |+...+.. +++... .|. .|++ .-.+. +.+.
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~i-Gi~~~~ed-~~~~~~---TG~--efD~ls~~~~~~~~~~~ 655 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREI-GIFSEDED-VSSMAL---TGS--EFDDLSDEELDDAVRRV 655 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHh-CCCcCCcc-cccccc---chh--hhhcCCHHHHHHHhhcc
Confidence 478999999999999999999999999988888887775 75222222 333221 111 1221 00000 0000
Q ss_pred cccccccccccccCCCCCCCCcccccCCCC-ceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEE
Q 016842 254 EHALDMAAPLHEHFGDTDGPNYDNASVKNR-TNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVY 332 (381)
Q Consensus 254 ~~~l~k~~~~~~~~g~~~~~~~~~~~l~~r-~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVl 332 (381)
...-.+.|-| +.+.++. ++.+ .-|-+-|||.||..+.+ .+|.-+|-|--.-.|- +++-|+||
T Consensus 656 -~vFaR~~P~H-----K~kIVea---Lq~~geivAMTGDGVNDApALK--~AdIGIAMG~~GTdVa------KeAsDMVL 718 (972)
T KOG0202|consen 656 -LVFARAEPQH-----KLKIVEA---LQSRGEVVAMTGDGVNDAPALK--KADIGIAMGISGTDVA------KEASDMVL 718 (972)
T ss_pred -eEEEecCchh-----HHHHHHH---HHhcCCEEEecCCCccchhhhh--hcccceeecCCccHhh------HhhhhcEE
Confidence 0000011111 1122322 3333 34667899999999988 7888889885554554 67889999
Q ss_pred ecCCc
Q 016842 333 LPTML 337 (381)
Q Consensus 333 v~D~t 337 (381)
.+|.=
T Consensus 719 ~DDnF 723 (972)
T KOG0202|consen 719 ADDNF 723 (972)
T ss_pred ecCcH
Confidence 98853
No 120
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=95.32 E-value=0.078 Score=48.42 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=27.4
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChH-------HHHHHHHHHhcC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLA-------DIIEEVLRQKVH 218 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~-------~~Ie~vL~~~~g 218 (381)
++++.||+.|.++.|.+.|..++++|+... ..-...|+++++
T Consensus 71 ~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~ 119 (191)
T PF06941_consen 71 NLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFP 119 (191)
T ss_dssp T--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcC
Confidence 578999999999999999966666665542 233456777644
No 121
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=95.01 E-value=0.052 Score=48.66 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=41.8
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEE
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVF 233 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~F 233 (381)
.+.+|||+.+||+.|++. ++++|+|++...+++.+++.. + |.-.+|++++.+
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~l-d---p~~~~F~~ri~~ 107 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLI-D---PDGKYFGDRIIS 107 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHh-C---cCCCeeccEEEE
Confidence 578999999999999966 999999999999999999876 4 222355555444
No 122
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=94.83 E-value=0.11 Score=57.50 Aligned_cols=141 Identities=17% Similarity=0.245 Sum_probs=86.3
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l 257 (381)
-+.|||+++-++.|++.||.+-.+++-.-.-...+-.+. |+..|+..-.+=+ |. .|. ..+..+.
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eC-GILt~~~d~~~lE------G~--eFr-----~~s~ee~-- 709 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIAREC-GILTPGGDFLALE------GK--EFR-----ELSQEER-- 709 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHc-ccccCCCccceec------ch--hhh-----hcCHHHH--
Confidence 489999999999999999999999999988888887777 7654433211110 11 121 1111100
Q ss_pred cccccccccCCCCCCCCcc---cccCCC-CceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEe
Q 016842 258 DMAAPLHEHFGDTDGPNYD---NASVKN-RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYL 333 (381)
Q Consensus 258 ~k~~~~~~~~g~~~~~~~~---~~~l~~-r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv 333 (381)
++-.|--..+++ .++... .+.+++ +.-|-.-|||.||-.+.+ .||+-|+-|--.-.+. +++-||++.
T Consensus 710 ~~i~pkl~VlAR-SSP~DK~lLVk~L~~~g~VVAVTGDGTNDaPALk--eADVGlAMGIaGTeVA------KEaSDIIi~ 780 (1034)
T KOG0204|consen 710 DKIWPKLRVLAR-SSPNDKHLLVKGLIKQGEVVAVTGDGTNDAPALK--EADVGLAMGIAGTEVA------KEASDIIIL 780 (1034)
T ss_pred Hhhhhhheeeec-CCCchHHHHHHHHHhcCcEEEEecCCCCCchhhh--hcccchhccccchhhh------hhhCCeEEE
Confidence 000000000000 001100 011223 444556799999999998 8899999888776666 788999999
Q ss_pred cCCchHHHHH
Q 016842 334 PTMLALLVYR 343 (381)
Q Consensus 334 ~D~t~~~~~~ 343 (381)
+|.=-.+|..
T Consensus 781 DDNFssIVk~ 790 (1034)
T KOG0204|consen 781 DDNFSSIVKA 790 (1034)
T ss_pred cCchHHHHHH
Confidence 9976555543
No 123
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=94.59 E-value=0.073 Score=52.78 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=44.2
Q ss_pred CCccc-ccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEE
Q 016842 177 LIAFR-DGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVF 233 (381)
Q Consensus 177 ~i~Lr-pG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~F 233 (381)
.+.+| ||+.++|+.|+++|++++|+|+|....++..|+.. |....-..|+++.-..
T Consensus 145 ~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~l-gL~~yFDvII~~g~i~ 201 (303)
T PHA03398 145 PVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKET-KLEGYFDIIICGGRKA 201 (303)
T ss_pred ccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHc-CCCccccEEEECCCcc
Confidence 46677 99999999999999999999999999999999987 6421112466665444
No 124
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=94.37 E-value=0.026 Score=64.76 Aligned_cols=40 Identities=10% Similarity=0.108 Sum_probs=36.5
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
++||++++.++.|++.||++.++||-...-...+-++. |+
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~-gi 695 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVAREC-GI 695 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CC
Confidence 79999999999999999999999999988888887776 76
No 125
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=94.24 E-value=0.094 Score=57.30 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=29.7
Q ss_pred cCCCceEECChhHHHHHHHHHH--hcCCCceEEEEeCCcccccc
Q 016842 57 DLSKFTIKGDPQSLQNKISQIR--MAGPSKLQVIADFDGTLTRY 98 (381)
Q Consensus 57 ~~~~~v~i~d~~~~~~kl~~~~--~~g~~klqVi~DFDgTIT~~ 98 (381)
..-+++++.|-+-+-+-+..++ .+|..+-.|++|+||||...
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KLIfsDLDGTLLd~ 430 (694)
T PRK14502 387 KYLPQMVLPDGELISRAARPSRLPSSGQFKKIVYTDLDGTLLNP 430 (694)
T ss_pred HhchheeCCCCCccchhhhcccCCCcCceeeEEEEECcCCCcCC
Confidence 4556667777666665555443 35667789999999999984
No 126
>PTZ00445 p36-lilke protein; Provisional
Probab=94.06 E-value=0.15 Score=48.27 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=31.1
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChH---------------HHHHHHHHHh
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLA---------------DIIEEVLRQK 216 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~---------------~~Ie~vL~~~ 216 (381)
.++|.|+.++..|++.||+++|+|=+-. .+|+..|+.-
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s 127 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKS 127 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhc
Confidence 5788899999999999999999985543 3788888854
No 127
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=93.98 E-value=0.054 Score=47.70 Aligned_cols=93 Identities=10% Similarity=0.015 Sum_probs=59.6
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccc
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHA 256 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~ 256 (381)
+=.|-+.+.+.++.|++. +.++|+|+--.-.++..++-. |+ |--+| +.+. |...|..
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~-gi--~~~rv----~a~a-------------~~e~K~~-- 84 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFV-GI--PVERV----FAGA-------------DPEMKAK-- 84 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHc-CC--ceeee----eccc-------------CHHHHHH--
Confidence 347788899999999999 999999988877777766644 54 21111 1111 1111221
Q ss_pred ccccccccccCCCCCCCCcccccCCCCceEEEEcCCCCCcccccCCCccc-eeeecc
Q 016842 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYET-RISVGF 312 (381)
Q Consensus 257 l~k~~~~~~~~g~~~~~~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~-v~aiGf 312 (381)
.++..+ +.++.++++|||.||.-|.. .+|. +..++-
T Consensus 85 ----------------ii~eLk--k~~~k~vmVGnGaND~laLr--~ADlGI~tiq~ 121 (152)
T COG4087 85 ----------------IIRELK--KRYEKVVMVGNGANDILALR--EADLGICTIQQ 121 (152)
T ss_pred ----------------HHHHhc--CCCcEEEEecCCcchHHHhh--hcccceEEecc
Confidence 222222 24678999999999999987 5554 244443
No 128
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=93.86 E-value=0.21 Score=46.13 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCCcccccCCCccceeeeccC
Q 016842 284 TNVLLLGDHIGDLGMSDGLKYETRISVGFL 313 (381)
Q Consensus 284 ~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfL 313 (381)
.+++++|||.||+.|.. .++..++.|--
T Consensus 164 ~~~i~iGDs~ND~~ml~--~ag~~vam~na 191 (215)
T TIGR01487 164 EEVAAIGDSENDIDLFR--VVGFKVAVANA 191 (215)
T ss_pred HHEEEECCCHHHHHHHH--hCCCeEEcCCc
Confidence 46999999999999998 55555555543
No 129
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=93.60 E-value=0.82 Score=43.77 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=38.1
Q ss_pred HHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHH---HHHHHHHhcC
Q 016842 169 IKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADI---IEEVLRQKVH 218 (381)
Q Consensus 169 i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~---Ie~vL~~~~g 218 (381)
+.+.+.....+..||+.+|++.|+++|+.++++|+=.... ...-|++. |
T Consensus 110 ~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~-G 161 (229)
T TIGR01675 110 FWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINA-G 161 (229)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHc-C
Confidence 3344555677999999999999999999999999876544 55666665 5
No 130
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=93.45 E-value=0.088 Score=45.24 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=34.6
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecC-hHHHHHHHHHHh
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAG-LADIIEEVLRQK 216 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG-~~~~Ie~vL~~~ 216 (381)
.+.||+.+++++|+++|++++|+|++ ...++..+++..
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~ 67 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIF 67 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhc
Confidence 67899999999999999999999999 788888888765
No 131
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=93.26 E-value=0.24 Score=47.17 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=35.4
Q ss_pred HHHccCCcccccHHHHHHHHHHCCCCEEEEecCh---HHHHHHHHHHhcC
Q 016842 172 SVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGL---ADIIEEVLRQKVH 218 (381)
Q Consensus 172 ~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~---~~~Ie~vL~~~~g 218 (381)
++.+...+..||+.+|+++++++|+.|+++|+=. +..-..-|++. |
T Consensus 108 wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~-G 156 (229)
T PF03767_consen 108 WVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKA-G 156 (229)
T ss_dssp HHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHH-T
T ss_pred HHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHc-C
Confidence 3444455889999999999999999999999643 45555666766 5
No 132
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=92.44 E-value=0.18 Score=57.99 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=34.4
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
++|||+++.++.|++.||++.++||-...-...+-++. |.
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~-~i 670 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSC-RL 670 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHh-CC
Confidence 89999999999999999999999987776666666665 54
No 133
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=92.41 E-value=0.23 Score=47.06 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCCcccccCCC-ccceeeeccCchHH
Q 016842 283 RTNVLLLGDHIGDLGMSDGLK-YETRISVGFLNDNI 317 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~-~d~v~aiGfLn~~v 317 (381)
..+++++||+.||+.|.. . +...++.+--.+.+
T Consensus 183 ~~~~i~~GD~~ND~~ml~--~~~~~~va~~na~~~~ 216 (249)
T TIGR01485 183 PSQTLVCGDSGNDIELFE--IGSVRGVIVSNAQEEL 216 (249)
T ss_pred ccCEEEEECChhHHHHHH--ccCCcEEEECCCHHHH
Confidence 568999999999999987 3 33444554443333
No 134
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=92.21 E-value=0.48 Score=43.25 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeeccCchHH
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNI 317 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~v 317 (381)
..+++.+|||.||+.|.+ .++.-++.|.-.+.+
T Consensus 202 ~~~~~~~GD~~ND~~Ml~--~~~~~~am~na~~~~ 234 (254)
T PF08282_consen 202 PEDIIAFGDSENDIEMLE--LAGYSVAMGNATPEL 234 (254)
T ss_dssp GGGEEEEESSGGGHHHHH--HSSEEEEETTS-HHH
T ss_pred cceeEEeecccccHhHHh--hcCeEEEEcCCCHHH
Confidence 467888999999999987 556666666554444
No 135
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=91.93 E-value=0.13 Score=45.16 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=32.9
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
.+.+|||+.+||++|.+. +.++|+|+|...+++.+++..
T Consensus 34 ~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~l 72 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDAL 72 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHH
T ss_pred eEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhh
Confidence 578999999999999665 999999999999999999987
No 136
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=91.55 E-value=1.1 Score=42.50 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=24.3
Q ss_pred HHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 186 KLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 186 efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
+.++.++++|++++|+||-.-..+..++++. +.
T Consensus 27 ~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l-~~ 59 (264)
T COG0561 27 EALARLREKGVKVVLATGRPLPDVLSILEEL-GL 59 (264)
T ss_pred HHHHHHHHCCCEEEEECCCChHHHHHHHHHc-CC
Confidence 3455567788888888888887888888775 53
No 137
>PLN02151 trehalose-phosphatase
Probab=91.34 E-value=0.68 Score=47.08 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=23.1
Q ss_pred CChhHHHHHHHHHHhc-CCCceEEEEeCCcccccc
Q 016842 65 GDPQSLQNKISQIRMA-GPSKLQVIADFDGTLTRY 98 (381)
Q Consensus 65 ~d~~~~~~kl~~~~~~-g~~klqVi~DFDgTIT~~ 98 (381)
+-|..+. .+.++... ..+++.+++||||||+.+
T Consensus 79 ~~p~a~~-~~~~~~~~~~~~~~ll~lDyDGTL~PI 112 (354)
T PLN02151 79 EHPSALN-MFEEILHKSEGKQIVMFLDYDGTLSPI 112 (354)
T ss_pred hCChHHH-HHHHHHHhhcCCceEEEEecCccCCCC
Confidence 4455554 44555544 457899999999999984
No 138
>PLN03190 aminophospholipid translocase; Provisional
Probab=91.21 E-value=0.1 Score=60.61 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=32.0
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
++|+|+++.++.|++.||.+.++||-...-...+-++.
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~ 763 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSS 763 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHh
Confidence 79999999999999999999999998776555554443
No 139
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=91.20 E-value=0.73 Score=46.68 Aligned_cols=41 Identities=7% Similarity=0.102 Sum_probs=37.9
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcC
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVH 218 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g 218 (381)
+...||+.++|+.|+++|++++|+|++...+++.+|+...|
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 66799999999999999999999999999999999998644
No 140
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=91.16 E-value=0.3 Score=44.17 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=29.5
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecCh---HHHHHHHHHHh
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGL---ADIIEEVLRQK 216 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~---~~~Ie~vL~~~ 216 (381)
..++|+.+++..++++|+.++=+|+=. .......|++.
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 457899999999999999999999754 34556666544
No 141
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=90.33 E-value=0.45 Score=39.38 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=30.0
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChH---HHHHHHHHHhcCC
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLA---DIIEEVLRQKVHK 219 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~---~~Ie~vL~~~~g~ 219 (381)
-.+-||+.|++++|+++|+|++++|.+-. .-+..-|+.. |+
T Consensus 13 ~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~-Gi 56 (101)
T PF13344_consen 13 NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKL-GI 56 (101)
T ss_dssp TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHT-TT
T ss_pred CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhc-Cc
Confidence 46789999999999999999999997763 2334444554 65
No 142
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=90.30 E-value=0.37 Score=51.41 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=31.8
Q ss_pred ccccHHHHHHHHHHCCCCEEEEecChH------------HHHHHHHHHhcCC
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSAGLA------------DIIEEVLRQKVHK 219 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~SaG~~------------~~Ie~vL~~~~g~ 219 (381)
+-||+.+.|+.|++.|++++|+|+-.+ ..++.+|++. |.
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~l-gi 248 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKL-GV 248 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHc-CC
Confidence 468999999999999999999997333 3578888876 54
No 143
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=89.91 E-value=4.1 Score=39.35 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=64.8
Q ss_pred HHHHhcCCCceEEEEeCCccccccccCCCccccHHHHHhccC-hhHHHHH-HHHHHhhCCCCCCCCCCHHHHHHHHH-HH
Q 016842 75 SQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN-PEYDAKR-QALYEYYHPLEFSPTVPLEEKTKLME-EW 151 (381)
Q Consensus 75 ~~~~~~g~~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~-~e~~~~~-~~L~~~Y~piE~d~~is~eEk~~~M~-Ew 151 (381)
.+..+.......||+|-|-||.. +. +... +.|.... ..|... ..+..++.+..+ +|
T Consensus 11 ~~~~~~~~~~tLvvfDiDdTLi~--------~~-----~~lg~~~w~~~~~~~l~~~--------~~~~~~~~~~~~~~~ 69 (252)
T PF11019_consen 11 QDYLENADQDTLVVFDIDDTLIT--------PK-----QPLGSPAWYQWQLGKLQKR--------GKSEYKAVECIFEEW 69 (252)
T ss_pred HHHHHcCCCCeEEEEEcchhhhc--------Cc-----cccCCchhHHHHHHHHHhh--------ccchhhhhhHHHHHH
Confidence 33444555999999999999998 11 1122 4455542 244222 123333333333 44
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 152 WGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 152 ~~~~~~Ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
... +.+... ...+.+.+.++++.|+++|+|++.+|+....+....+++.
T Consensus 70 l~~--------------i~~~~~--~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~L 118 (252)
T PF11019_consen 70 LSL--------------IFELRK--MELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLREL 118 (252)
T ss_pred HHH--------------HHhhcc--eEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHH
Confidence 411 111222 2467788999999999999999999999987777777654
No 144
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=89.90 E-value=0.52 Score=44.54 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=34.8
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHH--HHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIE--EVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie--~vL~~~~g~ 219 (381)
+..+-||+.+++++|+++|++++|+|++.....+ ..|++. |+
T Consensus 22 ~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~-gl 65 (242)
T TIGR01459 22 GNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL-GI 65 (242)
T ss_pred CCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC-CC
Confidence 3567899999999999999999999998876655 667765 54
No 145
>PLN02580 trehalose-phosphatase
Probab=89.83 E-value=1.1 Score=46.22 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=18.7
Q ss_pred HHHHHHhc-CCCceEEEEeCCcccccc
Q 016842 73 KISQIRMA-GPSKLQVIADFDGTLTRY 98 (381)
Q Consensus 73 kl~~~~~~-g~~klqVi~DFDgTIT~~ 98 (381)
...+|.+. ..+++.+++||||||+.+
T Consensus 107 ~~~~~~~~~~~k~~~LfLDyDGTLaPI 133 (384)
T PLN02580 107 SFEQIANFAKGKKIALFLDYDGTLSPI 133 (384)
T ss_pred HHHHHHHHhhcCCeEEEEecCCccCCC
Confidence 33444433 446899999999999984
No 146
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=89.82 E-value=0.7 Score=44.72 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCCcccccCCC--ccceeeec
Q 016842 283 RTNVLLLGDHIGDLGMSDGLK--YETRISVG 311 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~--~d~v~aiG 311 (381)
...++++||+.||..|...+. ...-++.|
T Consensus 190 ~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg 220 (266)
T PRK10187 190 GRTPVFVGDDLTDEAGFAVVNRLGGISVKVG 220 (266)
T ss_pred CCeEEEEcCCccHHHHHHHHHhcCCeEEEEC
Confidence 457999999999999976331 13445555
No 147
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=89.66 E-value=0.51 Score=44.05 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=35.4
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
+..|||+.+||+++.+ .+.++|+||+...+++.++...
T Consensus 44 ~~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 44 ELMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred EEeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHHh
Confidence 4689999999999999 6999999999999999999976
No 148
>PLN03017 trehalose-phosphatase
Probab=89.19 E-value=1.4 Score=44.96 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=22.7
Q ss_pred CChhHHHHHHHHHHh-cCCCceEEEEeCCcccccc
Q 016842 65 GDPQSLQNKISQIRM-AGPSKLQVIADFDGTLTRY 98 (381)
Q Consensus 65 ~d~~~~~~kl~~~~~-~g~~klqVi~DFDgTIT~~ 98 (381)
+-|..+ ..+.++.. ...+++.|++||||||+.+
T Consensus 92 ~~psal-~~~~~~~~~~~~k~~llflD~DGTL~Pi 125 (366)
T PLN03017 92 QHPSAL-EMFEQIMEASRGKQIVMFLDYDGTLSPI 125 (366)
T ss_pred hCChHH-HHHHHHHHHhcCCCeEEEEecCCcCcCC
Confidence 345554 34455554 3556899999999999974
No 149
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=89.18 E-value=1.7 Score=41.70 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=22.5
Q ss_pred HHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 187 LFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 187 fl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
.++.|+++|++++|+||-....+..++++.
T Consensus 32 ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l 61 (271)
T PRK03669 32 WLTRLREAQVPVILCSSKTAAEMLPLQQTL 61 (271)
T ss_pred HHHHHHHcCCeEEEEcCCCHHHHHHHHHHh
Confidence 344566788888888888777788887775
No 150
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=89.13 E-value=0.77 Score=42.43 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=23.7
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEec
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSA 203 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~Sa 203 (381)
..+.||+.+.+..|++.|+.++|+|.
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTN 55 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTN 55 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEEC
Confidence 46889999999999999999999995
No 151
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=87.35 E-value=10 Score=36.45 Aligned_cols=55 Identities=15% Similarity=0.055 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHc----cCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 162 GGLTYDAIKKSVSN----ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 162 ~glt~~~i~e~v~~----~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
..++.++..++|.. ..+...+-..+||-.|+.++ ..+||.|...-...+|+.. |+
T Consensus 79 ~~~d~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~L-Gi 137 (244)
T KOG3109|consen 79 YIFDADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKL-GI 137 (244)
T ss_pred ccCCHHHHHHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHh-Ch
Confidence 34456777777654 23667778888888888776 8899999999999999986 76
No 152
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=87.23 E-value=5.6 Score=38.35 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=29.1
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
.-.+-+|+.++++.|++.|+.+.|+|.... -.+.++...
T Consensus 111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d~-r~~~~l~~~ 149 (237)
T KOG3085|consen 111 AWKYLDGMQELLQKLRKKGTILGIISNFDD-RLRLLLLPL 149 (237)
T ss_pred CceeccHHHHHHHHHHhCCeEEEEecCCcH-HHHHHhhcc
Confidence 346677889999999999988888885544 455555544
No 153
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.31 E-value=1.8 Score=42.24 Aligned_cols=78 Identities=13% Similarity=0.010 Sum_probs=58.7
Q ss_pred CCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccccccccccccCCCCC--CCCcccccCCCCceEEEEcCCCCCccc
Q 016842 221 FKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALDMAAPLHEHFGDTD--GPNYDNASVKNRTNVLLLGDHIGDLGM 298 (381)
Q Consensus 221 ~~ni~IvSN~m~FdedG~l~gf~~~~ih~~nK~~~~l~k~~~~~~~~g~~~--~~~~~~~~l~~r~nVI~IGDg~~Dl~m 298 (381)
..+++..||++.+.+++..+.+.|..|+..++++++....++.+.-|+.+. ...+.| .++++|+++||-..|+.+
T Consensus 212 ~~v~~~~s~yf~~~~~~~nVillGdsigdl~ma~gv~~~~~iLkig~l~d~vee~~~~y---md~ydIvL~~D~tldv~~ 288 (298)
T KOG3128|consen 212 SSVLQNESEYFHQLAGRVNVILLGDSIGDLHMADGVPRVGHILKIGYLNDSVEEALEKY---MDSYDIVLVHDETLDVAN 288 (298)
T ss_pred hHHHHhhhHHHhhccCCceEEEeccccccchhhcCCcccccceeeecccchHHHHHHHH---HhhcceEEecCcccchhH
Confidence 456788999999998888888999999999999887766555554444432 122223 367899999999999998
Q ss_pred ccC
Q 016842 299 SDG 301 (381)
Q Consensus 299 a~g 301 (381)
+.+
T Consensus 289 s~l 291 (298)
T KOG3128|consen 289 SIL 291 (298)
T ss_pred HHH
Confidence 753
No 154
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=80.84 E-value=0.8 Score=41.79 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=48.0
Q ss_pred EEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 016842 87 VIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTY 166 (381)
Q Consensus 87 Vi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~glt~ 166 (381)
|++|+||||.... +. -.++..+.++++.++=+++-+....+..+-.+.+. +|.-..-++..+|.--
T Consensus 1 i~~DlDGTLl~~~--~~-----------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~-~~~~~~~~I~~nGa~i 66 (254)
T PF08282_consen 1 IFSDLDGTLLNSD--GK-----------ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLK-ELGIDDYFICSNGALI 66 (254)
T ss_dssp EEEECCTTTCSTT--SS-----------SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHH-HTTHCSEEEEGGGTEE
T ss_pred cEEEECCceecCC--Ce-----------eCHHHHHHHHhhcccceEEEEEccCcccccccccc-cccchhhhccccccee
Confidence 7899999998721 11 11344455555555555555555555554333332 2221111111111111
Q ss_pred -HHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecC
Q 016842 167 -DAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAG 204 (381)
Q Consensus 167 -~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG 204 (381)
..-.+.+....+. ..-+.+++++++++++.+.+.+..
T Consensus 67 ~~~~~~~l~~~~i~-~~~~~~i~~~~~~~~~~~~~~~~~ 104 (254)
T PF08282_consen 67 DDPKGKILYEKPID-SDDVKKILKYLKEHNISFFFYTDD 104 (254)
T ss_dssp EETTTEEEEEESB--HHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eecccccchhhhee-ccchhheeehhhhcccccccccce
Confidence 0000011111111 334556778888888887777643
No 155
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=80.76 E-value=0.76 Score=42.42 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=26.3
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeeccCchHHH
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIE 318 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~ve 318 (381)
..+++++|||.||+.|+. .++..++.|--.+.+.
T Consensus 173 ~~~~i~~GD~~NDi~m~~--~ag~~vam~Na~~~vk 206 (230)
T PRK01158 173 PEEVAAIGDSENDLEMFE--VAGFGVAVANADEELK 206 (230)
T ss_pred HHHEEEECCchhhHHHHH--hcCceEEecCccHHHH
Confidence 468999999999999998 5666667665555444
No 156
>PLN02423 phosphomannomutase
Probab=79.38 E-value=4.5 Score=38.56 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=14.9
Q ss_pred cCCCceEEEEeCCccccc
Q 016842 80 AGPSKLQVIADFDGTLTR 97 (381)
Q Consensus 80 ~g~~klqVi~DFDgTIT~ 97 (381)
+...++.+++|+||||..
T Consensus 3 ~~~~~~i~~~D~DGTLl~ 20 (245)
T PLN02423 3 ARKPGVIALFDVDGTLTA 20 (245)
T ss_pred CCccceEEEEeccCCCcC
Confidence 345678888999999997
No 157
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=79.24 E-value=0.95 Score=43.02 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeeccCchHHH
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIE 318 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~ve 318 (381)
..+++.+|||.||+.|.. .++.-++.|--.+.+.
T Consensus 212 ~~~v~afGD~~NDi~Ml~--~ag~~vAm~NA~~~vK 245 (270)
T PRK10513 212 PEEVMAIGDQENDIAMIE--YAGVGVAMGNAIPSVK 245 (270)
T ss_pred HHHEEEECCchhhHHHHH--hCCceEEecCccHHHH
Confidence 568999999999999998 5666667665554443
No 158
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=78.87 E-value=2.9 Score=46.81 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=39.8
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeeccCchHHHhhHhhhhhccCEEEecCCchH
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLPTMLAL 339 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~vee~l~~Y~~~fDIVlv~D~t~~ 339 (381)
+.-|-..|||.||-.+.+ .+|...|.|.-...+- +.+-|+++++|.=-.
T Consensus 705 GaiVaVTGDGVNDsPALK--KADIGVAMGiaGSDvs------KqAADmILLDDNFAS 753 (1019)
T KOG0203|consen 705 GAIVAVTGDGVNDSPALK--KADIGVAMGIAGSDVS------KQAADMILLDDNFAS 753 (1019)
T ss_pred CcEEEEeCCCcCCChhhc--ccccceeeccccchHH------HhhcceEEecCcchh
Confidence 345677899999999998 7899899998877666 678899999886443
No 159
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=78.24 E-value=3.2 Score=40.15 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=37.0
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
...+.||+.++++.|+++|++++|+|+......+.+++.+
T Consensus 185 ~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l 224 (300)
T PHA02530 185 EDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL 224 (300)
T ss_pred cCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH
Confidence 4578999999999999999999999999999999999876
No 160
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=77.98 E-value=2 Score=40.77 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=16.1
Q ss_pred CceEEEEcCCCCCccccc
Q 016842 283 RTNVLLLGDHIGDLGMSD 300 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~ 300 (381)
...++|+||+.||..|+.
T Consensus 183 ~~~~i~iGD~~~D~~~~~ 200 (244)
T TIGR00685 183 GISPVYLGDDITDEDAFR 200 (244)
T ss_pred CCceEEEcCCCcHHHHHH
Confidence 357999999999999987
No 161
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=77.83 E-value=2.7 Score=48.78 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=28.5
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHH
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEV 212 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~v 212 (381)
-+|-+|+.|-++.|++.||++=|++|=-.+-...+
T Consensus 650 DkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNI 684 (1151)
T KOG0206|consen 650 DKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINI 684 (1151)
T ss_pred chhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHH
Confidence 36778999999999999999999998665444333
No 162
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=76.98 E-value=7.8 Score=43.92 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=20.8
Q ss_pred HHHHHHHH-HHCCCCEEEEecChHHHHHHHHH
Q 016842 184 VVKLFEFL-EERDIPVLIFSAGLADIIEEVLR 214 (381)
Q Consensus 184 ~~efl~~L-~~~gIpv~I~SaG~~~~Ie~vL~ 214 (381)
+.+.|+.| ++.|+.++|+||=-..-++.++.
T Consensus 621 ~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~ 652 (854)
T PLN02205 621 SIDILNTLCRDKNNMVFIVSARSRKTLADWFS 652 (854)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhC
Confidence 44455554 55678888888877777777664
No 163
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=76.83 E-value=18 Score=33.88 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=26.9
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHH
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLAD 207 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~ 207 (381)
.++-|.+.+.++.-++.|+|++|-|+|--.
T Consensus 102 ahlypDav~~ik~wk~~g~~vyiYSSGSV~ 131 (229)
T COG4229 102 AHLYPDAVQAIKRWKALGMRVYIYSSGSVK 131 (229)
T ss_pred cccCHhHHHHHHHHHHcCCcEEEEcCCCch
Confidence 578899999999999999999999999643
No 164
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=76.75 E-value=3.2 Score=41.16 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=34.2
Q ss_pred ccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
+.+|+.++++.|+++|++++|+|......+..+|+++
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~ 68 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERR 68 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhC
Confidence 4789999999999999999999999999999999973
No 165
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=76.75 E-value=4.3 Score=37.03 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=29.8
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecCh-HHHHHHHHHHh
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGL-ADIIEEVLRQK 216 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~-~~~Ie~vL~~~ 216 (381)
.+.|-|++.+.|+.|+++|++++++|-.. .+....+|+..
T Consensus 43 ~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l 83 (169)
T PF12689_consen 43 EVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLL 83 (169)
T ss_dssp EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHT
T ss_pred EEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhc
Confidence 58999999999999999999999999654 57899999976
No 166
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=76.40 E-value=1.1 Score=41.20 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=16.8
Q ss_pred CceEEEEcCCCCCccccc
Q 016842 283 RTNVLLLGDHIGDLGMSD 300 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~ 300 (381)
..+++++|||.||+.|..
T Consensus 195 ~~~vi~~GD~~NDi~ml~ 212 (221)
T TIGR02463 195 DVKTLGLGDGPNDLPLLE 212 (221)
T ss_pred CCcEEEECCCHHHHHHHH
Confidence 578999999999999987
No 167
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=76.34 E-value=3.3 Score=45.15 Aligned_cols=13 Identities=54% Similarity=0.825 Sum_probs=11.4
Q ss_pred EEEEeCCcccccc
Q 016842 86 QVIADFDGTLTRY 98 (381)
Q Consensus 86 qVi~DFDgTIT~~ 98 (381)
+||+|.|||||+.
T Consensus 532 IVISDIDGTITKS 544 (738)
T KOG2116|consen 532 IVISDIDGTITKS 544 (738)
T ss_pred EEEecCCCceEhh
Confidence 3899999999994
No 168
>PRK10976 putative hydrolase; Provisional
Probab=76.29 E-value=1.2 Score=42.34 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeeccCchHHH
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIE 318 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~ve 318 (381)
..+++.+|||.||+.|.. .++.-++.|--.+.+.
T Consensus 206 ~~~viafGD~~NDi~Ml~--~ag~~vAm~NA~~~vK 239 (266)
T PRK10976 206 LKDCIAFGDGMNDAEMLS--MAGKGCIMGNAHQRLK 239 (266)
T ss_pred HHHeEEEcCCcccHHHHH--HcCCCeeecCCcHHHH
Confidence 568999999999999988 4555556554444443
No 169
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=74.60 E-value=4 Score=39.62 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHH
Q 016842 162 GGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADI 208 (381)
Q Consensus 162 ~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~ 208 (381)
.|++++...+++.......-||+.||++|..++|..++-+|.=-..-
T Consensus 105 k~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~ 151 (274)
T COG2503 105 KGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQEN 151 (274)
T ss_pred CCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhc
Confidence 45667777777877778999999999999999999999999766543
No 170
>PLN02887 hydrolase family protein
Probab=74.43 E-value=17 Score=39.49 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=30.8
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
.+.+...+.++.|+++|+.++|+||=....+..++++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L 362 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMV 362 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh
Confidence 35555667888899999999999998877788888765
No 171
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=73.24 E-value=2.1 Score=40.09 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeeccCchHH
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNI 317 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~v 317 (381)
...++++||+.||+.|.. .++.-++.|--.+.+
T Consensus 175 ~~~~i~~GD~~nD~~ml~--~~~~~iav~na~~~~ 207 (236)
T TIGR02471 175 LEQILVAGDSGNDEEMLR--GLTLGVVVGNHDPEL 207 (236)
T ss_pred HHHEEEEcCCccHHHHHc--CCCcEEEEcCCcHHH
Confidence 457999999999999998 455555655444333
No 172
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=73.17 E-value=6.5 Score=36.25 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=23.5
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecCh---HHHHHHHHHHh
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGL---ADIIEEVLRQK 216 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~---~~~Ie~vL~~~ 216 (381)
+.++.+++..+..+++++ .++-++|=- ...-...|.+.
T Consensus 71 ~l~~q~v~~~L~~~~e~~-~L~~itar~~dl~~iT~~~l~~q 111 (194)
T COG5663 71 ALLAQLVKQVLPSLKEEH-RLIYITARKADLTRITYAWLFIQ 111 (194)
T ss_pred HHHHHHHHHHhHHHHhhc-eeeeeehhhHHHHHHHHHHHHHh
Confidence 466778888888899887 444444433 33444555544
No 173
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=73.13 E-value=1.5 Score=40.44 Aligned_cols=12 Identities=58% Similarity=0.739 Sum_probs=10.9
Q ss_pred EEEEeCCccccc
Q 016842 86 QVIADFDGTLTR 97 (381)
Q Consensus 86 qVi~DFDgTIT~ 97 (381)
.|++|+||||..
T Consensus 3 ~v~~DlDGTLl~ 14 (215)
T TIGR01487 3 LVAIDIDGTLTE 14 (215)
T ss_pred EEEEecCCCcCC
Confidence 688999999997
No 174
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=73.09 E-value=1.5 Score=42.01 Aligned_cols=30 Identities=33% Similarity=0.326 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeeccCc
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLN 314 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn 314 (381)
..+++.+|||.||+.|.+ .++.-++.|-.+
T Consensus 206 ~~~viafGDs~NDi~Ml~--~ag~gvAM~~~~ 235 (271)
T PRK03669 206 RPTTLGLGDGPNDAPLLD--VMDYAVVVKGLN 235 (271)
T ss_pred CceEEEEcCCHHHHHHHH--hCCEEEEecCCC
Confidence 578999999999999998 556666666444
No 175
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=72.71 E-value=8.2 Score=42.70 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCCcccccCCC-ccceeeec
Q 016842 283 RTNVLLLGDHIGDLGMSDGLK-YETRISVG 311 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~-~d~v~aiG 311 (381)
...++++||+.||..|...+. ....++.|
T Consensus 671 ~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG 700 (726)
T PRK14501 671 YDFVLAIGDDTTDEDMFRALPETAITVKVG 700 (726)
T ss_pred CCEEEEECCCCChHHHHHhcccCceEEEEC
Confidence 467999999999999987442 23344544
No 176
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=72.15 E-value=13 Score=36.98 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=11.6
Q ss_pred eEEEEeCCccccc
Q 016842 85 LQVIADFDGTLTR 97 (381)
Q Consensus 85 lqVi~DFDgTIT~ 97 (381)
+.|+||.||||.+
T Consensus 1 ~~~ifD~DGvL~~ 13 (321)
T TIGR01456 1 FGFAFDIDGVLFR 13 (321)
T ss_pred CEEEEeCcCceEC
Confidence 4689999999988
No 177
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=71.35 E-value=5.4 Score=34.65 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=10.7
Q ss_pred EEEEeCCccccc
Q 016842 86 QVIADFDGTLTR 97 (381)
Q Consensus 86 qVi~DFDgTIT~ 97 (381)
.|++|.||||..
T Consensus 3 ~i~~DiDGTL~~ 14 (126)
T TIGR01689 3 RLVMDLDNTITL 14 (126)
T ss_pred EEEEeCCCCccc
Confidence 688999999976
No 178
>PLN02645 phosphoglycolate phosphatase
Probab=71.17 E-value=8.5 Score=37.99 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=32.4
Q ss_pred ccccHHHHHHHHHHCCCCEEEEecChHHH---HHHHHHHhcCCCCCcceEEee
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSAGLADI---IEEVLRQKVHKSFKNVKIVSN 229 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~SaG~~~~---Ie~vL~~~~g~~~~ni~IvSN 229 (381)
+-||+.++++.|+++|++++++|+.-..- +..-|++. |+......|++.
T Consensus 45 ~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~l-Gi~~~~~~I~ts 96 (311)
T PLN02645 45 LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESL-GLNVTEEEIFSS 96 (311)
T ss_pred cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHC-CCCCChhhEeeh
Confidence 45899999999999999999999876322 22334443 653333344444
No 179
>PRK10444 UMP phosphatase; Provisional
Probab=70.91 E-value=5.4 Score=38.26 Aligned_cols=35 Identities=6% Similarity=0.244 Sum_probs=27.2
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHH
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVL 213 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL 213 (381)
.+-||..++++.|+++|+|++++|+....-.+.+.
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~ 51 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLA 51 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHH
Confidence 45789999999999999999999987754333333
No 180
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=70.77 E-value=5.8 Score=42.44 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=32.0
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.++||.+|=|+.|++-||+.+.+++-..--...+-++. |.
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EA-GV 486 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEA-GV 486 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHh-Cc
Confidence 46889999999999999999999988775555555555 64
No 181
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=70.29 E-value=2.1 Score=40.61 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeeccC
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFL 313 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfL 313 (381)
..+++++|||.||+.|.. .++.-++.|--
T Consensus 194 ~~~~~a~GD~~ND~~Ml~--~ag~~vam~Na 222 (256)
T TIGR01486 194 AIKVVGLGDSPNDLPLLE--VVDLAVVVPGP 222 (256)
T ss_pred CceEEEEcCCHhhHHHHH--HCCEEEEeCCC
Confidence 568999999999999998 45555554443
No 182
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=70.14 E-value=1.8 Score=40.75 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=16.5
Q ss_pred CceEEEEcCCCCCccccc
Q 016842 283 RTNVLLLGDHIGDLGMSD 300 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~ 300 (381)
..+++++||+.||+.|.+
T Consensus 199 ~~~~i~~GD~~nD~~ml~ 216 (225)
T TIGR02461 199 AIESVGLGDSENDFPMFE 216 (225)
T ss_pred cccEEEEcCCHHHHHHHH
Confidence 458999999999999998
No 183
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=70.11 E-value=6.2 Score=43.61 Aligned_cols=59 Identities=17% Similarity=0.347 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecChH
Q 016842 136 SPTVPLEEKTKLMEE----WWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (381)
Q Consensus 136 d~~is~eEk~~~M~E----w~~~~~~Ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~ 206 (381)
+..+|+-++.+.|.+ ..++-.+||+--|+. + .|.+.++.-++.|+..||++-.++|---
T Consensus 623 ~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGVE-D-----------kLQ~dVk~tLElLRNAgikiWMLTGDKl 685 (1051)
T KOG0210|consen 623 AAKLSISDRDQKMANVVERYLERDLELLGLTGVE-D-----------KLQDDVKPTLELLRNAGIKIWMLTGDKL 685 (1051)
T ss_pred hhhCccchHHHHHHHHHHHHHHhhhHHhcccChH-H-----------HHhhhhHhHHHHHhhcCcEEEEEcCcch
Confidence 355777777666654 555566666433331 2 3445566789999999999999997543
No 184
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=70.05 E-value=8.4 Score=37.78 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=33.3
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChH---HHHHHHHHHhcC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLA---DIIEEVLRQKVH 218 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~---~~Ie~vL~~~~g 218 (381)
+-..-||+.++++.|+++|+|++++|.+-. .....-|+...+
T Consensus 22 G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~ 66 (269)
T COG0647 22 GNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGG 66 (269)
T ss_pred CCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcC
Confidence 467889999999999999999999997764 435555666434
No 185
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=68.75 E-value=3.3 Score=39.12 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=19.1
Q ss_pred ceEEEEeCCcccccccc-CCCccccHHHHHhc
Q 016842 84 KLQVIADFDGTLTRYFI-NGSRGQSSHGLLQQ 114 (381)
Q Consensus 84 klqVi~DFDgTIT~~~~-~g~~~dts~~il~~ 114 (381)
++.|++|+||||...+. ++.-.+-...++++
T Consensus 1 ~~li~tDlDGTLl~~~~~~~~~~~~~~~~i~~ 32 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDGDNQALLRLNALLED 32 (249)
T ss_pred CeEEEEcCCCcCcCCCCCChHHHHHHHHHHHH
Confidence 47899999999997432 22223444444444
No 186
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=68.57 E-value=1.8 Score=41.34 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeeccCchHH
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNI 317 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~v 317 (381)
..+++.+|||.||+.|.+ .++.-++.|--.+.+
T Consensus 204 ~~~v~afGD~~NDi~Ml~--~ag~~vAm~Na~~~v 236 (272)
T PRK15126 204 LADCMAFGDAMNDREMLG--SVGRGFIMGNAMPQL 236 (272)
T ss_pred HHHeEEecCCHHHHHHHH--HcCCceeccCChHHH
Confidence 468999999999999998 555556655443333
No 187
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=68.29 E-value=4.5 Score=39.64 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCCcccccCCC--ccceeeeccC
Q 016842 284 TNVLLLGDHIGDLGMSDGLK--YETRISVGFL 313 (381)
Q Consensus 284 ~nVI~IGDg~~Dl~ma~gl~--~d~v~aiGfL 313 (381)
.-++++||-.+|-.|..-+. ....+++|+-
T Consensus 199 ~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~~~ 230 (266)
T COG1877 199 RFPIFAGDDLTDEDAFAAVNKLDSITVKVGVG 230 (266)
T ss_pred CcceecCCCCccHHHHHhhccCCCceEEecCC
Confidence 46999999999999976442 1234566655
No 188
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=68.00 E-value=6.4 Score=37.75 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=29.8
Q ss_pred ccccHHHHHHHHHHCCCCEEEEecChH---HHHHHHHHHhcCC
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSAGLA---DIIEEVLRQKVHK 219 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~SaG~~---~~Ie~vL~~~~g~ 219 (381)
+-||..++++.|+++|++++++|+... ..+...|+.. |+
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~-g~ 63 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRL-GF 63 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHc-CC
Confidence 678999999999999999999997543 2455556654 54
No 189
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=66.21 E-value=13 Score=35.96 Aligned_cols=47 Identities=13% Similarity=0.066 Sum_probs=31.0
Q ss_pred ccccHHHHHHHHHHCCCCEEEEecCh----HHHHHHHHHHhcCCCCCcceEEe
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSAGL----ADIIEEVLRQKVHKSFKNVKIVS 228 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~SaG~----~~~Ie~vL~~~~g~~~~ni~IvS 228 (381)
.-||+.++++.|+++|++++++|++- ..++ .-|++. |+.....+|++
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~-~~l~~~-G~~~~~~~i~t 69 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYA-LKFARL-GFNGLAEQLFS 69 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHH-HHHHHc-CCCCChhhEec
Confidence 45788899999999999999999853 2333 445554 65332234444
No 190
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=65.81 E-value=17 Score=36.61 Aligned_cols=132 Identities=11% Similarity=0.015 Sum_probs=64.9
Q ss_pred chhhhhhhccCC--CceEECC-hhHHHHHHHHHHhcCCCceEEEEeCCccccccccCCCccc--cHHHHHhccChhHHHH
Q 016842 48 SAQNKMENQDLS--KFTIKGD-PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQ--SSHGLLQQGNPEYDAK 122 (381)
Q Consensus 48 ~~~~~~~~~~~~--~~v~i~d-~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~~g~~~d--ts~~il~~~~~e~~~~ 122 (381)
|....|++.+.+ +.|.+.| |+.+.+||.+...++ ..|.-....+|.+.+ ....++.-+.. +.
T Consensus 189 g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~----------~~~~~~~~~~~~~p~~~~l~~~~~~~~~---~~ 255 (333)
T PRK00927 189 GPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDS----------ERLREIRYDLPNKPEVSNLLTIYSALSG---ES 255 (333)
T ss_pred CCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCC----------CcccccccCCCCCCccccHHHHHHHhCC---CC
Confidence 344589876553 7888887 778999999875332 222111112333322 33445555442 22
Q ss_pred HHHHHHhhCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHccCCcccccHHHHHHHHHH
Q 016842 123 RQALYEYYHPLEFSPTVPLEEKT-KLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEE 193 (381)
Q Consensus 123 ~~~L~~~Y~piE~d~~is~eEk~-~~M~Ew~~~~~~Ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~ 193 (381)
..++.+.|..+++.+ ..+.+.+ ..+.+.+....+-..+..-.++.+.+++.++.-.-|.=+.+.++..++
T Consensus 256 ~eel~~~~~~g~~~~-~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~~G~~~a~~~a~~~l~~v~~ 326 (333)
T PRK00927 256 IEELEAEYEAGGKGY-GDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILAEGAEKARAVASKTLKEVRE 326 (333)
T ss_pred HHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554333211 1111111 333344433333333333356667777666555556666666655554
No 191
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=65.72 E-value=3 Score=40.06 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCCcccccCCCccceeeeccCchHH
Q 016842 284 TNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNI 317 (381)
Q Consensus 284 ~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~v 317 (381)
.+++++|||.||+.|+. .++.-++.|--.+.+
T Consensus 208 ~~v~~~GDs~NDi~m~~--~ag~~vam~NA~~~~ 239 (273)
T PRK00192 208 VETIALGDSPNDLPMLE--AADIAVVVPGPDGPN 239 (273)
T ss_pred ceEEEEcCChhhHHHHH--hCCeeEEeCCCCCCC
Confidence 79999999999999998 445555554444333
No 192
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=65.49 E-value=14 Score=34.77 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 183 G~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
+..+.++.|+++|++++++|+-...-+..++++. |.
T Consensus 19 ~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~l-g~ 54 (225)
T TIGR02461 19 PAREALEELKDLGFPIVFVSSKTRAEQEYYREEL-GV 54 (225)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc-CC
Confidence 3556888899999999999998887788888776 64
No 193
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=65.10 E-value=16 Score=33.46 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.5
Q ss_pred HHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 184 VVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 184 ~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
..+.++.|+++|++++|+|+-....+..++++. +.
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l-~~ 55 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKAL-GL 55 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-CC
Confidence 456888899999999999999999999999876 53
No 194
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=65.00 E-value=15 Score=35.03 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=27.1
Q ss_pred cccHHHHHHHHHHCCCCEEEEecCh---HHHHHHHHHHhcCC
Q 016842 181 RDGVVKLFEFLEERDIPVLIFSAGL---ADIIEEVLRQKVHK 219 (381)
Q Consensus 181 rpG~~efl~~L~~~gIpv~I~SaG~---~~~Ie~vL~~~~g~ 219 (381)
-||..++++.|+++|++++++|++- ...+...|++. |.
T Consensus 19 i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~-g~ 59 (249)
T TIGR01457 19 IPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASF-DI 59 (249)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc-CC
Confidence 3578888999999999999998622 34455666654 54
No 195
>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]
Probab=64.96 E-value=7.2 Score=37.60 Aligned_cols=38 Identities=32% Similarity=0.557 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHhcCCC-ce-EEEEeCCcccccccc-CCCc
Q 016842 67 PQSLQNKISQIRMAGPS-KL-QVIADFDGTLTRYFI-NGSR 104 (381)
Q Consensus 67 ~~~~~~kl~~~~~~g~~-kl-qVi~DFDgTIT~~~~-~g~~ 104 (381)
.+.+.+|....++||.. .+ ++++||||++-.... ||.+
T Consensus 12 ~etL~~kf~~~~~g~~P~sid~~vaDFDgv~yhiSnp~gdk 52 (301)
T KOG2826|consen 12 EETLNEKFENARAGGKPESIDVTVADFDGVLYHISNPNGDK 52 (301)
T ss_pred HHHHHHHHHHHhccCCCcceeEEEeccCceEEEccCCCCCc
Confidence 35788999999888655 44 789999999987654 6654
No 196
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=64.45 E-value=2.3 Score=32.70 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=20.0
Q ss_pred CceEEEEcCC-CCCcccccCCCccce
Q 016842 283 RTNVLLLGDH-IGDLGMSDGLKYETR 307 (381)
Q Consensus 283 r~nVI~IGDg-~~Dl~ma~gl~~d~v 307 (381)
..++++|||+ .+|+.++..+....+
T Consensus 21 ~~~~~~VGD~~~~Di~~a~~~G~~~i 46 (75)
T PF13242_consen 21 PSRCVMVGDSLETDIEAAKAAGIDTI 46 (75)
T ss_dssp GGGEEEEESSTTTHHHHHHHTTSEEE
T ss_pred HHHEEEEcCCcHhHHHHHHHcCCcEE
Confidence 4689999999 999999985544443
No 197
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=63.85 E-value=11 Score=37.02 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=34.7
Q ss_pred HHHHccCCcccccHHHHHHHHHHCCCCEEEEecChH---HHHHHHHHHh
Q 016842 171 KSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLA---DIIEEVLRQK 216 (381)
Q Consensus 171 e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~---~~Ie~vL~~~ 216 (381)
+.+.....+.-||+.+|+++++++|+.++++|+=.. ..-..-|++.
T Consensus 137 ~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~ka 185 (275)
T TIGR01680 137 EFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKA 185 (275)
T ss_pred HHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHc
Confidence 445555678899999999999999999999997654 3344444444
No 198
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=61.98 E-value=19 Score=34.56 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=35.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeee
Q 016842 181 RDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNR 230 (381)
Q Consensus 181 rpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~ 230 (381)
.++..+.++.|+++|++++|+|+-....+...+++. +... --|..|-
T Consensus 23 ~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l-~l~~--~~i~~nG 69 (273)
T PRK00192 23 YEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKEL-GLED--PFIVENG 69 (273)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCC--CEEEEcC
Confidence 345667888999999999999999888888888876 5421 1355554
No 199
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=61.66 E-value=19 Score=33.86 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=38.3
Q ss_pred ccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeee-EEcCCCc
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRM-VFDKDGH 238 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m-~FdedG~ 238 (381)
+.+...+.++.|+++|++++|+||-....+..++++. +... --|.+|-. .++.+|+
T Consensus 17 i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~-~~~~--~~I~~NGa~i~~~~~~ 73 (256)
T TIGR00099 17 ISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKEL-GLDT--PFITANGAAVIDDQGE 73 (256)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CCCC--CEEEcCCcEEECCCCC
Confidence 4455667888899999999999999988888888875 5421 13445532 3443343
No 200
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=61.56 E-value=4.7 Score=38.19 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeeccC
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFL 313 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfL 313 (381)
..+|+.+|||.||+.|.. .+..-++.|--
T Consensus 205 ~~~v~afGD~~ND~~Ml~--~ag~gvam~Na 233 (264)
T COG0561 205 LEEVIAFGDSTNDIEMLE--VAGLGVAMGNA 233 (264)
T ss_pred HHHeEEeCCccccHHHHH--hcCeeeeccCC
Confidence 458999999999999988 44444444433
No 201
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=61.42 E-value=4.1 Score=37.01 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=12.4
Q ss_pred ceEEEEeCCccccc
Q 016842 84 KLQVIADFDGTLTR 97 (381)
Q Consensus 84 klqVi~DFDgTIT~ 97 (381)
--.|++|+|||||.
T Consensus 21 ikli~~D~Dgtl~~ 34 (183)
T PRK09484 21 IRLLICDVDGVFSD 34 (183)
T ss_pred ceEEEEcCCeeeec
Confidence 45799999999997
No 202
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=60.67 E-value=3.7 Score=38.71 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeec
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVG 311 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiG 311 (381)
..+++++|||.||+.|.. .++..++.|
T Consensus 204 ~~~~~~~GD~~nD~~m~~--~~~~~~a~~ 230 (256)
T TIGR00099 204 LEDVIAFGDGMNDIEMLE--AAGYGVAMG 230 (256)
T ss_pred HHHEEEeCCcHHhHHHHH--hCCceeEec
Confidence 468999999999999998 555555555
No 203
>PLN02887 hydrolase family protein
Probab=60.22 E-value=4.2 Score=44.08 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=26.6
Q ss_pred CceEEEEcCCCCCcccccCCCccceeeeccCchHHH
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIE 318 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~ve 318 (381)
..+|+.+|||.||+.|.. .++.-++.|--.+.+.
T Consensus 523 ~eeviAFGDs~NDIeMLe--~AG~gVAMgNA~eeVK 556 (580)
T PLN02887 523 PDEIMAIGDGENDIEMLQ--LASLGVALSNGAEKTK 556 (580)
T ss_pred HHHEEEEecchhhHHHHH--HCCCEEEeCCCCHHHH
Confidence 468999999999999998 5666677666655554
No 204
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=59.47 E-value=5.6 Score=38.00 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=17.3
Q ss_pred CceEEEEcCCCCCcccccCC
Q 016842 283 RTNVLLLGDHIGDLGMSDGL 302 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl 302 (381)
..+++.+|||-||++|..+.
T Consensus 181 ~~~vl~aGDSgND~~mL~~~ 200 (247)
T PF05116_consen 181 PEQVLVAGDSGNDLEMLEGG 200 (247)
T ss_dssp GGGEEEEESSGGGHHHHCCS
T ss_pred HHHEEEEeCCCCcHHHHcCc
Confidence 46899999999999998743
No 205
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=57.92 E-value=5.9 Score=37.20 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=15.0
Q ss_pred ceEEEEcCCCCCcccccCC
Q 016842 284 TNVLLLGDHIGDLGMSDGL 302 (381)
Q Consensus 284 ~nVI~IGDg~~Dl~ma~gl 302 (381)
..++|+||-.+|-.|..-+
T Consensus 185 ~~~l~~GDD~tDE~~f~~~ 203 (235)
T PF02358_consen 185 DFVLYIGDDRTDEDAFRAL 203 (235)
T ss_dssp --EEEEESSHHHHHHHHTT
T ss_pred ceeEEecCCCCCHHHHHHH
Confidence 5799999999999997644
No 206
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=57.92 E-value=3.5 Score=36.92 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=10.2
Q ss_pred CceEEEEcCCCCC
Q 016842 283 RTNVLLLGDHIGD 295 (381)
Q Consensus 283 r~nVI~IGDg~~D 295 (381)
..+.+||||..||
T Consensus 118 ~~~Sf~VGDaagr 130 (159)
T PF08645_consen 118 LANSFYVGDAAGR 130 (159)
T ss_dssp CCC-EEEESSCHC
T ss_pred ccceEEEeccCCC
Confidence 4689999999887
No 207
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=57.18 E-value=38 Score=30.87 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=54.3
Q ss_pred EEEEeCCccccccccCCCcc-----ccHH-HHHhccC------hhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHH
Q 016842 86 QVIADFDGTLTRYFINGSRG-----QSSH-GLLQQGN------PEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWG 153 (381)
Q Consensus 86 qVi~DFDgTIT~~~~~g~~~-----dts~-~il~~~~------~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~ 153 (381)
+|+||.|+||-.++.+-... .... .+.++.+ |+....+++|.++=..+-+...-...+.++
T Consensus 5 lvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~------- 77 (169)
T PF12689_consen 5 LVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWAR------- 77 (169)
T ss_dssp EEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHH-------
T ss_pred EEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHH-------
Confidence 68999999999986422210 0111 3333332 677778888887433333333222222222
Q ss_pred HHHHHHHhCCCC-----------------------HHHHHHHHHccCCcc-----cccHHHHHHHHHHCCCCEEEEecCh
Q 016842 154 KTHGLLIEGGLT-----------------------YDAIKKSVSNALIAF-----RDGVVKLFEFLEERDIPVLIFSAGL 205 (381)
Q Consensus 154 ~~~~Ll~~~glt-----------------------~~~i~e~v~~~~i~L-----rpG~~efl~~L~~~gIpv~I~SaG~ 205 (381)
++|...++. ...+.++.++.+++. -+.-..-.+..++.|+.++.+-.|.
T Consensus 78 ---~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Gl 154 (169)
T PF12689_consen 78 ---ELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGL 154 (169)
T ss_dssp ---HHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS-
T ss_pred ---HHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCCC
Confidence 223333344 344444444444333 3344445566667888888888887
Q ss_pred H-HHHHHHHHH
Q 016842 206 A-DIIEEVLRQ 215 (381)
Q Consensus 206 ~-~~Ie~vL~~ 215 (381)
. ...+.-|++
T Consensus 155 t~~~~~~gL~~ 165 (169)
T PF12689_consen 155 TWDEFERGLEK 165 (169)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 5 455555554
No 208
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=56.42 E-value=4.5 Score=38.87 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=30.5
Q ss_pred CcccccCCCCceEEEEcCCCCCcccccCCCccceeeeccCchH
Q 016842 274 NYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDN 316 (381)
Q Consensus 274 ~~~~~~l~~r~nVI~IGDg~~Dl~ma~gl~~d~v~aiGfLn~~ 316 (381)
++.|+++..-+.++-+|||.||+.|.+ -.|..|.++-||+.
T Consensus 200 l~~y~rl~~~r~t~~~GDg~nD~Pl~e--v~d~AfiV~~lnre 240 (274)
T COG3769 200 LETYRRLGGARTTLGLGDGPNDAPLLE--VMDYAFIVKGLNRE 240 (274)
T ss_pred HHHHHhcCceeEEEecCCCCCcccHHH--hhhhheeecccchh
Confidence 344555443335888999999999998 56888888888754
No 209
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=56.28 E-value=10 Score=34.67 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=24.3
Q ss_pred CCceEECChhHHHHHHHHHHhcCCCceEEEEeCCccccc
Q 016842 59 SKFTIKGDPQSLQNKISQIRMAGPSKLQVIADFDGTLTR 97 (381)
Q Consensus 59 ~~~v~i~d~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~ 97 (381)
.|++++++-..+--....+++.|.+ .||+|+|.|||.
T Consensus 18 ~P~l~V~si~~I~~~~~~Lk~~Gik--~li~DkDNTL~~ 54 (168)
T PF09419_consen 18 LPHLYVPSIRDIDFEANHLKKKGIK--ALIFDKDNTLTP 54 (168)
T ss_pred CCCEEcCChhhCCcchhhhhhcCce--EEEEcCCCCCCC
Confidence 5666666655443222236666765 468999999998
No 210
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.22 E-value=63 Score=32.54 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=56.9
Q ss_pred chhhhhhhhccCC-----C-CCCCccccCccccccccchhhhhhhccCCCceEE-CChhHHHHHHHHHHhcCCCceEEEE
Q 016842 17 HLANAISQQLHHF-----L-PSKYCCTSSPRVWNRCCSAQNKMENQDLSKFTIK-GDPQSLQNKISQIRMAGPSKLQVIA 89 (381)
Q Consensus 17 ~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i-~d~~~~~~kl~~~~~~g~~klqVi~ 89 (381)
-|+.-+.+|.|+. . |...-+...+++-. .|- ..|++.+.++.|.. -||+.+++||.++..
T Consensus 160 eLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL--~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~~~t---------- 226 (314)
T COG0180 160 ELTRDIARRFNHLYGEVFPLPEALISKVARLPGL--DGP-GKMSKSDPNSAIFLLDDPKTIRKKIKKAAT---------- 226 (314)
T ss_pred HHHHHHHHHHHhhcCCccCCccccccCCCcccCC--CCC-CcccccCCCCeeeccCCHHHHHHHHHHhcc----------
Confidence 3556666666643 2 22221221344443 344 78998866666655 567889999999865
Q ss_pred eCCc-cccccccCCCcc-ccHHHHHhccChhHHHHHHHHHHhhCCC
Q 016842 90 DFDG-TLTRYFINGSRG-QSSHGLLQQGNPEYDAKRQALYEYYHPL 133 (381)
Q Consensus 90 DFDg-TIT~~~~~g~~~-dts~~il~~~~~e~~~~~~~L~~~Y~pi 133 (381)
|+ |+.++...|++. ..-+.+..-+.+ .+...++++.|.-+
T Consensus 227 --d~~~~~~~~~~g~Pe~~~l~~~~~~~~~--~~~~~ei~~~~~~G 268 (314)
T COG0180 227 --DGPTLIEYRKGGKPEVCNLFEIYSAFFE--DDSILEIEAEYRGG 268 (314)
T ss_pred --CCCCccccCCCCCCCcchHHHHHHHhcC--CCcHHHHHHHHhcc
Confidence 55 677776655543 333555554442 22223777777643
No 211
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=55.04 E-value=23 Score=32.35 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=22.8
Q ss_pred CcccccHHHHHHHHHHCCCC--EEEEecCh
Q 016842 178 IAFRDGVVKLFEFLEERDIP--VLIFSAGL 205 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIp--v~I~SaG~ 205 (381)
-.+.|-+.+.++.|++.+.+ ++|+|.+.
T Consensus 58 ~~i~~~~~~~~~~l~~~~~~~~v~IvSNsa 87 (168)
T PF09419_consen 58 DEIPPEYAEWLNELKKQFGKDRVLIVSNSA 87 (168)
T ss_pred CcCCHHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 46677888889999988876 99999874
No 212
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=54.05 E-value=7.4 Score=34.83 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=11.2
Q ss_pred EEEEeCCccccc
Q 016842 86 QVIADFDGTLTR 97 (381)
Q Consensus 86 qVi~DFDgTIT~ 97 (381)
.|+||.|||||.
T Consensus 3 ~i~fDktGTLt~ 14 (215)
T PF00702_consen 3 AICFDKTGTLTQ 14 (215)
T ss_dssp EEEEECCTTTBE
T ss_pred EEEEecCCCccc
Confidence 589999999999
No 213
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=53.92 E-value=85 Score=33.73 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=49.3
Q ss_pred HHhCCCCHHHHHHHHHc--cCCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCC
Q 016842 159 LIEGGLTYDAIKKSVSN--ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKD 236 (381)
Q Consensus 159 l~~~glt~~~i~e~v~~--~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~Fded 236 (381)
+...|+..++++ +.+. .+.-+.+=-.|-++..+.-+ +.+++|+..+-++|+.|+.++|. ..|+.-++.. ..
T Consensus 109 v~f~Gl~~~~~~-v~ravLPkf~~~dv~~e~~~v~~~~~-~~~vv~~~PrvMve~Flkeyl~~----d~V~g~El~~-~~ 181 (525)
T PLN02588 109 LSFFGVKKESFR-AGKAVLPKYFLEDVGLEMFQVLKRGG-KRVGVSDLPQVMIDVFLRDYLEI----EVVVGRDMKM-VG 181 (525)
T ss_pred HhhcCCcHHHhh-hHHhhccHHHHhhcCHHHHHHHhhcC-cEEEEecCCHHHHHHHHHHhcCc----ceEeeeeEEE-ee
Confidence 456788888665 3331 00111111123334444434 67778888899999999999885 2688888877 46
Q ss_pred CcEEecC
Q 016842 237 GHLVSFK 243 (381)
Q Consensus 237 G~l~gf~ 243 (381)
|+.+|+-
T Consensus 182 g~~tG~~ 188 (525)
T PLN02588 182 GYYLGIM 188 (525)
T ss_pred eEEEEEE
Confidence 8888875
No 214
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=53.91 E-value=32 Score=32.48 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 181 RDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 181 rpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+...+.++.|+++|++++|+||=....+..++++. +.
T Consensus 22 ~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~ 59 (270)
T PRK10513 22 SPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKEL-HM 59 (270)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHh-CC
Confidence 334456778899999999999998888888888876 54
No 215
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=52.54 E-value=29 Score=30.61 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeee
Q 016842 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRM 231 (381)
Q Consensus 183 G~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m 231 (381)
+..++=+.|++.|++++|+.+.....+..++++. +. ..||+|.-
T Consensus 54 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~~----~~V~~~~~ 97 (165)
T PF00875_consen 54 SLADLQESLRKLGIPLLVLRGDPEEVLPELAKEY-GA----TAVYFNEE 97 (165)
T ss_dssp HHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHH-TE----SEEEEE--
T ss_pred HHHHHHHHHHhcCcceEEEecchHHHHHHHHHhc-Cc----CeeEeccc
Confidence 3445667788899999999999999998888877 53 27888864
No 216
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=52.42 E-value=20 Score=30.51 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=12.3
Q ss_pred CceEEEEcCCCCCccc
Q 016842 283 RTNVLLLGDHIGDLGM 298 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~m 298 (381)
..+++|+||+..|+.-
T Consensus 108 p~~~l~igDs~~n~~~ 123 (128)
T TIGR01681 108 PKSILFVDDRPDNNEE 123 (128)
T ss_pred cceEEEECCCHhHHHH
Confidence 3578999999888654
No 217
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=52.12 E-value=33 Score=34.32 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=27.5
Q ss_pred HHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 186 KLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 186 efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
+.++.|+++||+++++|+-...-++.++++. +.
T Consensus 25 ~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~L-gl 57 (302)
T PRK12702 25 QALAALERRSIPLVLYSLRTRAQLEHLCRQL-RL 57 (302)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-CC
Confidence 4667788999999999999888888888765 64
No 218
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=51.09 E-value=5.2 Score=36.41 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=30.4
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
..++|. =++.|.+.||.++|+|+=...+++.-.+.. |+
T Consensus 37 nv~DG~--Gik~l~~~Gi~vAIITGr~s~ive~Ra~~L-GI 74 (170)
T COG1778 37 NVRDGH--GIKLLLKSGIKVAIITGRDSPIVEKRAKDL-GI 74 (170)
T ss_pred eccCcH--HHHHHHHcCCeEEEEeCCCCHHHHHHHHHc-CC
Confidence 445555 356677899999999999999999998876 75
No 219
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=50.89 E-value=32 Score=29.88 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=36.4
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecChHH---------------HHHHHHHHhcCCCCCcceEEeee
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGLAD---------------IIEEVLRQKVHKSFKNVKIVSNR 230 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~~~---------------~Ie~vL~~~~g~~~~ni~IvSN~ 230 (381)
.+.+++.+.++.|+++|+.++++||=... .+...|+++ ++.+. +|+.-.
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~-~ipYd--~l~~~k 87 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQH-NVPYD--EIYVGK 87 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHc-CCCCc--eEEeCC
Confidence 57788999999999999999999976432 667788777 65442 454444
No 220
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=50.81 E-value=4.2 Score=36.82 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=16.4
Q ss_pred CceEEEEcCCCCCccccc
Q 016842 283 RTNVLLLGDHIGDLGMSD 300 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~ 300 (381)
...++++||+.||+.|+.
T Consensus 179 ~~~~~~~GD~~nD~~~~~ 196 (204)
T TIGR01484 179 RDEILAFGDSGNDEEMFE 196 (204)
T ss_pred HHHEEEEcCCHHHHHHHH
Confidence 467999999999999987
No 221
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=50.52 E-value=12 Score=38.24 Aligned_cols=53 Identities=13% Similarity=0.272 Sum_probs=40.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCC----CCcceEEeeeeEE
Q 016842 181 RDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKS----FKNVKIVSNRMVF 233 (381)
Q Consensus 181 rpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~----~~ni~IvSN~m~F 233 (381)
-|-...|++.|+++|.++.+++.+...+++.-++...|.. ++-+=|-||+-.|
T Consensus 242 ~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~F 298 (510)
T KOG2470|consen 242 NPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEF 298 (510)
T ss_pred cHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcc
Confidence 3456688999999999999999999999988887665532 3334566777666
No 222
>PRK05667 dnaG DNA primase; Validated
Probab=49.55 E-value=2.7e+02 Score=30.32 Aligned_cols=76 Identities=22% Similarity=0.395 Sum_probs=46.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHccCCcccc-cHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCC------cceEE
Q 016842 155 THGLLIEGGLTYDAIKKSVSNALIAFRD-GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFK------NVKIV 227 (381)
Q Consensus 155 ~~~Ll~~~glt~~~i~e~v~~~~i~Lrp-G~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~------ni~Iv 227 (381)
+.++|.+.|++.+.+.++ ++-.-| +...++++|.++|++. ..|... |.... --..|
T Consensus 133 a~~YL~~RGls~~~i~~f----~lGyap~~~~~L~~~l~~~~~~~------------~~l~~~-GL~~~~~~~~~~yd~F 195 (580)
T PRK05667 133 ARQYLYKRGLSEETIERF----GIGYAPDGWDALLKHLGGKGFSE------------KELEEA-GLLIKNEDGGGPYDRF 195 (580)
T ss_pred HHHHHHHcCCCHHHHHHh----CCccCCChHHHHHHHHHhcCCCH------------HHHHHC-CceEecCCCCCcchhc
Confidence 345677888888877665 344444 5577889999888763 112211 21100 01345
Q ss_pred eeeeEE---cCCCcEEecCCCcc
Q 016842 228 SNRMVF---DKDGHLVSFKGKTI 247 (381)
Q Consensus 228 SN~m~F---dedG~l~gf~~~~i 247 (381)
.|++.| |.+|+++||.|..+
T Consensus 196 r~RimfPI~d~~G~vigF~GR~l 218 (580)
T PRK05667 196 RNRIMFPIRDLRGRVIGFGGRVL 218 (580)
T ss_pred CCeEEEEEECCCCcEEEEEeeec
Confidence 677665 78899999998655
No 223
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=49.30 E-value=42 Score=30.75 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=30.2
Q ss_pred ccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
+.|...+.++.|+++|++++|+||=....+..++++. +.
T Consensus 21 i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~ 59 (230)
T PRK01158 21 LSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLI-GT 59 (230)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh-CC
Confidence 3344556677789999999999998888888888765 54
No 224
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=48.94 E-value=1.1e+02 Score=30.93 Aligned_cols=40 Identities=13% Similarity=-0.058 Sum_probs=26.8
Q ss_pred cCccccccccchhhhhhhccCCCceEECC-hhHHHHHHHHHHhcCC
Q 016842 38 SSPRVWNRCCSAQNKMENQDLSKFTIKGD-PQSLQNKISQIRMAGP 82 (381)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~d-~~~~~~kl~~~~~~g~ 82 (381)
+..++...+ ..|++.+.+ .|.+.| |+.+++||.++..++.
T Consensus 192 ~~~l~gLdg----~KMSKS~~n-~I~L~D~p~~I~kKI~ka~Td~~ 232 (332)
T PRK12556 192 GAILPGLDG----RKMSKSYGN-VIPLFAEQEKLRKLIFKIKTDSS 232 (332)
T ss_pred cccccCCCC----CCCCCCCCC-cccccCCHHHHHHHHHHhccCCC
Confidence 444554422 488876643 566665 7888999999887764
No 225
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=48.63 E-value=32 Score=31.70 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=36.3
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
+....|-+.+.++.++++|+.++|+|.+...-+..+.++. |+
T Consensus 44 ~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l-~v 85 (175)
T COG2179 44 NPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL-GV 85 (175)
T ss_pred CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc-CC
Confidence 4567788889999999999999999999998899888875 64
No 226
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=48.45 E-value=43 Score=30.49 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=30.1
Q ss_pred ccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcC
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVH 218 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g 218 (381)
+.+...+.++.|+++|++++++|+-....+..+++.. +
T Consensus 16 i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l-~ 53 (225)
T TIGR01482 16 INESALEAIRKAESVGIPVVLVTGNSVQFARALAKLI-G 53 (225)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh-C
Confidence 3444556778889999999999998888888888766 5
No 227
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=48.42 E-value=28 Score=32.58 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.7
Q ss_pred cCCCceEEEEeCCccccc
Q 016842 80 AGPSKLQVIADFDGTLTR 97 (381)
Q Consensus 80 ~g~~klqVi~DFDgTIT~ 97 (381)
.|...+.|-||.|-|+--
T Consensus 59 eG~~Pi~VsFDIDDTvLF 76 (237)
T COG3700 59 EGRPPIAVSFDIDDTVLF 76 (237)
T ss_pred cCCCCeeEeeccCCeeEe
Confidence 588889999999999875
No 228
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=47.17 E-value=7.6 Score=37.12 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=12.1
Q ss_pred ceEEEEeCCcccc
Q 016842 84 KLQVIADFDGTLT 96 (381)
Q Consensus 84 klqVi~DFDgTIT 96 (381)
+.+++|||||||+
T Consensus 2 ~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 2 PRLLASDLDGTLI 14 (247)
T ss_dssp SEEEEEETBTTTB
T ss_pred CEEEEEECCCCCc
Confidence 6789999999999
No 229
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=46.73 E-value=45 Score=31.32 Aligned_cols=47 Identities=13% Similarity=0.047 Sum_probs=33.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeee
Q 016842 181 RDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNR 230 (381)
Q Consensus 181 rpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~ 230 (381)
.|...+.++.|+++|++++|+||=....+..++++. +...+ -|.+|-
T Consensus 22 ~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l-~~~~~--~I~~NG 68 (272)
T PRK10530 22 LPESLEALARAREAGYKVIIVTGRHHVAIHPFYQAL-ALDTP--AICCNG 68 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc-CCCCC--EEEcCC
Confidence 334456777899999999999998888888888876 54221 355564
No 230
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=46.70 E-value=31 Score=31.11 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=30.5
Q ss_pred ccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHH
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQ 215 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~ 215 (381)
+.+...+.++.|+++|++++|+||--...++..++.
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh
Confidence 345666788889999999999999999889888876
No 231
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=46.61 E-value=8.7 Score=37.11 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=13.6
Q ss_pred ceEEEEeCCcccccc
Q 016842 84 KLQVIADFDGTLTRY 98 (381)
Q Consensus 84 klqVi~DFDgTIT~~ 98 (381)
++.|++||||||..+
T Consensus 14 ~~li~~D~DGTLl~~ 28 (266)
T PRK10187 14 NYAWFFDLDGTLAEI 28 (266)
T ss_pred CEEEEEecCCCCCCC
Confidence 689999999999984
No 232
>PRK10976 putative hydrolase; Provisional
Probab=46.00 E-value=65 Score=30.36 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 181 RDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 181 rpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+...+.++.|+++|++++|+||=....+..++++. +.
T Consensus 21 s~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~ 58 (266)
T PRK10976 21 SPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNL-EI 58 (266)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc-CC
Confidence 344556778899999999999998877788888765 54
No 233
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=45.64 E-value=1.3e+02 Score=30.32 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHhcCCCceEEEEeCCccccccccCCCccccHHHHHhccC-----hhHHHHHHHHHHhhCCCCCCCCCCH
Q 016842 67 PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN-----PEYDAKRQALYEYYHPLEFSPTVPL 141 (381)
Q Consensus 67 ~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~-----~e~~~~~~~L~~~Y~piE~d~~is~ 141 (381)
+..+.+.|+.|++.|.=..+|-+ -|+ ..|.+++..+ ..+...=.+|+++..---.|--++
T Consensus 70 saGlr~ii~~Li~~~~VD~iVtT--gan------------iehD~~~~lg~~~y~G~~~~dd~~Lr~~ginRIgd~~ip- 134 (316)
T PRK02301 70 PAGMRGIVSDLIRDGHIDVLVTT--GAN------------LTHDVIEAIGGHHHHGTAHAHDEELRDEGIDRIYDVYLP- 134 (316)
T ss_pred HHHHHHHHHHHHHcCCeeEEEcC--CCc------------hHHHHHHHcCCCeeccCCCCCHHHHHHcCCCccceeCCC-
Confidence 56778888888888765444432 222 2345555442 111112234444422111122233
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEE
Q 016842 142 EEKTKLMEEWWGKTHGLLIE-GGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLI 200 (381)
Q Consensus 142 eEk~~~M~Ew~~~~~~Ll~~-~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I 200 (381)
+|.+...++|.....+-+.+ ...+..++...+-+ .+.+ =..++.++.+++||+++
T Consensus 135 ~e~y~~~E~~i~~il~~~~~~~~~s~~e~i~~lGk---~i~~-e~Sil~~Ay~~~VPIf~ 190 (316)
T PRK02301 135 QEHFADFEEFLQDVFPGLEEEGTVSIRDLLTEIGR---DLDD-DSGILAAAYECDVPVYC 190 (316)
T ss_pred hHHHHHHHHHHHHHHHhhhhcCCcCHHHHHHHHHh---hccC-CCcHHHHHHHcCCCEEC
Confidence 57778888999888777655 56787777666543 2332 26799999999999864
No 234
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=45.38 E-value=51 Score=31.11 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeee
Q 016842 184 VVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRM 231 (381)
Q Consensus 184 ~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m 231 (381)
..+.++.|+++|++++|+|+-....+..++++. +. +.--|-+|-.
T Consensus 21 ~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~-~~--~~~~I~~NGa 65 (256)
T TIGR01486 21 AKEVLERLQELGIPVIPCTSKTAAEVEYLRKEL-GL--EDPFIVENGG 65 (256)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-CC--CCcEEEcCCe
Confidence 467888899999999999988888888888876 54 2224555643
No 235
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=43.85 E-value=2.2e+02 Score=28.53 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHhcCCCceEEEEeCCccccccccCCCccccHHHHHhccC----hhHHHHHHHHHHhhCCCCCCCCCCHH
Q 016842 67 PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN----PEYDAKRQALYEYYHPLEFSPTVPLE 142 (381)
Q Consensus 67 ~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~----~e~~~~~~~L~~~Y~piE~d~~is~e 142 (381)
|..+++.|+.|++.|.=...|.+ -|+| .|.+++..+ .++...=.+|+++..---.|--++ +
T Consensus 58 saGlr~ii~~Li~~g~Vd~ivtT--ganl------------~hD~~~~~g~~~~g~f~~dd~~Lr~~ginRI~dv~ip-~ 122 (301)
T TIGR00321 58 PSGMREIIAYLIQHGMIDALVTT--GANL------------EHDLIEALGPTHLGDFAVDDKKLREEGINRIGDVFVP-N 122 (301)
T ss_pred hhhHHHHHHHHHHcCCeeEEEeC--CCch------------HHHHHHHcCcccccCCCCChHHHHHcCCCccceecCC-H
Confidence 56788888888888875555433 2222 345555443 111112234444422111122233 5
Q ss_pred HHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEE
Q 016842 143 EKTKLMEEWWGKTHGLLIE--GGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLI 200 (381)
Q Consensus 143 Ek~~~M~Ew~~~~~~Ll~~--~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I 200 (381)
|.+...++|.....+-+.+ ...+..++...+-+ .+.+-=..++.++.++|||+++
T Consensus 123 e~y~~~E~~i~~i~~~~~~~~~~~s~~e~i~~lGk---~i~~~e~Sil~~Ayk~~VPIf~ 179 (301)
T TIGR00321 123 ENFEVFEEWLVEIFSEMLGEQPIITPSEFIDEIGK---RINDKRSSIRYAAYKRKIPIFC 179 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHh---hcCCccchHHHHHHHcCCCEEC
Confidence 7778888899888777643 24787777665543 3433126799999999999864
No 236
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=43.59 E-value=1e+02 Score=31.15 Aligned_cols=128 Identities=12% Similarity=0.080 Sum_probs=61.8
Q ss_pred hhhhhccCCCceEE-CChhHHHHHHHHHHhcCCCceEEEEeCCccccccccCCCc-cccHHHHHhccChhHHHHHHHHHH
Q 016842 51 NKMENQDLSKFTIK-GDPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSR-GQSSHGLLQQGNPEYDAKRQALYE 128 (381)
Q Consensus 51 ~~~~~~~~~~~v~i-~d~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~~g~~-~dts~~il~~~~~e~~~~~~~L~~ 128 (381)
..|++.+.+ .|.+ -+|+.+++||.+...++ + .++ ++..|.. ......++.-+.++. +...++.+
T Consensus 195 ~KMSKS~~~-~I~L~D~pe~I~kKI~~A~td~----------~-~~~-~~~~~~~~~~~l~~~~~~f~~~~-~~~e~l~~ 260 (333)
T PRK12282 195 AKMSKSLGN-AIYLSDDADTIKKKVMSMYTDP----------N-HIR-VEDPGKVEGNVVFTYLDAFDPDK-AEVAELKA 260 (333)
T ss_pred CcCCCCCCC-eeeeeCCHHHHHHHHHhCcCCC----------C-Ccc-CCCCCCCCcChHHHHHHHhCCCC-chHHHHHH
Confidence 578876654 4555 56788999998865543 1 122 1223332 245566666654222 34456677
Q ss_pred hhCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHccCCcccccHHHHHHHHHH
Q 016842 129 YYHPLEFSPTVPLEEK-TKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEE 193 (381)
Q Consensus 129 ~Y~piE~d~~is~eEk-~~~M~Ew~~~~~~Ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~ 193 (381)
.|...++.+ ..+.+. ...+.+......+-..+.--..+.+.+++..+.-.-|.-+.+.++..++
T Consensus 261 ~y~~g~~~~-~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~vl~~G~~ka~~~A~~~~~~v~~ 325 (333)
T PRK12282 261 HYQRGGLGD-VKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEILKAGSEKAREVAAQTLSEVKD 325 (333)
T ss_pred HHhcCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776655433 111111 1222232222221111111235556666665545555555555555544
No 237
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=42.37 E-value=55 Score=30.79 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=29.6
Q ss_pred cccccHHHHHHHHHHCCCCEEEEecCh---HHHHHHHHHHhcCC
Q 016842 179 AFRDGVVKLFEFLEERDIPVLIFSAGL---ADIIEEVLRQKVHK 219 (381)
Q Consensus 179 ~LrpG~~efl~~L~~~gIpv~I~SaG~---~~~Ie~vL~~~~g~ 219 (381)
.+-||+.++++.|+++|+++.++|.+. ...+...|.+++|.
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~ 57 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGV 57 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346699999999999999999999444 34454555654354
No 238
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=41.61 E-value=22 Score=40.07 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCcccccc
Q 016842 70 LQNKISQIRMAGPSKLQVIADFDGTLTRY 98 (381)
Q Consensus 70 ~~~kl~~~~~~g~~klqVi~DFDgTIT~~ 98 (381)
....+.++++ .++..+++||||||+.+
T Consensus 495 ~~~~~~~y~~--a~~rll~LDyDGTL~~~ 521 (797)
T PLN03063 495 EQDVIQQYSK--SNNRLLILGFYGTLTEP 521 (797)
T ss_pred HHHHHHHHHh--ccCeEEEEecCccccCC
Confidence 4444555554 44688999999999975
No 239
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=41.33 E-value=1.6e+02 Score=29.83 Aligned_cols=116 Identities=8% Similarity=0.069 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHhcCCCceEEEEeCCccccccccCCCccccHHHHHhccC-----hhHHHHHHHHHHhhCCCCCCCCCCH
Q 016842 67 PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN-----PEYDAKRQALYEYYHPLEFSPTVPL 141 (381)
Q Consensus 67 ~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~-----~e~~~~~~~L~~~Y~piE~d~~is~ 141 (381)
+..+...|+.|++.|.=...|-+ -|+| .|.+++..+ ..+...=.+|+++-.---.|--++
T Consensus 59 saGlr~~i~~Li~~g~VD~iVTT--gani------------~hD~~~~lg~~~y~g~f~~dd~~Lr~~ginRIgdv~ip- 123 (329)
T PRK00805 59 PAGMRKIIKWLIRNRYVDVLVST--GANI------------FHDIHEALGFKHYKGSHHVDDEELFKEGIDRIYDVFAY- 123 (329)
T ss_pred HHHHHHHHHHHHHcCCeeEEEeC--CCch------------HHHHHHHcCCCeeccCCCCCHHHHHHcCCCcccccccC-
Confidence 56788888899888875554433 2222 345555442 111112223443321111122233
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHccCCcccc-cHHHHHHHHHHCCCCEEE
Q 016842 142 EEKTKLMEEWWGKTHGLLIEG-GLTYDAIKKSVSNALIAFRD-GVVKLFEFLEERDIPVLI 200 (381)
Q Consensus 142 eEk~~~M~Ew~~~~~~Ll~~~-glt~~~i~e~v~~~~i~Lrp-G~~efl~~L~~~gIpv~I 200 (381)
+|.+..+++|.....+-+.+. ..+..++...+-+ .+.+ .=..++.++.+++||+++
T Consensus 124 ~e~y~~~E~~i~~il~~~~~~~~~s~~e~i~~lGk---~i~~~~~~Sil~~Ayk~~VPVf~ 181 (329)
T PRK00805 124 EEEFRKADNLIAEFAETLPGFKSYSSREFLYLLGK---WLNEKDIDSIVAAAYRANVPIFV 181 (329)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHH---hhcccCcchHHHHHHHcCCCEEc
Confidence 567788889999887776544 6888877666543 2322 125799999999999875
No 240
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=41.06 E-value=57 Score=30.97 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=30.7
Q ss_pred ccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
+.+...+.++.|+++|++++|+||=....+..++++. +.
T Consensus 20 i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~ 58 (272)
T PRK15126 20 LGEKTLSTLARLRERDITLTFATGRHVLEMQHILGAL-SL 58 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc-CC
Confidence 3344456777889999999999998888888888876 54
No 241
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=40.93 E-value=25 Score=40.42 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCceEEEEeCCccccccc
Q 016842 69 SLQNKISQIRMAGPSKLQVIADFDGTLTRYF 99 (381)
Q Consensus 69 ~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~ 99 (381)
.+...+.++.++ ++..+++||||||+.+.
T Consensus 578 ~~~~~~~~y~~a--~~RLlfLDyDGTLap~~ 606 (934)
T PLN03064 578 PPEDAIQRYLQS--NNRLLILGFNATLTEPV 606 (934)
T ss_pred CHHHHHHHHHhc--cceEEEEecCceeccCC
Confidence 345555555543 46889999999999973
No 242
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=40.79 E-value=50 Score=33.96 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeee
Q 016842 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNR 230 (381)
Q Consensus 183 G~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~ 230 (381)
++.+|=+.|++.|++++|..+...+++..++++. +. ..||+|.
T Consensus 62 sL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~-~~----~~V~~~~ 104 (429)
T TIGR02765 62 SLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKEL-GV----RTVFLHQ 104 (429)
T ss_pred HHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHh-CC----CEEEEec
Confidence 3445666688888888888887788888887766 43 2677773
No 243
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=40.26 E-value=18 Score=38.07 Aligned_cols=14 Identities=43% Similarity=0.695 Sum_probs=12.1
Q ss_pred eEEEEeCCcccccc
Q 016842 85 LQVIADFDGTLTRY 98 (381)
Q Consensus 85 lqVi~DFDgTIT~~ 98 (381)
-.||+|.|||||+.
T Consensus 376 kiVVsDiDGTITkS 389 (580)
T COG5083 376 KIVVSDIDGTITKS 389 (580)
T ss_pred cEEEEecCCcEEeh
Confidence 35999999999994
No 244
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=39.54 E-value=2e+02 Score=29.00 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHhcCCCceEEEEeCCccccccccCCCccccHHHHHhccC-----hhHHHHHHHHHHhhCCCCCCCCCCH
Q 016842 67 PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN-----PEYDAKRQALYEYYHPLEFSPTVPL 141 (381)
Q Consensus 67 ~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~-----~e~~~~~~~L~~~Y~piE~d~~is~ 141 (381)
|..++..|+.|++.|.=...|-+ -|+ ..|.+++..+ ..+...=.+|+++..---.|--++-
T Consensus 67 s~Glr~ii~~Li~~~~VD~iVtT--gan------------i~hD~~~~lg~~~y~G~~~~dd~~Lr~~GinRIgdv~ip~ 132 (312)
T PRK01221 67 STGLRGLIADLIKRGLFNVVITT--CGT------------LDHDIARSFGGVYYKGSFDIDDAMLKDLGIHRLGNVLIPV 132 (312)
T ss_pred HHHHHHHHHHHHHcCCeeEEEeC--CCc------------hHHHHHHHcCCCeEecCCCCChHHHHHcCCCcceeeccCh
Confidence 55678888888888875444432 222 2345555543 1111122234443211111222333
Q ss_pred HHHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEE
Q 016842 142 EEKTKLMEEWWGKTHGLLIE--GGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLI 200 (381)
Q Consensus 142 eEk~~~M~Ew~~~~~~Ll~~--~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I 200 (381)
++-.+..++|.....+-+.+ ...+..++...+-+ .+.+. ..++.++.+++||+++
T Consensus 133 e~y~~~~E~~i~~il~~~~~~~~~~s~~e~i~~lGk---~i~~e-~Sil~~Ay~~~VPVf~ 189 (312)
T PRK01221 133 ESYGPLIEKFVRKFLEELYKDKKEWSTYELLWEFGK---RINDE-NSILRAAYEKGVPVFV 189 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHh---hcCCc-CcHHHHHHHcCCCEEC
Confidence 33335577888877776654 44677777665543 44432 6799999999999864
No 245
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=39.45 E-value=1.2e+02 Score=30.41 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=23.5
Q ss_pred hhhhhccCCCceEECC-hhHHHHHHHHHHhcCC
Q 016842 51 NKMENQDLSKFTIKGD-PQSLQNKISQIRMAGP 82 (381)
Q Consensus 51 ~~~~~~~~~~~v~i~d-~~~~~~kl~~~~~~g~ 82 (381)
..|++.+.++.|.+.| |+.+++||.+...++-
T Consensus 191 ~KMSKS~~~s~I~L~D~~e~I~~KI~~a~td~~ 223 (328)
T TIGR00233 191 KKMSKSDPNSAIFLTDTPKQIKKKIRKAATDGG 223 (328)
T ss_pred CcCCCCCCCCeEeecCCHHHHHHHHHhcCCCCC
Confidence 5899777666777755 6779999998765543
No 246
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=39.38 E-value=1.5e+02 Score=33.06 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHh----hCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHccCCcccccHHHHHHHHH
Q 016842 118 EYDAKRQALYEY----YHPLEFSPTVPLEEK-TKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLE 192 (381)
Q Consensus 118 e~~~~~~~L~~~----Y~piE~d~~is~eEk-~~~M~Ew~~~~~~Ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~ 192 (381)
|..-++..+.+. |||.|+... ++ +--.-+.|..+.+.+. +.+++.+.-... ..|-.|+.|+...+.
T Consensus 619 E~A~~LEa~a~~~~~~~~~~~~~~~----~~~vld~~~~~~~~l~~~~--~~~~~~iA~~fh---~~la~~~~e~~~~~a 689 (750)
T COG0068 619 EAAMALEALADQSDGVDYPYEIKNE----DNQVLDLKELILGVLEDLL--KDEPEKIATKFH---NALAEGFAELAVELA 689 (750)
T ss_pred chhhhHHHHhhhcccCcccceeccC----CccEeeHHHHHHHHHHHhc--cCCHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 444455555555 788775543 22 1112245555554443 566776665554 478899999986665
Q ss_pred -HCCCCEEEEecChH--HHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcE
Q 016842 193 -ERDIPVLIFSAGLA--DIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHL 239 (381)
Q Consensus 193 -~~gIpv~I~SaG~~--~~Ie~vL~~~~g~~~~ni~IvSN~m~FdedG~l 239 (381)
+.||.-+++|+|.- .++-.-+...+.. .+.+++.+.-..-+||-+
T Consensus 690 ~~~gi~~V~lsGGVf~N~~l~~~~~~~l~~--~~f~~~~~~~~P~~DggI 737 (750)
T COG0068 690 KKYGINKVVLSGGVFQNRLLLERLAKYLKK--EGFRFLFHQEVPAGDGGI 737 (750)
T ss_pred HhcCccEEEeeCCeeecHHHHHHHHHHHHh--cCceEeeecccCCCCCce
Confidence 56899999999984 3333333333231 234777777666555544
No 247
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=39.30 E-value=53 Score=34.63 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=34.4
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
+.-.|.+..+|+.|+++|.++.++|++.-+++..+++..+|.
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~ 223 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGP 223 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGC
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCC
Confidence 556789999999999999999999999999999999988775
No 248
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=38.77 E-value=17 Score=31.49 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.1
Q ss_pred CceEEEEcCCCCCcccccCC
Q 016842 283 RTNVLLLGDHIGDLGMSDGL 302 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl 302 (381)
..+++||||+..|+.+|..+
T Consensus 118 ~~e~i~IGDs~~Di~~A~~~ 137 (147)
T TIGR01656 118 ASRSLVVGDRLRDLQAARNA 137 (147)
T ss_pred hHHEEEEcCCHHHHHHHHHC
Confidence 46799999999999999743
No 249
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=37.84 E-value=49 Score=36.37 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=43.7
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeE-EcCCCc
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMV-FDKDGH 238 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~-FdedG~ 238 (381)
-+.|||++.+||+++.+. +++.|.+=|-+.+...+++-. -|.=++|.++.. .|+++.
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~li----DP~~~lF~dRIisrde~~~ 256 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLI----DPEGKYFGDRIISRDESPF 256 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHh----CCCCccccceEEEecCCCc
Confidence 489999999999999965 999999999999999887643 244466666653 344443
No 250
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=37.27 E-value=17 Score=32.91 Aligned_cols=12 Identities=50% Similarity=0.714 Sum_probs=11.2
Q ss_pred EEEEeCCccccc
Q 016842 86 QVIADFDGTLTR 97 (381)
Q Consensus 86 qVi~DFDgTIT~ 97 (381)
.+|||+||++|.
T Consensus 9 ~~v~d~dGv~td 20 (169)
T TIGR02726 9 LVILDVDGVMTD 20 (169)
T ss_pred EEEEeCceeeEC
Confidence 689999999998
No 251
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=36.99 E-value=2.9e+02 Score=26.17 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=37.5
Q ss_pred eEECChhHHHHHHHHHHhcCCCceEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHh-hCCCCCCCCCC
Q 016842 62 TIKGDPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEY-YHPLEFSPTVP 140 (381)
Q Consensus 62 v~i~d~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~-Y~piE~d~~is 140 (381)
....||..+.+++. ..|++. ..++|.|+..-. ..-..+++ ++-+. ..|+.+++.+.
T Consensus 29 ~~~~dp~~~a~~~~---~~g~~~-l~ivDLd~~~g~--------~~n~~~i~-----------~i~~~~~~pv~vgGGir 85 (241)
T PRK14024 29 TSYGSPLDAALAWQ---RDGAEW-IHLVDLDAAFGR--------GSNRELLA-----------EVVGKLDVKVELSGGIR 85 (241)
T ss_pred eECCCHHHHHHHHH---HCCCCE-EEEEeccccCCC--------CccHHHHH-----------HHHHHcCCCEEEcCCCC
Confidence 34569999888755 578755 456899986321 11112222 22222 25666777776
Q ss_pred HHHHHHHHHH
Q 016842 141 LEEKTKLMEE 150 (381)
Q Consensus 141 ~eEk~~~M~E 150 (381)
..|.++.+.+
T Consensus 86 s~edv~~~l~ 95 (241)
T PRK14024 86 DDESLEAALA 95 (241)
T ss_pred CHHHHHHHHH
Confidence 6666665544
No 252
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=36.96 E-value=17 Score=31.91 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=16.2
Q ss_pred CceEEEEcCCCCCccccc
Q 016842 283 RTNVLLLGDHIGDLGMSD 300 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~ 300 (381)
..+++|+||+.+|+.|+.
T Consensus 92 ~~~~~~vGDs~~D~~~~~ 109 (154)
T TIGR01670 92 PENVAYIGDDLIDWPVME 109 (154)
T ss_pred HHHEEEECCCHHHHHHHH
Confidence 357999999999999988
No 253
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=36.54 E-value=65 Score=31.53 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=27.2
Q ss_pred hhhhhhhccCCCceEECC-hhHHHHHHHHHHhcCCC
Q 016842 49 AQNKMENQDLSKFTIKGD-PQSLQNKISQIRMAGPS 83 (381)
Q Consensus 49 ~~~~~~~~~~~~~v~i~d-~~~~~~kl~~~~~~g~~ 83 (381)
....|++.+.++.|.+.| |+.+++||.+...++..
T Consensus 188 ~~~KMSKS~~~~~I~L~d~~~~i~~KI~~a~td~~~ 223 (280)
T cd00806 188 PSKKMSKSDPNNAIFLTDSPKEIKKKIMKAATDGGR 223 (280)
T ss_pred CCCcccCCCCCCeEEeeCCHHHHHHHHHhccCCCCC
Confidence 446899776667888875 89999999998776554
No 254
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=36.46 E-value=19 Score=30.14 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=17.0
Q ss_pred CceEEEEcC-CCCCcccccCC
Q 016842 283 RTNVLLLGD-HIGDLGMSDGL 302 (381)
Q Consensus 283 r~nVI~IGD-g~~Dl~ma~gl 302 (381)
..+++|||| ..+|+.+|..+
T Consensus 103 ~~~~v~IGD~~~~Di~~A~~~ 123 (132)
T TIGR01662 103 PEESVYVGDQDLTDLQAAKRA 123 (132)
T ss_pred hhheEEEcCCCcccHHHHHHC
Confidence 467999999 79999999744
No 255
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=35.82 E-value=93 Score=31.12 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHc--------cCCcccccHHHHHHHHHHCCCCEEEEecChH
Q 016842 163 GLTYDAIKKSVSN--------ALIAFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (381)
Q Consensus 163 glt~~~i~e~v~~--------~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~ 206 (381)
+++++.+.+..+- ...-+.|.+.+++++++++|+.+.|.|.|..
T Consensus 118 ~v~~~~~~ea~~~~~v~iSl~GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 118 KVDREKFEEAMEPKHVAISLSGEPTLYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred CCCHHHhhhccCCCEEEEeCCccccchhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 5667777774221 3355788999999999999999999999964
No 256
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=35.69 E-value=91 Score=26.86 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=27.4
Q ss_pred ccccHHHHHHHHHHCCCCEEEEec------ChHHHHHHHHHHh
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSA------GLADIIEEVLRQK 216 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~Sa------G~~~~Ie~vL~~~ 216 (381)
=|||+.++++.++...+.++|+.. ...+++...|+.+
T Consensus 47 ~Rp~l~~ll~~i~~g~~d~lvV~~ldRl~R~~~d~~~~~l~~~ 89 (134)
T cd03769 47 KRKGLLKLLEDVLAGKVERVVITYKDRLARFGFELLEELFKAY 89 (134)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEeccHHHHhhHHHHHHHHHHC
Confidence 599999999999998888888763 2334555555554
No 257
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=35.53 E-value=49 Score=25.56 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEEeCCcccc
Q 016842 66 DPQSLQNKISQIRMAGPSKLQVIADFDGTLT 96 (381)
Q Consensus 66 d~~~~~~kl~~~~~~g~~klqVi~DFDgTIT 96 (381)
+-+.|.++|....+.|.. |+.||+|+-+
T Consensus 2 ~G~~~~~~i~~~l~~~~~---V~lDF~gv~~ 29 (74)
T PF14213_consen 2 DGERLRDEIEPALKEGEK---VVLDFEGVES 29 (74)
T ss_pred ChHHHHHHHHHHHhcCCe---EEEECCCccc
Confidence 345788888888888877 8999999933
No 258
>PHA02540 61 DNA primase; Provisional
Probab=35.50 E-value=4.9e+02 Score=26.46 Aligned_cols=20 Identities=40% Similarity=0.886 Sum_probs=15.0
Q ss_pred eeeEE---cCCCcEEecCCCccc
Q 016842 229 NRMVF---DKDGHLVSFKGKTIH 248 (381)
Q Consensus 229 N~m~F---dedG~l~gf~~~~ih 248 (381)
|++.| |.+|+++||.|..+.
T Consensus 172 ~RImFPI~d~~G~vigFgGR~l~ 194 (337)
T PHA02540 172 PRLVIPIFNKDGKIESFQGRALR 194 (337)
T ss_pred CeeEEEEECCCCCEEEEEeEECC
Confidence 55544 789999999986653
No 259
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=35.10 E-value=67 Score=32.23 Aligned_cols=66 Identities=24% Similarity=0.287 Sum_probs=47.5
Q ss_pred HHHHHHHHHCCCCEEEEecChHHHHHH---HHHHhcCCCCCcceEEeeeeEEcCCCcE-EecCCCccccCCCCccccc
Q 016842 185 VKLFEFLEERDIPVLIFSAGLADIIEE---VLRQKVHKSFKNVKIVSNRMVFDKDGHL-VSFKGKTIHSLNKNEHALD 258 (381)
Q Consensus 185 ~efl~~L~~~gIpv~I~SaG~~~~Ie~---vL~~~~g~~~~ni~IvSN~m~FdedG~l-~gf~~~~ih~~nK~~~~l~ 258 (381)
.+|++.++++++|++.-.-....++.. .|.+.+ .+...+.+.-+...+-|.+ +|.+| ..|++.+++
T Consensus 96 ~~l~~~a~~~~ipll~t~~~t~~~i~~l~~~L~~~l---a~~~~iHg~~v~V~G~GvLi~G~SG-----~GKSelALe 165 (308)
T PRK05428 96 PELLEAAKEAGIPLLRTPLSTTRLISKLTNYLDRKL---APRTSVHGVLVDIYGIGVLITGESG-----IGKSETALE 165 (308)
T ss_pred HHHHHHHHHcCCcEEEeCCcHHHHHHHHHHHHHHHh---hhcceeeeEEEEECCEEEEEEcCCC-----CCHHHHHHH
Confidence 468899999999999888777766544 334432 3556888888998877877 67664 567766654
No 260
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=34.82 E-value=16 Score=34.54 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=14.3
Q ss_pred CceEEEEeCCcccccc
Q 016842 83 SKLQVIADFDGTLTRY 98 (381)
Q Consensus 83 ~klqVi~DFDgTIT~~ 98 (381)
++..+++||||||+.+
T Consensus 2 ~~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEI 17 (244)
T ss_pred CcEEEEEecCccccCC
Confidence 5788999999999985
No 261
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=34.74 E-value=1.2e+02 Score=26.72 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=26.4
Q ss_pred ccccHHHHHHHHHHCCCCEEEEecChH-HHHHHHHH
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSAGLA-DIIEEVLR 214 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~SaG~~-~~Ie~vL~ 214 (381)
..+.+.++++.++++|+++.|.|++.. +..+.++.
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~ 108 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQ 108 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Confidence 346788999999999999999998753 34445543
No 262
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=33.63 E-value=2e+02 Score=29.17 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHhcCCCceEEEEeCCccccccccCCCccccHHHHHhccC----hhHHHHHHHHHHhhCCCCCCCCCCHH
Q 016842 67 PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN----PEYDAKRQALYEYYHPLEFSPTVPLE 142 (381)
Q Consensus 67 ~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~----~e~~~~~~~L~~~Y~piE~d~~is~e 142 (381)
+..+++.|+.|++.|.=..+|.+ -|+|. |.+++..+ +++...=.+|+++..---.|--++ +
T Consensus 79 saGlr~~i~~Li~~~~Vd~iVtT--ganle------------hDi~~~l~~~~~G~f~~dd~~Lr~~ginRIgnv~ip-~ 143 (334)
T PRK03971 79 SSGLREIIAYLVKEKKVDVIVTT--AGGVE------------EDFIKCLKPFILGEWDVDGAELREKGINRIGNIFVP-N 143 (334)
T ss_pred chhHHHHHHHHHHcCCeeEEEeC--CCchH------------HHHHHHhcccccCCCCCCHHHHHHcCCCccceeeeC-h
Confidence 56677888888887754444332 22222 23333322 222222234444321100111122 5
Q ss_pred HHHHHHHHHHHHHHHHHHh------CCCCHHHHHHHHHccCCccccc-----HHHHHHHHHHCCCCEEE
Q 016842 143 EKTKLMEEWWGKTHGLLIE------GGLTYDAIKKSVSNALIAFRDG-----VVKLFEFLEERDIPVLI 200 (381)
Q Consensus 143 Ek~~~M~Ew~~~~~~Ll~~------~glt~~~i~e~v~~~~i~LrpG-----~~efl~~L~~~gIpv~I 200 (381)
|.+...++|.....+-+.+ ...+..++...+-+ .+.+. =..++.++.++|||+++
T Consensus 144 e~y~~~E~~i~~il~~~~~~q~~~~~~~s~~e~i~~lGk---~i~~~~~~~~e~Sil~~Ayk~~VPIf~ 209 (334)
T PRK03971 144 DRYIEFEEYMYEFFEELLAKQREEGKIITASEFCYELGR---FMDEKLGKEKEKSILYWAYKNNIPIFC 209 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHH---HHhhhccCCccchHHHHHHHcCCCEEc
Confidence 5677888888877776632 34677776554433 23221 26799999999999875
No 263
>PLN02486 aminoacyl-tRNA ligase
Probab=33.24 E-value=1.7e+02 Score=30.23 Aligned_cols=84 Identities=19% Similarity=0.100 Sum_probs=49.6
Q ss_pred cCccccccccchhhhhhhccCCCceEECC-hhHHHHHHHH-HHhcCCCceEEEEeCCccccccccCCCcc--ccHHHHHh
Q 016842 38 SSPRVWNRCCSAQNKMENQDLSKFTIKGD-PQSLQNKISQ-IRMAGPSKLQVIADFDGTLTRYFINGSRG--QSSHGLLQ 113 (381)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~d-~~~~~~kl~~-~~~~g~~klqVi~DFDgTIT~~~~~g~~~--dts~~il~ 113 (381)
+..+|-..+ ....|++...++.|.+.| |+.+.+||.+ ...+|. -|+......|-.. ++.+.++.
T Consensus 253 ~~~lp~L~g--~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~----------~t~~~~~~~gg~p~v~~~~~~l~ 320 (383)
T PLN02486 253 SRFFPALQG--ESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQ----------DTVEEHRELGANLEVDIPWKYLN 320 (383)
T ss_pred cccccCCCC--CCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCC----------CcccccccCCCCCccchHHHHHH
Confidence 344554422 235888777777788886 7889999998 544443 2344433333222 45566666
Q ss_pred ccChhHHHHHHHHHHhhCCCC
Q 016842 114 QGNPEYDAKRQALYEYYHPLE 134 (381)
Q Consensus 114 ~~~~e~~~~~~~L~~~Y~piE 134 (381)
-+.++ .++++++.+.|..++
T Consensus 321 ~f~~d-d~~~eei~~~y~~G~ 340 (383)
T PLN02486 321 FFLED-DAELERIKKEYGSGR 340 (383)
T ss_pred HHcCC-chHHHHHHHHhccCC
Confidence 65421 245677888886544
No 264
>PTZ00174 phosphomannomutase; Provisional
Probab=33.13 E-value=26 Score=33.22 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=16.5
Q ss_pred CceEEEEcC----CCCCccccc
Q 016842 283 RTNVLLLGD----HIGDLGMSD 300 (381)
Q Consensus 283 r~nVI~IGD----g~~Dl~ma~ 300 (381)
..+|+.+|| |.||+.|..
T Consensus 200 ~~eviafGD~~~~~~NDieMl~ 221 (247)
T PTZ00174 200 FKEIHFFGDKTFEGGNDYEIYN 221 (247)
T ss_pred hhhEEEEcccCCCCCCcHhhhh
Confidence 468999999 999999987
No 265
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=33.13 E-value=87 Score=32.11 Aligned_cols=74 Identities=23% Similarity=0.206 Sum_probs=44.9
Q ss_pred hhhhhccCCCceEECC-hhHHHHHHHHHHhcCCCceEEEEeCCcccccccc-CCCc-cccHHHHHhccChhHHHHHHHHH
Q 016842 51 NKMENQDLSKFTIKGD-PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFI-NGSR-GQSSHGLLQQGNPEYDAKRQALY 127 (381)
Q Consensus 51 ~~~~~~~~~~~v~i~d-~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~-~g~~-~dts~~il~~~~~e~~~~~~~L~ 127 (381)
..|++.+.++.|.+.| |+.+++||.+...+|. .|+..+.. .|.+ .+..+.++.-+..+-.++++++.
T Consensus 250 ~KMSkS~~~s~I~L~D~p~~I~kKI~kA~Td~~----------~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~eei~ 319 (368)
T PRK12285 250 GKMSSSKPESAIYLTDDPETVKKKIMKALTGGR----------ATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIY 319 (368)
T ss_pred CcCCCCCCCCeeeccCCHHHHHHHHHhCcCCCC----------cccccccccCCCCCcchHHHHHHHHhcCCCccHHHHH
Confidence 5898777677888877 7789999998655443 34443322 3332 24555666654422224566777
Q ss_pred HhhCCCC
Q 016842 128 EYYHPLE 134 (381)
Q Consensus 128 ~~Y~piE 134 (381)
+.|..++
T Consensus 320 ~~y~~g~ 326 (368)
T PRK12285 320 EECRSGE 326 (368)
T ss_pred HHHhcCC
Confidence 7776543
No 266
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=33.09 E-value=1.2e+02 Score=30.15 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=30.1
Q ss_pred cCCcccccHHHHHHHHHHCCCCEEEEecCh---HHHHHHH
Q 016842 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGL---ADIIEEV 212 (381)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gIpv~I~SaG~---~~~Ie~v 212 (381)
...-++|.+.+++++++++|+.+.|.|.|. .+.++.+
T Consensus 62 GEPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L 101 (358)
T TIGR02109 62 GEPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDAL 101 (358)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHH
Confidence 346689999999999999999999999997 3455544
No 267
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=32.73 E-value=2e+02 Score=29.10 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEEecCh--HHHHHHHHHHhcCCC---CCcceE
Q 016842 152 WGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGL--ADIIEEVLRQKVHKS---FKNVKI 226 (381)
Q Consensus 152 ~~~~~~Ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~--~~~Ie~vL~~~~g~~---~~ni~I 226 (381)
..++...+..+.++.+++.+++++ -..++++...+.|+. +++.+.+ .++++..+++..|+. .+-++.
T Consensus 19 l~~a~~~~~~G~i~~ee~~~~~~~-------~i~~~i~~q~~~Gld-v~v~Ge~~r~Dmv~~F~e~l~G~~~~~~~~v~~ 90 (330)
T COG0620 19 LRKAREKWKKGEISEEEYEEILRE-------AIRRAIKDQEEAGLD-VLVDGEFERNDMVEYFAEKLDGVKFTQNGWVRS 90 (330)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHH-------HHHHHHHHHHhcCCc-EecCCceeecHHHHHHHHHcCCeeeccCCcEEE
Confidence 344444445677888888887764 367889999999999 4555555 489999999886753 122455
Q ss_pred Eee
Q 016842 227 VSN 229 (381)
Q Consensus 227 vSN 229 (381)
+.|
T Consensus 91 ~~~ 93 (330)
T COG0620 91 YGS 93 (330)
T ss_pred ecc
Confidence 555
No 268
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=31.47 E-value=81 Score=31.16 Aligned_cols=144 Identities=17% Similarity=0.250 Sum_probs=77.0
Q ss_pred cccccchhhhhhhc--cCCCceEECChhHHHHHH--HHHHhcCCC--ceEEEEeCCccccccccCCCccccHHHHHhccC
Q 016842 43 WNRCCSAQNKMENQ--DLSKFTIKGDPQSLQNKI--SQIRMAGPS--KLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN 116 (381)
Q Consensus 43 ~~~~~~~~~~~~~~--~~~~~v~i~d~~~~~~kl--~~~~~~g~~--klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~ 116 (381)
.+++||.....++- +....+ +.|+-+ .+| +++++.|.+ |+.|..|-|+- .. ...-.++++++.
T Consensus 85 ~~~~~~lL~a~dktgyd~t~~~--rlp~l~-~~isa~riK~~G~~avK~Lvy~~~D~~--e~------neqk~a~ierig 153 (306)
T COG3684 85 IAKSCALLLAYDKTGYDNTIPV--RLPDLL-RKISAKRIKEDGGDAVKFLVYYRSDED--EI------NEQKLAYIERIG 153 (306)
T ss_pred cccccceeeehhhhcCCCCCCc--cchhhh-hhhCHHHHHHhcccceEEEEEEcCCch--HH------hHHHHHHHHHHH
Confidence 37899999988855 444443 333333 333 257778887 78898888876 21 233457888877
Q ss_pred hhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHccCCcc-----cccHHHHHHH
Q 016842 117 PEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEW-WGKTHGLLIEGGLTYDAIKKSVSNALIAF-----RDGVVKLFEF 190 (381)
Q Consensus 117 ~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew-~~~~~~Ll~~~glt~~~i~e~v~~~~i~L-----rpG~~efl~~ 190 (381)
.+|.++ .|---..|+-.++.++-.+.......| ...+.+.+.+.|.. +++ -.+++ ++.+...++.
T Consensus 154 sec~ae--di~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~fsd~Gad------vlK-vevPvyveGe~~ea~~~f~~ 224 (306)
T COG3684 154 SECHAE--DLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEFSDSGAD------VLK-VEVPVYVEGEQEEAAAAFQR 224 (306)
T ss_pred HHhhhc--CCceeEeeeecCCCCCChHHHHhhchHHHHHHHHHhccCCCc------eEE-eecceeccCccHHHHHHHHH
Confidence 666554 222222334445555544222111111 01111122111111 010 12444 6666667777
Q ss_pred HHHC-CCCEEEEecChH
Q 016842 191 LEER-DIPVLIFSAGLA 206 (381)
Q Consensus 191 L~~~-gIpv~I~SaG~~ 206 (381)
+..+ +.|.+++|+|..
T Consensus 225 ~~~~~~lP~i~LSAGV~ 241 (306)
T COG3684 225 QNDHINLPWIYLSAGVS 241 (306)
T ss_pred hhcCCCCCeEEEecCcc
Confidence 6664 699999999986
No 269
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.44 E-value=3.3e+02 Score=27.55 Aligned_cols=79 Identities=23% Similarity=0.188 Sum_probs=52.1
Q ss_pred ccchhhhhhhccCCCceEECC-hhHHHHHHHHHHhcCCCceEEEEeCCcccccccc-CCCc-cccHHHHHhccChhHHHH
Q 016842 46 CCSAQNKMENQDLSKFTIKGD-PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFI-NGSR-GQSSHGLLQQGNPEYDAK 122 (381)
Q Consensus 46 ~~~~~~~~~~~~~~~~v~i~d-~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~-~g~~-~dts~~il~~~~~e~~~~ 122 (381)
-=|.+..|+..+.++.+++.| +....+||++-.-.|-. -||-.... .|.. +|.++..|.-+.+ -..+
T Consensus 272 LqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr---------~tiEeHRe~GGn~dVDV~~~YLsFFld-DD~k 341 (397)
T KOG2145|consen 272 LQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGR---------DTIEEHRELGGNPDVDVSFQYLSFFLD-DDDK 341 (397)
T ss_pred hhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCc---------chHHHHHHhCCCCcceehHHHHHHHhc-cHHH
Confidence 457889999999999999988 45677777765433322 14444433 3332 4677777776553 3367
Q ss_pred HHHHHHhhCCCC
Q 016842 123 RQALYEYYHPLE 134 (381)
Q Consensus 123 ~~~L~~~Y~piE 134 (381)
+++++..|..+|
T Consensus 342 Leq~r~~Y~~G~ 353 (397)
T KOG2145|consen 342 LEQIRKDYTSGE 353 (397)
T ss_pred HHHHHhhccccc
Confidence 778888887655
No 270
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.
Probab=30.03 E-value=5.4e+02 Score=25.26 Aligned_cols=45 Identities=18% Similarity=0.108 Sum_probs=28.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeee
Q 016842 181 RDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNR 230 (381)
Q Consensus 181 rpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~ 230 (381)
.+-+.++.+.|+..|||++++- +-.+-.-..|.+. |. -.-|+|+.
T Consensus 127 ~~~~~~~~~lL~~~gi~~i~ap-~EAdaq~a~l~~~-g~---v~~i~S~D 171 (316)
T cd00128 127 PQMIEEAKELLRLMGIPYIVAP-YEAEAQCAYLAKK-GL---VDAIITED 171 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEECC-cCHHHHHHHHHhC-CC---eeEEEecC
Confidence 3445667788899999999754 4444444445554 42 12688874
No 271
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=29.67 E-value=24 Score=30.45 Aligned_cols=76 Identities=28% Similarity=0.472 Sum_probs=40.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHccCCcccccH-HHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCc-----ceEEe
Q 016842 155 THGLLIEGGLTYDAIKKSVSNALIAFRDGV-VKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKN-----VKIVS 228 (381)
Q Consensus 155 ~~~Ll~~~glt~~~i~e~v~~~~i~LrpG~-~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~n-----i~IvS 228 (381)
+.+.|.+.|++.+.+.++ ++-.-|+- ..++++|++++++ ...|.+. |+...+ ...+.
T Consensus 14 a~~YL~~Rgl~~e~i~~F----~lGyap~~~~~l~~~l~~~~~~------------~~~l~~~-GL~~~~~~~~~~d~F~ 76 (128)
T PF08275_consen 14 ALEYLKKRGLSDETIKKF----QLGYAPGNWDSLLEYLKKKGFS------------LEELLEA-GLIRKNENGGYYDFFR 76 (128)
T ss_dssp HHHHHHHTT--HHHHHHT----T-EEE-SCSCHHHHHHCCCCHH------------HHHHCCT-TCEECCTTTEEEETTT
T ss_pred HHHHHHHcCCCHHHHHHh----CCCcccCcHHHHHHHHHhcccc------------HHHHHHC-CCcEEcCCCCcccccC
Confidence 455566778998877765 34455543 5677777766532 1233332 331111 23456
Q ss_pred eeeEE---cCCCcEEecCCCcc
Q 016842 229 NRMVF---DKDGHLVSFKGKTI 247 (381)
Q Consensus 229 N~m~F---dedG~l~gf~~~~i 247 (381)
|++.| |..|+++||.|..+
T Consensus 77 ~RiifPI~d~~G~vvgF~gR~l 98 (128)
T PF08275_consen 77 GRIIFPIRDERGRVVGFGGRRL 98 (128)
T ss_dssp TEEEEEEE-TTS-EEEEEEEES
T ss_pred CeEEEEEEcCCCCEEEEecccC
Confidence 77655 88999999998665
No 272
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.60 E-value=92 Score=32.38 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=24.9
Q ss_pred HHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeee
Q 016842 186 KLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNR 230 (381)
Q Consensus 186 efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~ 230 (381)
+|=+.|++.|++++|+.+....++..++++. +. ..||+|.
T Consensus 82 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~i----~~V~~~~ 121 (454)
T TIGR00591 82 EVANECERLIIPFHLLDGPPKELLPYFVDLH-AA----AAVVTDF 121 (454)
T ss_pred HHHHHHHHcCCceEEeecChHHHHHHHHHHc-CC----CEEEEec
Confidence 3445566677777777766666776666654 32 1566665
No 273
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=29.37 E-value=34 Score=30.54 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=17.3
Q ss_pred CceEEEEcCCCCCcccccCC
Q 016842 283 RTNVLLLGDHIGDLGMSDGL 302 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl 302 (381)
..++++|||+.+|+.+|..+
T Consensus 120 ~~~~~~VgDs~~Di~~A~~a 139 (181)
T PRK08942 120 LAGSPMVGDSLRDLQAAAAA 139 (181)
T ss_pred hhhEEEEeCCHHHHHHHHHC
Confidence 46899999999999999844
No 274
>PLN02423 phosphomannomutase
Probab=29.21 E-value=31 Score=32.83 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=17.0
Q ss_pred CCceEEEEcC----CCCCccccc
Q 016842 282 NRTNVLLLGD----HIGDLGMSD 300 (381)
Q Consensus 282 ~r~nVI~IGD----g~~Dl~ma~ 300 (381)
+...++.+|| +.||++|..
T Consensus 199 ~~~e~~aFGD~~~~~~ND~eMl~ 221 (245)
T PLN02423 199 DFDEIHFFGDKTYEGGNDHEIFE 221 (245)
T ss_pred CcCeEEEEeccCCCCCCcHHHHh
Confidence 4679999999 899999986
No 275
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=29.19 E-value=29 Score=30.90 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=18.8
Q ss_pred CceEEEEcCCCCCcccccCCCccc
Q 016842 283 RTNVLLLGDHIGDLGMSDGLKYET 306 (381)
Q Consensus 283 r~nVI~IGDg~~Dl~ma~gl~~d~ 306 (381)
..++++|||+.+|+.+|..+....
T Consensus 123 ~~~~v~VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 123 MAQSYMVGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred hhhEEEEcCCHHHHHHHHHCCCcE
Confidence 467999999999999998443333
No 276
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=29.15 E-value=85 Score=33.36 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=53.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH--HHHccCCcccccHHHHHHHHHHCCCCEEEEecChHHHH
Q 016842 132 PLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKK--SVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADII 209 (381)
Q Consensus 132 piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~glt~~~i~e--~v~~~~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~I 209 (381)
|..-+..|..+.--+.+.+|+++ .|++++++.. ++-...-.=+..+.+.++.|.+.-=.++|+|||.+ .
T Consensus 53 Pl~~~~~ID~~al~~iv~~eY~~-------Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPd--L 123 (473)
T PF06277_consen 53 PLLSQTEIDAEALKEIVEEEYRK-------AGITPEDIDTGAVIITGETARKENAREVLHALSGFAGDFVVATAGPD--L 123 (473)
T ss_pred CCCCCCccCHHHHHHHHHHHHHH-------cCCCHHHCccccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCC--H
Confidence 44444455554444555567764 4899999875 33334455678999999999999889999999975 7
Q ss_pred HHHHHHh
Q 016842 210 EEVLRQK 216 (381)
Q Consensus 210 e~vL~~~ 216 (381)
|.+|...
T Consensus 124 EsiiAgk 130 (473)
T PF06277_consen 124 ESIIAGK 130 (473)
T ss_pred HHHHhcc
Confidence 7777654
No 277
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=29.06 E-value=2.4e+02 Score=29.43 Aligned_cols=136 Identities=11% Similarity=-0.051 Sum_probs=64.1
Q ss_pred cCccccccccchhhhhhhccCCCceEECC-hhHHHHHHHHHHhcCCCceEEEEeCCccccccccCCCcc-ccHHHHHhcc
Q 016842 38 SSPRVWNRCCSAQNKMENQDLSKFTIKGD-PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRG-QSSHGLLQQG 115 (381)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~d-~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~~g~~~-dts~~il~~~ 115 (381)
..+++-... ..|++... +.|.+-| |+.+.+||.++.. |-..... ...|.+. .....++.-+
T Consensus 254 ~~~I~gLdg----~KMSKS~~-n~I~L~Ds~~~I~kKI~~a~T----------Ds~~~~~--~~~g~Pe~~nl~~i~~~~ 316 (398)
T PRK12283 254 ASKMPGLDG----QKMSKSYG-NTIGLREDPESVTKKIRTMPT----------DPARVRR--TDPGDPEKCPVWQLHQVY 316 (398)
T ss_pred CCcccCCCC----CcCCCCCC-CeeeCcCCHHHHHHHHHhCCC----------CCccccc--CCCCCCCcCHHHHHHHHh
Confidence 455554422 58987654 4677766 9999999998744 3222111 1234331 2334454444
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHccCCcccccHHHHHHHHHH
Q 016842 116 NPEYDAKRQALYEYYHPLEFSPTVPLEEK-TKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEE 193 (381)
Q Consensus 116 ~~e~~~~~~~L~~~Y~piE~d~~is~eEk-~~~M~Ew~~~~~~Ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~ 193 (381)
..+ +...++.+.|....+.- -...+. +..+.+|.....+-..+.--.++.+.++++...-.-|.=+.+.++..++
T Consensus 317 ~~~--~~~~~i~~~~~~g~~~~-g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~~kA~~~a~~t~~~v~~ 392 (398)
T PRK12283 317 SDE--ETKEWVQKGCRSAGIGC-LECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVRE 392 (398)
T ss_pred CCC--hHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 311 22345555554322100 011111 2344455554444333332345556666555444444444455544443
No 278
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=28.24 E-value=2.2e+02 Score=29.50 Aligned_cols=76 Identities=25% Similarity=0.458 Sum_probs=46.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHccCCccccc-HHHHHHHHHHC-CCCEEEEecChHHHHHHHHHHhcCCCCC-----cceEE
Q 016842 155 THGLLIEGGLTYDAIKKSVSNALIAFRDG-VVKLFEFLEER-DIPVLIFSAGLADIIEEVLRQKVHKSFK-----NVKIV 227 (381)
Q Consensus 155 ~~~Ll~~~glt~~~i~e~v~~~~i~LrpG-~~efl~~L~~~-gIpv~I~SaG~~~~Ie~vL~~~~g~~~~-----ni~Iv 227 (381)
+.++|.+.|++.+.+.++ ++-.-|+ ...+.++|.++ |++. ..|... |.... --..|
T Consensus 137 a~~YL~~RGis~e~i~~f----~lGyap~~~~~l~~~l~~k~~~~~------------~~l~~~-Gl~~~~~~g~~~d~F 199 (415)
T TIGR01391 137 ALDYLQSRGLSDETIDRF----ELGYAPNNWDFLFDFLQNKKGFDL------------ELLAEA-GLLVKKENGKYYDRF 199 (415)
T ss_pred HHHHHHHcCCCHHHHHHc----CCCCCCCcHHHHHHHHHhccCCCH------------HHHHHC-CCeEECCCCCeeeec
Confidence 356777889998877765 3455554 46678899888 7641 122222 32100 01345
Q ss_pred eeeeEE---cCCCcEEecCCCcc
Q 016842 228 SNRMVF---DKDGHLVSFKGKTI 247 (381)
Q Consensus 228 SN~m~F---dedG~l~gf~~~~i 247 (381)
-|++.| |.+|+++||.+..+
T Consensus 200 r~RiifPi~d~~G~vvgf~gR~~ 222 (415)
T TIGR01391 200 RNRIMFPIHDPKGRVVGFGGRAL 222 (415)
T ss_pred CCeEEEEEECCCCCEEEEEeeec
Confidence 566554 78899999998655
No 279
>PTZ00174 phosphomannomutase; Provisional
Probab=27.39 E-value=89 Score=29.50 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=26.2
Q ss_pred ccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHH
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLR 214 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~ 214 (381)
+.|...+.++.++++|+.++|+||-...-+...++
T Consensus 23 is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 23 ITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 34445567788999999999999987665655554
No 280
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.13 E-value=3.9e+02 Score=25.04 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=59.6
Q ss_pred CceEECChhHHHHHHHHHHhcCCCceEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCC-CCC-CC
Q 016842 60 KFTIKGDPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHP-LEF-SP 137 (381)
Q Consensus 60 ~~v~i~d~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~p-iE~-d~ 137 (381)
+-++..+++...+..+.++++|..-+-| |++. |+..+.++++.++| | .-+ .+
T Consensus 8 ~Vir~~~~~~a~~ia~al~~gGi~~iEi------t~~t-------------------p~a~~~I~~l~~~~-~~~~vGAG 61 (201)
T PRK06015 8 PVLLIDDVEHAVPLARALAAGGLPAIEI------TLRT-------------------PAALDAIRAVAAEV-EEAIVGAG 61 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCEEEE------eCCC-------------------ccHHHHHHHHHHHC-CCCEEeeE
Confidence 3467778999999999999999998766 3333 33334445555555 3 100 01
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHc-cCCcccccH-HHHHHHHHHCCCCEEEEecChHHHH
Q 016842 138 TVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSN-ALIAFRDGV-VKLFEFLEERDIPVLIFSAGLADII 209 (381)
Q Consensus 138 ~is~eEk~~~M~Ew~~~~~~Ll~~~glt~~~i~e~v~~-~~i~LrpG~-~efl~~L~~~gIpv~I~SaG~~~~I 209 (381)
++ ++.++.++.++. .+.-+.|++ .+++++++++|+|++==-.+..++.
T Consensus 62 TV------------------------l~~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i~~iPG~~TptEi~ 111 (201)
T PRK06015 62 TI------------------------LNAKQFEDAAKAGSRFIVSPGTTQELLAAANDSDVPLLPGAATPSEVM 111 (201)
T ss_pred eC------------------------cCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHH
Confidence 11 345556655543 345566665 4667888888877764333444433
No 281
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=27.05 E-value=1.1e+02 Score=32.10 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=18.8
Q ss_pred HHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 186 KLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 186 efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
+|=+.|++.|++++|+.+-..+++..++++.
T Consensus 59 ~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~ 89 (471)
T TIGR03556 59 ELQQRYQQAGSQLLILQGDPVQLIPQLAQQL 89 (471)
T ss_pred HHHHHHHHCCCCeEEEECCHHHHHHHHHHHc
Confidence 3445566666677666666666666665554
No 282
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=26.87 E-value=1.2e+02 Score=27.18 Aligned_cols=44 Identities=16% Similarity=0.410 Sum_probs=31.2
Q ss_pred HHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEee
Q 016842 184 VVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSN 229 (381)
Q Consensus 184 ~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN 229 (381)
+.++++.+.+++.+++++ +|-...++.+.++. ...+|++.|+..
T Consensus 35 ~~~ll~~~~~~~~~v~ll-G~~~~~~~~~~~~l-~~~yp~l~i~g~ 78 (171)
T cd06533 35 MPALLELAAQKGLRVFLL-GAKPEVLEKAAERL-RARYPGLKIVGY 78 (171)
T ss_pred HHHHHHHHHHcCCeEEEE-CCCHHHHHHHHHHH-HHHCCCcEEEEe
Confidence 567888999999999999 55555666654433 223788888763
No 283
>COG4996 Predicted phosphatase [General function prediction only]
Probab=26.44 E-value=98 Score=27.68 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=37.2
Q ss_pred CCcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCC
Q 016842 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (381)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~ 219 (381)
.+.|+|.+++++++++..|.-+..+|=.+.+..-.+|+.. +.
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral-~~ 80 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRAL-DL 80 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHh-ch
Confidence 4789999999999999999999999988888888888876 53
No 284
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.07 E-value=2.1e+02 Score=27.42 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=43.2
Q ss_pred CceEECChhHHHHHHHHHHhcCCCceEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCCCCCCCCC
Q 016842 60 KFTIKGDPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTV 139 (381)
Q Consensus 60 ~~v~i~d~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~piE~d~~i 139 (381)
..++..||..+.+.++ ..|++.+ .+.|.|+++... +.-..+++ ++-+...|+++++-+
T Consensus 25 ~~~~~~dP~~~A~~~~---~~ga~~l-hivDLd~a~~g~-------~~n~~~i~-----------~i~~~~~~v~vGGGI 82 (241)
T PRK14114 25 TIFYEKDPAELVEKLI---EEGFTLI-HVVDLSKAIENS-------VENLPVLE-----------KLSEFAEHIQIGGGI 82 (241)
T ss_pred ceEECCCHHHHHHHHH---HCCCCEE-EEEECCCcccCC-------cchHHHHH-----------HHHhhcCcEEEecCC
Confidence 4477889999998866 5777765 458999999762 33333333 222222477888877
Q ss_pred CHHHHHHHH
Q 016842 140 PLEEKTKLM 148 (381)
Q Consensus 140 s~eEk~~~M 148 (381)
...|.++.+
T Consensus 83 rs~e~~~~~ 91 (241)
T PRK14114 83 RSLDYAEKL 91 (241)
T ss_pred CCHHHHHHH
Confidence 776655543
No 285
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=25.81 E-value=50 Score=33.69 Aligned_cols=47 Identities=19% Similarity=-0.016 Sum_probs=25.3
Q ss_pred ceEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHhhCC
Q 016842 84 KLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHP 132 (381)
Q Consensus 84 klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~Y~p 132 (381)
+-.+++|+||||+.--.+....++...+ ..-|+..+.+..|.++-++
T Consensus 2 ~k~l~lDrDgtl~~~~~~~y~~~~~~~~--~l~pGV~e~L~~Lk~~G~k 48 (354)
T PRK05446 2 QKILFIDRDGTLIEEPPTDFQVDSLDKL--AFEPGVIPALLKLQKAGYK 48 (354)
T ss_pred CcEEEEeCCCCccCCCCccccccCcccc--eECcCHHHHHHHHHhCCCe
Confidence 3468999999999921101000110000 0116677777777776555
No 286
>PLN02886 aminoacyl-tRNA ligase
Probab=25.81 E-value=2.2e+02 Score=29.54 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=24.5
Q ss_pred hhhhhhccC--CCceEECC-hhHHHHHHHHHHhcCCC
Q 016842 50 QNKMENQDL--SKFTIKGD-PQSLQNKISQIRMAGPS 83 (381)
Q Consensus 50 ~~~~~~~~~--~~~v~i~d-~~~~~~kl~~~~~~g~~ 83 (381)
...|++.+. ++.|.+.| |+.+++||.++..++..
T Consensus 249 ~~KMSKS~p~~~s~I~L~Ds~e~I~kKI~~a~TD~~~ 285 (389)
T PLN02886 249 TSKMSKSAPSDQSRINLLDPPDVIANKIKRCKTDSFP 285 (389)
T ss_pred CCcCCCCCCCCCCeEEecCCHHHHHHHHhcCCCCCCC
Confidence 357886643 57888888 67889999987655443
No 287
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=25.58 E-value=30 Score=33.93 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=41.9
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeE
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMV 232 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~m~ 232 (381)
+.-|||+.+|++..-+. +.++|++||...+..+++... . +.-+|++.++.
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~D~L-D---~~~~i~~~Rly 179 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLLDIL-D---PDRKIISHRLY 179 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHHHHc-c---CCCCeeeeeec
Confidence 67799999999998887 899999999999999999865 3 22378888765
No 288
>PRK10444 UMP phosphatase; Provisional
Probab=25.44 E-value=31 Score=33.02 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=19.9
Q ss_pred CCceEEEEcCCC-CCcccccCCCccce
Q 016842 282 NRTNVLLLGDHI-GDLGMSDGLKYETR 307 (381)
Q Consensus 282 ~r~nVI~IGDg~-~Dl~ma~gl~~d~v 307 (381)
+..++++|||+. +|+.+|.....+.+
T Consensus 190 ~~~~~v~IGD~~~tDi~~A~~~G~~~v 216 (248)
T PRK10444 190 HSEETVIVGDNLRTDILAGFQAGLETI 216 (248)
T ss_pred CcccEEEECCCcHHHHHHHHHcCCCEE
Confidence 357899999997 99999874444444
No 289
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=25.37 E-value=1.8e+02 Score=27.31 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=26.0
Q ss_pred ccccH-HHHHHHHHHCCCCEEEEecChH--HHHHHHH
Q 016842 180 FRDGV-VKLFEFLEERDIPVLIFSAGLA--DIIEEVL 213 (381)
Q Consensus 180 LrpG~-~efl~~L~~~gIpv~I~SaG~~--~~Ie~vL 213 (381)
+-+.| .++++.+++.|+.++|-|+|.. ..++.++
T Consensus 51 lq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~ 87 (213)
T PRK10076 51 MQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLA 87 (213)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHH
Confidence 44554 7999999999999999999975 3444443
No 290
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=24.50 E-value=75 Score=31.47 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=31.4
Q ss_pred CcccccHHHHHHHHHHC----CCCEEEEecCh----HHHHHHHHHHhcCCC
Q 016842 178 IAFRDGVVKLFEFLEER----DIPVLIFSAGL----ADIIEEVLRQKVHKS 220 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~----gIpv~I~SaG~----~~~Ie~vL~~~~g~~ 220 (381)
-.+-||+.|+++.|+++ |+|+.++|.+- ..+.+.++++. |+.
T Consensus 15 ~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~l-G~~ 64 (321)
T TIGR01456 15 KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLL-GVD 64 (321)
T ss_pred ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHc-CCC
Confidence 35689999999999998 99999999654 34455544554 653
No 291
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=23.70 E-value=3e+02 Score=27.73 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=47.0
Q ss_pred HhCCCCHHHHHHHHHccCCcccccHHHHHHHHHHCC-CCEEEEecChHHH-HHHHHHHhcCCCCCcceEEee
Q 016842 160 IEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERD-IPVLIFSAGLADI-IEEVLRQKVHKSFKNVKIVSN 229 (381)
Q Consensus 160 ~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~g-Ipv~I~SaG~~~~-Ie~vL~~~~g~~~~ni~IvSN 229 (381)
...|+|+.+|.+-+. -=|.-+..+++.+++.| |++-|-+.....+ ++.-|++..|. +...|+-+
T Consensus 23 Y~~gltQ~eIA~~Lg----iSR~~v~rlL~~Ar~~GiV~I~i~~~~~~~~~Le~~L~~~fgL--~~a~VVp~ 88 (321)
T COG2390 23 YVEGLTQSEIAERLG----ISRATVSRLLAKAREEGIVKISINSPVEGCLELEQQLKERFGL--KEAIVVPS 88 (321)
T ss_pred HhcCCCHHHHHHHhC----CCHHHHHHHHHHHHHCCeEEEEeCCCCcchHHHHHHHHHhcCC--CeEEEEcC
Confidence 456999999998774 33778889999999999 5666665555544 77888887775 44566665
No 292
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=23.56 E-value=70 Score=28.51 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.1
Q ss_pred ccccHHHHHHHHHHCCCCEEEEe
Q 016842 180 FRDGVVKLFEFLEERDIPVLIFS 202 (381)
Q Consensus 180 LrpG~~efl~~L~~~gIpv~I~S 202 (381)
+.||+.+.|+.|++.|+.++|+|
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvT 52 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVT 52 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEE
T ss_pred cchhHHHHHHHHHhcCCeEEEEe
Confidence 44578899999999999999999
No 293
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=23.39 E-value=1.3e+02 Score=19.71 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHc
Q 016842 150 EWWGKTHGLLIEGGLTYDAIKKSVSN 175 (381)
Q Consensus 150 Ew~~~~~~Ll~~~glt~~~i~e~v~~ 175 (381)
||..-.. -..+.|+|++++.+++..
T Consensus 4 EW~~Li~-eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 4 EWVELIK-EAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHH-HHHHTT--HHHHHHHHHH
T ss_pred HHHHHHH-HHHHcCCCHHHHHHHHHh
Confidence 5665433 334689999999999863
No 294
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=22.32 E-value=53 Score=36.41 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=28.8
Q ss_pred ccccHHHHHHHHHHC-CCCEEEEecChHHHHHHHHHH
Q 016842 180 FRDGVVKLFEFLEER-DIPVLIFSAGLADIIEEVLRQ 215 (381)
Q Consensus 180 LrpG~~efl~~L~~~-gIpv~I~SaG~~~~Ie~vL~~ 215 (381)
+.+.+.+.|+.|.+. |+.++|+||--...++..+..
T Consensus 515 ~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~ 551 (726)
T PRK14501 515 PDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGD 551 (726)
T ss_pred CCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCC
Confidence 456888889999984 999999999887777776643
No 295
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=22.17 E-value=3.5e+02 Score=28.53 Aligned_cols=151 Identities=14% Similarity=0.056 Sum_probs=72.3
Q ss_pred chhhhhhhhccC------CC-CCCC-ccccCccccccccchhhhhhhccCCCceEECC-hhHHHHHHHHHHhcCCCceEE
Q 016842 17 HLANAISQQLHH------FL-PSKY-CCTSSPRVWNRCCSAQNKMENQDLSKFTIKGD-PQSLQNKISQIRMAGPSKLQV 87 (381)
Q Consensus 17 ~~~~~~~~~~~~------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~d-~~~~~~kl~~~~~~g~~klqV 87 (381)
.|+.-+-+|-|+ |. |.++ +..+.+++-.. ...|++.. ...|.+-| |+.+.+||.++..++..
T Consensus 163 ELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLd----g~KMSKS~-~n~I~L~Ds~~~I~kKI~~A~TDs~~---- 233 (431)
T PRK12284 163 EMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLD----GRKMSKSY-DNTIPLFAPREELKKAIFSIVTDSRA---- 233 (431)
T ss_pred HHHHHHHHHHhhhcCCcccCCCccccccccccccCCC----CccccCCC-CCEeeecCCHHHHHHHHhcCCCCCCC----
Confidence 455555555543 22 3333 33344555442 25788665 35666665 78999999988765332
Q ss_pred EEeCCccccccccCCCc-cccHHHHHhccC-hhHHHHHHHHHHhhCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHh
Q 016842 88 IADFDGTLTRYFINGSR-GQSSHGLLQQGN-PEYDAKRQALYEYYHPLEFSPTVPLEEK----TKLMEEWWGKTHGLLIE 161 (381)
Q Consensus 88 i~DFDgTIT~~~~~g~~-~dts~~il~~~~-~e~~~~~~~L~~~Y~piE~d~~is~eEk----~~~M~Ew~~~~~~Ll~~ 161 (381)
+ . ..|.+ ....+.+..-+. ++ ...++.+.|.. + +...+. ...+.+...-..+-..+
T Consensus 234 ------~-~---~~~~pe~snLl~i~~~~~~~~---~~eel~~~~~~----g-~~~g~~K~~Lae~i~~~L~PiRer~~~ 295 (431)
T PRK12284 234 ------P-G---EPKDTEGSALFQLYQAFATPE---ETAAFRQALAD----G-IGWGDAKQRLFERIDRELAPMRERYEA 295 (431)
T ss_pred ------C-C---CCCCCCcchHHHHHHHhCCcc---hHHHHHHHHhc----C-CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0 01111 123344544443 22 22334444421 1 221111 12222333322222222
Q ss_pred CCCCHHHHHHHHHccCCcccccHHHHHHHHHHC
Q 016842 162 GGLTYDAIKKSVSNALIAFRDGVVKLFEFLEER 194 (381)
Q Consensus 162 ~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~ 194 (381)
.--.+..+.+++++..-.-|.=+.+.++..++.
T Consensus 296 l~~d~~~l~~iL~~Ga~kAr~~A~~tl~~vr~~ 328 (431)
T PRK12284 296 LIARPADIEDILLAGAAKARRIATPFLAELREA 328 (431)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223456677777666566666777777777654
No 296
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=22.13 E-value=2.8e+02 Score=28.18 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=59.5
Q ss_pred ECChhHHHHHHHHHHhcCCCceEEEEeCCcccccccc------CC-C---ccccHHHHHhccC--hhHHHHHHHHHHhhC
Q 016842 64 KGDPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFI------NG-S---RGQSSHGLLQQGN--PEYDAKRQALYEYYH 131 (381)
Q Consensus 64 i~d~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~------~g-~---~~dts~~il~~~~--~e~~~~~~~L~~~Y~ 131 (381)
+-||..++..=.+|..+ .|-+-.++.+.. || - -+.+|...+.+.. +-....+.++-..|.
T Consensus 77 ~~d~~~Fr~LH~am~dA--------l~p~a~~~dYY~~~~~~dDGGYL~~LV~tCq~~l~~lP~y~~V~~~l~~la~lY~ 148 (330)
T PF10776_consen 77 SLDPKDFRQLHQAMLDA--------LDPGAPLSDYYRYRPEQDDGGYLRALVRTCQQVLAQLPSYELVRPYLLELARLYS 148 (330)
T ss_pred CCChHHHHHHHHHHHHH--------cCCCCCcchHHHcCCccccChHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 46899888887888765 233333444321 11 0 1255666666543 334445566666676
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 016842 132 PLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKK 171 (381)
Q Consensus 132 piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~glt~~~i~e 171 (381)
..-+-.++..+++.+.|.+||.+-..-.- +++.-++..
T Consensus 149 dLQv~KH~~~~~Re~~L~~W~~~~~~~~p--~l~W~EfaA 186 (330)
T PF10776_consen 149 DLQVYKHLDPEEREPRLKSWFERHRDKYP--ELEWWEFAA 186 (330)
T ss_pred HhhHhcCCChhhhHHHHHHHHHHhhhcCC--CccHHHHHH
Confidence 66677889999999999999987654321 344444443
No 297
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=21.84 E-value=2.2e+02 Score=25.96 Aligned_cols=55 Identities=18% Similarity=0.392 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHCCC--CEEEEecChHHHHHHHHHHhcCCCCCcceEEee-eeEEcCCCcEEecC
Q 016842 183 GVVKLFEFLEERDI--PVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSN-RMVFDKDGHLVSFK 243 (381)
Q Consensus 183 G~~efl~~L~~~gI--pv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN-~m~FdedG~l~gf~ 243 (381)
++...+..|++.|+ .++|...||+... .|+.. +|+.++++= +..|...|.-+||+
T Consensus 52 av~~a~~~L~~~Gf~PDvI~~H~GWGe~L--flkdv----~P~a~li~Y~E~~y~~~g~d~~FD 109 (171)
T PF12000_consen 52 AVARAARQLRAQGFVPDVIIAHPGWGETL--FLKDV----FPDAPLIGYFEFYYRASGADVGFD 109 (171)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCCcchhh--hHHHh----CCCCcEEEEEEEEecCCCCcCCCC
Confidence 34456777888998 8999999999644 34433 576676554 45667777777886
No 298
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=21.83 E-value=8.4e+02 Score=24.68 Aligned_cols=134 Identities=13% Similarity=0.135 Sum_probs=78.0
Q ss_pred cchhhhhhhccCCCceEEC-----ChhHHHHHHHHHHhcCCCceEEEEeCCccccccccCCCccccHHHHHhccC-----
Q 016842 47 CSAQNKMENQDLSKFTIKG-----DPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN----- 116 (381)
Q Consensus 47 ~~~~~~~~~~~~~~~v~i~-----d~~~~~~kl~~~~~~g~~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~----- 116 (381)
+-.+..|.+.+ ..+.+. -|..+++.|+.|++.|.=..+| |+ | ....|.+++.++
T Consensus 44 ~~I~~~m~~~~--~tvfl~~tg~~vssGlR~iia~LIr~~~idvvV--------TT----g--g~l~hDi~~~lg~~~~~ 107 (318)
T COG1899 44 VEILREMLESR--VTVFLGLTGNLVSSGLREIIADLIRNGLIDVVV--------TT----G--GNLDHDIIKALGGPHYC 107 (318)
T ss_pred HHHHHHHHhhc--CEEEEeccccccchhHHHHHHHHHHcCCeEEEE--------ec----C--CchhHHHHHHcCCCeec
Confidence 33555565443 333332 2667899999999988755544 33 1 235677887765
Q ss_pred hhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHccCCcccccHHHHHHHHHHC
Q 016842 117 PEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGG--LTYDAIKKSVSNALIAFRDGVVKLFEFLEER 194 (381)
Q Consensus 117 ~e~~~~~~~L~~~Y~piE~d~~is~eEk~~~M~Ew~~~~~~Ll~~~g--lt~~~i~e~v~~~~i~LrpG~~efl~~L~~~ 194 (381)
.++...=.+|.++..---. ...-..|.+...++|+....+-+-+.+ ++..++..-+. -.+.+-=..++.+..++
T Consensus 108 G~~~~dD~~Lr~~gi~RIg-nv~vp~e~y~~~E~~i~~i~~~l~~~~~~~s~~efi~elG---k~l~~~e~SiL~~A~~~ 183 (318)
T COG1899 108 GSFEVDDVELREEGINRIG-NVFVPNEEYEVFEEFIREILEKLLGIKKEWSTREFIYELG---KRLNDDESSILYTAAKN 183 (318)
T ss_pred cCcCCCHHHHHHhcccccc-ceecChHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHH---hhhCcccchHHHHHHHc
Confidence 2222222344544322111 223344555788889888887776655 67555554443 13332334689999999
Q ss_pred CCCEEE
Q 016842 195 DIPVLI 200 (381)
Q Consensus 195 gIpv~I 200 (381)
|||++.
T Consensus 184 ~VPIf~ 189 (318)
T COG1899 184 GVPIFC 189 (318)
T ss_pred CCCEEc
Confidence 999864
No 299
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=21.81 E-value=83 Score=29.88 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=25.9
Q ss_pred CcccccHHHHHHHHHHCCCCEEEEecChH
Q 016842 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (381)
Q Consensus 178 i~LrpG~~efl~~L~~~gIpv~I~SaG~~ 206 (381)
.-+++.+.++++++++.|+++.|-|+|..
T Consensus 83 Pll~~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 83 PALQKPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred hhhhHhHHHHHHHHHHCCCCEEEECCCCC
Confidence 44568999999999999999999999975
No 300
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=21.71 E-value=2.3e+02 Score=22.75 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCCCCEEEEecChHHHHHHHHHHh
Q 016842 184 VVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (381)
Q Consensus 184 ~~efl~~L~~~gIpv~I~SaG~~~~Ie~vL~~~ 216 (381)
+.++.+.++++|+.++.+|.....-++.+++..
T Consensus 48 l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 80 (124)
T PF00578_consen 48 LNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY 80 (124)
T ss_dssp HHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH
T ss_pred HHHHhhhhccceEEeeecccccccchhhhhhhh
Confidence 445677778889999999988888888888876
No 301
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=21.66 E-value=1.8e+02 Score=29.70 Aligned_cols=126 Identities=20% Similarity=0.278 Sum_probs=64.0
Q ss_pred hhhhhccCCCceEECChhHHHHHH-HHHHhcCCCceEEEEeCCccccccccCCCccccHHHHHhccChhHHHHHHHHHHh
Q 016842 51 NKMENQDLSKFTIKGDPQSLQNKI-SQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEY 129 (381)
Q Consensus 51 ~~~~~~~~~~~v~i~d~~~~~~kl-~~~~~~g~~klqVi~DFDgTIT~~~~~g~~~dts~~il~~~~~e~~~~~~~L~~~ 129 (381)
..|++.+..=-|+|+ ...|-.-. .-+...|..|+.| .|||.-=... .| --|-+.+...+..-..-+++.+.+
T Consensus 67 e~m~kl~~syVVVVG-~GgVGSwv~nmL~RSG~qKi~i-VDfdqVSlsS-LN----rHs~Atl~DVG~PK~~clkkh~sk 139 (430)
T KOG2018|consen 67 EGMEKLTNSYVVVVG-AGGVGSWVANMLLRSGVQKIRI-VDFDQVSLSS-LN----RHSCATLADVGTPKVMCLKKHFSK 139 (430)
T ss_pred hHHHHhcCcEEEEEe-cCchhHHHHHHHHHhcCceEEE-echhhccHhh-hh----hhhhhhHhhcCCchHHHHHHHHHh
Confidence 346655544444444 44444443 4567789999876 6999743221 11 112233444331223445566666
Q ss_pred hCC-CCCCCCCCHHHHHHHHHHHHHH--HHHHHHhCCCCHHHHHHHHHccCCcccccHHHHHHHHHHCCCCEEEE
Q 016842 130 YHP-LEFSPTVPLEEKTKLMEEWWGK--THGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIF 201 (381)
Q Consensus 130 Y~p-iE~d~~is~eEk~~~M~Ew~~~--~~~Ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIpv~I~ 201 (381)
.-| .|+++ + .+.|++ .++|+... ++-+.+.+.+ + +-=.++|++|..+|++++=.
T Consensus 140 iaPw~eIda------r----~~l~~~~s~edll~gn---PdFvvDciDN--i---dtKVdLL~y~~~~~l~Viss 196 (430)
T KOG2018|consen 140 IAPWCEIDA------R----NMLWTSSSEEDLLSGN---PDFVVDCIDN--I---DTKVDLLEYCYNHGLKVISS 196 (430)
T ss_pred hCccceecH------H----HhhcCCCchhhhhcCC---CCeEeEhhhh--h---hhhhHHHHHHHHcCCceEec
Confidence 655 44332 1 234543 34444322 3333333321 1 22346999999999998643
No 302
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.55 E-value=81 Score=22.37 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=20.9
Q ss_pred HHHHHHHHHccCCcccccHHHHHHHHHHCCCC
Q 016842 166 YDAIKKSVSNALIAFRDGVVKLFEFLEERDIP 197 (381)
Q Consensus 166 ~~~i~e~v~~~~i~LrpG~~efl~~L~~~gIp 197 (381)
++-++.+.+ .+|+|.+.+.+.|.+.|+|
T Consensus 18 ESLLdrItR----klr~gwKRl~~iLnQpGvP 45 (45)
T PF02061_consen 18 ESLLDRITR----KLRDGWKRLWDILNQPGVP 45 (45)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHcCCCCC
Confidence 344444444 6899999999999998876
No 303
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=21.40 E-value=43 Score=31.84 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=20.1
Q ss_pred CCceEEEEcCCC-CCcccccCCCccce
Q 016842 282 NRTNVLLLGDHI-GDLGMSDGLKYETR 307 (381)
Q Consensus 282 ~r~nVI~IGDg~-~Dl~ma~gl~~d~v 307 (381)
+..++++|||+. +|+.+|..+....+
T Consensus 194 ~~~~~~~VGD~~~~Di~~a~~~G~~~v 220 (249)
T TIGR01457 194 EREETLMVGDNYLTDIRAGIDAGIDTL 220 (249)
T ss_pred CcccEEEECCCchhhHHHHHHcCCcEE
Confidence 356899999997 89999985544444
No 304
>PLN02645 phosphoglycolate phosphatase
Probab=20.96 E-value=38 Score=33.39 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=19.8
Q ss_pred CCceEEEEcCCC-CCcccccCCCccce
Q 016842 282 NRTNVLLLGDHI-GDLGMSDGLKYETR 307 (381)
Q Consensus 282 ~r~nVI~IGDg~-~Dl~ma~gl~~d~v 307 (381)
...+++||||+. +|+.++.....+.+
T Consensus 246 ~~~~~~~VGD~~~~Di~~A~~aG~~~i 272 (311)
T PLN02645 246 EKSQICMVGDRLDTDILFGQNGGCKTL 272 (311)
T ss_pred CcccEEEEcCCcHHHHHHHHHcCCCEE
Confidence 356899999997 99999984444444
No 305
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=20.81 E-value=34 Score=32.97 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=19.2
Q ss_pred CceEEEEcCCC-CCcccccCCCccce
Q 016842 283 RTNVLLLGDHI-GDLGMSDGLKYETR 307 (381)
Q Consensus 283 r~nVI~IGDg~-~Dl~ma~gl~~d~v 307 (381)
..++++|||+. +|+.+|.....+.+
T Consensus 219 ~~~~lmIGD~~~tDI~~A~~aGi~si 244 (279)
T TIGR01452 219 PARTLMVGDRLETDILFGHRCGMTTV 244 (279)
T ss_pred hhhEEEECCChHHHHHHHHHcCCcEE
Confidence 56899999995 99999874444444
No 306
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=20.47 E-value=2.2e+02 Score=20.07 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHc
Q 016842 150 EWWGKTHGLLIEGGLTYDAIKKSVSN 175 (381)
Q Consensus 150 Ew~~~~~~Ll~~~glt~~~i~e~v~~ 175 (381)
+|+..+...|...|+++.++..++++
T Consensus 1 d~~~d~~~AL~~LGy~~~e~~~av~~ 26 (47)
T PF07499_consen 1 DALEDALEALISLGYSKAEAQKAVSK 26 (47)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 47788888899999999999998874
No 307
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=20.08 E-value=1.9e+02 Score=29.17 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=26.9
Q ss_pred cCCcccccHHHHHHHHHHCCCCEEEEecCh
Q 016842 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGL 205 (381)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gIpv~I~SaG~ 205 (381)
...-++|.+.+++++++++|+.+.|.|.|.
T Consensus 71 GEPll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 71 GEPLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred CccCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 456778999999999999999999999996
Done!