Query 016843
Match_columns 381
No_of_seqs 151 out of 1220
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3so4_A Methionine-adenosyltran 100.0 3E-186 1E-190 1370.3 30.2 372 2-378 21-404 (415)
2 3iml_A S-adenosylmethionine sy 100.0 3E-184 1E-188 1352.4 30.7 367 2-376 7-385 (399)
3 3s82_A S-adenosylmethionine sy 100.0 5E-184 2E-188 1355.3 25.2 367 3-376 9-402 (407)
4 2p02_A S-adenosylmethionine sy 100.0 8E-183 3E-187 1343.3 29.0 367 3-376 18-396 (396)
5 1p7l_A S-adenosylmethionine sy 100.0 4E-182 1E-186 1333.7 27.9 362 3-376 2-375 (383)
6 4hpv_A S-adenosylmethionine sy 98.3 2.8E-06 9.4E-11 85.5 10.7 274 12-313 29-355 (407)
7 1mp9_A Tata-binding protein; t 63.0 28 0.00095 31.7 8.4 80 186-298 13-96 (198)
8 1ais_A TBP, protein (tata-bind 54.2 26 0.00088 31.5 6.5 105 185-322 8-121 (182)
9 2z8u_A Tata-box-binding protei 51.3 23 0.0008 31.9 5.8 80 186-298 13-96 (188)
10 2gjh_A Designed protein; oblig 45.1 19 0.00063 26.9 3.3 38 64-101 18-55 (62)
11 1ytb_A Protein (tata binding p 34.0 97 0.0033 27.7 6.9 81 185-298 4-88 (180)
12 1qys_A TOP7; alpha-beta, novel 30.7 20 0.00069 29.1 1.7 38 64-101 62-99 (106)
13 3kxy_T EXSE; type-three secret 30.6 31 0.0011 26.0 2.6 21 269-293 17-37 (66)
14 1x4q_A U4/U6 small nuclear rib 28.7 52 0.0018 26.5 3.8 57 268-341 3-59 (92)
15 2w42_A PIWI, putative uncharac 27.4 42 0.0014 33.5 3.7 25 136-160 385-409 (427)
16 1rm1_A Tata-box binding protei 20.7 1.5E+02 0.0053 27.7 5.9 104 186-322 65-176 (240)
No 1
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=100.00 E-value=3.2e-186 Score=1370.30 Aligned_cols=372 Identities=61% Similarity=1.003 Sum_probs=354.5
Q ss_pred CccceecccCCCCCChhhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 016843 2 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 81 (381)
Q Consensus 2 ~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (381)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++
T Consensus 21 ~~~lFTSESVseGHPDKicDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IGY~~~ 100 (415)
T 3so4_A 21 SRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGYDDT 100 (415)
T ss_dssp -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred cceeEeeccccCCCChHHHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 016843 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 161 (381)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~ 161 (381)
++|||++||+|+++|++|||||+|||+.+ +..+++||||||||||||||||||||||||+|||+|++||+++||+|++
T Consensus 101 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~--~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk~g~l 178 (415)
T 3so4_A 101 NKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGIL 178 (415)
T ss_dssp GGTEETTTCEEEEEEEEECCC-------------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccCccCCceEEEEecccCChhhhhccccc--cchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999953 2345799999999999999999999999999999999999999999999
Q ss_pred CcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEc
Q 016843 162 SWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 241 (381)
Q Consensus 162 ~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviG 241 (381)
||||||+||||||+|++++|.++|+||+||||||||++++++++|+++|+|+||+|++|++|++++|+||||||||||||
T Consensus 179 ~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQH~~~v~~~~l~~~i~e~VI~~vip~~~ld~~t~~~INPtGrFViG 258 (415)
T 3so4_A 179 PWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIG 258 (415)
T ss_dssp TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTHHHHSCTTTCCSSCEEEESTTCCCCSC
T ss_pred CeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCeEEEECCCCCeEEC
Confidence 99999999999999987667889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCceEEEecCCCccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHH--
Q 016843 242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF-- 319 (381)
Q Consensus 242 GP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~-- 319 (381)
||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 259 GP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~PvSi~V~ 338 (415)
T 3so4_A 259 GPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLSINVN 338 (415)
T ss_dssp TTTTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSEEEEE
T ss_pred CCcccccccCceEEEEccCCcccCCCccccCCCccccccchhHHHHHHHHHHHHcCCcCeEEEEEEEeeccccceEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----------HHHHHHHHhcCCCchhhhhhcccCCCccchhhccccccCCCCCCCCCCccccccCCcCC
Q 016843 320 ----------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 378 (381)
Q Consensus 320 ----------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~d~~~~~~ 378 (381)
+|.++|+++|||||++||++|+|++| ||++||+||||||++++||||++|+|.+++
T Consensus 339 TfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~l~~~~ 404 (415)
T 3so4_A 339 TYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRP---IFQKTAVGGHFGRNDPDFKWEFPKELEIPA 404 (415)
T ss_dssp ECSCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CCTGGGSSCSSSCCCTTCTTSSCCCCCCCG
T ss_pred eCCCCcCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcccccCCCCCCCCCCcCCcccCCCH
Confidence 79999999999999999999999999 999999999999998899999999999865
No 2
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=100.00 E-value=3.4e-184 Score=1352.42 Aligned_cols=367 Identities=55% Similarity=0.884 Sum_probs=339.4
Q ss_pred CccceecccCCCCCChhhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 016843 2 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 81 (381)
Q Consensus 2 ~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (381)
.+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++
T Consensus 7 ~~~lFTSESVseGHPDKicDqISDaILDa~L~~Dp~arVAcEt~~~tg~V~v~GEItt~a~vd~~~ivR~~i~~IGY~~~ 86 (399)
T 3iml_A 7 NDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNT 86 (399)
T ss_dssp CEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCC--
T ss_pred cCceEeccccCCCCCcHHHHHHhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 016843 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 161 (381)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~ 161 (381)
++|||++||+|+++|++|||||+|||+.+. +..+++||||||||||||||||||||||||+|||+|++||+++||+|++
T Consensus 87 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~-~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~rl~~~Rk~g~l 165 (399)
T 3iml_A 87 DYGIDYRGCAVLVAYDKQSPDIAQGVDRAH-DNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRL 165 (399)
T ss_dssp -------CCEEEEEEEEECC-------------CTTCCBSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ccCccCCceEEEEecccCChhHhhhhcccc-cchhhcCcCcceeEEEEecCCccccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999521 1235799999999999999999999999999999999999999999999
Q ss_pred CcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEc
Q 016843 162 SWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 241 (381)
Q Consensus 162 ~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviG 241 (381)
||||||+||||||+|++ | +|+||+||||||||++++++++||++|+|+||+|++|++|++++|+||||||||||||
T Consensus 166 ~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~v~~~~l~~~i~e~vi~~vip~~~l~~~t~~~INPtGrFViG 241 (399)
T 3iml_A 166 PWLRPDAKSQVTVRYVD--G--KPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIG 241 (399)
T ss_dssp TTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTCCCCSC
T ss_pred CeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCeEeC
Confidence 99999999999999974 5 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCceEEEecCCCccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHH--
Q 016843 242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF-- 319 (381)
Q Consensus 242 GP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~-- 319 (381)
||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 242 GP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~P~Si~V~ 321 (399)
T 3iml_A 242 GPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVN 321 (399)
T ss_dssp GGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCSSCSEEEEE
T ss_pred CCcccccccccceeeecCCcccCCCCccccCCCccccchHHHHHHHHHHHHHHhhcccceeEEEEEEecCcccceEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----------HHHHHHHHhcCCCchhhhhhcccCCCccchhhccccccCCCCCCCCCCccccccCCc
Q 016843 320 ----------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 376 (381)
Q Consensus 320 ----------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~d~~~~ 376 (381)
+|.++|+++|||||++||++|+|++| ||++||+||||||++++||||++|+++.
T Consensus 322 tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~v~~ 385 (399)
T 3iml_A 322 TFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRP---IYEKTAAYGHFGREEPEFSWEAADKALA 385 (399)
T ss_dssp CTTCCSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSS---CCGGGGSSCSSSCCCTTCGGGCCTTHHH
T ss_pred eCCCcccCHHHHHHHHHHHcCCCHHHHHHHcCCCCC---chhhhcCcCCCCCCCCCCCccCccHHHH
Confidence 79999999999999999999999999 9999999999999988999999998754
No 3
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=100.00 E-value=5.1e-184 Score=1355.28 Aligned_cols=367 Identities=55% Similarity=0.876 Sum_probs=342.3
Q ss_pred ccceecccCCCCCChhhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeee---eeccHHHHHHHHHHhhCCC
Q 016843 3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK---AKVDYEKIVRDTCRSIGFV 79 (381)
Q Consensus 3 ~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~---a~vd~~~ivR~~i~~IGY~ 79 (381)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+ ++||+++|||++|++|||+
T Consensus 9 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~vttg~V~v~GEItt~~~~a~vd~~~ivR~~i~~IGY~ 88 (407)
T 3s82_A 9 GRLFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGYD 88 (407)
T ss_dssp CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCHHHHHTHHHHHHHHHHHHTCE
T ss_pred ceEEeeccccCCCCcHHHhhhhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEeeCCcccccCHHHHHHHHHHhcCCC
Confidence 5899999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCCCCCCceEEEEeeccCChhhhccccCCCC-------CCCCCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHH
Q 016843 80 SDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFT-------KRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARL 152 (381)
Q Consensus 80 ~~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~-------~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l 152 (381)
++++|||++||+|+++|++|||||+|||+...+ +..+++||||||||||||||||||||||||+|||+|++||
T Consensus 89 ~~~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~e~r~~~~~~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~rl 168 (407)
T 3s82_A 89 SSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRRL 168 (407)
T ss_dssp EGGGTEETTTSEEEEEEEEECC--------------------------CCCEEEEEEEETTSTTSSCHHHHHHHHHHHHH
T ss_pred CcccCcCCCceEEEEecccCChHHHhhhcchhhcccccccchhhhcCCccceeEEEEecCCCcccCchHHHHHHHHHHHH
Confidence 999999999999999999999999999996421 1125799999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHH-HHHHHHHhhcccccCC----CCCCCC
Q 016843 153 TEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVIPE----KYLDEK 227 (381)
Q Consensus 153 ~~~Rk~~~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~-l~~~i~e~Vi~~v~~~----~~~~~~ 227 (381)
+++||+|++||||||+||||||+|++ | +|+||+||||||||++++++++ |+++|+|+||+|++|. +|++++
T Consensus 169 a~~Rk~g~l~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~v~~~~~l~~~i~e~VI~~vip~~~~~~~~~~~ 244 (407)
T 3s82_A 169 TEVRKNGVLPYLRPDGKTQVTIEFED--D--VPVRLDTVVISTQHAADIDLENTLTPDIREKVLNTVLNDLAHDTLDTSS 244 (407)
T ss_dssp HHHHHTSSSTTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTCCTTTTHHHHHHHHTHHHHHHHHCCSSCBCTT
T ss_pred HHHHHcCCCCeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCcccccccCCcC
Confidence 99999999999999999999999973 6 9999999999999999999999 9999999999999998 889999
Q ss_pred cEEEECCCCCeEEcCCCCCcccCCceEEEecCCCccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEE
Q 016843 228 TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVS 307 (381)
Q Consensus 228 t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqls 307 (381)
|+||||||||||||||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||
T Consensus 245 t~~~INPtGrFViGGP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQls 324 (407)
T 3s82_A 245 TRLLVNPTGKFVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEVQVA 324 (407)
T ss_dssp CEEEESTTCCCCSCTTTTSEEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEE
T ss_pred eEEEECCCCCeEECCCcccccccCceEEEecCCCcccCCCccccCCCccccchhHHHHHHHHHHHHHHcccccceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCcccHH------------HHHHHHHHhcCCCchhhhhhcccCCCccchhhccccccCCCCCCCCCCccccccCC
Q 016843 308 YAIGVPEPLSVF------------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 375 (381)
Q Consensus 308 YAIG~a~Pvsi~------------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~d~~~ 375 (381)
||||+++|+||+ +|.++|+++|||||++||++|+|+|| ||++||+||||||++++||||+||+++
T Consensus 325 YAIGva~PvSi~V~tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~dkv~ 401 (407)
T 3s82_A 325 YAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRP---IYAQTAAYGHFGRTDVELPWEQLNKVD 401 (407)
T ss_dssp ECTTCSSCSEEEEECTTCCSSCHHHHHHHHHHHSCCSHHHHHHHTTCSSS---CCGGGSSSCSSSCSSSCCGGGCCTTHH
T ss_pred EecccccceEEEEEeCCCCCCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcCcCCCCCCCCCCCccCCcHHH
Confidence 999999999998 79999999999999999999999999 999999999999998899999999975
Q ss_pred c
Q 016843 376 W 376 (381)
Q Consensus 376 ~ 376 (381)
.
T Consensus 402 ~ 402 (407)
T 3s82_A 402 D 402 (407)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=100.00 E-value=7.7e-183 Score=1343.33 Aligned_cols=367 Identities=68% Similarity=1.104 Sum_probs=356.0
Q ss_pred ccceecccCCCCCChhhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCC
Q 016843 3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDD 82 (381)
Q Consensus 3 ~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 82 (381)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||++|||++|++|||++++
T Consensus 18 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 97 (396)
T 2p02_A 18 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSS 97 (396)
T ss_dssp EEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGG
T ss_pred ceEEeeccccCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcccccCCHHHHHHHHHHHhCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 016843 83 VGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 162 (381)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~ 162 (381)
+|||++||+|+++|++|||||+|||+.. +..+++||||||||||||||||||||||||+|||+|++||+++||+|++|
T Consensus 98 ~gfd~~tc~Vl~~i~~QSpDIaqGV~~~--~~~~e~GAGDQGiMFGYAt~ET~elMPlpi~lAh~L~~rla~~Rk~g~l~ 175 (396)
T 2p02_A 98 KGFDYKTCNVLVALEQQSPDIAQGVHLD--RNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLP 175 (396)
T ss_dssp GTEETTTSEEEEEEECCCHHHHHHHTTT--CCGGGCCBSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHTTSST
T ss_pred cCCCCCceEEEEecccCChhhhhccccc--ccccccCCCCcceEEEEeCCCCcccCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999953 11136999999999999999999999999999999999999999999999
Q ss_pred cccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 016843 163 WLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242 (381)
Q Consensus 163 ~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (381)
||||||||||||+|++++|.|+|+||+||||||||++++++++||++|+|+||+|++|++|++++|+|||||||||||||
T Consensus 176 ~lrPD~KtQVTveY~~~~~~~~P~rv~tvviS~QH~~~v~~~~lr~~i~e~vi~~v~p~~~ld~~t~~~INPtGrFviGG 255 (396)
T 2p02_A 176 WLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGG 255 (396)
T ss_dssp TEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSSCCHHHHHHHHHHTTHHHHSCGGGCCTTCEEEESTTSCCCSCG
T ss_pred ccCCCcceEEEEEEEcCCCCcCceEEeEEEEeecCCCCCCHHHHHHHHHHHHHHHhcChhhcCCCeEEEECCCCCcccCC
Confidence 99999999999999854466789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHH---
Q 016843 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF--- 319 (381)
Q Consensus 243 P~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~--- 319 (381)
|+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 256 P~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~Vdt 335 (396)
T 2p02_A 256 PQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFH 335 (396)
T ss_dssp GGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEEEEC
T ss_pred CcccccccCceEEEEcCCCccCCCCcccCCCCccccchhhHHHHHHHHHHHHhhccCCeeEEEEEeecCcccccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------HHHHHHHHhcCCCchhhhhhcccCCCccchhhccccccCCCCCCCCCCccccccCCc
Q 016843 320 ---------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 376 (381)
Q Consensus 320 ---------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~d~~~~ 376 (381)
+|.++|+++|||||++||++|+|+|| ||++||+||||||+ +||||++|+++.
T Consensus 336 fGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGr~--~fpWE~~d~~~~ 396 (396)
T 2p02_A 336 YGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP---IYQRTAAYGHFGRD--SFPWEVPKKLKY 396 (396)
T ss_dssp TTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CGGGGSSSCSSSST--TCGGGSCCCCCC
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHhcCCCCC---cchhhccccCcCCC--CCCcccccccCC
Confidence 89999999999999999999999999 99999999999997 699999999863
No 5
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=100.00 E-value=4.3e-182 Score=1333.69 Aligned_cols=362 Identities=57% Similarity=0.921 Sum_probs=353.2
Q ss_pred ccceecccCCCCCChhhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCC
Q 016843 3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDD 82 (381)
Q Consensus 3 ~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 82 (381)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||++++
T Consensus 2 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 81 (383)
T 1p7l_A 2 KHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSD 81 (383)
T ss_dssp CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGG
T ss_pred CceeeccccCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCcEEEEEEEeccccCCHHHHHHHHHHHhCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 016843 83 VGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 162 (381)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~ 162 (381)
+|||++||+|+++|++|||||+|||+... .+++||||||||||||||||||||||||+|||+|++||+++||+|++|
T Consensus 82 ~gfd~~tc~v~~~i~~QSpdIa~GV~~~~---~~e~GAGDQGiMFGYA~~ET~e~MPlpi~lAh~L~~rl~~~Rk~g~~~ 158 (383)
T 1p7l_A 82 MGFDANSCAVLSAIGKQSPDINQGVDRAD---PLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLP 158 (383)
T ss_dssp GTEETTTSEEEEEEECCCHHHHHHHSCSS---TTTCCCSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSST
T ss_pred cCcCCCceEEEEecccCChHHhhhcCccc---ccccccCCCceeeEEecCCCcccCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999531 236999999999999999999999999999999999999999999999
Q ss_pred cccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 016843 163 WLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242 (381)
Q Consensus 163 ~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (381)
||||||||||||+|++ | +|+||+||||||||++++++++||++|+|+||+|++|++|++++|+|||||||||||||
T Consensus 159 ~lrPD~KtQVtveY~~--~--~P~rv~tvviS~QH~~~v~~~~l~~~i~e~vi~~v~p~~~ld~~t~~~iNPtGrFviGG 234 (383)
T 1p7l_A 159 WLRPDAKSQVTFQYDD--G--KIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGG 234 (383)
T ss_dssp TEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTSCCCSCH
T ss_pred ccCCCccceEEEEEeC--C--ceeEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCccccCCCeEEEECCCCCcccCC
Confidence 9999999999999984 6 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHH---
Q 016843 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF--- 319 (381)
Q Consensus 243 P~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~--- 319 (381)
|+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 235 P~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~Vdt 314 (383)
T 1p7l_A 235 PMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVET 314 (383)
T ss_dssp HHHSCEETTCCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEECTTCCSCSEEEEEC
T ss_pred ccccccccCceEEEEccCCccCCCCcccCCCCCcccchhhhHHHHHHHHHHhhhccccceeeeeeeecccccccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------HHHHHHHHhcCCCchhhhhhcccCCCccchhhccccccCCCCCCCCCCccccccCCc
Q 016843 320 ---------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 376 (381)
Q Consensus 320 ---------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~d~~~~ 376 (381)
+|.++|+++|||||++||++|+|+|| ||++||+||||||+ +||||++|+++.
T Consensus 315 fGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGr~--~fpWE~~d~~~~ 375 (383)
T 1p7l_A 315 FGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHP---IYKETAAYGHFGRE--HFPWEKTDKAQL 375 (383)
T ss_dssp TTCBSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSS---CCGGGGSSCSSSCT--TSTTTCCSHHHH
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHhcCCCCC---chhhhccccCcCCC--CCCccccchHHH
Confidence 89999999999999999999999999 99999999999997 699999998764
No 6
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=98.29 E-value=2.8e-06 Score=85.52 Aligned_cols=274 Identities=20% Similarity=0.256 Sum_probs=158.0
Q ss_pred CCCCChhhhhhhHHHHHHHH----hhc---------CCCCcEEEEEEee--------eCeEEEEEEeeeee---e----c
Q 016843 12 NEGHPDKLCDQISDAVLDAC----LEQ---------DPESKVACETCTK--------TNMVMVFGEITTKA---K----V 63 (381)
Q Consensus 12 ~~GHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v~--------~~~v~i~GEitt~a---~----v 63 (381)
+-||||-|||-||+++=-++ |++ |+---||-+..-+ .=.|+++|..|+.. . +
T Consensus 29 GiGHPDsIcDgiaE~vS~aLs~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAT~~~~g~~~~~~i 108 (407)
T 4hpv_A 29 GLGHPDYIADAVAEEASRKLSLYYLKKYGVILHHNLDKTLVVGGQATPRFKGGDIIQPIYIIVAGRATTEVKTESGIDQI 108 (407)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECCEEEEETTEEEEEECEEEEEEEEECCEEECSSCEEEC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEeeccCCCceeeeeEEEEEecceEEEECCccccccc
Confidence 67999999999999885543 222 5544455444332 22478899887653 2 7
Q ss_pred cHHHHHHH----HHHh-hCCCCCCCCCCCCc-eEEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecCC-CCC
Q 016843 64 DYEKIVRD----TCRS-IGFVSDDVGLDADH-CKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDE-TSE 136 (381)
Q Consensus 64 d~~~ivR~----~i~~-IGY~~~~~gfd~~~-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~E-T~~ 136 (381)
.+.+|+.+ .|++ +.+ +|.+. ..|...+.+-|+|+..-..+. ..-..|-|-....|||-=. ||+
T Consensus 109 Pv~~Ia~~AAk~~l~~~l~~------lD~e~~v~i~~~i~~GS~dL~~vf~r~----~~vp~ANDTS~gVGyAPlS~~E~ 178 (407)
T 4hpv_A 109 PVGTIIIESVKEWIRNNFRY------LDAERHVIVDYKIGKGSSDLVGIFEAS----KRVPLSNDTSFGVGFAPLTKLEK 178 (407)
T ss_dssp CHHHHHHHHHHHHHHHHCSS------CCTTTSEEEEEEEECCEEECC----------CCCCBCSSCCEEEEEESCCHHHH
T ss_pred CHHHHHHHHHHHHHHHhccc------CCCCCcEEEEeeeCCCChhHHHHhcCC----CCCccccccCceeccCCCCHHHH
Confidence 78877644 4444 222 45543 566778999999988765531 1134799999999999432 331
Q ss_pred CCCcHHHHHHHHHHHHH--HHHHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCC-hHHHHHHHHHh
Q 016843 137 FMPLSHVLATKLGARLT--EVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVT-NDEIAADLKEH 213 (381)
Q Consensus 137 ~MPl~i~lAh~L~~~l~--~~Rk~~~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~-~~~l~~~i~e~ 213 (381)
|.-.+-+.|. +++ ..+|+.+.|-|.-- ++ +. ..+. +.|..-.|+ .|-.+.+ .-+.++.+++.
T Consensus 179 -------~Vl~~E~~Lns~~~k--~~~P~~GeDIKVMG-~R--~g-~~i~-LTvA~a~v~-r~v~~~~~Y~~~K~~v~~~ 243 (407)
T 4hpv_A 179 -------LVYETERHLNSKQFK--AKLPEVGEDIKVMG-LR--RG-NEVD-LTIAMATIS-ELIEDVNHYINVKEQVRNQ 243 (407)
T ss_dssp -------HHHHHHHHHHSHHHH--HHCTTEEEEEEEEE-EE--ET-TEEE-EEEEEEEEG-GGCCSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHhcchhhh--hhCcccCCceEEEE-Ee--eC-CeEE-EEEEhhhhh-hhhCCHHHHHHHHHHHHHH
Confidence 1112222221 233 35899999999853 33 22 2111 222222222 3333222 12444445444
Q ss_pred hcccccCCCCCCC-CcEEEECCCCC-------eEEcCC---CCCcccCCceEEEecC-CCccccccccccCCCC-Ccccc
Q 016843 214 VIKPVIPEKYLDE-KTIFHLNPSGR-------FVIGGP---HGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDP-TKVDR 280 (381)
Q Consensus 214 Vi~~v~~~~~~~~-~t~~~INPtG~-------FviGGP---~~DtGLTGRKiiVDTY-Gg~~~HGGGAfSGKDp-tKVDR 280 (381)
|-+ .+. ++-+. +..++||..-. +++=|. +||.|.+||=.=|--- =++-|-+==|-+||.| +-|=.
T Consensus 244 v~~-~a~-~~~~~~~v~v~vNt~D~~~~g~~YLTvtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGK 321 (407)
T 4hpv_A 244 ILD-LAS-KIAPGYNVRVYVNTGDKIDKNILYLTVTGTSAEHGDDGMTGRGNRGVGLITPMRPMSLEATAGKNPVNHVGK 321 (407)
T ss_dssp HHH-HHH-HHCTTSEEEEEECTTCBGGGTBCCEESSSCGGGGTCCEETTSSCCTTSSBCTTSCCCCCCCTTSCTTTCHHH
T ss_pred HHH-HHH-hcCCCCceEEEEecCCCcCCCceEEEecccccccCCCcccccCcccccccCCCCCccccccCCCCCccchhH
Confidence 332 111 12222 56789997532 233333 6899999994322110 1223445568899998 45666
Q ss_pred hhhhHHHHHHHHHHHh--cccccceEEEEEeecCC
Q 016843 281 SGAYIVRQAAKSIVAN--GLARRCIVQVSYAIGVP 313 (381)
Q Consensus 281 SaAY~AR~iAKniVaa--GlA~~ceVqlsYAIG~a 313 (381)
-=..+|..||+.|++. | .++|.|.|---||.|
T Consensus 322 IYNvlA~~iA~~I~~~v~g-v~ev~V~llSqIG~P 355 (407)
T 4hpv_A 322 LYNVLANLIANKIAQEVKD-VKFSQVQVLGQIGRP 355 (407)
T ss_dssp HHHHHHHHHHHHHHHHCTT-EEEEEEEEECCTTSB
T ss_pred HHHHHHHHHHHHHHHhcCC-cceEEEEEecccCCC
Confidence 6688999999999984 5 578999988889865
No 7
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=63.05 E-value=28 Score=31.70 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=59.4
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 016843 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (381)
Q Consensus 186 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 261 (381)
++|.+||-|+.=.-.+++++|...+..---.|- +|. .+-++++..+|-.||++++=|
T Consensus 13 ~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TG------------------- 73 (198)
T 1mp9_A 13 VNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTG------------------- 73 (198)
T ss_dssp EEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEEC-------------------
T ss_pred eEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEec-------------------
Confidence 689999999999999999999877655433332 232 123567899999999999755
Q ss_pred ccccccccccCCCCCcccchhhhHHHHHHHHHHHhcc
Q 016843 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 298 (381)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 298 (381)
.|--..+..++|.+++.|-..|.
T Consensus 74 --------------akS~e~a~~a~~~i~~~L~~lG~ 96 (198)
T 1mp9_A 74 --------------AKSTDELIKAVKRIIKTLKKYGM 96 (198)
T ss_dssp --------------CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCC
Confidence 33334677778888888888887
No 8
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=54.20 E-value=26 Score=31.45 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=67.6
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCC
Q 016843 185 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYG 260 (381)
Q Consensus 185 p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 260 (381)
.++|++||-|+.=...+++++|...+..---.|- +|. .+-++++..+|-.||++++=|
T Consensus 8 ~~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TG------------------ 69 (182)
T 1ais_A 8 KLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTG------------------ 69 (182)
T ss_dssp EEEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEE------------------
T ss_pred ceEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEec------------------
Confidence 4689999999999999999999765544333332 232 123567889999999999755
Q ss_pred CccccccccccCCCCCcccchhhhHHHHHHHHHHHhcc--cccceEEEE---EeecCCCcccHHHHH
Q 016843 261 GWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL--ARRCIVQVS---YAIGVPEPLSVFEIL 322 (381)
Q Consensus 261 g~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl--A~~ceVqls---YAIG~a~Pvsi~~i~ 322 (381)
.|--..+.-++|.+++.+-..|+ ++.-.+++- -..-...|+.+..|.
T Consensus 70 ---------------akS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la 121 (182)
T 1ais_A 70 ---------------AKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVA 121 (182)
T ss_dssp ---------------ESSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHHHH
Confidence 23334667778888888888887 333333221 112234566555553
No 9
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=51.31 E-value=23 Score=31.94 Aligned_cols=80 Identities=19% Similarity=0.343 Sum_probs=57.2
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 016843 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (381)
Q Consensus 186 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 261 (381)
+.|.+||-|+.=...+++++|...+..---.|- +|. .+-++++..+|-.||++++=|
T Consensus 13 ~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TG------------------- 73 (188)
T 2z8u_A 13 IKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTG------------------- 73 (188)
T ss_dssp CEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEE-------------------
T ss_pred cEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEec-------------------
Confidence 689999999998899999999876654333332 232 223567899999999999654
Q ss_pred ccccccccccCCCCCcccchhhhHHHHHHHHHHHhcc
Q 016843 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 298 (381)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 298 (381)
.|--..+..++|.+|+.|-..|.
T Consensus 74 --------------AkS~e~a~~a~~~~~~~L~~lg~ 96 (188)
T 2z8u_A 74 --------------AKSKEEAEIAIKKIIKELKDAGI 96 (188)
T ss_dssp --------------ESSHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------CCCHHHHHHHHHHHHHHHHhcCC
Confidence 23334677788899998888886
No 10
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=45.07 E-value=19 Score=26.92 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCceEEEEeeccCCh
Q 016843 64 DYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSP 101 (381)
Q Consensus 64 d~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~i~~QS~ 101 (381)
.+..|.-++..+.||++-...+|.++.+|.-.+..-|-
T Consensus 18 kfaailikvfaelgyndinvtwdgdtvtvegqleggsl 55 (62)
T 2gjh_A 18 KFAAILIKVFAELGYNDINVTWDGDTVTVEGQLEGGSL 55 (62)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSSCEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHhCcccceeEEcCCEEEEEeEEcCCcc
Confidence 35567888999999999999999999998887776553
No 11
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=33.97 E-value=97 Score=27.69 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=56.9
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCC
Q 016843 185 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYG 260 (381)
Q Consensus 185 p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 260 (381)
..+|.+||-|+.=.-.++++++...+..---+|- +|. .+.++++..+|=.||+.|+=|
T Consensus 4 ~~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TG------------------ 65 (180)
T 1ytb_A 4 VPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTG------------------ 65 (180)
T ss_dssp CCEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEE------------------
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEe------------------
Confidence 3688999999998899999998865433333332 232 123577899999999999755
Q ss_pred CccccccccccCCCCCcccchhhhHHHHHHHHHHHhcc
Q 016843 261 GWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 298 (381)
Q Consensus 261 g~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 298 (381)
.|--..+.-+++.+++-|-..|+
T Consensus 66 ---------------aks~e~~~~a~~~i~~~L~~lg~ 88 (180)
T 1ytb_A 66 ---------------AKSEDDSKLASRKYARIIQKIGF 88 (180)
T ss_dssp ---------------ESSHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------cCCHHHHHHHHHHHHHHHHHcCC
Confidence 23334556667888888877786
No 12
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=30.74 E-value=20 Score=29.08 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCceEEEEeeccCCh
Q 016843 64 DYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSP 101 (381)
Q Consensus 64 d~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~i~~QS~ 101 (381)
.+..|.-++..+.||++-...||.++.+|.-.+..-|-
T Consensus 62 kfaailikvfaelgyndinvtfdgdtvtvegqleggsl 99 (106)
T 1qys_A 62 KFAAILIKVFAELGYNDINVTFDGDTVTVEGQLEGGSL 99 (106)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTEEEEEEEC-----
T ss_pred HHHHHHHHHHHHhCCcceeEEEcCCeEEEEeEEcCCcc
Confidence 45668889999999999999999999998887766554
No 13
>3kxy_T EXSE; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=30.58 E-value=31 Score=25.98 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=15.0
Q ss_pred cccCCCCCcccchhhhHHHHHHHHH
Q 016843 269 AFSGKDPTKVDRSGAYIVRQAAKSI 293 (381)
Q Consensus 269 AfSGKDptKVDRSaAY~AR~iAKni 293 (381)
|.-|.|-| |.|=+|||+|+|+
T Consensus 17 avrgedrs----svaglarwlarnv 37 (66)
T 3kxy_T 17 AVRGEDRS----SVAGLARWLARNV 37 (66)
T ss_dssp CCCCCCCS----CHHHHHHHHHHHT
T ss_pred HHhccchh----hHHHHHHHHHHhc
Confidence 34455444 4578999999998
No 14
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.69 E-value=52 Score=26.48 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=45.4
Q ss_pred ccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHHHHHHHHHHhcCCCchhhhhhcc
Q 016843 268 GAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFEILKIVKESFDFRPGMMTINLD 341 (381)
Q Consensus 268 GAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~~i~~~i~~~Fdl~p~~Ii~~L~ 341 (381)
.+-|+=|.|||+... +-.||+|.|..- .|..+++-|.-+...+++. .+|..++.+|.
T Consensus 3 ~~~~~~d~~kv~l~~--lkpWI~kkv~e~-------------LG~eD~~lVd~i~~~l~~~--~dpk~l~~~L~ 59 (92)
T 1x4q_A 3 SGSSGMALSKRELDE--LKPWIEKTVKRV-------------LGFSEPTVVTAALNCVGKG--MDKKKAADHLK 59 (92)
T ss_dssp CCSSCCCCCHHHHHH--HHHHHHHHHHHH-------------HSSCCHHHHHHHHHHHHTT--CCHHHHHHHHT
T ss_pred CCCCCccchHHhHHH--HHHHHHHHHHHH-------------cCCCcHHHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 346889999999875 599999999743 8999998888676777754 57889988886
No 15
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=27.40 E-value=42 Score=33.49 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=21.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCC
Q 016843 136 EFMPLSHVLATKLGARLTEVRKNST 160 (381)
Q Consensus 136 ~~MPl~i~lAh~L~~~l~~~Rk~~~ 160 (381)
.=+|.|+.+||+|+.++.++..-+.
T Consensus 385 v~vPap~~YAhklA~l~~~~~~~~~ 409 (427)
T 2w42_A 385 RNLPVTVNYPKLVAGIIANVNRYGG 409 (427)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcCcchHhHHHHHHHHhhhhhcCC
Confidence 4589999999999999999987444
No 16
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=20.74 E-value=1.5e+02 Score=27.68 Aligned_cols=104 Identities=15% Similarity=0.231 Sum_probs=66.6
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 016843 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (381)
Q Consensus 186 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 261 (381)
.+|.+||-|+.=.-.+++++|...+..---+|- +|. .+-++++..+|=.||++|+=|
T Consensus 65 ~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpgli~Rl~~Pk~t~lIF~SGKiV~TG------------------- 125 (240)
T 1rm1_A 65 PTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTG------------------- 125 (240)
T ss_dssp CEEEEEEEEEECCSCCCHHHHHHHBTTEEECTTTCSEEEEEEETTEEEEEEETTSEEEEEE-------------------
T ss_pred eEEEEEEEEEEcCCccCHHHHHhhCCCcEEcCcccceEEEEeCCCcEEEEEECCCeEEEEe-------------------
Confidence 578999999998899999999865433223332 222 112567889999999999755
Q ss_pred ccccccccccCCCCCcccchhhhHHHHHHHHHHHhcc-cccceEEEEEee---cCCCcccHHHHH
Q 016843 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL-ARRCIVQVSYAI---GVPEPLSVFEIL 322 (381)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl-A~~ceVqlsYAI---G~a~Pvsi~~i~ 322 (381)
.|--..+.-+++.+++-|-..|+ ++-.++++-=-. =.+.|+.+..|.
T Consensus 126 --------------aks~e~a~~A~~~i~~~L~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~la 176 (240)
T 1rm1_A 126 --------------AKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLA 176 (240)
T ss_dssp --------------ESSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHH
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCCCcccCcceEEEEEEEEeCCCccCHHHHH
Confidence 33334556667888888888886 444454441111 235566655553
Done!