Query 016844
Match_columns 381
No_of_seqs 115 out of 245
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:19:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 2.6E-96 6E-101 707.2 17.2 369 1-379 2-375 (408)
2 PF03547 Mem_trans: Membrane t 100.0 8.4E-47 1.8E-51 378.1 27.5 344 10-380 2-361 (385)
3 COG0679 Predicted permeases [G 100.0 1.9E-27 4.2E-32 233.0 20.7 279 7-380 2-280 (311)
4 TIGR00946 2a69 he Auxin Efflux 99.9 1.5E-24 3.2E-29 213.2 19.8 291 6-381 2-294 (321)
5 PRK09903 putative transporter 99.9 2.9E-22 6.3E-27 196.6 21.9 275 13-380 8-283 (314)
6 TIGR00841 bass bile acid trans 95.6 0.27 5.9E-06 47.8 13.3 135 10-163 137-275 (286)
7 TIGR00841 bass bile acid trans 93.9 0.073 1.6E-06 51.8 4.6 80 294-380 13-93 (286)
8 TIGR00832 acr3 arsenical-resis 85.2 1.7 3.6E-05 43.3 5.7 109 15-127 182-297 (328)
9 COG0385 Predicted Na+-dependen 84.3 4.2 9E-05 40.4 7.9 44 74-117 224-267 (319)
10 PF05684 DUF819: Protein of un 80.2 11 0.00023 38.4 9.3 86 16-104 27-116 (378)
11 COG0385 Predicted Na+-dependen 74.4 4.4 9.6E-05 40.2 4.5 80 292-378 41-121 (319)
12 PF13593 DUF4137: SBF-like CPA 69.3 12 0.00025 37.1 6.2 112 254-378 4-117 (313)
13 TIGR00832 acr3 arsenical-resis 69.0 16 0.00036 36.2 7.3 109 254-379 13-128 (328)
14 PF01758 SBF: Sodium Bile acid 66.5 4.6 0.0001 36.5 2.6 79 295-379 4-83 (187)
15 PF03806 ABG_transport: AbgT p 60.2 1.4E+02 0.0031 31.5 12.4 79 14-94 80-164 (502)
16 PF13593 DUF4137: SBF-like CPA 57.8 1.4E+02 0.0029 29.5 11.3 105 12-123 162-273 (313)
17 PRK11339 abgT putative aminobe 57.3 42 0.00091 35.5 7.9 80 13-94 89-174 (508)
18 PRK12460 2-keto-3-deoxyglucona 51.3 71 0.0015 31.7 8.0 103 13-124 165-268 (312)
19 TIGR00783 ccs citrate carrier 50.1 34 0.00073 34.4 5.6 84 17-103 207-296 (347)
20 PRK11677 hypothetical protein; 45.9 23 0.00049 30.8 3.2 25 73-100 3-27 (134)
21 TIGR00819 ydaH p-Aminobenzoyl- 45.7 2.6E+02 0.0057 29.7 11.6 106 11-129 84-196 (513)
22 PF03616 Glt_symporter: Sodium 44.1 3.6E+02 0.0077 27.3 13.1 108 55-172 72-187 (368)
23 PF05684 DUF819: Protein of un 44.0 1.2E+02 0.0027 30.7 8.7 103 14-127 240-343 (378)
24 TIGR00210 gltS sodium--glutama 43.4 64 0.0014 33.1 6.6 90 35-130 270-363 (398)
25 COG2323 Predicted membrane pro 43.1 74 0.0016 30.1 6.4 81 14-101 8-88 (224)
26 TIGR03802 Asp_Ala_antiprt aspa 39.5 38 0.00081 36.3 4.4 149 10-171 8-187 (562)
27 PRK03818 putative transporter; 38.8 88 0.0019 33.5 7.0 128 35-171 54-185 (552)
28 COG2978 AbgT Putative p-aminob 38.6 1.3E+02 0.0028 31.6 7.8 71 11-85 89-160 (516)
29 PF06295 DUF1043: Protein of u 37.4 33 0.00072 29.3 3.0 22 79-100 2-23 (128)
30 PRK04972 putative transporter; 36.7 77 0.0017 34.0 6.2 88 11-102 11-119 (558)
31 PF03390 2HCT: 2-hydroxycarbox 36.5 5E+02 0.011 26.9 12.1 111 12-127 51-178 (414)
32 COG3763 Uncharacterized protei 36.3 57 0.0012 25.1 3.7 25 71-95 2-26 (71)
33 PF06305 DUF1049: Protein of u 35.9 54 0.0012 24.2 3.6 26 73-98 18-43 (68)
34 KOG2262 Sexual differentiation 34.9 8.6 0.00019 41.6 -1.3 95 66-170 438-534 (761)
35 PRK05326 potassium/proton anti 34.8 1.7E+02 0.0036 31.2 8.4 97 22-124 252-350 (562)
36 PF03812 KdgT: 2-keto-3-deoxyg 32.0 1.7E+02 0.0036 29.1 7.1 108 11-126 168-276 (314)
37 COG0475 KefB Kef-type K+ trans 29.2 1.7E+02 0.0037 29.8 7.1 78 22-102 251-329 (397)
38 PF03601 Cons_hypoth698: Conse 29.0 51 0.0011 32.5 3.1 85 17-105 29-116 (305)
39 COG3180 AbrB Putative ammonia 28.5 92 0.002 31.5 4.8 48 54-101 65-116 (352)
40 PRK01844 hypothetical protein; 28.2 93 0.002 24.1 3.7 24 72-95 3-26 (72)
41 PRK05274 2-keto-3-deoxyglucona 27.9 1.4E+02 0.0031 29.7 6.1 100 15-122 174-274 (326)
42 TIGR03082 Gneg_AbrB_dup membra 27.7 1.2E+02 0.0026 26.6 4.9 47 55-101 55-105 (156)
43 COG3493 CitS Na+/citrate sympo 27.4 4.5E+02 0.0098 27.1 9.3 102 21-127 83-195 (438)
44 PF12534 DUF3733: Leucine-rich 27.0 65 0.0014 24.5 2.6 43 61-103 12-59 (65)
45 COG1346 LrgB Putative effector 26.6 2.5E+02 0.0054 26.7 7.0 112 42-171 59-171 (230)
46 PF06376 DUF1070: Protein of u 25.3 74 0.0016 21.0 2.3 20 139-158 11-30 (34)
47 PF05145 AmoA: Putative ammoni 24.8 1.3E+02 0.0028 29.8 5.1 47 55-101 33-83 (318)
48 PF06796 NapE: Periplasmic nit 22.9 1.4E+02 0.003 22.0 3.6 21 7-27 24-44 (56)
49 TIGR00783 ccs citrate carrier 22.7 5.9E+02 0.013 25.7 9.3 93 31-126 5-108 (347)
50 COG3105 Uncharacterized protei 22.5 1.1E+02 0.0024 26.4 3.5 26 71-99 6-31 (138)
51 TIGR02972 TMAO_torE trimethyla 21.9 1.6E+02 0.0035 20.9 3.6 22 6-27 15-36 (47)
52 TIGR02973 nitrate_rd_NapE peri 20.9 1.8E+02 0.0039 20.2 3.6 22 6-27 10-31 (42)
53 PF07219 HemY_N: HemY protein 20.8 78 0.0017 25.9 2.3 36 71-106 15-50 (108)
54 PF05552 TM_helix: Conserved T 20.6 1.3E+02 0.0028 21.3 3.1 32 66-97 8-39 (53)
55 KOG2718 Na+-bile acid cotransp 20.4 1.2E+02 0.0026 30.8 3.9 76 42-117 106-188 (371)
56 COG3329 Predicted permease [Ge 20.2 6.7E+02 0.014 25.1 8.7 21 247-267 213-233 (372)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.6e-96 Score=707.18 Aligned_cols=369 Identities=46% Similarity=0.837 Sum_probs=309.9
Q ss_pred CchhHHHHHHH--HHHHHHHHHHHHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHHhHH
Q 016844 1 MGALDLFIASS--IPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFN 78 (381)
Q Consensus 1 m~~~~li~~a~--~pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~ipv~ 78 (381)
||+++++-.|. +|++||++|+.+||++|+++.|+|++|+||.+|+++|++|+|||+|+|+|+++|.|++.+|||||+|
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 89999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCeeeEEeecCCCCchHHHHHHhhhhcCCCCCCChhhhhhhhhHHHHHHHHHhHH
Q 016844 79 VLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAI 158 (381)
Q Consensus 79 ~ll~~~ig~~~g~l~~~~~~~p~~~r~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i 158 (381)
+++++++|.++||+++|++|+|+++||++++||+|||+||||+++++|+|+++++|||++|.|.+||++|++++|++|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhccc-CCccc--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCcccccccchhhhH
Q 016844 159 YLWSYVYNIVRASS-TGISR--ESRTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQLALPCTISEVKGSYSMKQ 235 (381)
Q Consensus 159 ~~ws~g~~ll~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (381)
++|||+||++.+.. +..++ ++.-|..+++.+....+.++++.++..++.+++ +++++.. ..+.+.++
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~e--n~~~~~~--------g~~~~~~~ 231 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKE--NRNNQVV--------GREGKVKR 231 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccc--cCCCcee--------eccccceE
Confidence 99999999765542 21111 110010000111000010111001111111111 1111111 01111112
Q ss_pred HHHHHHHhhhhccccChhHHHHHHHHHHhcchhhhhhhcCCCCChhhHHHHHHHhcCcchhhhhhhhcccccccccCCCC
Q 016844 236 QVKLFFAKINLKSMFAPSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRGLRGSGI 315 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~Pp~iaailgiivg~iPpLr~lf~~~~~pl~~l~ds~~~lG~a~IPl~llvLGa~L~~g~~~s~~ 315 (381)
+.+....+.+++++++||++|+++|+++|.|||||+++|++++|++++||+++++|+++|||++++||+||++|+++|.+
T Consensus 232 ~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~ 311 (408)
T KOG2722|consen 232 RSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSAL 311 (408)
T ss_pred EEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhccc
Confidence 21222233345999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHhHHHHHHHHhhHHHHHHHHHHHHcCCCCCCChHHHHHHHhccCCchhhHHHHhhcccC
Q 016844 316 QKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTNKQPIL 379 (381)
Q Consensus 316 ~~~~iv~i~~~R~iilP~igi~iv~~~~k~g~~~~~Dpl~~fvl~L~~~~PpA~~l~~i~ql~g 379 (381)
+.+++++++++||+++|++|+++|..++|+|.++.|||+|+||++||+++|||||++||||+||
T Consensus 312 ~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g 375 (408)
T KOG2722|consen 312 KTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNG 375 (408)
T ss_pred CceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhh
Confidence 9999999999999999999999999999999999679999999999999999999999999997
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=8.4e-47 Score=378.08 Aligned_cols=344 Identities=31% Similarity=0.446 Sum_probs=265.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHHhHHHHHHHHHHHHH
Q 016844 10 SSIPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSIL 89 (381)
Q Consensus 10 a~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~~ 89 (381)
++++++++++++++||+++ |.|+++++.+|.+|++++++++|||+|++++++.+.+++.++|++++++++.+++++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccCeeeEEeecCCCCchHHHHHHhhhhcCCCCCCChhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhh
Q 016844 90 GWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIVR 169 (381)
Q Consensus 90 g~l~~~~~~~p~~~r~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i~~ws~g~~ll~ 169 (381)
+|++.|++|.|+++|+.+..+|+|+|++++|+.++++++. ++|.+|++++..++.++.|++|+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g-------------~~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFG-------------ERGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhc-------------chhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999954 388999999999999999999999887
Q ss_pred cccCCcccCCC-CCC-CCCCCCC-------CCCCC-C-CCC---CCCCCCCCCcccC-CccccCCC-CCcccccccchhh
Q 016844 170 ASSTGISRESR-TID-EPFSKSV-------ADGSI-S-GTG---SCSEPLLSSKEFL-TPADQLAL-PCTISEVKGSYSM 233 (381)
Q Consensus 170 ~~~~~~~~~~~-~~~-~~~~~~~-------~~~~~-~-~~~---~~~~~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 233 (381)
...++.+++++ .++ ++.+.++ .++++ . .++ ++++.....++.+ +..+..+. +..+.....+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (385)
T PF03547_consen 147 SRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKS 226 (385)
T ss_pred ccccccccccccccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhh
Confidence 66443222111 000 0000000 00000 0 000 0000000000000 00000000 0000001112222
Q ss_pred hHHHHHHHHhhhhccccChhHHHHHHHHHHhcchhhhhhhcCCCCChhhHHHHHHHhcCcchhhhhhhhcccccccccCC
Q 016844 234 KQQVKLFFAKINLKSMFAPSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRGLRGS 313 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~Pp~iaailgiivg~iPpLr~lf~~~~~pl~~l~ds~~~lG~a~IPl~llvLGa~L~~g~~~s 313 (381)
.++.++...+...+.++|||++|+++|++++++|+++.++++ .+++++++++|++++|++++++|++|++++++.
T Consensus 227 ~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~ 301 (385)
T PF03547_consen 227 SNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGPRKS 301 (385)
T ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Confidence 222222222222488999999999999999999999999986 899999999999999999999999999988777
Q ss_pred CCCcchhHhHHHHHHHHhhHHHHHHHHHHHHcCCCCCCChHHHHHHHhccCCchhhHHHHhhcccCC
Q 016844 314 GIQKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTNKQPILS 380 (381)
Q Consensus 314 ~~~~~~iv~i~~~R~iilP~igi~iv~~~~k~g~~~~~Dpl~~fvl~L~~~~PpA~~l~~i~ql~g~ 380 (381)
+.+.+.....+++||+++|++++++++.+. + |+....+++++.++|||++...+|+.||.
T Consensus 302 ~~~~~~~~~~~~~rlii~P~i~~~~~~~~~----l---~~~~~~~~~~~~~~P~a~~~~~~a~~~~~ 361 (385)
T PF03547_consen 302 ALGWKPSIIAVLVRLIILPLIGIGIVFLLG----L---DGDMARVLILQAAMPTAINSFVIASLYGL 361 (385)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHC----C---CHHHHHHHHHhccCCchHHHHHHHHHhCC
Confidence 888888888899999999999999998775 2 66678899999999999999999999975
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.95 E-value=1.9e-27 Score=233.01 Aligned_cols=279 Identities=22% Similarity=0.284 Sum_probs=233.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHHhHHHHHHHHHH
Q 016844 7 FIASSIPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVG 86 (381)
Q Consensus 7 i~~a~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ig 86 (381)
++..+.+++++++++++||+++ |.|.++++..|.+|++++++++|||+|++++++-..++ +++..+++..+.+.+.+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 4677899999999999999999 99999999999999999999999999999999976666 78888888778778888
Q ss_pred HHHHHHHHHHcCCCCCccCeeeEEeecCCCCchHHHHHHhhhhcCCCCCCChhhhhhhhhHHHHHHHHHhHHHHHHhhhh
Q 016844 87 SILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYN 166 (381)
Q Consensus 87 ~~~g~l~~~~~~~p~~~r~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i~~ws~g~~ 166 (381)
.+..++..|.+|.++++++.+..+.+|+|++++++.+..++ || ++|++|.++|+.+++++.|++|+-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G------~~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FG------EKGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cC------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999998877666 55 789999999999999999999998
Q ss_pred hhhcccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCcccccccchhhhHHHHHHHHhhhh
Q 016844 167 IVRASSTGISRESRTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQLALPCTISEVKGSYSMKQQVKLFFAKINL 246 (381)
Q Consensus 167 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
.+...+.+. + +..++.. .
T Consensus 146 ~l~~~~~~~----------------------------------------------------~------~~~~~~~----~ 163 (311)
T COG0679 146 LLARSGGGT----------------------------------------------------N------KSLLSVL----K 163 (311)
T ss_pred HHHHhcCCc----------------------------------------------------h------hHHHHHH----H
Confidence 765431100 0 0011112 1
Q ss_pred ccccChhHHHHHHHHHHhcchhhhhhhcCCCCChhhHHHHHHHhcCcchhhhhhhhcccccccccCCCCCcchhHhHHHH
Q 016844 247 KSMFAPSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRGLRGSGIQKSIVFGIVVA 326 (381)
Q Consensus 247 ~~~~~Pp~iaailgiivg~iPpLr~lf~~~~~pl~~l~ds~~~lG~a~IPl~llvLGa~L~~g~~~s~~~~~~iv~i~~~ 326 (381)
+-+.||+.+|.++|++..... . ..-.++.++++++|++++|+.++++|..|+. .+.++...+.+......
T Consensus 164 ~~~~nP~i~a~i~g~~~~~~~----i-----~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~~~~~~~~~~~~~ 233 (311)
T COG0679 164 KLLTNPLIIALILGLLLNLLG----I-----SLPAPLDTAVDLLASAASPLALIALGLSLAF-LKLKGSKPPIILIALSL 233 (311)
T ss_pred HHHhCcHHHHHHHHHHHHHcC----C-----CCcHHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhccccchhHHHHHHH
Confidence 567899999999999998755 1 1122899999999999999999999999988 45567777888888888
Q ss_pred HHHHhhHHHHHHHHHHHHcCCCCCCChHHHHHHHhccCCchhhHHHHhhcccCC
Q 016844 327 RYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTNKQPILS 380 (381)
Q Consensus 327 R~iilP~igi~iv~~~~k~g~~~~~Dpl~~fvl~L~~~~PpA~~l~~i~ql~g~ 380 (381)
|+++.|++...+.+.+. + ++...-|+.++.++|+|.|--.+++.+|.
T Consensus 234 kll~~Pl~~~~~~~~~~----l---~~~~~~v~vl~~a~P~A~~~~v~a~~~~~ 280 (311)
T COG0679 234 KLLLAPLVALLVAKLLG----L---SGLALQVLVLLSAMPTAVNAYVLARQYGG 280 (311)
T ss_pred HHHHHHHHHHHHHHHcC----C---ChHHHHHHHHHhhCcHHhHHHHHHHHhCC
Confidence 99999999999766543 3 44444899999999999999999998764
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.93 E-value=1.5e-24 Score=213.20 Aligned_cols=291 Identities=16% Similarity=0.126 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHHhHHHHHHHH
Q 016844 6 LFIASSIPVLKVLLITALGSYL-ALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFL 84 (381)
Q Consensus 6 li~~a~~pv~kVlli~~~G~~l-A~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ 84 (381)
.+|..+..++.++++.++||++ . |+|+++++..|.+|++++++.+|||+|+++++.-..++....+...+.....+.
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677889999999999999999 8 999999999999999999999999999999985333234444444444556667
Q ss_pred HHHHHHHHHHH-HcCCCCCccCeeeEEeecCCCCchHHHHHHhhhhcCCCCCCChhhhhhhhhHHHHHHHHHhHHHHHHh
Q 016844 85 VGSILGWIVVQ-FTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSY 163 (381)
Q Consensus 85 ig~~~g~l~~~-~~~~p~~~r~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i~~ws~ 163 (381)
+.++++|++.| .+|.+++.++....+++++|++.+-+-+++++ ||++. ..+..|...+.....+..|++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G~~~---~~~~~~~~~~~~~~~~~~~~~ 149 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FGEEG---AKILIAALFIDTGAVLMTIAL 149 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hcccc---hhhhHHHHHHHhccchhHHHH
Confidence 78899999998 88999999999999999999999999999999 55321 113567766666667789999
Q ss_pred hhhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCcccccccchhhhHHHHHHHHh
Q 016844 164 VYNIVRASSTGISRESRTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQLALPCTISEVKGSYSMKQQVKLFFAK 243 (381)
Q Consensus 164 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
++-+.....++ .+ + +.++.++.. .+.+
T Consensus 150 ~~~~~~~~~~~------~~--~---------------------------------------~~~~~~~~~----~~~~-- 176 (321)
T TIGR00946 150 GLFLVSEDGAG------GE--G---------------------------------------SGESTRLML----IFVW-- 176 (321)
T ss_pred HHHHhcccccc------cc--c---------------------------------------cchhHHHHH----HHHH--
Confidence 87543211000 00 0 000111111 1122
Q ss_pred hhhccccChhHHHHHHHHHHhcchhhhhhhcCCCCChhhHHHHHHHhcCcchhhhhhhhcccccccccCCCCCcchhHhH
Q 016844 244 INLKSMFAPSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRGLRGSGIQKSIVFGI 323 (381)
Q Consensus 244 ~~~~~~~~Pp~iaailgiivg~iPpLr~lf~~~~~pl~~l~ds~~~lG~a~IPl~llvLGa~L~~g~~~s~~~~~~iv~i 323 (381)
.+-+.||+.+|.++|+++..... + .=.++.++++++|++++|+.++++|..+.. ++.+.+++.+...
T Consensus 177 --~~~~~nP~iia~i~Gl~~~~~~i-~--------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~--~~~~~~~~~~~~~ 243 (321)
T TIGR00946 177 --KKLIKFPPLWAPLLSVILSLVGF-K--------MPGLILKSISILSGATTPMALFSLGLALSP--RKIKLGVRDAILA 243 (321)
T ss_pred --HHHHhCCChHHHHHHHHHHHHhh-c--------CcHHHHHHHHHHHHHHHHHHHHHHHHhhCh--hhhccChHHHHHH
Confidence 14457899999999999998762 1 125899999999999999999999999864 3333456788888
Q ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCCCCChHHHHHHHhccCCchhhHHHHhhcccCCC
Q 016844 324 VVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTNKQPILSS 381 (381)
Q Consensus 324 ~~~R~iilP~igi~iv~~~~k~g~~~~~Dpl~~fvl~L~~~~PpA~~l~~i~ql~g~~ 381 (381)
++.|+++.|++...+.+.+ +. |+...-+++++.++|||.+-..+++.||.+
T Consensus 244 ~~~klil~P~i~~~~~~~~------~l-~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~ 294 (321)
T TIGR00946 244 LIVRFLVQPAVMAGISKLI------GL-RGLELSVAILQAALPGGAVAAVLATEYEVD 294 (321)
T ss_pred HHHHHHHHHHHHHHHHHHh------CC-ChHHHHHHHHHHcCChhhHHHHHHHHhCCC
Confidence 9999999999997776532 33 778889999999999999999999998753
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.90 E-value=2.9e-22 Score=196.56 Aligned_cols=275 Identities=14% Similarity=0.148 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHHhHHHHHHHHHHHHHHHH
Q 016844 13 PVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSILGWI 92 (381)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~~g~l 92 (381)
.++-++++.++||++. |+|+++++..|.+|++++++.+||++|+++.+. +.++..+-|.+.+..++.+...++++|+
T Consensus 8 ~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (314)
T PRK09903 8 DLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFSWF 84 (314)
T ss_pred HHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3556678999999999 999999999999999999999999999999874 5555553455567788888888888988
Q ss_pred HHH-HcCCCCCccCeeeEEeecCCCCchHHHHHHhhhhcCCCCCCChhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhcc
Q 016844 93 VVQ-FTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIVRAS 171 (381)
Q Consensus 93 ~~~-~~~~p~~~r~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i~~ws~g~~ll~~~ 171 (381)
+.| .+|-+++.++....+++++|++.+-+-+++++ ||++.. -|+.|..++ .+.+++.|++|.-+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~~---~~~~~a~~~-~~~~~~~~~~g~~~~~~~ 153 (314)
T PRK09903 85 GCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSVS---TGLVVAIIS-IIVNAITIPIGLYLLNPS 153 (314)
T ss_pred HHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchhh---hhhHHHHHH-HHHHHHHHHHHHHHHccc
Confidence 875 66777777778888889999999999999998 664311 155555544 357889999987666432
Q ss_pred cCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCcccccccchhhhHHHHHHHHhhhhccccC
Q 016844 172 STGISRESRTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQLALPCTISEVKGSYSMKQQVKLFFAKINLKSMFA 251 (381)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (381)
... + + + + +..++.++ +-+.|
T Consensus 154 ~~~----~--~-------------------------------------------~-~--~~~~~~l~--------~~~~n 173 (314)
T PRK09903 154 SGA----D--G-------------------------------------------K-K--NSNLSALI--------SAAKE 173 (314)
T ss_pred ccc----c--c-------------------------------------------c-c--chHHHHHH--------HHHhc
Confidence 100 0 0 0 0 00011121 34678
Q ss_pred hhHHHHHHHHHHhcchhhhhhhcCCCCChhhHHHHHHHhcCcchhhhhhhhcccccccccCCCCCcchhHhHHHHHHHHh
Q 016844 252 PSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRGLRGSGIQKSIVFGIVVARYVAL 331 (381)
Q Consensus 252 Pp~iaailgiivg~iPpLr~lf~~~~~pl~~l~ds~~~lG~a~IPl~llvLGa~L~~g~~~s~~~~~~iv~i~~~R~iil 331 (381)
|+.+|.++|+++.+.. = +.-.++.++++++|++++|+.++.+|++|++... +.. +......+.|+++.
T Consensus 174 P~iia~~~gl~~~l~~--------i-~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~--~~~-~~~~~~~~~Kli~~ 241 (314)
T PRK09903 174 PVVWAPVLATILVLVG--------V-KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKF--EFS-AEIAYNTFLKLILM 241 (314)
T ss_pred hHHHHHHHHHHHHHcC--------C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccc-HHHHHHHHHHHHHH
Confidence 9999999999976532 1 1225999999999999999999999999987422 222 34456788899999
Q ss_pred hHHHHHHHHHHHHcCCCCCCChHHHHHHHhccCCchhhHHHHhhcccCC
Q 016844 332 PLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTNKQPILS 380 (381)
Q Consensus 332 P~igi~iv~~~~k~g~~~~~Dpl~~fvl~L~~~~PpA~~l~~i~ql~g~ 380 (381)
|++...+...+ +- |+...=+++++.++|+|.+-.-+++-||.
T Consensus 242 P~i~~~~~~~~------~l-~~~~~~v~vl~aa~P~a~~~~i~A~~y~~ 283 (314)
T PRK09903 242 PLALLLVGMAC------HL-NSEHLQMMVLAGALPPAFSGIIIASRFNV 283 (314)
T ss_pred HHHHHHHHHHc------CC-CcHHHHHHHHHHcccHHHHHHHHHHHHcc
Confidence 99886655432 33 66677799999999999999999998875
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.56 E-value=0.27 Score=47.82 Aligned_cols=135 Identities=13% Similarity=0.159 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCChhHHhh---hcchhhhhhhhHHHHHhhhccccccch-hhhhHHhHHHHHHHHH
Q 016844 10 SSIPVLKVLLITALGSYLALDHVNILGEDARKH---INNLVFYVFNPALVASNLANTITYESM-LKLWFMPFNVLITFLV 85 (381)
Q Consensus 10 a~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~---ls~l~~~vflP~LiFs~la~~lt~~~l-~~~w~ipv~~ll~~~i 85 (381)
..+ ..-+++-...|..+. |. .+ +.+|. ++.+... ++=++++.-++.+. +++ .+.|.+-+-.++...+
T Consensus 137 ~~~-~~~v~vPl~lG~~~r--~~--~p-~~~~~~~~~~~~s~~-~l~liv~~~~~~~~--~~i~~~~~~~~~~~~ll~~~ 207 (286)
T TIGR00841 137 GLS-LVAVLIPVSIGMLVK--HK--LP-QIAKIILKVGLISVF-LLSVIIAVVGGINV--ENLATIGPLLLLVGILLPLA 207 (286)
T ss_pred HHH-HHHHHHHHHHHHHHH--HH--hH-HHHHHHHhCchHHHH-HHHHHHHHHHHhhH--HHHHHhhHHHHHHHHHHHHH
Confidence 444 677888899999887 33 12 22222 3333222 22234444443332 122 2234444446777899
Q ss_pred HHHHHHHHHHHcCCCCCccCeeeEEeecCCCCchHHHHHHhhhhcCCCCCCChhhhhhhhhHHHHHHHHHhHHHHHHh
Q 016844 86 GSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSY 163 (381)
Q Consensus 86 g~~~g~l~~~~~~~p~~~r~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i~~ws~ 163 (381)
|+.+||++.|.+|.+++.|.-+.-.++..|++ +-+.+..+. |+ ++ ...-...|...+...+.++.+-+
T Consensus 208 ~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~-~~-~a~~~~~~~v~~~~~~~~~a~~~ 275 (286)
T TIGR00841 208 GFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FS-PE-VAVPSAIFPLIYALFQLAFALLF 275 (286)
T ss_pred HHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cC-hH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988 444443332 43 21 23334567666666666665444
No 7
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=93.94 E-value=0.073 Score=51.83 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=63.7
Q ss_pred chhhhhhhhccccccc-ccCCCCCcchhHhHHHHHHHHhhHHHHHHHHHHHHcCCCCCCChHHHHHHHhccCCchhhHHH
Q 016844 294 AIPTVTLVVGGNLLRG-LRGSGIQKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIG 372 (381)
Q Consensus 294 ~IPl~llvLGa~L~~g-~~~s~~~~~~iv~i~~~R~iilP~igi~iv~~~~k~g~~~~~Dpl~~fvl~L~~~~PpA~~l~ 372 (381)
.+..+++.+|.++... +++....++.+...++.|++++|++...+.+.+ + .||.+...+++..++|+|.+-.
T Consensus 13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~------~-l~~~~~~glvL~~~~P~~~~s~ 85 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVF------K-LPPELAVGVLIVGCCPGGTASN 85 (286)
T ss_pred HHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh------C-CCHHHHHHHHheeeCCCchHHH
Confidence 3777889999999752 222234557788888999999999998877644 3 3899999999999999999999
Q ss_pred HhhcccCC
Q 016844 373 TNKQPILS 380 (381)
Q Consensus 373 ~i~ql~g~ 380 (381)
.+|+++|.
T Consensus 86 v~t~~~~g 93 (286)
T TIGR00841 86 VFTYLLKG 93 (286)
T ss_pred HHHHHhCC
Confidence 99988764
No 8
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=85.22 E-value=1.7 Score=43.29 Aligned_cols=109 Identities=14% Similarity=0.037 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhhccc-----CCCChhHHhhhcchhhhhhhhHHHHHhhhccc--cccchhhhhHHhHHHHHHHHHHH
Q 016844 15 LKVLLITALGSYLALDHV-----NILGEDARKHINNLVFYVFNPALVASNLANTI--TYESMLKLWFMPFNVLITFLVGS 87 (381)
Q Consensus 15 ~kVlli~~~G~~lA~~~~-----gil~~~~~k~ls~l~~~vflP~LiFs~la~~l--t~~~l~~~w~ipv~~ll~~~ig~ 87 (381)
.-+++-...|..+.+... +...++.++.++.+.. +++=..+|...+.+- -.++..+.+.+-+-.++.+.+++
T Consensus 182 ~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~ 260 (328)
T TIGR00832 182 IYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMF 260 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 334555667776653111 1111233344554443 233334444444442 11222223333334667889999
Q ss_pred HHHHHHHHHcCCCCCccCeeeEEeecCCCCchHHHHHHhh
Q 016844 88 ILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAV 127 (381)
Q Consensus 88 ~~g~l~~~~~~~p~~~r~~v~~~~~fgN~~~LPl~li~sl 127 (381)
.+||+++|.+|.+++.|.-++-+++-.|+ ++++.-|.
T Consensus 261 ~lg~~~~r~~~l~~~~~~a~~~e~g~qN~---~lai~lA~ 297 (328)
T TIGR00832 261 FLTFALAKKLGLPYSITAPAAFTGASNNF---ELAIAVAI 297 (328)
T ss_pred HHHHHHHHHhCcChhhhhhheehhhhhhH---HHHHHHHH
Confidence 99999999999999999999999998885 34444444
No 9
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=84.29 E-value=4.2 Score=40.35 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=40.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHcCCCCCccCeeeEEeecCCCC
Q 016844 74 FMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLG 117 (381)
Q Consensus 74 ~ipv~~ll~~~ig~~~g~l~~~~~~~p~~~r~~v~~~~~fgN~~ 117 (381)
.+-+..+++..+|+..||...|.+|.++..|.-+.-|++-.|++
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~ 267 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLG 267 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHH
Confidence 46677888889999999999999999999999999999999986
No 10
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=80.20 E-value=11 Score=38.43 Aligned_cols=86 Identities=14% Similarity=0.264 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhh----HHhHHHHHHHHHHHHHHH
Q 016844 16 KVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLW----FMPFNVLITFLVGSILGW 91 (381)
Q Consensus 16 kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w----~ipv~~ll~~~ig~~~g~ 91 (381)
-++++...|.+++ ..|++|.+....+.+.+.+.++|.-++==+ -+.+++++.+.. .+-+...+.+++|..+++
T Consensus 27 ~~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlL-l~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~ 103 (378)
T PF05684_consen 27 GAVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLL-LSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAF 103 (378)
T ss_pred HHHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHH-HHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999 999996566667778888888887666544 334444444433 344445556677777777
Q ss_pred HHHHHcCCCCCcc
Q 016844 92 IVVQFTRPPSHFR 104 (381)
Q Consensus 92 l~~~~~~~p~~~r 104 (381)
.+.+..--|..|+
T Consensus 104 ~l~~~~l~~~~wk 116 (378)
T PF05684_consen 104 LLFGGFLGPEGWK 116 (378)
T ss_pred HHHhhcccchHHH
Confidence 7766553344343
No 11
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=74.40 E-value=4.4 Score=40.18 Aligned_cols=80 Identities=18% Similarity=0.121 Sum_probs=64.4
Q ss_pred Ccchhhhhhhhccccccc-ccCCCCCcchhHhHHHHHHHHhhHHHHHHHHHHHHcCCCCCCChHHHHHHHhccCCchhhH
Q 016844 292 DGAIPTVTLVVGGNLLRG-LRGSGIQKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMN 370 (381)
Q Consensus 292 ~a~IPl~llvLGa~L~~g-~~~s~~~~~~iv~i~~~R~iilP~igi~iv~~~~k~g~~~~~Dpl~~fvl~L~~~~PpA~~ 370 (381)
..++-++++..|.+|.+. .+..-.+|+..+..++.-++++|++++++.+... - ||-..-=+++..|.|..++
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~------l-~~~l~~Gl~ll~~~Pggv~ 113 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP------L-PPELAVGLLLLGCCPGGVA 113 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC------C-CHHHHHhHHheeeCCCchh
Confidence 345677889999999861 2223357788999999999999999999998654 3 8878888889999999999
Q ss_pred HHHhhccc
Q 016844 371 IGTNKQPI 378 (381)
Q Consensus 371 l~~i~ql~ 378 (381)
.-.+|++.
T Consensus 114 S~~~t~lA 121 (319)
T COG0385 114 SNAMTYLA 121 (319)
T ss_pred HHHHHHHh
Confidence 88888876
No 12
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=69.26 E-value=12 Score=37.06 Aligned_cols=112 Identities=14% Similarity=0.156 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcchhhhhhhcCCCCChhhHHHHHHHhcCcchhhhhhhhcccccc-cccCCCCCcchhHhHHHHHHHHhh
Q 016844 254 TIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLR-GLRGSGIQKSIVFGIVVARYVALP 332 (381)
Q Consensus 254 ~iaailgiivg~iPpLr~lf~~~~~pl~~l~ds~~~lG~a~IPl~llvLGa~L~~-g~~~s~~~~~~iv~i~~~R~iilP 332 (381)
.++.++++.+|..=|-. +...+++.. ++.-...|.++.++-|.+|.+ .++..-..+|....+...=+++.|
T Consensus 4 l~~l~~ai~la~~~P~~------g~~~~~~~~--~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 4 LLGLLLAILLAYLFPAP------GAAGGVIKP--EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred HHHHHHHHHHHHHcCcc------cccCCccch--hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 56667777776544332 122223321 122233488999999999865 222234667888889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCChHHHHHHHhccCCchhhHHH-Hhhccc
Q 016844 333 LVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIG-TNKQPI 378 (381)
Q Consensus 333 ~igi~iv~~~~k~g~~~~~Dpl~~fvl~L~~~~PpA~~l~-~i~ql~ 378 (381)
+++.++...... + .|+-+..=+++..|+|+.++.+ .+|+.-
T Consensus 76 ll~~~~~~l~~~--~---~~~~l~~Gl~~~~~lPtTv~S~v~~T~~A 117 (313)
T PF13593_consen 76 LLGFGLSRLFPA--F---LPPELALGLLILACLPTTVSSSVVLTRLA 117 (313)
T ss_pred HHHHHHHHHhhc--c---CCHHHHHHHHHHhhCCchhhHHHHHHHHc
Confidence 999999887753 2 2566999999999999987765 466654
No 13
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=69.00 E-value=16 Score=36.23 Aligned_cols=109 Identities=11% Similarity=-0.025 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcchhhhhhhcCCCCChhhHHHHHHHhcCcchh------hhhhhhcccccc-cccCCCCCcchhHhHHHH
Q 016844 254 TIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIP------TVTLVVGGNLLR-GLRGSGIQKSIVFGIVVA 326 (381)
Q Consensus 254 ~iaailgiivg~iPpLr~lf~~~~~pl~~l~ds~~~lG~a~IP------l~llvLGa~L~~-g~~~s~~~~~~iv~i~~~ 326 (381)
.+++++|+++|..-|-. ..+... . .+.....| .+++.+|.+|.. -.++.--.+|.++...+.
T Consensus 13 ~~~~i~~~~~g~~~P~~---------~~~~~~-~-~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~ 81 (328)
T TIGR00832 13 FLAIAAGVGLGVLFPSV---------FQALAA-L-EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFI 81 (328)
T ss_pred HHHHHHHHHHHHhcccc---------HHHHHH-H-HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHH
Confidence 56777888888854321 112211 0 12233444 467777788753 122233456889999999
Q ss_pred HHHHhhHHHHHHHHHHHHcCCCCCCChHHHHHHHhccCCchhhHHHHhhcccC
Q 016844 327 RYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTNKQPIL 379 (381)
Q Consensus 327 R~iilP~igi~iv~~~~k~g~~~~~Dpl~~fvl~L~~~~PpA~~l~~i~ql~g 379 (381)
-++++|+++.++.+.+- + ++|-+..=+++..|.|.+..--.+|.+.+
T Consensus 82 qfvi~Plla~~l~~l~~-----~-~~p~l~~GliLv~~~Pgg~~S~v~T~lAk 128 (328)
T TIGR00832 82 NWIIGPFLMFLLAWLFL-----R-DLFEYIAGLILLGLARCIAMVFVWNQLAK 128 (328)
T ss_pred HHHHHHHHHHHHHHHHc-----C-CCHHHHHHHHHHHhcchHHHHHHHHHHcC
Confidence 99999999999987642 2 37779999999999999987777776653
No 14
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=66.52 E-value=4.6 Score=36.50 Aligned_cols=79 Identities=15% Similarity=0.067 Sum_probs=53.0
Q ss_pred hhhhhhhhcccccc-cccCCCCCcchhHhHHHHHHHHhhHHHHHHHHHHHHcCCCCCCChHHHHHHHhccCCchhhHHHH
Q 016844 295 IPTVTLVVGGNLLR-GLRGSGIQKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGT 373 (381)
Q Consensus 295 IPl~llvLGa~L~~-g~~~s~~~~~~iv~i~~~R~iilP~igi~iv~~~~k~g~~~~~Dpl~~fvl~L~~~~PpA~~l~~ 373 (381)
+-.+++.+|.++.. -.++..-.+|.++..++..++++|+++.++.+.+.+ +||-+..-+++..+.|.|...-.
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~------~~~~~~~Gl~l~~~~P~~~~s~~ 77 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLP------LSPALALGLLLVAACPGGPASNV 77 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--------HHHHHHHHHHHHS-B-THHHH
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHhcCCcHHHHHH
Confidence 44566777777753 122222346778888999999999999999854433 48889999999999999888777
Q ss_pred hhcccC
Q 016844 374 NKQPIL 379 (381)
Q Consensus 374 i~ql~g 379 (381)
.|.+.|
T Consensus 78 ~t~l~~ 83 (187)
T PF01758_consen 78 FTYLAG 83 (187)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 776643
No 15
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=60.18 E-value=1.4e+02 Score=31.54 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHHhHHHHHHH------HHHH
Q 016844 14 VLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITF------LVGS 87 (381)
Q Consensus 14 v~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~------~ig~ 87 (381)
-+.+++++..|.=.| .|.|+++.-.||.+++.-=.+.+|.++|.-+-+++-.| .--+-.+|+.+++.. +.|.
T Consensus 80 PLG~Vlv~mlgvgvA-E~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sniasD-Ag~Vvl~PL~a~iF~~~GRhPlaGi 157 (502)
T PF03806_consen 80 PLGLVLVMMLGVGVA-EKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNIASD-AGYVVLPPLAAMIFAAVGRHPLAGI 157 (502)
T ss_pred cHHHHHHHHHHHHHH-HHhchHHHHHHHHhccCCcchhhHHHHHHHHHhccccc-ceeEeHHhhHHHHHHHcCCChHHHH
Confidence 345555565664444 39999999999999999999999999999998888644 333446888777766 7788
Q ss_pred HHHHHHH
Q 016844 88 ILGWIVV 94 (381)
Q Consensus 88 ~~g~l~~ 94 (381)
..|+..+
T Consensus 158 ~~afa~v 164 (502)
T PF03806_consen 158 AAAFAGV 164 (502)
T ss_pred HHHHHHH
Confidence 8888754
No 16
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=57.83 E-value=1.4e+02 Score=29.51 Aligned_cols=105 Identities=21% Similarity=0.217 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCChhHHh--hhcchhhhhhhhHHHHHhhhccccc---cch--hhhhHHhHHHHHHHH
Q 016844 12 IPVLKVLLITALGSYLALDHVNILGEDARK--HINNLVFYVFNPALVASNLANTITY---ESM--LKLWFMPFNVLITFL 84 (381)
Q Consensus 12 ~pv~kVlli~~~G~~lA~~~~gil~~~~~k--~ls~l~~~vflP~LiFs~la~~lt~---~~l--~~~w~ipv~~ll~~~ 84 (381)
+=++++++-..+|-.+. |. +.+...| ..-+..=...+-.++++...++..- +++ .++..+-...+....
T Consensus 162 ~L~~~vllP~~~Gq~~r--~~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (313)
T PF13593_consen 162 KLVLTVLLPLVLGQLLR--RW--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLL 237 (313)
T ss_pred HHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHH
Confidence 34566777777888665 32 3333222 1122223344455666666555321 222 223333344555667
Q ss_pred HHHHHHHHHHHHcCCCCCccCeeeEEeecCCCCchHHHH
Q 016844 85 VGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLII 123 (381)
Q Consensus 85 ig~~~g~l~~~~~~~p~~~r~~v~~~~~fgN~~~LPl~l 123 (381)
+.+.++|...|.+|.+++.|--++.|++ -.|+|+++
T Consensus 238 ~~l~~~~~~~r~~~~~~~d~iA~~F~gs---~Ksl~~gv 273 (313)
T PF13593_consen 238 VVLVLGWLAARLLGFSRPDRIAVLFCGS---QKSLALGV 273 (313)
T ss_pred HHHHHHHHHHhhcCCChhhEEEEEEEcC---cCcchhHH
Confidence 8888999999999999988777666665 33445555
No 17
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=57.33 E-value=42 Score=35.52 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHHhHHHHHHH------HHH
Q 016844 13 PVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITF------LVG 86 (381)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~------~ig 86 (381)
|-+.+++++..|.=.| .|.|.++.-.+|.+.+.-=...+|..+|.-+-+++- +|.--+-++|+.+.+.. ++|
T Consensus 89 ~pLG~vlv~mlgvgva-e~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~a-sdaGyVvl~PL~a~if~a~Gr~PlaG 166 (508)
T PRK11339 89 APLGAILALVLGAGLA-ERVGLLPALMVKMASHVNARYASYMVLFIAFFSHIS-SDAALVIMPPMGALIFLAVGRHPVAG 166 (508)
T ss_pred CcHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcCCChHHH
Confidence 3455666666665444 399999999999999998888888887766655553 23333678899887776 666
Q ss_pred HHHHHHHH
Q 016844 87 SILGWIVV 94 (381)
Q Consensus 87 ~~~g~l~~ 94 (381)
.+.++..+
T Consensus 167 ia~~fagv 174 (508)
T PRK11339 167 LLAAIAGV 174 (508)
T ss_pred HHHHHHHH
Confidence 77776643
No 18
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=51.33 E-value=71 Score=31.71 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhH-HhHHHHHHHHHHHHHHH
Q 016844 13 PVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWF-MPFNVLITFLVGSILGW 91 (381)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~-ipv~~ll~~~ig~~~g~ 91 (381)
+++..++-..+|.++. . ++++.|+.+++-+-. ..|-.. --+|.+++++++.+.++ .-+..++...+...+++
T Consensus 165 ~lv~lilpILiGmilG--N---ld~~~~~~l~~Gi~f-~I~f~~-f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~ 237 (312)
T PRK12460 165 ALVAALLPLVLGMILG--N---LDPDMRKFLTKGGPL-LIPFFA-FALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNI 237 (312)
T ss_pred HHHHHHHHHHHHHHHh--c---cchhhHHHHhccceE-eHHHHH-HHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4466888899999887 3 666677766665332 334333 35899999999998854 44445566678888899
Q ss_pred HHHHHcCCCCCccCeeeEEeecCCCCchHHHHH
Q 016844 92 IVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIII 124 (381)
Q Consensus 92 l~~~~~~~p~~~r~~v~~~~~fgN~~~LPl~li 124 (381)
++.|.+|.+++. ....+...||.=-=|-++.
T Consensus 238 ~i~rllg~~~~~--g~li~stAGnAIcgpAAVa 268 (312)
T PRK12460 238 FADRLVGGTGIA--GAAASSTAGNAVATPLAIA 268 (312)
T ss_pred HHHHHhCCChhH--HHHHHHHhhHHHHHHHHHH
Confidence 999999887744 2222233677655555553
No 19
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=50.15 E-value=34 Score=34.44 Aligned_cols=84 Identities=7% Similarity=0.104 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhcccCCCChhHHhhhcc---hhhhhhhhHHHHHhhh-ccccccchhhhhHHhHH-HHHHHHHHH-HHH
Q 016844 17 VLLITALGSYLALDHVNILGEDARKHINN---LVFYVFNPALVASNLA-NTITYESMLKLWFMPFN-VLITFLVGS-ILG 90 (381)
Q Consensus 17 Vlli~~~G~~lA~~~~gil~~~~~k~ls~---l~~~vflP~LiFs~la-~~lt~~~l~~~w~ipv~-~ll~~~ig~-~~g 90 (381)
-..+...|+++. ..|+++++...+.++ .+...+++.+++. ++ ...+++++.+.-=.|.. .++...+|. +.+
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~g-iGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVG-VGVSYIDLDDLVAALSWQFVVICLSVVVAMILGG 283 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cccccCCHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence 456677888888 999999987766554 4455577766652 22 45788888886412222 223334444 445
Q ss_pred HHHHHHcCCCCCc
Q 016844 91 WIVVQFTRPPSHF 103 (381)
Q Consensus 91 ~l~~~~~~~p~~~ 103 (381)
+++.|+++.=+-+
T Consensus 284 ~lvGKllG~YPiE 296 (347)
T TIGR00783 284 AFLGKLMGMYPVE 296 (347)
T ss_pred HHHHHHhCCChHH
Confidence 6888999876633
No 20
>PRK11677 hypothetical protein; Provisional
Probab=45.86 E-value=23 Score=30.77 Aligned_cols=25 Identities=32% Similarity=0.668 Sum_probs=19.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHcCCC
Q 016844 73 WFMPFNVLITFLVGSILGWIVVQFTRPP 100 (381)
Q Consensus 73 w~ipv~~ll~~~ig~~~g~l~~~~~~~p 100 (381)
|+++ ++.+++|+++|+++.|++..-
T Consensus 3 W~~a---~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYA---LIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHH---HHHHHHHHHHHHHHHhhccch
Confidence 5444 478899999999999975543
No 21
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=45.72 E-value=2.6e+02 Score=29.73 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=67.2
Q ss_pred HHHHHHH-HHHHHHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHHhHHHHHHH------
Q 016844 11 SIPVLKV-LLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITF------ 83 (381)
Q Consensus 11 ~~pv~kV-lli~~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~------ 83 (381)
+-|+.-| +.+.++|+ +- |.|.++.-.+|.+++.-=...+|..+|.-+-+++- +|.--+-++|+.+.+..
T Consensus 84 f~pLg~vlv~mlGvGv-ae--~tG~i~a~i~~~v~~~p~~~~t~ivv~~gv~s~~a-sdaG~vvl~PL~a~if~a~Gr~P 159 (513)
T TIGR00819 84 FAPLGAILALLLGAGI-AE--KSGLIPALMRKLASHSNAKLASFMVLFIAFFSHIA-SDAALVILIPLGALIFHALGRHP 159 (513)
T ss_pred CccHHHHHHHHHHHHH-HH--HhcHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcCCCh
Confidence 4455555 44555555 33 99999999999999998888888887655544443 23333778899888877
Q ss_pred HHHHHHHHHHHHHcCCCCCccCeeeEEeecCCCCchHHHHHHhhhh
Q 016844 84 LVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCK 129 (381)
Q Consensus 84 ~ig~~~g~l~~~~~~~p~~~r~~v~~~~~fgN~~~LPl~li~sl~~ 129 (381)
++|.+.+++.+- +++.++-.-+=++.+-..+.|..++
T Consensus 160 laGia~~fagvs---------~GFsAnl~~~~~Dpll~Git~~aA~ 196 (513)
T TIGR00819 160 LAGLAAAFAGVG---------CGFSANLFIGTIDPLLAGISQEAAA 196 (513)
T ss_pred HHHHHHHHHHHh---------hhhhcccccccccHHHHHHHHHHHH
Confidence 667777776441 1222222223344555566666665
No 22
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=44.09 E-value=3.6e+02 Score=27.29 Aligned_cols=108 Identities=15% Similarity=0.214 Sum_probs=58.0
Q ss_pred HHHHhhhccccccchhhhhH--HhHHH--HHHHHHHHHHHHHHHHHcCCCCCccCeeeEE----eecCCCCchHHHHHHh
Q 016844 55 LVASNLANTITYESMLKLWF--MPFNV--LITFLVGSILGWIVVQFTRPPSHFRGLIVGC----CAAGNLGNMPLIIIPA 126 (381)
Q Consensus 55 LiFs~la~~lt~~~l~~~w~--ipv~~--ll~~~ig~~~g~l~~~~~~~p~~~r~~v~~~----~~fgN~~~LPl~li~s 126 (381)
..|+.++-.-+.+++++-|- .+.+. .+...+..++|..+.+++..++. .+..... ++.|.... +=+.
T Consensus 72 ~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~-~Gll~Gsi~f~GGhGTAaa----~g~~ 146 (368)
T PF03616_consen 72 IFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPL-FGLLAGSIGFTGGHGTAAA----FGPT 146 (368)
T ss_pred HHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-HHHHhccccccCCccHHHH----HHHH
Confidence 34777887777777777652 22211 22346778888888899888764 2332221 11222111 1122
Q ss_pred hhhcCCCCCCChhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhccc
Q 016844 127 VCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIVRASS 172 (381)
Q Consensus 127 l~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i~~ws~g~~ll~~~~ 172 (381)
+.+. +| -+.+.+-|+++..+....|.++==-++-+++|+..
T Consensus 147 fe~~----~G-~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 147 FEEL----YG-WEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHh----cC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2211 22 13477888898888887666643333333555543
No 23
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=44.00 E-value=1.2e+02 Score=30.74 Aligned_cols=103 Identities=12% Similarity=0.113 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCh-hHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHHhHHHHHHHHHHHHHHHH
Q 016844 14 VLKVLLITALGSYLALDHVNILGE-DARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSILGWI 92 (381)
Q Consensus 14 v~kVlli~~~G~~lA~~~~gil~~-~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~~g~l 92 (381)
..-+++++.+|...+ ....... .+...++....++ .|.-+|..-+++++.+-..+.+..++...+-.++=++
T Consensus 240 ~~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~-----ffa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~ 312 (378)
T PF05684_consen 240 TWLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYL-----FFAVIGASADISELLDAPSLFLFGFIILAIHLLLMLI 312 (378)
T ss_pred HHHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHH-----HHHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345677778887776 3222222 4555566555554 4788999999999988545556666666777888888
Q ss_pred HHHHcCCCCCccCeeeEEeecCCCCchHHHHHHhh
Q 016844 93 VVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAV 127 (381)
Q Consensus 93 ~~~~~~~p~~~r~~v~~~~~fgN~~~LPl~li~sl 127 (381)
+.|++|.|. ..+.-++=.|+|-=+.+-..|-
T Consensus 313 ~~kl~k~~l----~~~~vAS~AnIGGpaTA~a~A~ 343 (378)
T PF05684_consen 313 LGKLFKIDL----FELLVASNANIGGPATAPAVAA 343 (378)
T ss_pred HHHHHCCCH----HHHHHHhhcccCCcchHHHHHH
Confidence 999999988 5555555667777666654444
No 24
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=43.44 E-value=64 Score=33.10 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=58.4
Q ss_pred CChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHcC-CCCCccCeeeEEeec
Q 016844 35 LGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSILGWIVVQFTR-PPSHFRGLIVGCCAA 113 (381)
Q Consensus 35 l~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~~g~l~~~~~~-~p~~~r~~v~~~~~f 113 (381)
++.+..+.++.+...+|+=+=+ -++.+.++.++|. |+.+++...+-...-+..--.+| .+|++..-+++++-+
T Consensus 270 ~~~~~i~~I~~~sLdlfl~~Al-----msL~L~~l~~~a~-Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~ 343 (398)
T TIGR00210 270 VAERAVSVIGNVSLSLFLAIAL-----MSLQLWELADLAG-PIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHC 343 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHH-----HhCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccc
Confidence 4445888888888888865433 3577888888864 77665555433333333333444 457777777777666
Q ss_pred CC-CCchHHHH--HHhhhhc
Q 016844 114 GN-LGNMPLII--IPAVCKE 130 (381)
Q Consensus 114 gN-~~~LPl~l--i~sl~~~ 130 (381)
|- .|.-|.++ ++|+|+.
T Consensus 344 G~~lGatptaianm~av~~~ 363 (398)
T TIGR00210 344 GFGLGATPTAIANMQAVTER 363 (398)
T ss_pred cccccchHHHHHHHHHHHhc
Confidence 63 57778766 7999875
No 25
>COG2323 Predicted membrane protein [Function unknown]
Probab=43.06 E-value=74 Score=30.07 Aligned_cols=81 Identities=9% Similarity=0.208 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHHhHHHHHHHHHHHHHHHHH
Q 016844 14 VLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSILGWIV 93 (381)
Q Consensus 14 v~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~~g~l~ 93 (381)
++|-+++..+++++. |. .++|++|++..+=|.=.+++..++.....++=...|..-+.+++..++.++++|+.
T Consensus 8 ~ir~vi~~~~l~l~~--ri-----~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 8 AIRSVIGYLILLLLL--RI-----MGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred HHHHHHHHHHHHHHH--HH-----hCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777666 54 67899999999999999999999999888876666666666666667788888887
Q ss_pred HHHcCCCC
Q 016844 94 VQFTRPPS 101 (381)
Q Consensus 94 ~~~~~~p~ 101 (381)
.|--|+-+
T Consensus 81 ~ks~~~r~ 88 (224)
T COG2323 81 LKSRKLRK 88 (224)
T ss_pred hccHHHHH
Confidence 77655554
No 26
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=39.46 E-value=38 Score=36.34 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCChhHHhhhcch-hhhhhhhHHHHHhhhcccc-----------------------
Q 016844 10 SSIPVLKVLLITALGSYLALDHVNILGEDARKHINNL-VFYVFNPALVASNLANTIT----------------------- 65 (381)
Q Consensus 10 a~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l-~~~vflP~LiFs~la~~lt----------------------- 65 (381)
.-+|++-+.+++++||++. |..+ |.+|== +--++.=.|++..++.++.
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki------~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFvy~vG~~~Gp~F 79 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKF------GSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFIFAIGYEVGPQF 79 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEE------eeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhccCHHH
Confidence 4589999999999999998 5433 222211 1122222333333333321
Q ss_pred ccchhh-hhHHhHHHHHHHHHHHHHHHHHHHHcCCCCCccCeeeEEeecCCCCchHHHHHHhhhhcCCCCCC-----Chh
Q 016844 66 YESMLK-LWFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFG-----SPD 139 (381)
Q Consensus 66 ~~~l~~-~w~ipv~~ll~~~ig~~~g~l~~~~~~~p~~~r~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~-----~~~ 139 (381)
++++++ =|-.-+.+++..+++.++.|.+.|+++++...-.++. |++--|+-.|=-+ .+++.+- +..-. ..+
T Consensus 80 f~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~-aGalT~tp~l~aA-~~a~~~~-~~~~~~~~~~~~~ 156 (562)
T TIGR03802 80 FASLKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLA-AGGLTQSAVIGTA-GDAIEKL-GLSPEQKTAYQGN 156 (562)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-hchhhccHHHHHH-HHHHHhc-CCCcchhhccccc
Confidence 123333 2444555677778899999999999999984433332 3334444444333 4555332 11000 112
Q ss_pred hhhhhhhHHHHHHHHHhHHHHHHh-hhhhhhcc
Q 016844 140 TCQTYGLAYVSLSMAVGAIYLWSY-VYNIVRAS 171 (381)
Q Consensus 140 ~~~~rg~aY~~~~~~~g~i~~ws~-g~~ll~~~ 171 (381)
.....+++|.. -.+|.++...+ ..+++|.+
T Consensus 157 ~avgYav~Ypf--Gvig~i~~~~~~~p~l~~~~ 187 (562)
T TIGR03802 157 VAVAYAVTYIF--GTIGVIIVLVNILPWLMGID 187 (562)
T ss_pred cceeeehhhhh--HHHHHHHHHHHHHHHHhCCC
Confidence 34566667762 34666644343 45566554
No 27
>PRK03818 putative transporter; Validated
Probab=38.83 E-value=88 Score=33.48 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=63.7
Q ss_pred CChhHHhhhcchhhhhhhhHHHHHhhhccccccchhh-hhHHhHHHHHHHHHHHHHHHHHHHHcCCCCCccCeeeEEeec
Q 016844 35 LGEDARKHINNLVFYVFNPALVASNLANTITYESMLK-LWFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAA 113 (381)
Q Consensus 35 l~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~-~w~ipv~~ll~~~ig~~~g~l~~~~~~~p~~~r~~v~~~~~f 113 (381)
.++.+..-+.++-+.+|+=|. -.+-++++ ++.+++ =|-..+..++.++++.+++|++.++++.+. ...+....
T Consensus 54 ~~~~~~~~~~~~gl~lFv~~v-Gl~~Gp~f-~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~G~~a 127 (552)
T PRK03818 54 LDSDMLHFIQEFGLILFVYTI-GIQVGPGF-FSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPL----PVMLGIFS 127 (552)
T ss_pred cChHHHHHHHHHHHHHHHHHH-hhcccHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHhh
Confidence 344444445555555555443 11222222 123333 244455677888899999999999999998 44443344
Q ss_pred CCCCchHH-HH-HHhhhhcCCCC-CCChhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhcc
Q 016844 114 GNLGNMPL-II-IPAVCKEKGSP-FGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIVRAS 171 (381)
Q Consensus 114 gN~~~LPl-~l-i~sl~~~~~~p-f~~~~~~~~rg~aY~~~~~~~g~i~~ws~g~~ll~~~ 171 (381)
|-.+|=|- +- .+++ ++.+.. -..++-....+++|.. -.++.++.-.+..++++.+
T Consensus 128 Ga~T~tp~l~aa~~~~-~~~~~~~~~~~~~a~gYa~~Yp~--g~i~~il~~~~~~~~~~~~ 185 (552)
T PRK03818 128 GAVTNTPALGAGQQIL-RDLGTPGDLVDQMGMGYAMAYPF--GICGILLSMWLIRLIFRIN 185 (552)
T ss_pred ccccccHHHHHHHHHH-hccCCCccccCCcchhhHhHhHH--HHHHHHHHHHHHHHHhCCC
Confidence 44444342 22 2233 211100 0112234566666653 2345454333556666654
No 28
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=38.56 E-value=1.3e+02 Score=31.59 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHH-HHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHHhHHHHHHHHH
Q 016844 11 SIPVLKVLLITA-LGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLV 85 (381)
Q Consensus 11 ~~pv~kVlli~~-~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~i 85 (381)
+-|...|+.... +|. +- |.|+++.-.||-+++.-=.+.+|..+|.-+.++. .+|.--...+|+.+++...+
T Consensus 89 FpPLG~VLv~mLGigv-AE--~SGll~alm~~~~~~~pk~llt~~vvfigi~s~~-asDaayVVlpPlaAmiF~a~ 160 (516)
T COG2978 89 FPPLGTVLVVMLGIGV-AE--RSGLLSALMRKLLNKVPKRLLTFTVVFIGILSHI-ASDAAYVVLPPLAAMIFIAL 160 (516)
T ss_pred CCchHHHHHHHHhhhh-hh--hcccHHHHHHHHHhhcchHHHhhHHHHHHHHHHH-HhhcceeEecchHHHHHHHh
Confidence 446666665543 565 44 9999999999999999999999999999998775 34555556789988777643
No 29
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.40 E-value=33 Score=29.32 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC
Q 016844 79 VLITFLVGSILGWIVVQFTRPP 100 (381)
Q Consensus 79 ~ll~~~ig~~~g~l~~~~~~~p 100 (381)
+++.+++|+++|+++.|++.-.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5678899999999999987654
No 30
>PRK04972 putative transporter; Provisional
Probab=36.74 E-value=77 Score=33.95 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCC--------------------CChhHHhhhcchhhhhhhhHHHHHhhhccccccchh
Q 016844 11 SIPVLKVLLITALGSYLALDHVNI--------------------LGEDARKHINNLVFYVFNPALVASNLANTITYESML 70 (381)
Q Consensus 11 ~~pv~kVlli~~~G~~lA~~~~gi--------------------l~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~ 70 (381)
-.|++-+.+++++|+++. |..+ +..+.-..+.++-+.+|+=|. -.+-++++ ++.++
T Consensus 11 ~~~~~~lf~~i~lG~~lG--~i~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~~~v-G~~~Gp~F-~~~l~ 86 (558)
T PRK04972 11 GNYILLLFVVLALGLCLG--KLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCV-GVEAGPNF-FSIFF 86 (558)
T ss_pred cCChHHHHHHHHHHHhhh--ceEEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHH-hhhhhHHH-HHHHH
Confidence 368888899999999888 4322 011111111223333333332 11222222 12333
Q ss_pred hh-hHHhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016844 71 KL-WFMPFNVLITFLVGSILGWIVVQFTRPPSH 102 (381)
Q Consensus 71 ~~-w~ipv~~ll~~~ig~~~g~l~~~~~~~p~~ 102 (381)
+- |-.-+..++.++++.++++.+.|+++.+..
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (558)
T PRK04972 87 RDGKNYLMLALVMVGSALVIALGLGKLFGWDIG 119 (558)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 32 344555777888999999999999999983
No 31
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=36.55 E-value=5e+02 Score=26.87 Aligned_cols=111 Identities=22% Similarity=0.323 Sum_probs=76.1
Q ss_pred HHHHHH------HHHHHHHHHHhhcccCCCChhHHhhhcchh-----hhhhhhHHHHHhhhc---cccccchhhhhHHhH
Q 016844 12 IPVLKV------LLITALGSYLALDHVNILGEDARKHINNLV-----FYVFNPALVASNLAN---TITYESMLKLWFMPF 77 (381)
Q Consensus 12 ~pv~kV------lli~~~G~~lA~~~~gil~~~~~k~ls~l~-----~~vflP~LiFs~la~---~lt~~~l~~~w~ipv 77 (381)
-|++|= +++.....++. +.|+++++..+.+.+.. .++|.-||+-.++=. .+=.+...++ +|.
T Consensus 51 iPi~k~yiGGg~il~~f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~--~p~ 126 (414)
T PF03390_consen 51 IPILKDYIGGGAILCIFVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARF--IPP 126 (414)
T ss_pred ChhhhccCChHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHH--HHH
Confidence 466665 56666778888 99999999999888765 367888888776621 1222334444 565
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCC--ccCeeeEEeecCC-CCchHHHHHHhh
Q 016844 78 NVLITFLVGSILGWIVVQFTRPPSH--FRGLIVGCCAAGN-LGNMPLIIIPAV 127 (381)
Q Consensus 78 ~~ll~~~ig~~~g~l~~~~~~~p~~--~r~~v~~~~~fgN-~~~LPl~li~sl 127 (381)
.+...+.+.++|-++..++....+ ..+.+++.-+=|| -|.+|++.+.+=
T Consensus 127 -il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~ 178 (414)
T PF03390_consen 127 -ILGGVIGAFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAE 178 (414)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHH
Confidence 566677777788888888887654 4445555555555 799999987554
No 32
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.30 E-value=57 Score=25.10 Aligned_cols=25 Identities=24% Similarity=0.672 Sum_probs=19.6
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHH
Q 016844 71 KLWFMPFNVLITFLVGSILGWIVVQ 95 (381)
Q Consensus 71 ~~w~ipv~~ll~~~ig~~~g~l~~~ 95 (381)
++|...+++.++.++|.+.|+.++|
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565568888899999999988774
No 33
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.87 E-value=54 Score=24.20 Aligned_cols=26 Identities=35% Similarity=0.768 Sum_probs=20.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHcC
Q 016844 73 WFMPFNVLITFLVGSILGWIVVQFTR 98 (381)
Q Consensus 73 w~ipv~~ll~~~ig~~~g~l~~~~~~ 98 (381)
++..+..++++++|+++||++....+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778888999999998875543
No 34
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=34.91 E-value=8.6 Score=41.60 Aligned_cols=95 Identities=18% Similarity=0.333 Sum_probs=64.6
Q ss_pred ccchhhhhHHhHHHHHHHHHHHHHHHHHHHHcCCC--CCccCeeeEEeecCCCCchHHHHHHhhhhcCCCCCCChhhhhh
Q 016844 66 YESMLKLWFMPFNVLITFLVGSILGWIVVQFTRPP--SHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQT 143 (381)
Q Consensus 66 ~~~l~~~w~ipv~~ll~~~ig~~~g~l~~~~~~~p--~~~r~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~ 143 (381)
.+++-+||+.-+ .+++.++|...+...+-- -++. +++.||+++=...+|+.++||..++. .|- +...|
T Consensus 438 YKeVP~WWf~~i-----li~s~~l~~~~~~~~~~~~q~PwW-g~~va~~ia~vf~iPigii~AtTNq~---~GL-NiitE 507 (761)
T KOG2262|consen 438 YKEVPDWWFLAI-----LIVSLGLGLAACEGYKTQVQLPWW-GLLVACAIAFVFTIPIGIIQATTNQT---PGL-NIITE 507 (761)
T ss_pred hccCcHHHHHHH-----HHHHHHHHhhheeeecccccCchH-HHHHHHHHHHHHhccHHHhhhhccCC---ccH-HHHHH
Confidence 677888887544 334556666666665552 2334 45566778889999999999997642 111 23456
Q ss_pred hhhHHHHHHHHHhHHHHHHhhhhhhhc
Q 016844 144 YGLAYVSLSMAVGAIYLWSYVYNIVRA 170 (381)
Q Consensus 144 rg~aY~~~~~~~g~i~~ws~g~~ll~~ 170 (381)
.=+.|+.=...+.+++.-+|||.-|+.
T Consensus 508 ~i~Gy~~PgrPiAn~~FK~yGyism~Q 534 (761)
T KOG2262|consen 508 YIIGYIYPGRPIANLCFKTYGYISMTQ 534 (761)
T ss_pred HHHHhhcCCchHHHHHHHHhchhhHHH
Confidence 666777667789999999999976553
No 35
>PRK05326 potassium/proton antiporter; Reviewed
Probab=34.83 E-value=1.7e+02 Score=31.23 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=56.2
Q ss_pred HHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHHhHH-HHHHHHHH-HHHHHHHHHHcCC
Q 016844 22 ALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFN-VLITFLVG-SILGWIVVQFTRP 99 (381)
Q Consensus 22 ~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~ipv~-~ll~~~ig-~~~g~l~~~~~~~ 99 (381)
..|.+++ +......+..++..+..-.++.|. +|..+|-.++++++.+.|+.-+- .++..+++ .+..|+..+.+|.
T Consensus 252 iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~ 328 (562)
T PRK05326 252 LAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPFRF 328 (562)
T ss_pred HHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4565555 333334444444555555677765 79999999999988776432221 11222233 3334555677788
Q ss_pred CCCccCeeeEEeecCCCCchHHHHH
Q 016844 100 PSHFRGLIVGCCAAGNLGNMPLIII 124 (381)
Q Consensus 100 p~~~r~~v~~~~~fgN~~~LPl~li 124 (381)
|.+.+-++--+ |-=|..|+++-
T Consensus 329 ~~~e~~~i~~~---g~RG~v~i~lA 350 (562)
T PRK05326 329 NLREKLFISWV---GLRGAVPIVLA 350 (562)
T ss_pred CHhhhheeeee---cchhHHHHHHH
Confidence 77666544433 45777887664
No 36
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=31.96 E-value=1.7e+02 Score=29.14 Aligned_cols=108 Identities=20% Similarity=0.168 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhH-HhHHHHHHHHHHHHH
Q 016844 11 SIPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWF-MPFNVLITFLVGSIL 89 (381)
Q Consensus 11 ~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~-ipv~~ll~~~ig~~~ 89 (381)
.++.+.+++-..+|.++. =+|+|.||-+++-. .+..|.+-| .++..++++++.+=.. .-+-.++++.+....
T Consensus 168 ~~~lv~~llP~iiG~iLG-----NLD~~~r~fl~~~~-~~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 168 WMSLVAALLPIIIGMILG-----NLDPDFRKFLAPGV-PILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCHHHHHHHhcCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 678888999999999987 38999999998864 566787777 4899999999988663 223344455555566
Q ss_pred HHHHHHHcCCCCCccCeeeEEeecCCCCchHHHHHHh
Q 016844 90 GWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPA 126 (381)
Q Consensus 90 g~l~~~~~~~p~~~r~~v~~~~~fgN~~~LPl~li~s 126 (381)
.++.-|..+=.+..- ..-..+..||.-.-|-++-++
T Consensus 241 ~~~~dr~i~~~~g~a-G~A~sstAGnavatPaaiA~~ 276 (314)
T PF03812_consen 241 LYLADRLILKGNGVA-GAAISSTAGNAVATPAAIAAA 276 (314)
T ss_pred HHHHHHHHcCCCCce-eehHHhhhhhhhhhhHHHHHh
Confidence 677777642111122 333356789999999887543
No 37
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=29.24 E-value=1.7e+02 Score=29.78 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=54.5
Q ss_pred HHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhHH-hHHHHHHHHHHHHHHHHHHHHcCCC
Q 016844 22 ALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFM-PFNVLITFLVGSILGWIVVQFTRPP 100 (381)
Q Consensus 22 ~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~i-pv~~ll~~~ig~~~g~l~~~~~~~p 100 (381)
.+|..++ +...-.++..+++..+-..+|.| +-|.++|-+++++.+.+.|.. .+...+....=.+..|+..|.+|.+
T Consensus 251 laGl~ls--~~~~~~~~l~~~i~~~~~~~fip-lFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~ 327 (397)
T COG0475 251 LAGLLLS--ESEYRKHELEEKIEPFGDGLFIP-LFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGFS 327 (397)
T ss_pred HHHHHhc--ccccchHHHHHHHHhHHhHHHHH-HHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3455555 33222267888888888888887 679999999999999998876 3333333344455588889999966
Q ss_pred CC
Q 016844 101 SH 102 (381)
Q Consensus 101 ~~ 102 (381)
++
T Consensus 328 ~~ 329 (397)
T COG0475 328 KR 329 (397)
T ss_pred HH
Confidence 53
No 38
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=28.97 E-value=51 Score=32.50 Aligned_cols=85 Identities=13% Similarity=0.108 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhcc-cCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhhhH-HhHHHHHHHHHHHHHHHHHH
Q 016844 17 VLLITALGSYLALDH-VNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWF-MPFNVLITFLVGSILGWIVV 94 (381)
Q Consensus 17 Vlli~~~G~~lA~~~-~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w~-ipv~~ll~~~ig~~~g~l~~ 94 (381)
+.+-..+|..++ . .--.++..++.++. .-..++. +=..=+|.+++++++.+++. ..+..++.......+++.+.
T Consensus 29 ~~~AillG~~i~--n~~~~~~~~~~~Gi~~-~~k~~Lr-~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg 104 (305)
T PF03601_consen 29 LLIAILLGMLIG--NLFFGLPARFKPGIKF-SSKKLLR-LGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLG 104 (305)
T ss_pred HHHHHHHHHHHh--hhccCCcHHHHhHHHH-HHHHHHH-HHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 455666777666 3 11233443344331 1111221 11223788999999999987 33335566677888888888
Q ss_pred -HHcCCCCCccC
Q 016844 95 -QFTRPPSHFRG 105 (381)
Q Consensus 95 -~~~~~p~~~r~ 105 (381)
|.+|+|++..-
T Consensus 105 ~r~~~l~~~~~~ 116 (305)
T PF03601_consen 105 RRLFGLDRKLAI 116 (305)
T ss_pred HHHhCCCHHHHH
Confidence 99999987543
No 39
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=28.52 E-value=92 Score=31.45 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=35.4
Q ss_pred HHHHHhhhccccccc---hhhhhHHhHHHHHHH-HHHHHHHHHHHHHcCCCC
Q 016844 54 ALVASNLANTITYES---MLKLWFMPFNVLITF-LVGSILGWIVVQFTRPPS 101 (381)
Q Consensus 54 ~LiFs~la~~lt~~~---l~~~w~ipv~~ll~~-~ig~~~g~l~~~~~~~p~ 101 (381)
.++-..+|.++|.++ +++.|++-+..++.+ .+|..+||+..|.-+.|+
T Consensus 65 ~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~ 116 (352)
T COG3180 65 VILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPG 116 (352)
T ss_pred HHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 345567888887765 556676666555554 889999999999988876
No 40
>PRK01844 hypothetical protein; Provisional
Probab=28.19 E-value=93 Score=24.10 Aligned_cols=24 Identities=17% Similarity=0.605 Sum_probs=18.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHH
Q 016844 72 LWFMPFNVLITFLVGSILGWIVVQ 95 (381)
Q Consensus 72 ~w~ipv~~ll~~~ig~~~g~l~~~ 95 (381)
.|+..+..++..++|.+.|+.++|
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555567888999999988875
No 41
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=27.91 E-value=1.4e+02 Score=29.73 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhhcccCCCChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhh-hHHhHHHHHHHHHHHHHHHHH
Q 016844 15 LKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKL-WFMPFNVLITFLVGSILGWIV 93 (381)
Q Consensus 15 ~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~-w~ipv~~ll~~~ig~~~g~l~ 93 (381)
+++++...+|..+. . ++++-++..++- .++.+|+-.|. +|.+++++++.+- +..++-.+...++....++.+
T Consensus 174 i~allplliG~~lg--n---l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG--N---LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH--h---HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 56668999999887 2 666666555554 44599999888 9999999999777 455555555555566667777
Q ss_pred HHHcCCCCCccCeeeEEeecCCCCchHHH
Q 016844 94 VQFTRPPSHFRGLIVGCCAAGNLGNMPLI 122 (381)
Q Consensus 94 ~~~~~~p~~~r~~v~~~~~fgN~~~LPl~ 122 (381)
.|+++..+...+. -...+.||.--=|-+
T Consensus 247 ~Rl~~~~~g~~g~-a~~ttaG~aic~pAA 274 (326)
T PRK05274 247 DRLIGGGNGVAGA-AAGSTAGNAVATPAA 274 (326)
T ss_pred hheeecCCCcchH-HHHHHHHHHHHHHHH
Confidence 8888654432222 222345555444444
No 42
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=27.66 E-value=1.2e+02 Score=26.61 Aligned_cols=47 Identities=15% Similarity=0.444 Sum_probs=34.4
Q ss_pred HHHHhhhccccccchhh---hhH-HhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 016844 55 LVASNLANTITYESMLK---LWF-MPFNVLITFLVGSILGWIVVQFTRPPS 101 (381)
Q Consensus 55 LiFs~la~~lt~~~l~~---~w~-ipv~~ll~~~ig~~~g~l~~~~~~~p~ 101 (381)
++-..+|.++|.+++++ +|. .-+..+++.+++.+.+|++.|.++.+.
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~ 105 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDP 105 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 35578888888776555 443 334445556889999999999999887
No 43
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=27.37 E-value=4.5e+02 Score=27.05 Aligned_cols=102 Identities=18% Similarity=0.296 Sum_probs=68.0
Q ss_pred HHHHHHHhhcccCCCChhHHhhhcchh-----hhhhhhHHHHHhhh---ccccccchhhhhHHhHHHHHHHHHHHHHHHH
Q 016844 21 TALGSYLALDHVNILGEDARKHINNLV-----FYVFNPALVASNLA---NTITYESMLKLWFMPFNVLITFLVGSILGWI 92 (381)
Q Consensus 21 ~~~G~~lA~~~~gil~~~~~k~ls~l~-----~~vflP~LiFs~la---~~lt~~~l~~~w~ipv~~ll~~~ig~~~g~l 92 (381)
..+-.++. +.|+++++.-|..+... .++|.+||+.-++= +.+=.+.++.+ +|. .++..+.+.+.|-+
T Consensus 83 ~fvaa~~v--~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~--i~~-il~g~v~A~~~g~l 157 (438)
T COG3493 83 LFVAAYLV--FYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRY--IPP-ILAGMVGAAAVGIL 157 (438)
T ss_pred HHHHHHHH--HhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhh--hHH-HHHHHHHHHHHHHH
Confidence 33344556 78999999999988764 58999999987762 12334455555 333 34455556677777
Q ss_pred HHHHcCCCCC--ccCeeeEEeecCC-CCchHHHHHHhh
Q 016844 93 VVQFTRPPSH--FRGLIVGCCAAGN-LGNMPLIIIPAV 127 (381)
Q Consensus 93 ~~~~~~~p~~--~r~~v~~~~~fgN-~~~LPl~li~sl 127 (381)
+.-++..+.+ ..+.+++.-+=|| -|.+|++.+.|=
T Consensus 158 VG~~~G~~~~d~~m~~vlPIM~GG~GaGavPLS~iYs~ 195 (438)
T COG3493 158 VGLLFGLSFQDTMMYVVLPIMGGGMGAGAVPLSEIYSS 195 (438)
T ss_pred HHHHhCCChHHeeeeEEeeeccCCCCCCcccHHHHHHH
Confidence 7777777664 5566666555555 488999998553
No 44
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=27.00 E-value=65 Score=24.45 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=32.7
Q ss_pred hccccccchhhhh--HHhHHHHHHHHHHHHHHHHHH---HHcCCCCCc
Q 016844 61 ANTITYESMLKLW--FMPFNVLITFLVGSILGWIVV---QFTRPPSHF 103 (381)
Q Consensus 61 a~~lt~~~l~~~w--~ipv~~ll~~~ig~~~g~l~~---~~~~~p~~~ 103 (381)
..+.+.+.+|-|| ++|=-.++++.++.+.|-+-. |+.++|.+.
T Consensus 12 ~~q~~y~~lkPWwdvf~~YL~~~mlmi~v~~~~~ql~~~~~~clP~~~ 59 (65)
T PF12534_consen 12 ENQPCYRILKPWWDVFFDYLVLLMLMIFVFGGTFQLTQDKIVCLPCTS 59 (65)
T ss_pred hhHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhHHhccccceeCCCcc
Confidence 3566788999999 888888888888888775544 666777754
No 45
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=26.56 E-value=2.5e+02 Score=26.65 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=67.4
Q ss_pred hhcchhhhhhhhHHHHHhhhccccccchhhhh-HHhHHHHHHHHHHHHHHHHHHHHcCCCCCccCeeeEEeecCCCCchH
Q 016844 42 HINNLVFYVFNPALVASNLANTITYESMLKLW-FMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMP 120 (381)
Q Consensus 42 ~ls~l~~~vflP~LiFs~la~~lt~~~l~~~w-~ipv~~ll~~~ig~~~g~l~~~~~~~p~~~r~~v~~~~~fgN~~~LP 120 (381)
.=++..-++.-|+-+-=-+--+=..+.++++| .+-...++...+++..++++.|.+..+++.. .+..+-+=.-|
T Consensus 59 ~g~~~i~~lLgPAtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~-----~Sl~PkSvTTp 133 (230)
T COG1346 59 KGGQWINFLLGPATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELI-----LSLLPKSVTTP 133 (230)
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-----HHhcccccccH
Confidence 33445555556655544333344677888877 6666777778999999999999999999422 23344455556
Q ss_pred HHHHHhhhhcCCCCCCChhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhcc
Q 016844 121 LIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIVRAS 171 (381)
Q Consensus 121 l~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i~~ws~g~~ll~~~ 171 (381)
+++= +++ ..|..++. -.++..+.+++--..|+.+++.-
T Consensus 134 iAm~--vs~----~iGGip~l-------tav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 134 IAME--VSE----SIGGIPAL-------TAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred HHHH--HHH----hcCCchHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 6652 111 13332212 24455555666666777766543
No 46
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=25.30 E-value=74 Score=21.03 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=14.8
Q ss_pred hhhhhhhhHHHHHHHHHhHH
Q 016844 139 DTCQTYGLAYVSLSMAVGAI 158 (381)
Q Consensus 139 ~~~~~rg~aY~~~~~~~g~i 158 (381)
.+..++|++|+++..++-..
T Consensus 11 g~aiDqgiay~Lm~~Al~~t 30 (34)
T PF06376_consen 11 GKAIDQGIAYMLMLVALVVT 30 (34)
T ss_pred cchhhHHHHHHHHHHHHHHH
Confidence 35679999999977765443
No 47
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=24.79 E-value=1.3e+02 Score=29.81 Aligned_cols=47 Identities=13% Similarity=0.359 Sum_probs=33.1
Q ss_pred HHHHhhhccccccch---hhhhHHh-HHHHHHHHHHHHHHHHHHHHcCCCC
Q 016844 55 LVASNLANTITYESM---LKLWFMP-FNVLITFLVGSILGWIVVQFTRPPS 101 (381)
Q Consensus 55 LiFs~la~~lt~~~l---~~~w~ip-v~~ll~~~ig~~~g~l~~~~~~~p~ 101 (381)
++-..+|.++|.|.+ ++||+.- +..+++..++.+.+|+..|..|.++
T Consensus 33 ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~ 83 (318)
T PF05145_consen 33 ILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDR 83 (318)
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 456678888887755 4555432 2333444889999999999999886
No 48
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=22.95 E-value=1.4e+02 Score=22.00 Aligned_cols=21 Identities=19% Similarity=0.399 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016844 7 FIASSIPVLKVLLITALGSYL 27 (381)
Q Consensus 7 i~~a~~pv~kVlli~~~G~~l 27 (381)
+..-..|++.|.++.++||+.
T Consensus 24 l~~~l~PiL~v~~Vg~YGF~V 44 (56)
T PF06796_consen 24 LAVVLFPILAVAFVGGYGFIV 44 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999854
No 49
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=22.69 E-value=5.9e+02 Score=25.71 Aligned_cols=93 Identities=20% Similarity=0.391 Sum_probs=66.1
Q ss_pred ccCCCChhHHhhhcchh-----hhhhhhHHHHHhhhc---cccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016844 31 HVNILGEDARKHINNLV-----FYVFNPALVASNLAN---TITYESMLKLWFMPFNVLITFLVGSILGWIVVQFTRPPSH 102 (381)
Q Consensus 31 ~~gil~~~~~k~ls~l~-----~~vflP~LiFs~la~---~lt~~~l~~~w~ipv~~ll~~~ig~~~g~l~~~~~~~p~~ 102 (381)
+.|+++++..+..++.. .++|.-||+-.++=. .+=.+...++ +|. .++..+.+.+.|-++..++....+
T Consensus 5 ~~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~--~p~-il~g~~~a~~~g~lvG~l~G~~~~ 81 (347)
T TIGR00783 5 FYNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRF--IPP-ALIGMVLAVIVGILVGTLFGLGFD 81 (347)
T ss_pred EeCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHcCCCHh
Confidence 78999999999998843 478888998876621 2223344444 565 556777788888888888887664
Q ss_pred --ccCeeeEEeecCC-CCchHHHHHHh
Q 016844 103 --FRGLIVGCCAAGN-LGNMPLIIIPA 126 (381)
Q Consensus 103 --~r~~v~~~~~fgN-~~~LPl~li~s 126 (381)
..+.+++.-+=|| -|-+|++.+.+
T Consensus 82 ~~~~~i~lPIm~GG~GaGavPLS~~Y~ 108 (347)
T TIGR00783 82 HSLMYIVMPIMAGGVGAGIVPLSIIYS 108 (347)
T ss_pred HhhheeeehhcCCCcccchhhHHHHHH
Confidence 5666666666666 79999998765
No 50
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.46 E-value=1.1e+02 Score=26.44 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=19.5
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHcCC
Q 016844 71 KLWFMPFNVLITFLVGSILGWIVVQFTRP 99 (381)
Q Consensus 71 ~~w~ipv~~ll~~~ig~~~g~l~~~~~~~ 99 (381)
+.|..|. +..++|.++|+++.|+++-
T Consensus 6 ~~W~~a~---igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 6 MTWEYAL---IGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHcch
Confidence 3455444 6678999999999999864
No 51
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=21.91 E-value=1.6e+02 Score=20.90 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016844 6 LFIASSIPVLKVLLITALGSYL 27 (381)
Q Consensus 6 li~~a~~pv~kVlli~~~G~~l 27 (381)
.+.+-..|++.|.++.++||..
T Consensus 15 fl~v~l~PiLsV~~Vg~YGF~v 36 (47)
T TIGR02972 15 FIIVVLFPILSVAGIGGYGFII 36 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999864
No 52
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=20.93 E-value=1.8e+02 Score=20.16 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016844 6 LFIASSIPVLKVLLITALGSYL 27 (381)
Q Consensus 6 li~~a~~pv~kVlli~~~G~~l 27 (381)
.+.+-..|++.|.++.++||..
T Consensus 10 fl~~~l~PiLsV~~V~~YGF~v 31 (42)
T TIGR02973 10 FLAAVIWPVLSVITVGGYGFAV 31 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999864
No 53
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=20.76 E-value=78 Score=25.93 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=26.7
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHcCCCCCccCe
Q 016844 71 KLWFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGL 106 (381)
Q Consensus 71 ~~w~ipv~~ll~~~ig~~~g~l~~~~~~~p~~~r~~ 106 (381)
++|..-+-.++.+++-+++-+++.++++.|...++|
T Consensus 15 sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~ 50 (108)
T PF07219_consen 15 SLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRW 50 (108)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 456666666667777788889999999999865443
No 54
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=20.60 E-value=1.3e+02 Score=21.32 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=21.2
Q ss_pred ccchhhhhHHhHHHHHHHHHHHHHHHHHHHHc
Q 016844 66 YESMLKLWFMPFNVLITFLVGSILGWIVVQFT 97 (381)
Q Consensus 66 ~~~l~~~w~ipv~~ll~~~ig~~~g~l~~~~~ 97 (381)
.+++.+|.|=-+.+++..++|+.++-.+.++.
T Consensus 8 ~~~ii~~lP~iv~AilIl~vG~~va~~v~~~~ 39 (53)
T PF05552_consen 8 LDQIIAYLPNIVGAILILIVGWWVAKFVRKLV 39 (53)
T ss_dssp -----GGHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777767778888888888888877765
No 55
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=20.39 E-value=1.2e+02 Score=30.85 Aligned_cols=76 Identities=20% Similarity=0.387 Sum_probs=53.1
Q ss_pred hhcchhhhhhhhHHHHHhhhc--cccccchhhhhHHh----HHHHHHHHHHHHHHHHHHHHcCCCCCc-cCeeeEEeecC
Q 016844 42 HINNLVFYVFNPALVASNLAN--TITYESMLKLWFMP----FNVLITFLVGSILGWIVVQFTRPPSHF-RGLIVGCCAAG 114 (381)
Q Consensus 42 ~ls~l~~~vflP~LiFs~la~--~lt~~~l~~~w~ip----v~~ll~~~ig~~~g~l~~~~~~~p~~~-r~~v~~~~~fg 114 (381)
..+.+.-.+|.|.+.+..++. .++.|+....|--| +-++-.+.+.-.+|+.+.+.+.+|+++ .+..+.+|..|
T Consensus 106 ~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p 185 (371)
T KOG2718|consen 106 AFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSP 185 (371)
T ss_pred cceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccC
Confidence 344455556667777666554 45777777777333 333334567778899999999999999 79999888877
Q ss_pred CCC
Q 016844 115 NLG 117 (381)
Q Consensus 115 N~~ 117 (381)
=.+
T Consensus 186 ~g~ 188 (371)
T KOG2718|consen 186 GGG 188 (371)
T ss_pred Ccc
Confidence 543
No 56
>COG3329 Predicted permease [General function prediction only]
Probab=20.19 E-value=6.7e+02 Score=25.13 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.8
Q ss_pred ccccChhHHHHHHHHHHhcch
Q 016844 247 KSMFAPSTIGALAGFIIGLVP 267 (381)
Q Consensus 247 ~~~~~Pp~iaailgiivg~iP 267 (381)
+.|+||.+...+.|++||++.
T Consensus 213 Esflnpal~lllggl~iGlit 233 (372)
T COG3329 213 ESFLNPALVLLLGGLAIGLIT 233 (372)
T ss_pred HHHcCchHHHHHHHHHHhhee
Confidence 788999999999999999987
Done!