Query 016844
Match_columns 381
No_of_seqs 115 out of 245
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:43:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 94.7 0.042 1.4E-06 53.2 6.3 107 254-380 21-128 (332)
2 3zux_A Transporter, ASBTNM; tr 92.2 0.3 1E-05 47.1 7.6 77 77-161 232-308 (332)
3 4f4l_A ION transport protein; 13.5 2.2E+02 0.0076 22.2 4.5 20 144-163 69-88 (112)
4 2knc_A Integrin alpha-IIB; tra 8.9 4.4E+02 0.015 18.2 4.1 36 310-349 5-40 (54)
5 1q90_M Cytochrome B6F complex 8.7 4.4E+02 0.015 17.0 4.1 23 75-97 9-31 (39)
6 1vf5_F Protein PET M; photosyn 8.3 4.4E+02 0.015 16.6 3.8 24 75-98 8-31 (35)
7 1zcd_A Na(+)/H(+) antiporter 1 8.2 1.3E+02 0.0046 29.2 1.6 96 36-131 248-352 (388)
8 2nwl_A GLTPH, glutamate sympor 8.0 5.1E+02 0.018 25.2 5.8 54 49-102 55-112 (422)
9 3rvy_A ION transport protein; 7.9 7.2E+02 0.025 22.0 6.6 50 115-164 177-231 (285)
10 1q90_G Cytochrome B6F complex 7.6 1.6E+02 0.0055 18.8 1.2 11 258-268 6-16 (37)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=94.69 E-value=0.042 Score=53.21 Aligned_cols=107 Identities=9% Similarity=-0.082 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcchhhhhhhcCCCCChhhHHHHHHHhcCcchhhhhhhhccccccc-ccCCCCCcchhHhHHHHHHHHhh
Q 016844 254 TIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRG-LRGSGIQKSIVFGIVVARYVALP 332 (381)
Q Consensus 254 ~iaailgiivg~iPpLr~lf~~~~~pl~~l~ds~~~lG~a~IPl~llvLGa~L~~g-~~~s~~~~~~iv~i~~~R~iilP 332 (381)
++..+++.++|..-|=. ..++... -...+.++++..|.++... .++.--.+|.+....+.+++++|
T Consensus 21 ~l~i~~~~~lg~~~P~~---------~~~~~~~----i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~P 87 (332)
T 3zux_A 21 SLWAALFAAAAFFAPDT---------FKWAGPY----IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMP 87 (332)
T ss_dssp HHHHHHHHHHHHHCGGG---------TGGGGGG----HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcchh---------hhhhHHH----HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 66777777777653321 1122222 2246889999999999751 22122356777888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCChHHHHHHHhccCCchhhHHHHhhcccCC
Q 016844 333 LVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTNKQPILS 380 (381)
Q Consensus 333 ~igi~iv~~~~k~g~~~~~Dpl~~fvl~L~~~~PpA~~l~~i~ql~g~ 380 (381)
+++..+.+.+ + +||.+...+++..|.|++.+-..+|++.|-
T Consensus 88 ll~~~l~~~~------~-l~~~~~~Glil~~~~P~~~~s~v~t~~a~G 128 (332)
T 3zux_A 88 ATAWCLSKLL------N-LPAEIAVGVILVGCCPGGTASNVMTYLARG 128 (332)
T ss_dssp HHHHHHHHHT------T-CCHHHHHHHHHHHHSCCCTHHHHHHHHTTC
T ss_pred HHHHHHHHHh------C-CChHHHHHHHHHhcCCchhHHHHHHHHhCC
Confidence 9999988754 3 499999999999999999988888887753
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=92.22 E-value=0.3 Score=47.13 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCccCeeeEEeecCCCCchHHHHHHhhhhcCCCCCCChhhhhhhhhHHHHHHHHHh
Q 016844 77 FNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVG 156 (381)
Q Consensus 77 v~~ll~~~ig~~~g~l~~~~~~~p~~~r~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g 156 (381)
+..++.+.+++.+||.+.|.+|.+++.|.-+.-.|+..|+ .+-+.+..+. |+++....--...|-..-...+
T Consensus 232 ~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~-------F~~~p~~alp~~iy~~~q~i~~ 303 (332)
T 3zux_A 232 AVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH-------FAAAPVVAVPGALFSVWHNISG 303 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH-------STTCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH-------cCCCchHHHHHHHHHHHHHHHH
Confidence 3466777999999999999999999888777777888998 3444443333 5322222323334544444455
Q ss_pred HHHHH
Q 016844 157 AIYLW 161 (381)
Q Consensus 157 ~i~~w 161 (381)
.++.+
T Consensus 304 ~~la~ 308 (332)
T 3zux_A 304 SLLAT 308 (332)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 3
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=13.46 E-value=2.2e+02 Score=22.19 Aligned_cols=20 Identities=0% Similarity=0.019 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHhHHHHHHh
Q 016844 144 YGLAYVSLSMAVGAIYLWSY 163 (381)
Q Consensus 144 rg~aY~~~~~~~g~i~~ws~ 163 (381)
.+..|+..+..+++.+.-..
T Consensus 69 ~a~iyFi~fi~i~~fi~lNL 88 (112)
T 4f4l_A 69 NAWVFFIPFIMLTTFTVLNL 88 (112)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35568777777777665544
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=8.87 E-value=4.4e+02 Score=18.18 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=24.2
Q ss_pred ccCCCCCcchhHhHHHHHHHHhhHHHHHHHHHHHHcCCCC
Q 016844 310 LRGSGIQKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVC 349 (381)
Q Consensus 310 ~~~s~~~~~~iv~i~~~R~iilP~igi~iv~~~~k~g~~~ 349 (381)
.+...+|++.++..+++=++++.++.. .++|.|+.+
T Consensus 5 ~~~~~vp~wiIi~svl~GLllL~li~~----~LwK~GFFk 40 (54)
T 2knc_A 5 SEERAIPIWWVLVGVLGGLLLLTILVL----AMWKVGFFK 40 (54)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHTT
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHH----HHHHcCccc
Confidence 345678999999888888877765544 344555543
No 5
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=8.68 E-value=4.4e+02 Score=17.01 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=16.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHc
Q 016844 75 MPFNVLITFLVGSILGWIVVQFT 97 (381)
Q Consensus 75 ipv~~ll~~~ig~~~g~l~~~~~ 97 (381)
+...+...+.+|..+|+++-|+-
T Consensus 9 ~A~i~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 9 TALTMVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34445566788999999998874
No 6
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=8.28 E-value=4.4e+02 Score=16.63 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=17.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcC
Q 016844 75 MPFNVLITFLVGSILGWIVVQFTR 98 (381)
Q Consensus 75 ipv~~ll~~~ig~~~g~l~~~~~~ 98 (381)
+.......+.+|..+|+++-|+-+
T Consensus 8 ~A~i~~~LvLvGla~Gf~LLkiqg 31 (35)
T 1vf5_F 8 AALLSFGLIFVGWGLGVLLLKIQG 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhheeec
Confidence 344455667889999999888753
No 7
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=8.16 E-value=1.3e+02 Score=29.24 Aligned_cols=96 Identities=15% Similarity=0.262 Sum_probs=58.8
Q ss_pred ChhHHhhhcchhhhhhhhHHHHHhhhccccccchhhh-hHHhHHHHHHH----HHH-HHHHHHHHHHc--CCCCCc-cCe
Q 016844 36 GEDARKHINNLVFYVFNPALVASNLANTITYESMLKL-WFMPFNVLITF----LVG-SILGWIVVQFT--RPPSHF-RGL 106 (381)
Q Consensus 36 ~~~~~k~ls~l~~~vflP~LiFs~la~~lt~~~l~~~-w~ipv~~ll~~----~ig-~~~g~l~~~~~--~~p~~~-r~~ 106 (381)
.++-.+.+...+..+++|---|.+.|=+++.+..... -+.++.+.+.- .+| +..+|+..|+. ++|+.. ++-
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~ 327 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQ 327 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHH
Confidence 4667788899999999999999999999977422221 01111111111 333 22355665554 677753 334
Q ss_pred eeEEeecCCCCchHHHHHHhhhhcC
Q 016844 107 IVGCCAAGNLGNMPLIIIPAVCKEK 131 (381)
Q Consensus 107 v~~~~~fgN~~~LPl~li~sl~~~~ 131 (381)
..+.+.-.|++-..=.++.++.-++
T Consensus 328 ~~~vg~L~gigftmsL~Ia~laf~~ 352 (388)
T 1zcd_A 328 IMVVGILCGIGFTMSIFIASLAFGS 352 (388)
T ss_dssp GTTHHHHTTCCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhccchHHHHHHHHHhccC
Confidence 4666667788876666677776543
No 8
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=7.99 E-value=5.1e+02 Score=25.20 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=41.1
Q ss_pred hhhhhHHHHHhhhcccc-c--cchhhh-hHHhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016844 49 YVFNPALVASNLANTIT-Y--ESMLKL-WFMPFNVLITFLVGSILGWIVVQFTRPPSH 102 (381)
Q Consensus 49 ~vflP~LiFs~la~~lt-~--~~l~~~-w~ipv~~ll~~~ig~~~g~l~~~~~~~p~~ 102 (381)
....|=|+|..+...+. . +++.++ +-.-+++++++.++..+|.++..++++-..
T Consensus 55 kmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~g 112 (422)
T 2nwl_A 55 KMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG 112 (422)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45667788888888874 3 455454 456777888889999999999999987653
No 9
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=7.92 E-value=7.2e+02 Score=22.00 Aligned_cols=50 Identities=6% Similarity=-0.039 Sum_probs=28.9
Q ss_pred CCCchHHHHHHhhhhcCCCCCC-Ch-hhhhhh---hhHHHHHHHHHhHHHHHHhh
Q 016844 115 NLGNMPLIIIPAVCKEKGSPFG-SP-DTCQTY---GLAYVSLSMAVGAIYLWSYV 164 (381)
Q Consensus 115 N~~~LPl~li~sl~~~~~~pf~-~~-~~~~~r---g~aY~~~~~~~g~i~~ws~g 164 (381)
|-+|+|-++.-+..-..+.-|+ +- ..+.+. |..|+..+..++++.....-
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~ 231 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLV 231 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHH
Confidence 6788888887655443233365 42 112332 34677777777777666553
No 10
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=7.57 E-value=1.6e+02 Score=18.81 Aligned_cols=11 Identities=55% Similarity=1.253 Sum_probs=7.2
Q ss_pred HHHHHHhcchh
Q 016844 258 LAGFIIGLVPL 268 (381)
Q Consensus 258 ilgiivg~iPp 268 (381)
+.|++.|+||-
T Consensus 6 L~GIVlGlipv 16 (37)
T 1q90_G 6 LCGIVLGLVPV 16 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHhhHHH
Confidence 45677777763
Done!