Query 016844
Match_columns 381
No_of_seqs 115 out of 245
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 04:43:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016844.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016844hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 13.3 43 0.0032 19.2 1.6 28 247-274 5-32 (34)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 8.5 1.5E+02 0.011 16.1 2.7 21 145-165 3-23 (30)
3 d1q90g_ f.23.26.1 (G:) PetG su 7.5 81 0.0059 17.6 1.2 12 257-268 5-16 (30)
4 d1tm9a_ a.225.1.1 (A:) Hypothe 4.0 2.9E+02 0.021 19.9 2.9 21 332-352 94-114 (137)
5 d1q90m_ f.23.25.1 (M:) PetM su 3.6 4.1E+02 0.03 14.7 3.4 17 80-96 13-29 (34)
6 d1jb0m_ f.23.19.1 (M:) Subunit 3.6 2.4E+02 0.018 15.6 1.6 13 258-270 9-21 (31)
7 d1lghb_ f.3.1.1 (B:) Light-har 3.2 5.2E+02 0.038 15.4 4.1 38 62-99 4-41 (43)
8 d1tbaa_ a.15.1.1 (A:) TAF(II)2 2.9 1.7E+02 0.013 19.3 0.5 14 34-47 37-50 (67)
9 d2nwwa1 f.49.1.1 (A:12-416) Pr 2.8 1.3E+03 0.094 19.3 9.7 54 50-103 45-102 (405)
10 d1v54l_ f.23.6.1 (L:) Mitochon 2.7 6.2E+02 0.046 15.2 3.7 27 70-96 15-41 (46)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.33 E-value=43 Score=19.21 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=23.7
Q ss_pred ccccChhHHHHHHHHHHhcchhhhhhhc
Q 016844 247 KSMFAPSTIGALAGFIIGLVPLIRKSMI 274 (381)
Q Consensus 247 ~~~~~Pp~iaailgiivg~iPpLr~lf~ 274 (381)
+.|||=-+.|.+-|...|..-|+-+-|+
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfi 32 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcC
Confidence 5667777999999999999988888776
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.51 E-value=1.5e+02 Score=16.15 Aligned_cols=21 Identities=14% Similarity=0.486 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHhHHHHHHhhh
Q 016844 145 GLAYVSLSMAVGAIYLWSYVY 165 (381)
Q Consensus 145 g~aY~~~~~~~g~i~~ws~g~ 165 (381)
.++|+.+|.-+-+++.|..-+
T Consensus 3 ~i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 3 TITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHHHh
Confidence 468999988777777666533
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.46 E-value=81 Score=17.58 Aligned_cols=12 Identities=50% Similarity=1.115 Sum_probs=8.5
Q ss_pred HHHHHHHhcchh
Q 016844 257 ALAGFIIGLVPL 268 (381)
Q Consensus 257 ailgiivg~iPp 268 (381)
.+.|++.|+||-
T Consensus 5 ll~GivlGlipi 16 (30)
T d1q90g_ 5 LLCGIVLGLVPV 16 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHhhHHH
Confidence 356778888884
No 4
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=4.02 E-value=2.9e+02 Score=19.91 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCC
Q 016844 332 PLVGIVIVKGAVRFGFVCSDD 352 (381)
Q Consensus 332 P~igi~iv~~~~k~g~~~~~D 352 (381)
|+|..-+.+.++++|++..++
T Consensus 94 ~aiifci~yflyhf~fl~d~n 114 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKDNN 114 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCCCC
T ss_pred ceehhhHHHHHHHhccccccc
Confidence 344445667789999987434
No 5
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.57 E-value=4.1e+02 Score=14.73 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016844 80 LITFLVGSILGWIVVQF 96 (381)
Q Consensus 80 ll~~~ig~~~g~l~~~~ 96 (381)
+=.+++|..+|+++-|+
T Consensus 13 ig~tl~glaigfvllrv 29 (34)
T d1q90m_ 13 VGMTLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhheee
Confidence 34567888888887764
No 6
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=3.56 E-value=2.4e+02 Score=15.56 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=8.7
Q ss_pred HHHHHHhcchhhh
Q 016844 258 LAGFIIGLVPLIR 270 (381)
Q Consensus 258 ilgiivg~iPpLr 270 (381)
.++++|+++|-+-
T Consensus 9 ~valvial~pg~l 21 (31)
T d1jb0m_ 9 YVALVIALLPAVL 21 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4667777777553
No 7
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=3.21 E-value=5.2e+02 Score=15.40 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=27.5
Q ss_pred ccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHcCC
Q 016844 62 NTITYESMLKLWFMPFNVLITFLVGSILGWIVVQFTRP 99 (381)
Q Consensus 62 ~~lt~~~l~~~w~ipv~~ll~~~ig~~~g~l~~~~~~~ 99 (381)
+.+|-++.+|+-=+-+.....|..-.+++.+++.+-|+
T Consensus 4 sGLT~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 4 SGLTEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35677778887777777777777777778887777664
No 8
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=2.86 E-value=1.7e+02 Score=19.30 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=12.9
Q ss_pred CCChhHHhhhcchh
Q 016844 34 ILGEDARKHINNLV 47 (381)
Q Consensus 34 il~~~~~k~ls~l~ 47 (381)
+||++.+|+++.+.
T Consensus 37 ~lD~E~k~~L~~Ls 50 (67)
T d1tbaa_ 37 GFDAELRENIGSLS 50 (67)
T ss_dssp SCCTTTHHHHTTCT
T ss_pred ccCHHHHHHHHHHh
Confidence 79999999999886
No 9
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.82 E-value=1.3e+03 Score=19.25 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=38.6
Q ss_pred hhhhHHHHHhhhccc-cc--cchhhhh-HHhHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 016844 50 VFNPALVASNLANTI-TY--ESMLKLW-FMPFNVLITFLVGSILGWIVVQFTRPPSHF 103 (381)
Q Consensus 50 vflP~LiFs~la~~l-t~--~~l~~~w-~ipv~~ll~~~ig~~~g~l~~~~~~~p~~~ 103 (381)
...+=|+|.++...+ +. +++.+.. -.-.++++++.++..+|+++...+++....
T Consensus 45 m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~~pg~~~ 102 (405)
T d2nwwa1 45 MLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGI 102 (405)
T ss_dssp HHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCC
T ss_pred HHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 345567888887776 22 3444443 456678888899999999999999987743
No 10
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.68 E-value=6.2e+02 Score=15.19 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=19.8
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 016844 70 LKLWFMPFNVLITFLVGSILGWIVVQF 96 (381)
Q Consensus 70 ~~~w~ipv~~ll~~~ig~~~g~l~~~~ 96 (381)
.+=|-+-.-..++++.|+..-++++|-
T Consensus 15 ~Nk~rLla~m~~~fGsgfa~PF~ivRh 41 (46)
T d1v54l_ 15 ENKWRLLAMMTLFFGSGFAAPFFIVRH 41 (46)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccchHHHHHH
Confidence 344555666778888999988888763
Done!