BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016845
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 121/250 (48%), Gaps = 26/250 (10%)
Query: 124 YLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAA 183
Y+ + + L +++ KL L++ + + + +L QKC +L+ L+ + +GD+GL
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLY-ALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEV 336
Query: 184 VGKVCNQLEDLNLRFC---------EGL-TDTGLVDLAHGCGKSLKSLGIAACVKITDVS 233
+ + C QL+ L + EGL + GL+ LA GC + L+ + + IT+ S
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-QELEYMAVYVS-DITNES 394
Query: 234 LEAVGSHCKSL---ETLSLDSE-----FIHNKGVHAVAQGCPLLR--VLKLQCINVTDEA 283
LE++G++ K+L + LD E + GV ++ GC LR L+ +TD
Sbjct: 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454
Query: 284 LVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGC 343
L +G ++ + L + +D+GL +GC L+ L + C F S+ + A T
Sbjct: 455 LSYIGQYSPNVRWM-LLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF-SERAIAAAVTKL 512
Query: 344 KELTHLEING 353
L +L + G
Sbjct: 513 PSLRYLWVQG 522
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 100/414 (24%), Positives = 168/414 (40%), Gaps = 84/414 (20%)
Query: 13 DEVILEIFRHLDSKASRDACSLVCXXXXXXXXXXXXXXXIG--ASGSPDLFVKLLSRRFA 70
D+VI ++ ++ RD+ SLVC + + +PD LSRRF
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDR----LSRRFP 73
Query: 71 NVKSIHIDERLSVS----IPVQHGRRRGDQSKLSALQLHYLTK---KTGSEDGQFQSESY 123
N++S+ + + + IP G Y+T + + Q +S +
Sbjct: 74 NLRSLKLKGKPRAAMFNLIPENWG--------------GYVTPWVTEISNNLRQLKSVHF 119
Query: 124 ---YLSDSGLNALADGFSK-LEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGD- 178
+SD L+ LA + LE L L CS ++ GL+S+ C +K+L ++ +
Sbjct: 120 RRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK 179
Query: 179 --QGLAAVGKVCNQLEDLNLRFCE--GLTDTGLVDLAHGCGKSLKSLGIAACVKITDVS- 233
+ L + + LE LN E ++ L +A C +SL S VK+ D
Sbjct: 180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC-RSLVS------VKVGDFEI 232
Query: 234 LEAVG--SHCKSLETL---SLDSEF-IHNKGVHAV--------------AQGCPLL---- 269
LE VG +LE SL+ + + K ++ V P+L
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292
Query: 270 ---RVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLS 326
R L L + E + +C +LE+L + D+GL + + CK+LK L +
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIE 350
Query: 327 ----------DCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCR 370
+ +S GL A+A GC+EL ++ + +I LESIG + +
Sbjct: 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLK 403
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Query: 125 LSDSGLNALADGFSKLEKLSLIWCSN----------ISSLGLMSLAQKCIHLKSLDLQGC 174
+ D GL LA +L++L + ++ +S GL++LAQ C L+ + +
Sbjct: 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388
Query: 175 YVGDQGLAAVGKVCNQLEDLNL-------RFCEGLTDTGLVDLAHGCGKSLKSLGIAACV 227
+ ++ L ++G L D L R + D G+ L GC K +
Sbjct: 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448
Query: 228 KITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAV 287
+TD+ L +G + ++ + L ++G+ ++GCP L+ L+++ ++ A+ A
Sbjct: 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508
Query: 288 GNQCLSLELLALYSFQ 303
+ SL L + ++
Sbjct: 509 VTKLPSLRYLWVQGYR 524
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 31/246 (12%)
Query: 130 LNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCN 189
L A+ S+L L+L + + + S L+ L +C L+ L + Y+ D GL + C
Sbjct: 281 LPAVYSVCSRLTTLNLSY-ATVQSYDLVKLLCQCPKLQRLWVLD-YIEDAGLEVLASTCK 338
Query: 190 QLEDLNLRFCE--------GLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSH- 240
L +L + E LT+ GLV ++ GC K L+S+ + C ++T+ +L + +
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK-LESV-LYFCRQMTNAALITIARNR 396
Query: 241 ------------CKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVG 288
K+ + L+L+ I G A+ + C LR L L +TD+ +G
Sbjct: 397 PNMTRFRLCIIEPKAPDYLTLEPLDI---GFGAIVEHCKDLRRLSLS-GLLTDKVFEYIG 452
Query: 289 NQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 348
+E+L++ +F +D G+H V GC L+ L + DC F D L A A+ + +
Sbjct: 453 TYAKKMEMLSV-AFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRS 510
Query: 349 LEINGC 354
L ++ C
Sbjct: 511 LWMSSC 516
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 257 KGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKG 316
+ A++ L ++L+ + VTD+ L + + ++L L S + F+ GL A+
Sbjct: 95 PWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT 154
Query: 317 CKKLKNLTLSD 327
C+ LK L L +
Sbjct: 155 CRNLKELDLRE 165
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 306 TDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEIN 352
TD L + K K K L LS C S GL AIA C+ L L++
Sbjct: 118 TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 19/242 (7%)
Query: 124 YLSDSGLNALADGF---SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQG 180
+LS+S +N GF + L L L S + ++ C LK L++ + G
Sbjct: 80 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 181 LAAVGKVCNQLE--DLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVG 238
+ G N LE DL+ G G V L+ GCG+ LK L I+ DV +
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWV-LSDGCGE-LKHLAISGNKISGDVDV---- 193
Query: 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLA 298
S C +LE L + S + G+ + C L+ L + ++ + A+ + C L+LL
Sbjct: 194 SRCVNLEFLDVSSNNF-STGIPFLGD-CSALQHLDISGNKLSGDFSRAI-STCTELKLLN 250
Query: 299 LYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIG 358
+ S QF K L+ L+L++ F ++ + ++ C LT L+++G H G
Sbjct: 251 ISS-NQFVGP---IPPLPLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYG 305
Query: 359 TM 360
+
Sbjct: 306 AV 307
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 19/242 (7%)
Query: 124 YLSDSGLNALADGF---SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQG 180
+LS+S +N GF + L L L S + ++ C LK L++ + G
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 181 LAAVGKVCNQLE--DLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVG 238
+ G N LE DL+ G G V L+ GCG+ LK L I+ DV +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWV-LSDGCGE-LKHLAISGNKISGDVDV---- 196
Query: 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLA 298
S C +LE L + S + G+ + C L+ L + ++ + A+ + C L+LL
Sbjct: 197 SRCVNLEFLDVSSNNF-STGIPFLGD-CSALQHLDISGNKLSGDFSRAI-STCTELKLLN 253
Query: 299 LYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIG 358
+ S QF K L+ L+L++ F ++ + ++ C LT L+++G H G
Sbjct: 254 ISS-NQFVGP---IPPLPLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYG 308
Query: 359 TM 360
+
Sbjct: 309 AV 310
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 233 SLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 292
+L + S C L+ LSL+ + + V+ +A+ L+R+ C ++ AL + + C
Sbjct: 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168
Query: 293 SLELLALYSFQQFTDKGLH-AVGKGCKKLKNLTLSDCY-FLSDMGLEAIATGCKELTHLE 350
L+ L L FT+K + AV + + L LS L L + C L HL+
Sbjct: 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228
Query: 351 IN 352
++
Sbjct: 229 LS 230
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 36/188 (19%)
Query: 121 ESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQG 180
E LSD +N LA S L +L+L CS S L +L C
Sbjct: 126 EGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSC----------------- 167
Query: 181 LAAVGKVCNQLEDLNLRFCEGLTDTGL-VDLAHGCGKSLKSLGIAACVK-ITDVSLEAVG 238
++L++LNL +C T+ + V +AH +++ L ++ K + L +
Sbjct: 168 --------SRLDELNLSWCFDFTEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLV 218
Query: 239 SHCKSLETLSL-DSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELL 297
C +L L L DS + N Q L + +C ++ E L+ +G E+
Sbjct: 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG------EIP 272
Query: 298 ALYSFQQF 305
L + Q F
Sbjct: 273 TLKTLQVF 280
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 233 SLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 292
+L + S C L+ LSL+ + + V+ +A+ L+R+ C ++ AL + + C
Sbjct: 71 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 130
Query: 293 SLELLALYSFQQFTDKGLH-AVGKGCKKLKNLTLSDCY-FLSDMGLEAIATGCKELTHLE 350
L+ L L FT+K + AV + + L LS L L + C L HL+
Sbjct: 131 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 190
Query: 351 IN 352
++
Sbjct: 191 LS 192
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 165 HLKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGL-VDLAHGCGKSLKSLG 222
+L L+L GC + L + C++L++LNL +C T+ + V +AH +++ L
Sbjct: 105 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-VSETITQLN 163
Query: 223 IAACVK-ITDVSLEAVGSHCKSLETLSL-DSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280
++ K + L + C +L L L DS + N Q L + +C ++
Sbjct: 164 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 223
Query: 281 DEALVAVGNQCLSLELLALYSFQQF 305
E L+ +G E+ L + Q F
Sbjct: 224 PETLLELG------EIPTLKTLQVF 242
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 51/135 (37%), Gaps = 23/135 (17%)
Query: 107 LTKKTGSEDGQFQSESYYLSDSGLNALADGFSKLEKLSLI-------------------- 146
L +T S+ + ++ ++ L L D F +LE LS I
Sbjct: 11 LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLE 70
Query: 147 WCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTG 206
N S GL LA+KC +L L+L G + D K L+ L+L CE T
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV---TN 127
Query: 207 LVDLAHGCGKSLKSL 221
L D K L L
Sbjct: 128 LNDYRENVFKLLPQL 142
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 159 LAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEG-LTDT 205
++C K+ ++ VG GL A G++C + LR C G L DT
Sbjct: 137 FVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDT 184
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 159 LAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEG-LTDT 205
++C K+ ++ VG GL A G++C + LR C G L DT
Sbjct: 137 FVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDT 184
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 290 QCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHL 349
+C LELL L +F + K + + LK L LS + L D+ E + G L HL
Sbjct: 398 ECPQLELLDL-AFTRLKVKDAQSPFQNLHLLKVLNLS--HSLLDISSEQLFDGLPALQHL 454
Query: 350 EINGCH----NI-GTMGLESIGKF-CRYASFCRL 377
+ G H NI T L+++G+ SFC L
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,020,848
Number of Sequences: 62578
Number of extensions: 377221
Number of successful extensions: 743
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 31
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)