Query 016845
Match_columns 381
No_of_seqs 254 out of 2708
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 03:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 1.8E-33 3.9E-38 233.8 10.0 353 6-377 70-433 (483)
2 KOG2120 SCF ubiquitin ligase, 100.0 2E-30 4.3E-35 206.7 13.4 287 9-374 99-391 (419)
3 KOG4341 F-box protein containi 99.9 1.1E-25 2.5E-30 187.6 9.9 252 124-377 202-459 (483)
4 cd00116 LRR_RI Leucine-rich re 99.7 4.3E-15 9.3E-20 130.0 22.9 112 240-353 163-287 (319)
5 KOG2120 SCF ubiquitin ligase, 99.7 3.9E-17 8.4E-22 131.3 7.7 197 119-347 191-390 (419)
6 cd00116 LRR_RI Leucine-rich re 99.6 2.5E-13 5.4E-18 118.8 22.8 250 123-380 8-288 (319)
7 KOG1947 Leucine rich repeat pr 99.6 3.9E-15 8.5E-20 137.9 11.1 242 125-368 175-451 (482)
8 KOG1947 Leucine rich repeat pr 99.6 1.9E-14 4.1E-19 133.4 12.0 227 125-353 201-461 (482)
9 PLN00113 leucine-rich repeat r 99.4 2.5E-12 5.5E-17 129.0 11.8 228 137-380 139-366 (968)
10 KOG1909 Ran GTPase-activating 99.3 1.1E-10 2.4E-15 96.6 16.4 235 134-372 54-327 (382)
11 KOG1909 Ran GTPase-activating 99.3 1E-10 2.2E-15 96.9 15.9 244 130-380 22-308 (382)
12 PLN00113 leucine-rich repeat r 99.3 9E-12 1.9E-16 125.1 11.0 230 133-380 113-342 (968)
13 PF12937 F-box-like: F-box-lik 99.3 1.2E-12 2.7E-17 78.1 1.9 43 10-53 3-45 (47)
14 KOG3207 Beta-tubulin folding c 99.2 2.7E-12 5.8E-17 109.0 1.5 210 136-353 119-335 (505)
15 KOG3665 ZYG-1-like serine/thre 99.1 7E-10 1.5E-14 104.4 11.2 154 216-374 122-279 (699)
16 KOG3207 Beta-tubulin folding c 99.1 4.7E-11 1E-15 101.6 2.7 215 156-377 113-333 (505)
17 KOG4194 Membrane glycoprotein 99.0 2.1E-11 4.5E-16 107.5 -1.6 133 240-380 291-426 (873)
18 PLN03210 Resistant to P. syrin 99.0 1.3E-09 2.8E-14 110.3 10.1 101 119-227 612-715 (1153)
19 KOG4194 Membrane glycoprotein 99.0 7.6E-11 1.6E-15 104.1 -1.2 133 136-278 100-232 (873)
20 COG5238 RNA1 Ran GTPase-activa 98.9 1.1E-07 2.3E-12 76.6 14.0 215 162-380 28-282 (388)
21 KOG3665 ZYG-1-like serine/thre 98.8 1.3E-08 2.9E-13 95.9 9.5 155 138-299 122-282 (699)
22 smart00256 FBOX A Receptor for 98.8 3.9E-09 8.5E-14 61.1 3.3 39 11-50 1-39 (41)
23 PLN03210 Resistant to P. syrin 98.8 1.7E-08 3.7E-13 102.3 8.4 200 138-357 611-838 (1153)
24 PF00646 F-box: F-box domain; 98.7 3.2E-09 6.9E-14 63.8 1.2 40 10-50 5-44 (48)
25 KOG2982 Uncharacterized conser 98.7 7.1E-09 1.5E-13 84.3 3.1 205 140-354 47-259 (418)
26 PF14580 LRR_9: Leucine-rich r 98.5 4.6E-08 1E-12 75.8 2.8 61 240-300 86-148 (175)
27 KOG0444 Cytoskeletal regulator 98.5 2.8E-09 6.1E-14 95.3 -5.7 79 119-200 56-137 (1255)
28 KOG3864 Uncharacterized conser 98.4 2.5E-07 5.4E-12 71.3 4.6 106 269-376 103-210 (221)
29 PF14580 LRR_9: Leucine-rich r 98.4 8.6E-08 1.9E-12 74.3 0.4 129 216-354 19-150 (175)
30 KOG2982 Uncharacterized conser 98.4 1E-06 2.2E-11 72.1 6.3 192 130-329 63-260 (418)
31 KOG0618 Serine/threonine phosp 98.4 3.2E-08 6.9E-13 92.4 -2.5 129 216-355 359-487 (1081)
32 KOG3864 Uncharacterized conser 98.3 4.3E-07 9.3E-12 70.0 3.2 82 294-378 103-184 (221)
33 KOG0444 Cytoskeletal regulator 98.3 1.9E-08 4.1E-13 90.2 -4.8 152 136-301 53-206 (1255)
34 PRK15387 E3 ubiquitin-protein 98.2 6.4E-07 1.4E-11 85.3 2.9 23 342-365 443-465 (788)
35 COG5238 RNA1 Ran GTPase-activa 98.2 1.6E-05 3.4E-10 64.5 10.3 165 161-328 89-282 (388)
36 KOG1259 Nischarin, modulator o 98.1 1E-06 2.2E-11 72.3 1.3 211 129-355 173-410 (490)
37 KOG0618 Serine/threonine phosp 98.1 4.6E-07 1E-11 84.9 -0.8 127 243-380 360-486 (1081)
38 PRK15387 E3 ubiquitin-protein 97.9 7.2E-06 1.6E-10 78.3 3.2 32 164-200 282-313 (788)
39 PRK15370 E3 ubiquitin-protein 97.7 3.2E-05 6.9E-10 74.3 3.5 11 318-328 367-377 (754)
40 smart00367 LRR_CC Leucine-rich 97.6 9.4E-05 2E-09 37.4 3.0 25 343-367 1-25 (26)
41 KOG4658 Apoptotic ATPase [Sign 97.6 3.6E-05 7.9E-10 75.2 2.5 108 136-252 543-652 (889)
42 KOG1259 Nischarin, modulator o 97.5 3.1E-05 6.7E-10 63.8 0.8 205 154-377 172-406 (490)
43 PRK15370 E3 ubiquitin-protein 97.5 7.6E-05 1.6E-09 71.8 3.5 109 242-365 325-435 (754)
44 KOG4658 Apoptotic ATPase [Sign 97.5 3.6E-05 7.8E-10 75.2 0.9 209 134-358 567-784 (889)
45 KOG1859 Leucine-rich repeat pr 97.2 2.5E-05 5.5E-10 71.9 -2.9 203 130-354 76-289 (1096)
46 KOG0281 Beta-TrCP (transducin 97.2 0.00017 3.6E-09 60.3 1.3 50 3-54 71-124 (499)
47 smart00367 LRR_CC Leucine-rich 97.2 0.00062 1.3E-08 34.3 3.0 24 317-340 1-24 (26)
48 KOG2997 F-box protein FBX9 [Ge 97.1 0.00037 8.1E-09 57.7 2.6 42 9-51 108-154 (366)
49 KOG4308 LRR-containing protein 97.0 0.00038 8.2E-09 63.4 2.6 95 243-339 205-310 (478)
50 KOG4237 Extracellular matrix p 96.8 0.00026 5.5E-09 60.8 -0.5 64 290-358 272-335 (498)
51 KOG4308 LRR-containing protein 96.8 0.00052 1.1E-08 62.6 1.4 123 241-366 171-311 (478)
52 KOG2123 Uncharacterized conser 96.7 0.00056 1.2E-08 56.0 0.9 115 216-341 19-137 (388)
53 PLN03215 ascorbic acid mannose 96.7 0.0014 3E-08 57.0 3.2 36 10-45 6-41 (373)
54 KOG2739 Leucine-rich acidic nu 96.6 0.00021 4.6E-09 57.8 -2.1 60 216-275 65-124 (260)
55 PF13855 LRR_8: Leucine rich r 96.6 0.00017 3.7E-09 45.5 -2.2 14 240-253 23-36 (61)
56 KOG1859 Leucine-rich repeat pr 96.6 0.00061 1.3E-08 63.3 0.4 176 156-353 76-263 (1096)
57 PRK15386 type III secretion pr 96.5 0.0074 1.6E-07 53.4 6.4 12 137-148 51-62 (426)
58 PF13855 LRR_8: Leucine rich r 96.2 0.00057 1.2E-08 43.1 -1.4 59 242-302 1-59 (61)
59 KOG1644 U2-associated snRNP A' 96.1 0.0017 3.7E-08 50.7 0.4 82 163-254 41-125 (233)
60 PF12799 LRR_4: Leucine Rich r 96.1 0.0081 1.7E-07 34.7 3.1 35 243-279 2-36 (44)
61 KOG2123 Uncharacterized conser 96.0 0.0033 7.1E-08 51.7 1.6 113 138-261 19-134 (388)
62 KOG4237 Extracellular matrix p 95.8 0.0013 2.8E-08 56.6 -1.6 236 129-378 57-330 (498)
63 PF12799 LRR_4: Leucine Rich r 95.6 0.018 3.9E-07 33.3 3.2 34 165-200 2-35 (44)
64 PLN03150 hypothetical protein; 95.6 0.034 7.3E-07 53.3 6.7 84 216-302 442-525 (623)
65 KOG2739 Leucine-rich acidic nu 95.5 0.0074 1.6E-07 49.2 1.8 20 157-176 84-103 (260)
66 KOG0617 Ras suppressor protein 95.5 0.00011 2.5E-09 55.4 -7.9 34 162-197 54-87 (264)
67 PLN03150 hypothetical protein; 95.4 0.039 8.4E-07 52.9 6.4 61 240-302 440-500 (623)
68 PRK15386 type III secretion pr 94.9 0.04 8.6E-07 48.9 4.6 167 160-362 48-218 (426)
69 PF13013 F-box-like_2: F-box-l 94.8 0.03 6.5E-07 39.5 2.9 29 7-37 22-50 (109)
70 PF13516 LRR_6: Leucine Rich r 94.8 0.028 6E-07 27.5 2.0 21 344-365 2-22 (24)
71 KOG0472 Leucine-rich repeat pr 94.5 0.032 7E-07 48.6 3.0 12 290-301 526-537 (565)
72 PF13516 LRR_6: Leucine Rich r 94.4 0.037 7.9E-07 27.1 1.9 21 164-184 2-22 (24)
73 KOG1644 U2-associated snRNP A' 93.7 0.038 8.3E-07 43.4 1.7 107 188-301 41-149 (233)
74 KOG0274 Cdc4 and related F-box 93.1 0.038 8.3E-07 51.4 1.1 46 3-50 104-149 (537)
75 KOG0472 Leucine-rich repeat pr 92.6 0.018 3.8E-07 50.1 -1.7 23 61-83 426-448 (565)
76 COG4886 Leucine-rich repeat (L 92.1 0.14 3E-06 46.3 3.4 79 138-225 116-195 (394)
77 KOG0617 Ras suppressor protein 91.3 0.0015 3.2E-08 49.6 -8.4 131 137-279 55-185 (264)
78 smart00368 LRR_RI Leucine rich 90.8 0.37 7.9E-06 24.6 2.7 23 164-186 2-24 (28)
79 COG4886 Leucine-rich repeat (L 90.7 0.23 5E-06 44.9 3.2 147 139-302 141-287 (394)
80 smart00368 LRR_RI Leucine rich 90.0 0.49 1.1E-05 24.1 2.7 22 242-263 2-23 (28)
81 KOG3763 mRNA export factor TAP 88.8 0.84 1.8E-05 41.8 5.1 36 266-301 217-253 (585)
82 PF07723 LRR_2: Leucine Rich R 86.7 0.6 1.3E-05 23.3 1.7 25 346-370 2-26 (26)
83 PF13504 LRR_7: Leucine rich r 86.1 0.59 1.3E-05 20.6 1.4 11 165-175 2-12 (17)
84 KOG4579 Leucine-rich repeat (L 85.4 0.24 5.2E-06 36.6 -0.2 15 240-254 98-112 (177)
85 KOG0531 Protein phosphatase 1, 85.0 0.28 6.1E-06 44.6 0.1 103 216-329 95-197 (414)
86 KOG0531 Protein phosphatase 1, 84.4 0.25 5.5E-06 44.9 -0.5 105 137-254 94-198 (414)
87 KOG3763 mRNA export factor TAP 82.8 2.3 5E-05 39.1 4.8 38 162-199 216-254 (585)
88 KOG4579 Leucine-rich repeat (L 79.2 0.93 2E-05 33.6 0.9 82 268-355 28-111 (177)
89 KOG3926 F-box proteins [Amino 74.0 1.9 4.2E-05 35.5 1.5 41 10-50 204-244 (332)
90 PF00560 LRR_1: Leucine Rich R 70.1 2.6 5.7E-05 19.8 0.9 13 165-177 1-13 (22)
91 PF09372 PRANC: PRANC domain; 70.0 4.1 8.9E-05 28.3 2.3 26 6-32 70-95 (97)
92 smart00370 LRR Leucine-rich re 57.0 9.3 0.0002 18.6 1.6 14 164-177 2-15 (26)
93 smart00369 LRR_TYP Leucine-ric 57.0 9.3 0.0002 18.6 1.6 14 164-177 2-15 (26)
94 PF03382 DUF285: Mycoplasma pr 56.0 7 0.00015 28.4 1.4 62 310-373 53-114 (120)
95 KOG0532 Leucine-rich repeat (L 51.4 2.8 6E-05 38.9 -1.6 123 162-301 119-243 (722)
96 KOG0532 Leucine-rich repeat (L 45.2 1.1 2.3E-05 41.5 -5.1 105 165-281 144-248 (722)
97 smart00365 LRR_SD22 Leucine-ri 40.2 25 0.00054 17.5 1.5 13 164-176 2-14 (26)
98 PF03382 DUF285: Mycoplasma pr 38.4 20 0.00043 26.0 1.5 78 290-372 9-88 (120)
99 KOG2502 Tub family proteins [G 36.4 24 0.00051 30.7 1.7 39 7-45 44-89 (355)
100 KOG4408 Putative Mg2+ and Co2+ 34.1 10 0.00023 32.6 -0.6 43 9-52 9-51 (386)
101 PF07735 FBA_2: F-box associat 31.2 1.4E+02 0.003 18.8 5.9 6 370-375 62-67 (70)
102 KOG3735 Tropomodulin and leiom 30.4 2.1E+02 0.0046 25.1 6.4 32 129-160 189-220 (353)
103 KOG3735 Tropomodulin and leiom 29.5 1.6E+02 0.0035 25.8 5.5 120 259-379 190-322 (353)
104 PF08387 FBD: FBD; InterPro: 24.7 60 0.0013 19.2 1.7 35 344-378 14-50 (51)
105 smart00446 LRRcap occurring C- 23.9 72 0.0016 15.9 1.6 13 160-172 9-21 (26)
106 PF08004 DUF1699: Protein of u 23.2 1.2E+02 0.0026 22.1 3.1 35 317-353 16-50 (131)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=233.82 Aligned_cols=353 Identities=27% Similarity=0.423 Sum_probs=235.9
Q ss_pred ccccCCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhcccceeeeccCCC----chHHHHHHHHhC-CCceEeeecCc
Q 016845 6 RINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGASGS----PDLFVKLLSRRF-ANVKSIHIDER 80 (381)
Q Consensus 6 ~i~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~l~~~~~ 80 (381)
.++..||+|++..||++|+ .+.+++++++|+.|+..+.+-.-|-+++.... +..++....+++ .+++.+.+.+.
T Consensus 70 ~~~~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~ 148 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGC 148 (483)
T ss_pred cccccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhcccccccccccc
Confidence 3455899999999999999 69999999999999999998888888875432 223344444443 35566665554
Q ss_pred eeeecccccCCccCccccccccccceeccccCCCcccccccceeeChHHHHHHHhcCCCccEEecCCCCCCChHHHHHHH
Q 016845 81 LSVSIPVQHGRRRGDQSKLSALQLHYLTKKTGSEDGQFQSESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLA 160 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 160 (381)
.......- +.. ....-.+.. +.......+++..+..++++|++|++|++..|..+++..+..+.
T Consensus 149 r~v~~ssl----rt~--~~~CpnIeh----------L~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 149 RAVGDSSL----RTF--ASNCPNIEH----------LALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred ccCCcchh----hHH--hhhCCchhh----------hhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 33210000 000 000000000 00111224555555555556666666666555555555555555
Q ss_pred HhCCCCCEEEeeccc-cChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHh
Q 016845 161 QKCIHLKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGS 239 (381)
Q Consensus 161 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 239 (381)
.+|++|++++++.|. +.+.+++.+...+.+++.+.+.+|.....+.+......+ +-+..+++..|..+++.++..+..
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~-~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC-LEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC-hHhhccchhhhccccchHHHHHhh
Confidence 556666666665554 444455555555555555555555545544444444433 445556666676777777777777
Q ss_pred cCCCCCEEEccc-CCCChhHHHHHHhcCCCCcEEEee-cccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcC
Q 016845 240 HCKSLETLSLDS-EFIHNKGVHAVAQGCPLLRVLKLQ-CINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGC 317 (381)
Q Consensus 240 ~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 317 (381)
.+..|+.|+.++ ..+++..+..+.+.+++|+.|.+. |..+++..+..+..+++.|+.+++.++..+++..+..++.+|
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 778888888877 457777778888888888888885 777888888888888888888888888877877788888889
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHh---cCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEc
Q 016845 318 KKLKNLTLSDCYFLSDMGLEAIAT---GCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRL 377 (381)
Q Consensus 318 ~~L~~L~l~~~~~i~~~~l~~l~~---~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l 377 (381)
+.|+.+.++.|..++|+++..+.. +...|+.+++.+|+.++++.++.+. .|++|+.+++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l 433 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIEL 433 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeee
Confidence 999999999998888887776644 4578889999999988887777665 6899998654
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-30 Score=206.71 Aligned_cols=287 Identities=24% Similarity=0.336 Sum_probs=175.9
Q ss_pred cCCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhcccceeeeccCCC--chHHHHHHHHhCCCceEeeecCceeeecc
Q 016845 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGASGS--PDLFVKLLSRRFANVKSIHIDERLSVSIP 86 (381)
Q Consensus 9 ~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (381)
+.|||||+..||+.|+ .+++++++.||||||+++.....|.+.+..+. .......+.++.--+-++. .
T Consensus 99 ~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla--r------- 168 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA--R------- 168 (419)
T ss_pred ccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc--h-------
Confidence 5799999999999999 79999999999999999999999999988765 2233333333221111110 0
Q ss_pred cccCCccCccccccccccceeccccCCCcccccccceeeChHHHHHHHh-cCCCccEEecCCCCCCChHHHHHHHHhCCC
Q 016845 87 VQHGRRRGDQSKLSALQLHYLTKKTGSEDGQFQSESYYLSDSGLNALAD-GFSKLEKLSLIWCSNISSLGLMSLAQKCIH 165 (381)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 165 (381)
..+.++.+...+. .-++|+.|++++. .++...+..++..|.+
T Consensus 169 ------------------------------------~~~~~prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 169 ------------------------------------SFMDQPRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSK 211 (419)
T ss_pred ------------------------------------hhhcCchhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHh
Confidence 0011111111111 1246777777764 5677777777777777
Q ss_pred CCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHh-cCCCC
Q 016845 166 LKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGS-HCKSL 244 (381)
Q Consensus 166 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~L 244 (381)
|+.|+|.+..+++.....+++ -.+|+.|+++.|.|++..+...+...| .+|.+|+++.|...++. +..+.. --++|
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~sc-s~L~~LNlsWc~l~~~~-Vtv~V~hise~l 288 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSC-SRLDELNLSWCFLFTEK-VTVAVAHISETL 288 (419)
T ss_pred hhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhh-hhHhhcCchHhhccchh-hhHHHhhhchhh
Confidence 777777777777766555554 456777777777777777776666666 67777777776544443 332222 23556
Q ss_pred CEEEcccC--CCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCE
Q 016845 245 ETLSLDSE--FIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKN 322 (381)
Q Consensus 245 ~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 322 (381)
..|+++|+ ++... .+..+.+.||+|.+|+++++..++++.+..+.+ ++.|++
T Consensus 289 ~~LNlsG~rrnl~~s-------------------------h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~ 342 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKS-------------------------HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQH 342 (419)
T ss_pred hhhhhhhhHhhhhhh-------------------------HHHHHHHhCCceeeeccccccccCchHHHHHHh-cchhee
Confidence 66666553 12222 344444556666666666665555544444443 566666
Q ss_pred EeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccce
Q 016845 323 LTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASF 374 (381)
Q Consensus 323 L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~ 374 (381)
|.++-|+.+..+.+..+- ..|.|.+|++.|| +++...+.+.+.||+|+.
T Consensus 343 lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELN-SKPSLVYLDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred eehhhhcCCChHHeeeec-cCcceEEEEeccc--cCchHHHHHHHhCccccc
Confidence 666666666555555443 3566666666665 445555666666666554
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=187.62 Aligned_cols=252 Identities=30% Similarity=0.595 Sum_probs=226.1
Q ss_pred eeChHHHHHHHhcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccc-cChhHHHHHHhhCCCCCeEeccCCCCC
Q 016845 124 YLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCEGL 202 (381)
Q Consensus 124 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~ 202 (381)
.+++..+..+++.|++|+.|++++|+.++..++..+..++..++.+.+.+|. .+.+.+..+...++.+.++++..|..+
T Consensus 202 ~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 202 SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc
Confidence 4688889999999999999999999989888999999999999999888885 666777888888888999999999999
Q ss_pred ChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccC-CCChhHHHHHHhcCCCCcEEEee-cccCC
Q 016845 203 TDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSE-FIHNKGVHAVAQGCPLLRVLKLQ-CINVT 280 (381)
Q Consensus 203 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~~~~ 280 (381)
++.++..+...+ ..|+.|..++|..+++..+..+.+++++|+.|.+.++ .+++.++..+..+++.|+.+++. +..+.
T Consensus 282 TD~~~~~i~~~c-~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 282 TDEDLWLIACGC-HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred cchHHHHHhhhh-hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence 999988888777 7999999999999999999999999999999999996 48899999999999999999996 66667
Q ss_pred HHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHh---cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCC
Q 016845 281 DEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGK---GCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNI 357 (381)
Q Consensus 281 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~ 357 (381)
+..+..++.+||.|+.|.++.|..++|+++..+.. +...|+.+.+++|+.+++..++.+.. |++|+++++.+|..+
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~-c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI-CRNLERIELIDCQDV 439 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh-Ccccceeeeechhhh
Confidence 77788999999999999999999999998877654 46779999999999999988888855 999999999999999
Q ss_pred ChHHHHHHHhcCCccceeEc
Q 016845 358 GTMGLESIGKFCRYASFCRL 377 (381)
Q Consensus 358 ~~~~~~~l~~~~~~L~~l~l 377 (381)
+.+++..+..++|++++..+
T Consensus 440 tk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 440 TKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhhHHHHhhCccceehhh
Confidence 99999999999999998643
No 4
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=4.3e-15 Score=129.96 Aligned_cols=112 Identities=30% Similarity=0.348 Sum_probs=50.2
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHh---cCCCCcEEEeecccCCHHHHHHH---HhcCCCCCeEeccCCCCCCHHHHHHH
Q 016845 240 HCKSLETLSLDSEFIHNKGVHAVAQ---GCPLLRVLKLQCINVTDEALVAV---GNQCLSLELLALYSFQQFTDKGLHAV 313 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l 313 (381)
.+++|++|++.++.+.+.++..+.. ..++|+.|+++.+.+.+.....+ ...+++|++|+++++ .+++.++..+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l 241 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAAL 241 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHH
Confidence 3445555555555555443333222 22355555555444444332222 223455555555553 2444444444
Q ss_pred HhcC----CCCCEEeccCCCCCCHHHHHHHH---hcCCCCCEEeccC
Q 016845 314 GKGC----KKLKNLTLSDCYFLSDMGLEAIA---TGCKELTHLEING 353 (381)
Q Consensus 314 ~~~~----~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l~~ 353 (381)
...+ +.|++|++++|. +++.+...+. ..+++|+.+++++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 242 ASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred HHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCC
Confidence 3322 455555555542 4433333222 2234555555555
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.9e-17 Score=131.28 Aligned_cols=197 Identities=21% Similarity=0.291 Sum_probs=135.8
Q ss_pred cccceeeChHHHHHHHhcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccc-cChhHHHHHHhhCCCCCeEecc
Q 016845 119 QSESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLR 197 (381)
Q Consensus 119 ~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~ 197 (381)
++....++...+..+...|.+|+.|.+.+. .+.+.....++ .-.+|+.|+|+++. ++..++..+...|..|..|+++
T Consensus 191 DLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNls 268 (419)
T KOG2120|consen 191 DLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLS 268 (419)
T ss_pred hcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCch
Confidence 555666888889999999999999999985 67776666665 45899999999986 8888889999999999999999
Q ss_pred CCCCCChHHHHHHHhhcCcCccEEeccCCC-CCCHHHHHHHHhcCCCCCEEEcccCC-CChhHHHHHHhcCCCCcEEEee
Q 016845 198 FCEGLTDTGLVDLAHGCGKSLKSLGIAACV-KITDVSLEAVGSHCKSLETLSLDSEF-IHNKGVHAVAQGCPLLRVLKLQ 275 (381)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~ 275 (381)
+|....+. +........++|+.|+++||. ++....++.+.+.||+|.+|+++.+. +++.-+..++
T Consensus 269 Wc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~------------ 335 (419)
T KOG2120|consen 269 WCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF------------ 335 (419)
T ss_pred Hhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH------------
Confidence 99855554 555555555899999999984 45556677777888888888887643 4443222222
Q ss_pred cccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 276 CINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELT 347 (381)
Q Consensus 276 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 347 (381)
.++.|++|.++.|..+..+.+..+-+ .|.|.+|++.+| +.|..++-+...||+|+
T Consensus 336 --------------kf~~L~~lSlsRCY~i~p~~~~~l~s-~psl~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 336 --------------KFNYLQHLSLSRCYDIIPETLLELNS-KPSLVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred --------------hcchheeeehhhhcCCChHHeeeecc-CcceEEEEeccc--cCchHHHHHHHhCcccc
Confidence 34555555555555444443333332 566666666665 34444444444455544
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=2.5e-13 Score=118.80 Aligned_cols=250 Identities=23% Similarity=0.177 Sum_probs=166.7
Q ss_pred eeeChHHHHHHHhcCCCccEEecCCCCCCChHH---HHHHHHhCCCCCEEEeeccccC--hhHHH---HHHhhCCCCCeE
Q 016845 123 YYLSDSGLNALADGFSKLEKLSLIWCSNISSLG---LMSLAQKCIHLKSLDLQGCYVG--DQGLA---AVGKVCNQLEDL 194 (381)
Q Consensus 123 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~--~~~~~---~~~~~~~~L~~L 194 (381)
..+++.....+....++|+.|++.++ .+++.+ +.......++|++|+++++.+. ...+. .....+++|+.|
T Consensus 8 ~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 86 (319)
T cd00116 8 ELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQEL 86 (319)
T ss_pred CcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEE
Confidence 33444444555555677999999987 565544 3444556778999999888766 33332 223346799999
Q ss_pred eccCCCCCCh---HHHHHHHhhcCcCccEEeccCCCCCCHHHHHHH---HhcC-CCCCEEEcccCCCChhHH---HHHHh
Q 016845 195 NLRFCEGLTD---TGLVDLAHGCGKSLKSLGIAACVKITDVSLEAV---GSHC-KSLETLSLDSEFIHNKGV---HAVAQ 264 (381)
Q Consensus 195 ~l~~~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~-~~L~~L~l~~~~~~~~~~---~~~~~ 264 (381)
+++++. +.. ..+..+... ++|++|++++|. +++.....+ ...+ ++|+.|++++|.++..+. ...+.
T Consensus 87 ~l~~~~-~~~~~~~~~~~l~~~--~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 87 DLSDNA-LGPDGCGVLESLLRS--SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred EccCCC-CChhHHHHHHHHhcc--CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 998876 332 222222221 459999999863 554444332 2345 889999999988875443 33345
Q ss_pred cCCCCcEEEeecccCCHHHHHHHHh---cCCCCCeEeccCCCCCCHHHHHHH---HhcCCCCCEEeccCCCCCCHHHHHH
Q 016845 265 GCPLLRVLKLQCINVTDEALVAVGN---QCLSLELLALYSFQQFTDKGLHAV---GKGCKKLKNLTLSDCYFLSDMGLEA 338 (381)
Q Consensus 265 ~~~~L~~L~l~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~i~~~~l~~ 338 (381)
.+++|+.|+++.+.+.+..+..+.. ..++|++|+++++ .+++.+...+ ...+++|++|++++|. +++.++..
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~ 240 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAA 240 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHH
Confidence 5678999999888888765554432 3469999999886 4665554443 3457889999999974 88877777
Q ss_pred HHhcC----CCCCEEeccCCCCCChHHHHHH---HhcCCccceeEcccC
Q 016845 339 IATGC----KELTHLEINGCHNIGTMGLESI---GKFCRYASFCRLNLN 380 (381)
Q Consensus 339 l~~~~----~~L~~L~l~~c~~~~~~~~~~l---~~~~~~L~~l~l~~~ 380 (381)
+...+ +.|+.|++.+| .+++.+...+ ...+++|++++++.|
T Consensus 241 l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 241 LASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 77664 79999999997 5655444433 444567888888765
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.60 E-value=3.9e-15 Score=137.94 Aligned_cols=242 Identities=35% Similarity=0.576 Sum_probs=165.2
Q ss_pred eChHHHHHHHhcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeecc-c-c--ChhHHHHHHhhCCCCCeEeccCCC
Q 016845 125 LSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGC-Y-V--GDQGLAAVGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 125 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~-~--~~~~~~~~~~~~~~L~~L~l~~~~ 200 (381)
........+...+++|++|.+..|..+++..+..+...+++|+.|+++++ . + .......+...|++|+.|++.++.
T Consensus 175 ~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 175 LLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred ccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 34455566666688899998888877877777778888899999998863 1 1 222234456667888899988887
Q ss_pred CCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCC-CChhHHHHHHhcCCCCcEEEeec---
Q 016845 201 GLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF-IHNKGVHAVAQGCPLLRVLKLQC--- 276 (381)
Q Consensus 201 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~--- 276 (381)
.+++.++..+...| ++|+.|.+.+|..+++.++..+...+++|++|+++++. +++.++..+...+++|+.|.+..
T Consensus 255 ~isd~~l~~l~~~c-~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~ 333 (482)
T KOG1947|consen 255 LVTDIGLSALASRC-PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG 333 (482)
T ss_pred ccCchhHHHHHhhC-CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC
Confidence 78888888888777 78999988888778888888888888889999998854 55666777777788877776531
Q ss_pred -ccCCHH------------HHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC--------------CEEeccCCC
Q 016845 277 -INVTDE------------ALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKL--------------KNLTLSDCY 329 (381)
Q Consensus 277 -~~~~~~------------~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L--------------~~L~l~~~~ 329 (381)
..+.+. ........+++++.+.+..+. ..+.+...+..+|++| +.|.+..|.
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~ 412 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCR 412 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCc
Confidence 122222 222333456667777666665 5555544445555544 666666666
Q ss_pred CCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhc
Q 016845 330 FLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKF 368 (381)
Q Consensus 330 ~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~ 368 (381)
.+++..+......+.+++.+++.+|..++...+..+...
T Consensus 413 ~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 413 LVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred cccccchHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 666666666655566666677777666666665555444
No 8
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.57 E-value=1.9e-14 Score=133.40 Aligned_cols=227 Identities=37% Similarity=0.601 Sum_probs=171.6
Q ss_pred eChHHHHHHHhcCCCccEEecCC-CCCCC--hHHHHHHHHhCCCCCEEEeeccc-cChhHHHHHHhhCCCCCeEeccCCC
Q 016845 125 LSDSGLNALADGFSKLEKLSLIW-CSNIS--SLGLMSLAQKCIHLKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 125 ~~~~~l~~l~~~~~~L~~L~l~~-~~~~~--~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 200 (381)
+.+..+..+...+++|+.|++.+ +.... ......+...+++|+.|+++.+. +++.++..++..|++|+.|.+.+|.
T Consensus 201 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 201 ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 45555777788899999999987 22222 22334466778999999999988 8889999999889999999988888
Q ss_pred CCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCC----CCh------------hHHHHHHh
Q 016845 201 GLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF----IHN------------KGVHAVAQ 264 (381)
Q Consensus 201 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~----~~~------------~~~~~~~~ 264 (381)
.+++.++..+...+ +.|++|++.+|..+++..+..+..++++|+.|.+.... +.. ........
T Consensus 281 ~lt~~gl~~i~~~~-~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~ 359 (482)
T KOG1947|consen 281 NLTDEGLVSIAERC-PSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILR 359 (482)
T ss_pred ccchhHHHHHHHhc-CcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHh
Confidence 88999999999888 78999999999988888888888889988887765421 221 33334456
Q ss_pred cCCCCcEEEeecccCCHHHHHHHHhcCCCC--------------CeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCC
Q 016845 265 GCPLLRVLKLQCINVTDEALVAVGNQCLSL--------------ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYF 330 (381)
Q Consensus 265 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L--------------~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 330 (381)
.+++++.+.+......+.....+...||.| +.|.++.+...++..+......+.+++.+++.+|..
T Consensus 360 ~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 360 SCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 789999999964445555544555566655 888888888888888877766688899999999998
Q ss_pred CCHHHHHHHHhcCCCCCEEeccC
Q 016845 331 LSDMGLEAIATGCKELTHLEING 353 (381)
Q Consensus 331 i~~~~l~~l~~~~~~L~~L~l~~ 353 (381)
++......+.... ......+..
T Consensus 440 ~~~~~~~~~~~~~-~~~~~~~~~ 461 (482)
T KOG1947|consen 440 ITLKSLEGFASNC-DLISLDVGL 461 (482)
T ss_pred ccchhhhhhhccc-ccccccccc
Confidence 8888777666544 454444443
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.38 E-value=2.5e-12 Score=128.97 Aligned_cols=228 Identities=17% Similarity=0.053 Sum_probs=132.1
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
+++|+.|+++++ .++. .+......+++|++|++++|.+.......+ ..+++|++|+++++. +.......+ .. .+
T Consensus 139 l~~L~~L~Ls~n-~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~p~~l-~~-l~ 212 (968)
T PLN00113 139 IPNLETLDLSNN-MLSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQ-LVGQIPREL-GQ-MK 212 (968)
T ss_pred cCCCCEEECcCC-cccc-cCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCC-CcCcCChHH-cC-cC
Confidence 567777777765 2221 222334467788888888776554332333 346778888887665 221111111 22 26
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCe
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (381)
+|+.|++.++. +.......+ ..+++|++|++++|.+... +...+..+++|+.|+++.+.+.......+. .+++|++
T Consensus 213 ~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~ 288 (968)
T PLN00113 213 SLKWIYLGYNN-LSGEIPYEI-GGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLIS 288 (968)
T ss_pred CccEEECcCCc-cCCcCChhH-hcCCCCCEEECcCceeccc-cChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCE
Confidence 78888887742 222211222 4678888888887765432 222345577888888876665432222222 5678888
Q ss_pred EeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeE
Q 016845 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCR 376 (381)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~ 376 (381)
|+++++. +... +......+++|+.|+++++. ++... ...+..+++|+.|++.+|. ++.. +......+++|+.|+
T Consensus 289 L~Ls~n~-l~~~-~p~~~~~l~~L~~L~l~~n~-~~~~~-~~~~~~l~~L~~L~L~~n~-l~~~-~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 289 LDLSDNS-LSGE-IPELVIQLQNLEILHLFSNN-FTGKI-PVALTSLPRLQVLQLWSNK-FSGE-IPKNLGKHNNLTVLD 362 (968)
T ss_pred EECcCCe-eccC-CChhHcCCCCCcEEECCCCc-cCCcC-ChhHhcCCCCCEEECcCCC-CcCc-CChHHhCCCCCcEEE
Confidence 8887753 3222 22223457889999988864 33322 2223458899999998864 3322 223334678999998
Q ss_pred cccC
Q 016845 377 LNLN 380 (381)
Q Consensus 377 l~~~ 380 (381)
+..+
T Consensus 363 Ls~n 366 (968)
T PLN00113 363 LSTN 366 (968)
T ss_pred CCCC
Confidence 8754
No 10
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=1.1e-10 Score=96.64 Aligned_cols=235 Identities=23% Similarity=0.262 Sum_probs=152.8
Q ss_pred HhcCCCccEEecCCCC--CCChH------HHHHHHHhCCCCCEEEeeccccChhH---HHHHHhhCCCCCeEeccCCCCC
Q 016845 134 ADGFSKLEKLSLIWCS--NISSL------GLMSLAQKCIHLKSLDLQGCYVGDQG---LAAVGKVCNQLEDLNLRFCEGL 202 (381)
Q Consensus 134 ~~~~~~L~~L~l~~~~--~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~ 202 (381)
...-++|+..++++.. +.-+. .+...+.++|.|+.|+|+.|.++..+ +..+...|.+|++|.|.+|. +
T Consensus 54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-l 132 (382)
T KOG1909|consen 54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-L 132 (382)
T ss_pred HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-C
Confidence 3445678888877531 11111 12233457899999999999877544 45556678899999999875 5
Q ss_pred ChHHHHHHHh-----------hcCcCccEEeccCCCCCCHHH---HHHHHhcCCCCCEEEcccCCCChhHHHHH---Hhc
Q 016845 203 TDTGLVDLAH-----------GCGKSLKSLGIAACVKITDVS---LEAVGSHCKSLETLSLDSEFIHNKGVHAV---AQG 265 (381)
Q Consensus 203 ~~~~~~~~~~-----------~~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~ 265 (381)
...+-..+.. ...+.|+.+..... ...+.+ +....+..|.|+.+.+..|.+..++...+ +..
T Consensus 133 g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~ 211 (382)
T KOG1909|consen 133 GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH 211 (382)
T ss_pred ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh
Confidence 5543222211 12367888877663 333332 34445677899999999888877766333 356
Q ss_pred CCCCcEEEeecccCCHHHHHH---HHhcCCCCCeEeccCCCCCCHHHH----HHHHhcCCCCCEEeccCCCCCCHHHHHH
Q 016845 266 CPLLRVLKLQCINVTDEALVA---VGNQCLSLELLALYSFQQFTDKGL----HAVGKGCKKLKNLTLSDCYFLSDMGLEA 338 (381)
Q Consensus 266 ~~~L~~L~l~~~~~~~~~l~~---l~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~~L~~L~l~~~~~i~~~~l~~ 338 (381)
||+|+.|++..|.++..+-.. ....+|+|+.|++++|. +.+.+. ..+....|+|+.|.+.+|. ++.++...
T Consensus 212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~ 289 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALA 289 (382)
T ss_pred CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHH
Confidence 899999999888887654333 33467888999999885 444443 3444567899999999964 77665554
Q ss_pred HHh---cCCCCCEEeccCCCCC-ChHHHHHHHhcCCcc
Q 016845 339 IAT---GCKELTHLEINGCHNI-GTMGLESIGKFCRYA 372 (381)
Q Consensus 339 l~~---~~~~L~~L~l~~c~~~-~~~~~~~l~~~~~~L 372 (381)
+.. ..|.|+.|+|.+|..- .++++..+....+..
T Consensus 290 la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~~~ 327 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFDTA 327 (382)
T ss_pred HHHHHhcchhhHHhcCCcccccccchhHHHHHHhcccc
Confidence 433 3688999999996431 455666666655433
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=1e-10 Score=96.87 Aligned_cols=244 Identities=22% Similarity=0.266 Sum_probs=165.5
Q ss_pred HHHHHhcCCCccEEecCCCCCCChHHHHHH---HHhCCCCCEEEeeccccC---hhH------HHHHHhhCCCCCeEecc
Q 016845 130 LNALADGFSKLEKLSLIWCSNISSLGLMSL---AQKCIHLKSLDLQGCYVG---DQG------LAAVGKVCNQLEDLNLR 197 (381)
Q Consensus 130 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~---~~~------~~~~~~~~~~L~~L~l~ 197 (381)
+.........++.|++++. .+.......+ +..-++|+..+++....+ +.. +......||.|+.|+|+
T Consensus 22 v~~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 3344455789999999985 5555544433 445577888887765422 111 22333468899999999
Q ss_pred CCCCCCh---HHHHHHHhhcCcCccEEeccCCCCCCHHHHHH------------HHhcCCCCCEEEcccCCCChhH---H
Q 016845 198 FCEGLTD---TGLVDLAHGCGKSLKSLGIAACVKITDVSLEA------------VGSHCKSLETLSLDSEFIHNKG---V 259 (381)
Q Consensus 198 ~~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------l~~~~~~L~~L~l~~~~~~~~~---~ 259 (381)
.+. +.+ .++..+...+ ..|++|.+.+|. +....-.. .+..-|+|+.+....|.+.+.+ +
T Consensus 101 DNA-~G~~g~~~l~~ll~s~-~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 101 DNA-FGPKGIRGLEELLSSC-TDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred ccc-cCccchHHHHHHHHhc-cCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence 765 443 4566677776 799999999973 33332222 2235678999999888776554 4
Q ss_pred HHHHhcCCCCcEEEeecccCCHHHH---HHHHhcCCCCCeEeccCCCCCCHHHHHHH---HhcCCCCCEEeccCCCCCCH
Q 016845 260 HAVAQGCPLLRVLKLQCINVTDEAL---VAVGNQCLSLELLALYSFQQFTDKGLHAV---GKGCKKLKNLTLSDCYFLSD 333 (381)
Q Consensus 260 ~~~~~~~~~L~~L~l~~~~~~~~~l---~~l~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~i~~ 333 (381)
...++..|.|+.+.+..+.+...+. ..-..+||+|+.|++.++ .++..+-..+ ....|+|+.|++++|. +.+
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcl-l~~ 255 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCL-LEN 255 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccc-ccc
Confidence 5566778999999998888766544 223358999999999884 4665544433 3457889999999995 655
Q ss_pred HHHHH----HHhcCCCCCEEeccCCCCCChHHHH---HHHhcCCccceeEcccC
Q 016845 334 MGLEA----IATGCKELTHLEINGCHNIGTMGLE---SIGKFCRYASFCRLNLN 380 (381)
Q Consensus 334 ~~l~~----l~~~~~~L~~L~l~~c~~~~~~~~~---~l~~~~~~L~~l~l~~~ 380 (381)
.+... +-.+.|+|+.|.+.+| .++.++.. .-+..-|.|..|.|+.|
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 54444 4446799999999995 56665432 22344799999998876
No 12
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.31 E-value=9e-12 Score=125.07 Aligned_cols=230 Identities=19% Similarity=0.108 Sum_probs=136.2
Q ss_pred HHhcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHh
Q 016845 133 LADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAH 212 (381)
Q Consensus 133 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 212 (381)
+...+++|+.|+++++. ++.. ++ ...+++|++|++++|.+.......+ ..+++|++|+++++. +.......+ .
T Consensus 113 ~~~~l~~L~~L~Ls~n~-l~~~-~p--~~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~p~~~-~ 185 (968)
T PLN00113 113 IFTTSSSLRYLNLSNNN-FTGS-IP--RGSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNV-LVGKIPNSL-T 185 (968)
T ss_pred HhccCCCCCEEECcCCc-cccc-cC--ccccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCc-ccccCChhh-h
Confidence 34356778888887652 2211 11 1246788888888877654333333 357888888888765 221111111 2
Q ss_pred hcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCC
Q 016845 213 GCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 292 (381)
Q Consensus 213 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~ 292 (381)
. .++|+.|++.++. +.......+ ..+++|+.|++++|.+..... ..+..+++|+.|+++.+.+.......+ ..++
T Consensus 186 ~-l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~ 260 (968)
T PLN00113 186 N-LTSLEFLTLASNQ-LVGQIPREL-GQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLK 260 (968)
T ss_pred h-CcCCCeeeccCCC-CcCcCChHH-cCcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCceeccccChhH-hCCC
Confidence 2 2688888888753 222212222 467888888888877654322 223557889999888766654322233 3578
Q ss_pred CCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCcc
Q 016845 293 SLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYA 372 (381)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L 372 (381)
+|++|+++++. +.......+ ..+++|++|++++|. ++.. +...+..+++|+.|++++|. ++.. +......+++|
T Consensus 261 ~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L 334 (968)
T PLN00113 261 NLQYLFLYQNK-LSGPIPPSI-FSLQKLISLDLSDNS-LSGE-IPELVIQLQNLEILHLFSNN-FTGK-IPVALTSLPRL 334 (968)
T ss_pred CCCEEECcCCe-eeccCchhH-hhccCcCEEECcCCe-eccC-CChhHcCCCCCcEEECCCCc-cCCc-CChhHhcCCCC
Confidence 89999988754 322211222 247889999998864 4322 22334568899999998864 3332 22333467999
Q ss_pred ceeEcccC
Q 016845 373 SFCRLNLN 380 (381)
Q Consensus 373 ~~l~l~~~ 380 (381)
+.|++..+
T Consensus 335 ~~L~L~~n 342 (968)
T PLN00113 335 QVLQLWSN 342 (968)
T ss_pred CEEECcCC
Confidence 99988654
No 13
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.28 E-value=1.2e-12 Score=78.07 Aligned_cols=43 Identities=42% Similarity=0.639 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhcccceeeec
Q 016845 10 CLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIG 53 (381)
Q Consensus 10 ~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~ 53 (381)
.||+||+.+||+||+ .+|+.++++|||+|+.++.+...|.++.
T Consensus 3 ~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 3 SLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred HhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 799999999999999 6999999999999999998777776553
No 14
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.7e-12 Score=109.03 Aligned_cols=210 Identities=21% Similarity=0.152 Sum_probs=112.5
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccCh-hHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhc
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGD-QGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 214 (381)
...+|+++.+.++ .+...+.....+.||+++.|+|+.+-+.. ..+..+++.+|+|+.|+++.+...... .......
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~--~s~~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI--SSNTTLL 195 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc--cccchhh
Confidence 3456777777765 44444443556677888888888776543 345566777788888887754421110 0000001
Q ss_pred CcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCC-CChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCC
Q 016845 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF-IHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLS 293 (381)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 293 (381)
.+.|+.|.++.| +++...+..+...+|+|+.|.+.+|. +...... ..-+..|++|+|+.+.+-+.........+|.
T Consensus 196 l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcccccccccccccccc
Confidence 256777777776 45566666666677777777777653 2111100 1113457777776655544332223335666
Q ss_pred CCeEeccCCCCCC----HHHHHHHHhcCCCCCEEeccCCCCCCH-HHHHHHHhcCCCCCEEeccC
Q 016845 294 LELLALYSFQQFT----DKGLHAVGKGCKKLKNLTLSDCYFLSD-MGLEAIATGCKELTHLEING 353 (381)
Q Consensus 294 L~~L~l~~~~~~~----~~~~~~l~~~~~~L~~L~l~~~~~i~~-~~l~~l~~~~~~L~~L~l~~ 353 (381)
|+.|.+..+..-+ +.+.......+++|++|++..+. +.+ ..+..+ ..+++|+.|.+.+
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l-~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHL-RTLENLKHLRITL 335 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchh-hccchhhhhhccc
Confidence 7666666543111 11112223346777777777643 322 223333 2356666666543
No 15
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.09 E-value=7e-10 Score=104.38 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=71.8
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
.+|++|+++|...+...-...+...+|.|++|.+.+-.+..+.+..+...+|+|..|++++.++++- ..+. +.++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS-~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGIS-RLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHh-ccccHH
Confidence 3555555555333322223344445555555555554444444555555555555555555554432 1222 345555
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHH-HHHHH---HhcCCCCCEEeccCCCCCChHHHHHHHhcCCc
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDM-GLEAI---ATGCKELTHLEINGCHNIGTMGLESIGKFCRY 371 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~-~l~~l---~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~ 371 (381)
.|.+.+..--+...+..++. +++|+.|+++......+. -+... ...+|+|+.|+.++ ..++.+.++.+.+.=|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPN 276 (699)
T ss_pred HHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCcc
Confidence 55555433223334444443 555555555554332222 11111 11245555555555 34555555555554455
Q ss_pred cce
Q 016845 372 ASF 374 (381)
Q Consensus 372 L~~ 374 (381)
|+.
T Consensus 277 L~~ 279 (699)
T KOG3665|consen 277 LQQ 279 (699)
T ss_pred Hhh
Confidence 444
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.7e-11 Score=101.64 Aligned_cols=215 Identities=18% Similarity=0.123 Sum_probs=146.0
Q ss_pred HHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHH
Q 016845 156 LMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLE 235 (381)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 235 (381)
+.+--.++.+|++..|.++.+...+.....+.||+++.|+++.+-...-..+..++... |+|+.|+++... +....-.
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqL-p~Le~LNls~Nr-l~~~~~s 190 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQL-PSLENLNLSSNR-LSNFISS 190 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhc-ccchhccccccc-ccCCccc
Confidence 34444567889999999998877665567778999999999975422333455555554 899999998742 1111111
Q ss_pred HHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeeccc-CCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHH
Q 016845 236 AVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVG 314 (381)
Q Consensus 236 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (381)
.....+++|+.|.+++|+++...+..+...+|+|+.|.+..|. +....... .....|+.|+|+++..++.+.+...
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~- 267 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKV- 267 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccccccccc-
Confidence 1122678999999999999999999999999999999998663 21111110 1235799999999776654444333
Q ss_pred hcCCCCCEEeccCCCCCCH-----HHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEc
Q 016845 315 KGCKKLKNLTLSDCYFLSD-----MGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRL 377 (381)
Q Consensus 315 ~~~~~L~~L~l~~~~~i~~-----~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l 377 (381)
..+|+|+.|+++.|. +++ .+.......+|+|+.|++...+-..+..+..+. ..++|+.|.+
T Consensus 268 ~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~ 333 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRI 333 (505)
T ss_pred ccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhc
Confidence 358999999998863 433 222233456899999999985444455555554 4577777654
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.03 E-value=2.1e-11 Score=107.51 Aligned_cols=133 Identities=19% Similarity=0.136 Sum_probs=72.2
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 016845 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKK 319 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 319 (381)
++..|+.|++++|.+........ ..+++|+.|+++.|.++.-.-..+. ....|++|.|+.+. ++.- ....+.++.+
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~W-sftqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~LnLs~Ns-i~~l-~e~af~~lss 366 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSW-SFTQKLKELDLSSNRITRLDEGSFR-VLSQLEELNLSHNS-IDHL-AEGAFVGLSS 366 (873)
T ss_pred ccchhhhhccchhhhheeecchh-hhcccceeEeccccccccCChhHHH-HHHHhhhhcccccc-hHHH-HhhHHHHhhh
Confidence 45556666666554322111111 1256777777776655432111111 23457777776632 2211 1122345788
Q ss_pred CCEEeccCCC---CCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 320 LKNLTLSDCY---FLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 320 L~~L~l~~~~---~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
|+.|+++.+. -|.| + .....+++.|++|.+.| +++..-.-.++. ..++|++|+|.-|
T Consensus 367 L~~LdLr~N~ls~~IED-a-a~~f~gl~~LrkL~l~g-Nqlk~I~krAfs-gl~~LE~LdL~~N 426 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIED-A-AVAFNGLPSLRKLRLTG-NQLKSIPKRAFS-GLEALEHLDLGDN 426 (873)
T ss_pred hhhhcCcCCeEEEEEec-c-hhhhccchhhhheeecC-ceeeecchhhhc-cCcccceecCCCC
Confidence 9999988752 1222 2 23345699999999998 455544334443 6789999887543
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.01 E-value=1.3e-09 Score=110.33 Aligned_cols=101 Identities=24% Similarity=0.300 Sum_probs=54.6
Q ss_pred cccceeeChHHHHHHH---hcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEe
Q 016845 119 QSESYYLSDSGLNALA---DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLN 195 (381)
Q Consensus 119 ~l~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 195 (381)
++..+.+....+..+. ..+++|+.|+++++..+.. ++. ...+++|+.|+|.+|..-.. ++.....+++|+.|+
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~--ip~-ls~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE--IPD-LSMATNLETLKLSDCSSLVE-LPSSIQYLNKLEDLD 687 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCc--CCc-cccCCcccEEEecCCCCccc-cchhhhccCCCCEEe
Confidence 4555555544444332 2467888888876543321 112 23567888888887753222 222234567788888
Q ss_pred ccCCCCCChHHHHHHHhhcCcCccEEeccCCC
Q 016845 196 LRFCEGLTDTGLVDLAHGCGKSLKSLGIAACV 227 (381)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 227 (381)
+++|..+...... . . .++|+.|++.+|.
T Consensus 688 L~~c~~L~~Lp~~--i-~-l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 688 MSRCENLEILPTG--I-N-LKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCCCcCccCCc--C-C-CCCCCEEeCCCCC
Confidence 8777644321110 0 1 2567777777664
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.95 E-value=7.6e-11 Score=104.07 Aligned_cols=133 Identities=19% Similarity=0.212 Sum_probs=57.1
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
..|+|+++.+... .+ ..++.+.....+|+.|+|.++.|+.-.-+.+. ..|.|+.|+|+.+. ++......+.+ .
T Consensus 100 nl~nLq~v~l~~N-~L--t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~-~l~alrslDLSrN~-is~i~~~sfp~--~ 172 (873)
T KOG4194|consen 100 NLPNLQEVNLNKN-EL--TRIPRFGHESGHLEKLDLRHNLISSVTSEELS-ALPALRSLDLSRNL-ISEIPKPSFPA--K 172 (873)
T ss_pred cCCcceeeeeccc-hh--hhcccccccccceeEEeeeccccccccHHHHH-hHhhhhhhhhhhch-hhcccCCCCCC--C
Confidence 3667777766542 11 12333333334566666666654432222222 24455555555432 22111111111 1
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeeccc
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN 278 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 278 (381)
.++++|++++ ..+++.....+ ..+.+|..|.++.|+++.-... .++.+|+|+.|++..|.
T Consensus 173 ~ni~~L~La~-N~It~l~~~~F-~~lnsL~tlkLsrNrittLp~r-~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 173 VNIKKLNLAS-NRITTLETGHF-DSLNSLLTLKLSRNRITTLPQR-SFKRLPKLESLDLNRNR 232 (873)
T ss_pred CCceEEeecc-ccccccccccc-cccchheeeecccCcccccCHH-Hhhhcchhhhhhccccc
Confidence 3555666555 23333222222 1334555555555554433322 22335555555554333
No 20
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.87 E-value=1.1e-07 Score=76.62 Aligned_cols=215 Identities=19% Similarity=0.176 Sum_probs=112.0
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCC---CCCeEeccCCCC--CChH---H---HHHHHhhcCcCccEEeccCCCC--
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCN---QLEDLNLRFCEG--LTDT---G---LVDLAHGCGKSLKSLGIAACVK-- 228 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~--~~~~---~---~~~~~~~~~~~L~~L~l~~~~~-- 228 (381)
.+..++.++|+++.++......++.... +|+..+++.... ..+. . +......| |+|+..++++...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkc-p~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC-PRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcC-CcceeeeccccccCc
Confidence 3556666666666666555554444332 333333332110 0111 0 11112234 6677777766321
Q ss_pred CCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHH------------HhcCCCCcEEEeecccCCH---HHHHHHHhcCCC
Q 016845 229 ITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAV------------AQGCPLLRVLKLQCINVTD---EALVAVGNQCLS 293 (381)
Q Consensus 229 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~------------~~~~~~L~~L~l~~~~~~~---~~l~~l~~~~~~ 293 (381)
-....+..+..+...|++|.+++|.+.+.+-..+ ...-|.|+....+.|.+.+ ..+........+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 1112233444566677777777776654321111 1234677777776554433 222333333357
Q ss_pred CCeEeccCCCCCCHHHHHHHH----hcCCCCCEEeccCCCCCCHHH---HHHHHhcCCCCCEEeccCCCCCChHHHHHHH
Q 016845 294 LELLALYSFQQFTDKGLHAVG----KGCKKLKNLTLSDCYFLSDMG---LEAIATGCKELTHLEINGCHNIGTMGLESIG 366 (381)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~i~~~~---l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~ 366 (381)
|+.+.+.++ .+..+++..+. ..+.+|+.|++..+. +|-.+ +......++.|+.|.+..|- ++.+++..+.
T Consensus 187 lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~ 263 (388)
T COG5238 187 LKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVL 263 (388)
T ss_pred ceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHH
Confidence 788888763 45555554332 247788888888754 44333 33334456778888888883 3444443333
Q ss_pred -----hcCCccceeEcccC
Q 016845 367 -----KFCRYASFCRLNLN 380 (381)
Q Consensus 367 -----~~~~~L~~l~l~~~ 380 (381)
...|+|..|..+||
T Consensus 264 ~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 264 RRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHhhhhcCCCccccccchh
Confidence 23578888877775
No 21
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.84 E-value=1.3e-08 Score=95.93 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=111.0
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCCh-HHHHHHHhhcCc
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTD-TGLVDLAHGCGK 216 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~ 216 (381)
.+|++|++++...++......+...+|+|++|.+.+..+..+.+..++..+|+|..|+++++. ++. .|+.. .+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~-----Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISR-----LK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhc-----cc
Confidence 589999998876677777777888889999999998887777788888889999999999876 443 23333 26
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhH--H---HHHHhcCCCCcEEEeecccCCHHHHHHHHhcC
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKG--V---HAVAQGCPLLRVLKLQCINVTDEALVAVGNQC 291 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~--~---~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~ 291 (381)
+|+.|.+.+-.-.+...+..+. .+.+|+.|+++........ + ......+|.|+.|+.++..++...+..+....
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH 274 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH 274 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence 7888877764333335566664 7889999999874332222 1 12223578899999888888888887777666
Q ss_pred CCCCeEec
Q 016845 292 LSLELLAL 299 (381)
Q Consensus 292 ~~L~~L~l 299 (381)
|+|+.+..
T Consensus 275 ~~L~~i~~ 282 (699)
T KOG3665|consen 275 PNLQQIAA 282 (699)
T ss_pred ccHhhhhh
Confidence 77666554
No 22
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.82 E-value=3.9e-09 Score=61.08 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=35.3
Q ss_pred CCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhccccee
Q 016845 11 LPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTL 50 (381)
Q Consensus 11 LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~ 50 (381)
||+|++..||.+|+ .+|+.+++.|||+|+.++.....|.
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcChhhhh
Confidence 79999999999999 6999999999999999987766554
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.77 E-value=1.7e-08 Score=102.30 Aligned_cols=200 Identities=20% Similarity=0.257 Sum_probs=98.7
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcC
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 217 (381)
.+|+.|++.++ .+. .+......+++|+.|+|+++..-. .++.+ ..+++|+.|++.+|..+... ...... .++
T Consensus 611 ~~L~~L~L~~s-~l~--~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~l-s~l~~Le~L~L~~c~~L~~l--p~si~~-L~~ 682 (1153)
T PLN03210 611 ENLVKLQMQGS-KLE--KLWDGVHSLTGLRNIDLRGSKNLK-EIPDL-SMATNLETLKLSDCSSLVEL--PSSIQY-LNK 682 (1153)
T ss_pred cCCcEEECcCc-ccc--ccccccccCCCCCEEECCCCCCcC-cCCcc-ccCCcccEEEecCCCCcccc--chhhhc-cCC
Confidence 45666666553 221 122223457788888887654111 11122 24678888888877644321 111222 268
Q ss_pred ccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHH--------------
Q 016845 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEA-------------- 283 (381)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------- 283 (381)
|+.|++.+|..+..... . ..+++|+.|++++|.... .+....++|+.|+++++.+..-.
T Consensus 683 L~~L~L~~c~~L~~Lp~--~-i~l~sL~~L~Lsgc~~L~----~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 683 LEDLDMSRCENLEILPT--G-INLKSLYRLNLSGCSRLK----SFPDISTNISWLDLDETAIEEFPSNLRLENLDELILC 755 (1153)
T ss_pred CCEEeCCCCCCcCccCC--c-CCCCCCCEEeCCCCCCcc----ccccccCCcCeeecCCCcccccccccccccccccccc
Confidence 88888888765433211 0 146677777777653211 11111235555555444322100
Q ss_pred -------------H-HHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEE
Q 016845 284 -------------L-VAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHL 349 (381)
Q Consensus 284 -------------l-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 349 (381)
+ ......+++|+.|+++++..... +..-..++++|+.|++++|..+.. +.... .+++|+.|
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L 830 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLET--LPTGI-NLESLESL 830 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCe--eCCCC-CccccCEE
Confidence 0 00011234666666666543221 111123477777777777755432 11111 35667777
Q ss_pred eccCCCCC
Q 016845 350 EINGCHNI 357 (381)
Q Consensus 350 ~l~~c~~~ 357 (381)
++++|..+
T Consensus 831 ~Ls~c~~L 838 (1153)
T PLN03210 831 DLSGCSRL 838 (1153)
T ss_pred ECCCCCcc
Confidence 77776544
No 24
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.74 E-value=3.2e-09 Score=63.77 Aligned_cols=40 Identities=38% Similarity=0.473 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhccccee
Q 016845 10 CLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTL 50 (381)
Q Consensus 10 ~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~ 50 (381)
+||+|++.+||++|+ .+|+++++.|||+|++++.+...|.
T Consensus 5 ~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 5 DLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred HCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcCCCccH
Confidence 799999999999999 6999999999999999987765543
No 25
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=7.1e-09 Score=84.34 Aligned_cols=205 Identities=15% Similarity=0.104 Sum_probs=103.8
Q ss_pred ccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccCh-hHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCc
Q 016845 140 LEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGD-QGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSL 218 (381)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 218 (381)
++-+.+.++.--+...+..+...+..+++++|.++.+++ ..+..+.+.+|.|+.|+|+.+..-++ +...... ..+|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~~lp~p-~~nl 123 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IKSLPLP-LKNL 123 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--cccCccc-ccce
Confidence 344556665444556677777788889999999988776 34567777888899998886542222 1121111 1467
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCC-----ChhHHHHHHhcCCCCcEEEeecccC-CHHHHHHHHhcCC
Q 016845 219 KSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFI-----HNKGVHAVAQGCPLLRVLKLQCINV-TDEALVAVGNQCL 292 (381)
Q Consensus 219 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~l~~l~~~~~ 292 (381)
+.|.+.+ ..++-.........+|.++.|.++.|++ .++... ...+.+++|+...+.. --.....+.+.+|
T Consensus 124 ~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e---~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 124 RVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE---DWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred EEEEEcC-CCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccc---ccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 7777766 3444444444455666666666655421 111110 0112344444421111 1111223334456
Q ss_pred CCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCH-HHHHHHHhcCCCCCEEeccCC
Q 016845 293 SLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSD-MGLEAIATGCKELTHLEINGC 354 (381)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~-~~l~~l~~~~~~L~~L~l~~c 354 (381)
++..+-+..++ +.+..-..-...+|.+--|.++.. ++.+ +++.++ .++|.|..|.+...
T Consensus 200 nv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~L-n~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 200 NVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDAL-NGFPQLVDLRVSEN 259 (418)
T ss_pred cchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHHHHHHH-cCCchhheeeccCC
Confidence 66665555543 222222222222444444555543 2433 333333 34666666666654
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=4.6e-08 Score=75.77 Aligned_cols=61 Identities=25% Similarity=0.182 Sum_probs=19.7
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHH--HHHHHHhcCCCCCeEecc
Q 016845 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDE--ALVAVGNQCLSLELLALY 300 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~l~~l~~~~~~L~~L~l~ 300 (381)
.+|+|++|.+++|.+.+..-......+|+|+.|++.+|.+.+. .-..+...+|+|+.|+-.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 3555555555555443321111223455566666654444321 112223345666666553
No 27
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.49 E-value=2.8e-09 Score=95.33 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=38.8
Q ss_pred cccceeeChHHHHHHH---hcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEe
Q 016845 119 QSESYYLSDSGLNALA---DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLN 195 (381)
Q Consensus 119 ~l~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 195 (381)
.++++.+..+.+..+. ..+|.|+.+.+... .+...+++.-+..+..|..|+|+++++.. .+.-.+..+++-.|+
T Consensus 56 kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLN 132 (1255)
T ss_pred hhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhh--cchhhhhhcCcEEEE
Confidence 3444444444444332 23556666665543 23333333333356677777777776542 111122345666666
Q ss_pred ccCCC
Q 016845 196 LRFCE 200 (381)
Q Consensus 196 l~~~~ 200 (381)
|+++.
T Consensus 133 LS~N~ 137 (1255)
T KOG0444|consen 133 LSYNN 137 (1255)
T ss_pred cccCc
Confidence 66544
No 28
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=2.5e-07 Score=71.26 Aligned_cols=106 Identities=19% Similarity=0.243 Sum_probs=84.9
Q ss_pred CcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCE
Q 016845 269 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 348 (381)
Q Consensus 269 L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 348 (381)
++.++-++..+...++..+. .++.++.|.+.+|..+.|..+..+....++|+.|+|++|+.||+.++..+.. +++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHH
Confidence 55555566777777887776 6899999999999999999999998888999999999999999999998876 999999
Q ss_pred EeccCCCCCChH-H-HHHHHhcCCccceeE
Q 016845 349 LEINGCHNIGTM-G-LESIGKFCRYASFCR 376 (381)
Q Consensus 349 L~l~~c~~~~~~-~-~~~l~~~~~~L~~l~ 376 (381)
|.+.+=+.+... . ...+-+.+|+++..-
T Consensus 181 L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~ 210 (221)
T KOG3864|consen 181 LHLYDLPYVANLELVQRQLEEALPKCDIVG 210 (221)
T ss_pred HHhcCchhhhchHHHHHHHHHhCcccceec
Confidence 999886665442 2 233556678877653
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.36 E-value=8.6e-08 Score=74.26 Aligned_cols=129 Identities=20% Similarity=0.253 Sum_probs=48.0
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
.++++|++.++ .++. ++.+...+.+|+.|++++|.+..-. . +..+++|+.|.++.|.++.-. ..+...+|+|+
T Consensus 19 ~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~--~-l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~ 91 (175)
T PF14580_consen 19 VKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQITKLE--G-LPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQ 91 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T--T-----TT--EEE--SS---S-C-HHHHHH-TT--
T ss_pred ccccccccccc-cccc--ccchhhhhcCCCEEECCCCCCcccc--C-ccChhhhhhcccCCCCCCccc-cchHHhCCcCC
Confidence 36788888874 3332 3344445778999999988776422 1 234788999999888876531 12333578999
Q ss_pred eEeccCCCCCCH-HHHHHHHhcCCCCCEEeccCCCCCCH--HHHHHHHhcCCCCCEEeccCC
Q 016845 296 LLALYSFQQFTD-KGLHAVGKGCKKLKNLTLSDCYFLSD--MGLEAIATGCKELTHLEINGC 354 (381)
Q Consensus 296 ~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~i~~--~~l~~l~~~~~~L~~L~l~~c 354 (381)
+|.++++. +.+ ..+..+ +.+|+|+.|++.+++ +++ ..-..++..+|+|+.|+-...
T Consensus 92 ~L~L~~N~-I~~l~~l~~L-~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 92 ELYLSNNK-ISDLNELEPL-SSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EEE-TTS----SCCCCGGG-GG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred EEECcCCc-CCChHHhHHH-HcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 99998753 332 223333 348999999998875 432 223345566899998877654
No 30
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1e-06 Score=72.12 Aligned_cols=192 Identities=14% Similarity=0.057 Sum_probs=117.0
Q ss_pred HHHHHhcCCCccEEecCCCCCCCh-HHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHH
Q 016845 130 LNALADGFSKLEKLSLIWCSNISS-LGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLV 208 (381)
Q Consensus 130 l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 208 (381)
+..+...++.++.+++.+. .+++ ..+..+..++|.|+.|+|+.+.+... +..+.....+|+.|-+.+.. ++.....
T Consensus 63 ~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~-L~w~~~~ 139 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTG-LSWTQST 139 (418)
T ss_pred HHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCC-CChhhhh
Confidence 5566777899999999985 4554 46788899999999999999986542 22222235689999998754 6655555
Q ss_pred HHHhhcCcCccEEeccCCC----CCCHHHHHHHHhcCCCCCEEEcccCCC-ChhHHHHHHhcCCCCcEEEeecccCCHHH
Q 016845 209 DLAHGCGKSLKSLGIAACV----KITDVSLEAVGSHCKSLETLSLDSEFI-HNKGVHAVAQGCPLLRVLKLQCINVTDEA 283 (381)
Q Consensus 209 ~~~~~~~~~L~~L~l~~~~----~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 283 (381)
.+.... |.++.|+++... ++.+...+. .-|.+.+|....|.. .......+.+-+|++..+-+..+.+.+..
T Consensus 140 s~l~~l-P~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s 215 (418)
T KOG2982|consen 140 SSLDDL-PKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTES 215 (418)
T ss_pred hhhhcc-hhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchh
Confidence 555554 788888887631 122222222 123455555554432 12223445556777777777555444433
Q ss_pred HHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 284 LVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 329 (381)
Q Consensus 284 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 329 (381)
...-...+|.+-.|.++....-+.+++.++.+ ++.|..|.+++.+
T Consensus 216 ~ek~se~~p~~~~LnL~~~~idswasvD~Ln~-f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 216 SEKGSEPFPSLSCLNLGANNIDSWASVDALNG-FPQLVDLRVSENP 260 (418)
T ss_pred hcccCCCCCcchhhhhcccccccHHHHHHHcC-CchhheeeccCCc
Confidence 33333345666666666543334455555554 7777777777654
No 31
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.36 E-value=3.2e-08 Score=92.39 Aligned_cols=129 Identities=22% Similarity=0.200 Sum_probs=74.1
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
+.|+.|.+.+ ..+++..+..+ .++++|+.|++++|.+..-... ....++.|++|.+++|.+..-. ..+ ..|+.|+
T Consensus 359 ~~Lq~Lylan-N~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas-~~~kle~LeeL~LSGNkL~~Lp-~tv-a~~~~L~ 433 (1081)
T KOG0618|consen 359 AALQELYLAN-NHLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPAS-KLRKLEELEELNLSGNKLTTLP-DTV-ANLGRLH 433 (1081)
T ss_pred HHHHHHHHhc-Ccccccchhhh-ccccceeeeeecccccccCCHH-HHhchHHhHHHhcccchhhhhh-HHH-HhhhhhH
Confidence 3455555555 35556555555 3667777777777655432222 2234566777777776665432 222 2466677
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCH 355 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 355 (381)
+|...++.-. .+..++. ++.|+.++++. ++++.-.+..... .|+|++|+++|..
T Consensus 434 tL~ahsN~l~---~fPe~~~-l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHSNQLL---SFPELAQ-LPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhcCCcee---echhhhh-cCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCCc
Confidence 7666553211 1223333 67788888876 4566665555544 3788888888754
No 32
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=4.3e-07 Score=70.01 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=70.7
Q ss_pred CCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccc
Q 016845 294 LELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYAS 373 (381)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~ 373 (381)
++.++-+++ .+...++..+.. ++.++.|.+.+|.++.|.++..+....|+|+.|+|++|+.||+.+++.+.+ .++|+
T Consensus 103 IeaVDAsds-~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR 179 (221)
T ss_pred EEEEecCCc-hHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence 456666663 467788887765 899999999999999999999999988999999999999999999999985 59999
Q ss_pred eeEcc
Q 016845 374 FCRLN 378 (381)
Q Consensus 374 ~l~l~ 378 (381)
.|.|.
T Consensus 180 ~L~l~ 184 (221)
T KOG3864|consen 180 RLHLY 184 (221)
T ss_pred HHHhc
Confidence 88764
No 33
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.32 E-value=1.9e-08 Score=90.22 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=85.5
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCCh--HHHHHHHhh
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTD--TGLVDLAHG 213 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~ 213 (381)
.+.+|++|.+... .+ ..+..-+..+|.|+.+.+..+.+...+++.-.-.+..|..|+|+.+. +.. ..+..
T Consensus 53 ~lqkLEHLs~~HN-~L--~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~---- 124 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHN-QL--ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEY---- 124 (1255)
T ss_pred HHhhhhhhhhhhh-hh--HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhh----
Confidence 3677888877642 21 12222234678899999988887776665544567888899988765 221 11211
Q ss_pred cCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCC
Q 016845 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLS 293 (381)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 293 (381)
.+++-.|++++. ++.... ..+..++..|-.|+++.|.+.. +..-...+.+|++|.++++.+....+..+. .+.+
T Consensus 125 -AKn~iVLNLS~N-~IetIP-n~lfinLtDLLfLDLS~NrLe~--LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smts 198 (1255)
T KOG0444|consen 125 -AKNSIVLNLSYN-NIETIP-NSLFINLTDLLFLDLSNNRLEM--LPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTS 198 (1255)
T ss_pred -hcCcEEEEcccC-ccccCC-chHHHhhHhHhhhccccchhhh--cCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchh
Confidence 257778888873 332221 1223355666677777665432 222223445667777766665544443332 3445
Q ss_pred CCeEeccC
Q 016845 294 LELLALYS 301 (381)
Q Consensus 294 L~~L~l~~ 301 (381)
|+.|++++
T Consensus 199 L~vLhms~ 206 (1255)
T KOG0444|consen 199 LSVLHMSN 206 (1255)
T ss_pred hhhhhccc
Confidence 55555554
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.23 E-value=6.4e-07 Score=85.32 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=13.2
Q ss_pred cCCCCCEEeccCCCCCChHHHHHH
Q 016845 342 GCKELTHLEINGCHNIGTMGLESI 365 (381)
Q Consensus 342 ~~~~L~~L~l~~c~~~~~~~~~~l 365 (381)
.+++|+.|+++++ .++...+..+
T Consensus 443 ~L~~L~~LdLs~N-~Ls~~~~~~L 465 (788)
T PRK15387 443 HLSSETTVNLEGN-PLSERTLQAL 465 (788)
T ss_pred hccCCCeEECCCC-CCCchHHHHH
Confidence 4667777777763 4555444433
No 35
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.23 E-value=1.6e-05 Score=64.48 Aligned_cols=165 Identities=19% Similarity=0.120 Sum_probs=93.6
Q ss_pred HhCCCCCEEEeeccccChhH---HHHHHhhCCCCCeEeccCCCCCChHHHHHHH-------h----hcCcCccEEeccCC
Q 016845 161 QKCIHLKSLDLQGCYVGDQG---LAAVGKVCNQLEDLNLRFCEGLTDTGLVDLA-------H----GCGKSLKSLGIAAC 226 (381)
Q Consensus 161 ~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~----~~~~~L~~L~l~~~ 226 (381)
.+||.|+..+|+.+.++... +..+.....+|++|.+.+|. +.+.+=..+. . ...|.|+.......
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 36777777777777655432 33334455677777777654 3322111111 0 11256766665542
Q ss_pred CCCCHH---HHHHHHhcCCCCCEEEcccCCCChhHHHHHH----hcCCCCcEEEeecccCCHHHHH---HHHhcCCCCCe
Q 016845 227 VKITDV---SLEAVGSHCKSLETLSLDSEFIHNKGVHAVA----QGCPLLRVLKLQCINVTDEALV---AVGNQCLSLEL 296 (381)
Q Consensus 227 ~~~~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~l~---~l~~~~~~L~~ 296 (381)
.+.+. -.....+.-.+|+.+.+..|.+.++++..+. .++++|+.|++..|.++..+.. .....++.|+.
T Consensus 168 -Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 168 -RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred -hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 22222 2222333335788888888888877665443 3567888888887777654332 23345677888
Q ss_pred EeccCCCCCCHHHHHHHHh-----cCCCCCEEeccCC
Q 016845 297 LALYSFQQFTDKGLHAVGK-----GCKKLKNLTLSDC 328 (381)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~-----~~~~L~~L~l~~~ 328 (381)
|.+.+|- ++..+...+.+ ..|+|..|...++
T Consensus 247 L~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 247 LRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred ccccchh-hccccHHHHHHHhhhhcCCCccccccchh
Confidence 8888875 44444443332 2577777776654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.10 E-value=1e-06 Score=72.25 Aligned_cols=211 Identities=18% Similarity=0.134 Sum_probs=114.9
Q ss_pred HHHHHHhcCCCccEEecCCCC------CCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCC
Q 016845 129 GLNALADGFSKLEKLSLIWCS------NISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGL 202 (381)
Q Consensus 129 ~l~~l~~~~~~L~~L~l~~~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 202 (381)
.+..+...|.+|+.|.+++.. ++-+..+..-+..+.+|+.+.++.|.-. .+..+...-|.|+.+...+...-
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~--~i~~~~~~kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE--NIVDIELLKPTLQTICVHNTTIQ 250 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh--heeceeecCchhheeeeeccccc
Confidence 366777778888888887642 1222223333445788888888877521 22222222356666655433200
Q ss_pred ChH--------------------HHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHH
Q 016845 203 TDT--------------------GLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAV 262 (381)
Q Consensus 203 ~~~--------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 262 (381)
... +.........+.|+++++++. .++..+ +. .+-.|.++.|+++.|.+...+-
T Consensus 251 ~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iD-ES-vKL~Pkir~L~lS~N~i~~v~n--- 324 (490)
T KOG1259|consen 251 DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQID-ES-VKLAPKLRRLILSQNRIRTVQN--- 324 (490)
T ss_pred ccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhh-hh-hhhccceeEEeccccceeeehh---
Confidence 000 000000011246777777773 332221 11 2346888999988887654322
Q ss_pred HhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCH-HHHHHHHh
Q 016845 263 AQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSD-MGLEAIAT 341 (381)
Q Consensus 263 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~-~~l~~l~~ 341 (381)
.+.+++|..|++++|.++. +........++++|.+.++..-+-.++.. +-+|.+|+++++ +|.+ +.+..+ .
T Consensus 325 La~L~~L~~LDLS~N~Ls~--~~Gwh~KLGNIKtL~La~N~iE~LSGL~K----LYSLvnLDl~~N-~Ie~ldeV~~I-G 396 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLAE--CVGWHLKLGNIKTLKLAQNKIETLSGLRK----LYSLVNLDLSSN-QIEELDEVNHI-G 396 (490)
T ss_pred hhhcccceEeecccchhHh--hhhhHhhhcCEeeeehhhhhHhhhhhhHh----hhhheecccccc-chhhHHHhccc-c
Confidence 3447888899988776654 22233356788888887743211122222 445788888875 3433 223333 3
Q ss_pred cCCCCCEEeccCCC
Q 016845 342 GCKELTHLEINGCH 355 (381)
Q Consensus 342 ~~~~L~~L~l~~c~ 355 (381)
++|.|+.+.+.+.|
T Consensus 397 ~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 397 NLPCLETLRLTGNP 410 (490)
T ss_pred cccHHHHHhhcCCC
Confidence 57888888887754
No 37
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.10 E-value=4.6e-07 Score=84.92 Aligned_cols=127 Identities=18% Similarity=0.180 Sum_probs=76.4
Q ss_pred CCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCE
Q 016845 243 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKN 322 (381)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 322 (381)
.|+.|.+.+|.+++..+.. +.+.++|+.|+++.|.+..-....+ .+++.|++|.++|+. ++.-. ..+ ..++.|+.
T Consensus 360 ~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~-~kle~LeeL~LSGNk-L~~Lp-~tv-a~~~~L~t 434 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKL-RKLEELEELNLSGNK-LTTLP-DTV-ANLGRLHT 434 (1081)
T ss_pred HHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHH-hchHHhHHHhcccch-hhhhh-HHH-HhhhhhHH
Confidence 3555666666666654443 3456778888887664432211122 245677888887743 32211 122 23667777
Q ss_pred EeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 323 LTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 323 L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
|...++ .+.. +.++.. +|.|+.++++. ++++...+...... |+|++|++.-|
T Consensus 435 L~ahsN-~l~~--fPe~~~-l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 435 LRAHSN-QLLS--FPELAQ-LPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred HhhcCC-ceee--chhhhh-cCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCC
Confidence 776653 2322 224433 89999999984 78887777766654 89999988644
No 38
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.90 E-value=7.2e-06 Score=78.34 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=16.5
Q ss_pred CCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCC
Q 016845 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 200 (381)
++|+.|++++|.++. ++ ...++|+.|+++++.
T Consensus 282 ~~L~~L~Ls~N~Lt~--LP---~~p~~L~~LdLS~N~ 313 (788)
T PRK15387 282 SGLCKLWIFGNQLTS--LP---VLPPGLQELSVSDNQ 313 (788)
T ss_pred hhcCEEECcCCcccc--cc---ccccccceeECCCCc
Confidence 345566666555442 11 123567777776543
No 39
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.67 E-value=3.2e-05 Score=74.29 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=5.9
Q ss_pred CCCCEEeccCC
Q 016845 318 KKLKNLTLSDC 328 (381)
Q Consensus 318 ~~L~~L~l~~~ 328 (381)
++|+.|++++|
T Consensus 367 ~~L~~LdLs~N 377 (754)
T PRK15370 367 PTITTLDVSRN 377 (754)
T ss_pred CCcCEEECCCC
Confidence 44555555554
No 40
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.59 E-value=9.4e-05 Score=37.37 Aligned_cols=25 Identities=40% Similarity=0.917 Sum_probs=17.0
Q ss_pred CCCCCEEeccCCCCCChHHHHHHHh
Q 016845 343 CKELTHLEINGCHNIGTMGLESIGK 367 (381)
Q Consensus 343 ~~~L~~L~l~~c~~~~~~~~~~l~~ 367 (381)
||+|+.|+|++|+++++.++..+.+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5667777777777777777666653
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.58 E-value=3.6e-05 Score=75.15 Aligned_cols=108 Identities=22% Similarity=0.154 Sum_probs=55.0
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCC--hHHHHHHHhh
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLT--DTGLVDLAHG 213 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~ 213 (381)
.+++|++|-+.....--...-..++..+|.|+.|||++|.-... ++.....+-+|+.|+++++. +. +.++..+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~L--- 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTG-ISHLPSGLGNL--- 617 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCC-ccccchHHHHH---
Confidence 35667777665431101111122344677788888877543222 22222335567777777654 33 2233332
Q ss_pred cCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccC
Q 016845 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSE 252 (381)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 252 (381)
..|.+|++......... ..+...+++|++|.+...
T Consensus 618 --k~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 618 --KKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRS 652 (889)
T ss_pred --Hhhheeccccccccccc--cchhhhcccccEEEeecc
Confidence 56777777654322211 223334677777777653
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.50 E-value=3.1e-05 Score=63.79 Aligned_cols=205 Identities=18% Similarity=0.208 Sum_probs=108.2
Q ss_pred HHHHHHHHhCCCCCEEEeeccc--cCh-----hHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCC
Q 016845 154 LGLMSLAQKCIHLKSLDLQGCY--VGD-----QGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAAC 226 (381)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~~~--~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 226 (381)
..+..++..|.+|+.|.+++.. ++. .-+..-...+.+|+.+.++.|+.- .+..+... .|.|+++.+...
T Consensus 172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~---~i~~~~~~-kptl~t~~v~~s 247 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE---NIVDIELL-KPTLQTICVHNT 247 (490)
T ss_pred cchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh---heeceeec-Cchhheeeeecc
Confidence 3456666778899999998764 221 112222334678888888877521 11111111 277888776552
Q ss_pred CCCCHH-------HH---------------HHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHH
Q 016845 227 VKITDV-------SL---------------EAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEAL 284 (381)
Q Consensus 227 ~~~~~~-------~~---------------~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l 284 (381)
. +++. .. ...+.....|+++++++|.++. +....+-.|.++.|.++.|.+...
T Consensus 248 ~-~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v-- 322 (490)
T KOG1259|consen 248 T-IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTV-- 322 (490)
T ss_pred c-ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh--hhhhhhhccceeEEeccccceeee--
Confidence 1 1110 00 0001123356777777766543 223334467888888876666432
Q ss_pred HHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCh-HHHH
Q 016845 285 VAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGT-MGLE 363 (381)
Q Consensus 285 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~-~~~~ 363 (381)
..+. ..++|+.|+++++. ++ .+.-.-..+-|++.|.++++. +. ++.-+ ..+-+|..|++++ +++.. +.+.
T Consensus 323 ~nLa-~L~~L~~LDLS~N~-Ls--~~~Gwh~KLGNIKtL~La~N~-iE--~LSGL-~KLYSLvnLDl~~-N~Ie~ldeV~ 393 (490)
T KOG1259|consen 323 QNLA-ELPQLQLLDLSGNL-LA--ECVGWHLKLGNIKTLKLAQNK-IE--TLSGL-RKLYSLVNLDLSS-NQIEELDEVN 393 (490)
T ss_pred hhhh-hcccceEeecccch-hH--hhhhhHhhhcCEeeeehhhhh-Hh--hhhhh-Hhhhhheeccccc-cchhhHHHhc
Confidence 2222 46778888887742 21 111122235677778887743 21 12222 2245788888887 34433 3444
Q ss_pred HHHhcCCccceeEc
Q 016845 364 SIGKFCRYASFCRL 377 (381)
Q Consensus 364 ~l~~~~~~L~~l~l 377 (381)
.+. ..|-|+++.+
T Consensus 394 ~IG-~LPCLE~l~L 406 (490)
T KOG1259|consen 394 HIG-NLPCLETLRL 406 (490)
T ss_pred ccc-cccHHHHHhh
Confidence 444 4566666544
No 43
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.50 E-value=7.6e-05 Score=71.76 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=63.1
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (381)
++|+.|.+++|.++.-. .. -.++|+.|+++.+.+.. +... -.++|+.|+++++. ++.- ...+ .+.|+
T Consensus 325 ~sL~~L~Ls~N~Lt~LP--~~--l~~sL~~L~Ls~N~L~~--LP~~--lp~~L~~LdLs~N~-Lt~L-P~~l---~~sL~ 391 (754)
T PRK15370 325 PGLKTLEAGENALTSLP--AS--LPPELQVLDVSKNQITV--LPET--LPPTITTLDVSRNA-LTNL-PENL---PAALQ 391 (754)
T ss_pred ccceeccccCCccccCC--hh--hcCcccEEECCCCCCCc--CChh--hcCCcCEEECCCCc-CCCC-CHhH---HHHHH
Confidence 56778888777654311 11 13678888888776652 1111 13678999998864 3311 0111 13577
Q ss_pred EEeccCCCCCCH--HHHHHHHhcCCCCCEEeccCCCCCChHHHHHH
Q 016845 322 NLTLSDCYFLSD--MGLEAIATGCKELTHLEINGCHNIGTMGLESI 365 (381)
Q Consensus 322 ~L~l~~~~~i~~--~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l 365 (381)
.|+++++. ++. ..+..+...++++..|++.+ +.++...++.+
T Consensus 392 ~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~-Npls~~tl~~L 435 (754)
T PRK15370 392 IMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEY-NPFSERTIQNM 435 (754)
T ss_pred HHhhccCC-cccCchhHHHHhhcCCCccEEEeeC-CCccHHHHHHH
Confidence 78888753 432 33445555568888888887 44555555443
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.46 E-value=3.6e-05 Score=75.17 Aligned_cols=209 Identities=21% Similarity=0.185 Sum_probs=107.1
Q ss_pred HhcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhh
Q 016845 134 ADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHG 213 (381)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 213 (381)
+..+|.|+.|+++++. .-..++...+.+-+|++|+++++.+.. ++.-...+..|.+|++..+...... ......
T Consensus 567 f~~m~~LrVLDLs~~~--~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~ 640 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNS--SLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVTGRLESI--PGILLE 640 (889)
T ss_pred HhhCcceEEEECCCCC--ccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhheeccccccccccc--cchhhh
Confidence 4568999999999753 333566667778899999999998762 3333344678999999876532221 222222
Q ss_pred cCcCccEEeccCCC-CCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcE----EEeecccCCHHHHHHHH
Q 016845 214 CGKSLKSLGIAACV-KITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRV----LKLQCINVTDEALVAVG 288 (381)
Q Consensus 214 ~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~----L~l~~~~~~~~~l~~l~ 288 (381)
.++|+.|.+.... ..+...+..+ ..+.+|+.+....... ..+..+ ...++|.. +.+.+ ..........
T Consensus 641 -L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s~--~~~e~l-~~~~~L~~~~~~l~~~~--~~~~~~~~~~ 713 (889)
T KOG4658|consen 641 -LQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISSV--LLLEDL-LGMTRLRSLLQSLSIEG--CSKRTLISSL 713 (889)
T ss_pred -cccccEEEeeccccccchhhHHhh-hcccchhhheeecchh--HhHhhh-hhhHHHHHHhHhhhhcc--cccceeeccc
Confidence 2789999987753 2222223333 4556666666543221 011111 11222222 22111 1111111112
Q ss_pred hcCCCCCeEeccCCCCCCHHH--H--HHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 016845 289 NQCLSLELLALYSFQQFTDKG--L--HAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIG 358 (381)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~--~--~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~ 358 (381)
...++|+.|.+.+|....... . ......++++..+.+.+|....+-....+ -|+|+.|.+.+|..+.
T Consensus 714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f---~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF---APHLTSLSLVSCRLLE 784 (889)
T ss_pred ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc---cCcccEEEEecccccc
Confidence 245677888887765421110 0 00000244555555555554444333222 4667777776665543
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.23 E-value=2.5e-05 Score=71.93 Aligned_cols=203 Identities=23% Similarity=0.262 Sum_probs=103.7
Q ss_pred HHHHHhcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccCh-hHHHHHHhhCCCCCeEeccCCCCCChHHHH
Q 016845 130 LNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGD-QGLAAVGKVCNQLEDLNLRFCEGLTDTGLV 208 (381)
Q Consensus 130 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 208 (381)
+..+.+..++++.|.+.....-.+.+...++ -|.+|+.|.|.+|.+.. .++..+- ..|++|--.+ +-..+.
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~if-pF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~----Sl~Al~ 147 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIF-PFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHN----SLDALR 147 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceec-cccceeeEEecCcchhhhhhhHHHH---Hhhhhhhhhc----cHHHHH
Confidence 4455555667777766543322222222222 57899999999998754 2233222 3455544221 122233
Q ss_pred HHHhhcC---------cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccC
Q 016845 209 DLAHGCG---------KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (381)
Q Consensus 209 ~~~~~~~---------~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (381)
.++..|. ..|...+.++ +.+.. +..-.+-+|.|+.|+++.|.+.+.. ....+++|++|+++.|.+
T Consensus 148 ~v~ascggd~~ns~~Wn~L~~a~fsy-N~L~~--mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 148 HVFASCGGDISNSPVWNKLATASFSY-NRLVL--MDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred HHHHHhccccccchhhhhHhhhhcch-hhHHh--HHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchh
Confidence 3333221 1122222222 11111 1111234678888998888776533 345688899999886655
Q ss_pred CHHH-HHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 016845 280 TDEA-LVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGC 354 (381)
Q Consensus 280 ~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c 354 (381)
.... +... .| .|..|.+.++.-- .+..+. ++.+|+.|+++++- +.+..=...+..+..|+.|.|.|.
T Consensus 222 ~~vp~l~~~--gc-~L~~L~lrnN~l~---tL~gie-~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 222 RHVPQLSMV--GC-KLQLLNLRNNALT---TLRGIE-NLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ccccccchh--hh-hheeeeecccHHH---hhhhHH-hhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCC
Confidence 4311 1111 23 3778888764321 222222 36778888888753 333222222234667788888874
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.15 E-value=0.00017 Score=60.26 Aligned_cols=50 Identities=30% Similarity=0.443 Sum_probs=43.9
Q ss_pred CccccccCCC----HHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhcccceeeecc
Q 016845 3 GHDRINTCLP----DEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGA 54 (381)
Q Consensus 3 ~~~~i~~~LP----~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~ 54 (381)
..|+|. .|| ++|-+.||+||+ ..+++.|-+|||+|+.+......|..+..
T Consensus 71 qrDFi~-~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l~dg~~WKkLie 124 (499)
T KOG0281|consen 71 QRDFIT-ALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVLSDGMLWKKLIE 124 (499)
T ss_pred HHHHHH-hcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 357888 999 999999999999 58999999999999999888877766544
No 47
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.15 E-value=0.00062 Score=34.32 Aligned_cols=24 Identities=46% Similarity=0.875 Sum_probs=16.6
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHH
Q 016845 317 CKKLKNLTLSDCYFLSDMGLEAIA 340 (381)
Q Consensus 317 ~~~L~~L~l~~~~~i~~~~l~~l~ 340 (381)
|++|++|++++|.+++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 466777777777777777776654
No 48
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.07 E-value=0.00037 Score=57.70 Aligned_cols=42 Identities=40% Similarity=0.563 Sum_probs=36.2
Q ss_pred cCCCHHHHHHHHh-----cCCChhhhhhHHHhhhhHHHhhhcccceee
Q 016845 9 TCLPDEVILEIFR-----HLDSKASRDACSLVCRRWLTLERLSRTTLR 51 (381)
Q Consensus 9 ~~LP~eil~~If~-----~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~ 51 (381)
..||||||..||. .++ .+++.+++.|||.|+..++.+..|..
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d-~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLD-LRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcc-hhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 3899999999996 556 48999999999999999998876653
No 49
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.03 E-value=0.00038 Score=63.43 Aligned_cols=95 Identities=28% Similarity=0.354 Sum_probs=40.5
Q ss_pred CCCEEEcccCCCChhHHHHHHh---cCCC-CcEEEeecccCCHHHHHHHHhcC----CCCCeEeccCCCCCCHHHHH---
Q 016845 243 SLETLSLDSEFIHNKGVHAVAQ---GCPL-LRVLKLQCINVTDEALVAVGNQC----LSLELLALYSFQQFTDKGLH--- 311 (381)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~---~~~~-L~~L~l~~~~~~~~~l~~l~~~~----~~L~~L~l~~~~~~~~~~~~--- 311 (381)
++++|.+.++.++......+.. ..++ +..|++.++.+.+..+..+.+.+ +.++++++..+. +++.+..
T Consensus 205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~ 283 (478)
T KOG4308|consen 205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLA 283 (478)
T ss_pred cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHH
Confidence 4555555555554433332222 2222 33455555555554444443322 233555555533 3333222
Q ss_pred HHHhcCCCCCEEeccCCCCCCHHHHHHH
Q 016845 312 AVGKGCKKLKNLTLSDCYFLSDMGLEAI 339 (381)
Q Consensus 312 ~l~~~~~~L~~L~l~~~~~i~~~~l~~l 339 (381)
.....++.++.+.+.+. .+++.+...+
T Consensus 284 ~~l~~~~~l~~l~l~~n-~l~~~~~~~~ 310 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNN-PLTDYGVELL 310 (478)
T ss_pred HHHhhhHHHHHhhcccC-ccccHHHHHH
Confidence 22223445555555553 2444444433
No 50
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.80 E-value=0.00026 Score=60.75 Aligned_cols=64 Identities=22% Similarity=0.188 Sum_probs=32.4
Q ss_pred cCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 016845 290 QCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIG 358 (381)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~ 358 (381)
..|+|++|+++++ .++...-.. +.+...+++|.+..+ .+. ..-..+++++..|+.|++.+ ++++
T Consensus 272 ~L~~L~~lnlsnN-~i~~i~~~a-Fe~~a~l~eL~L~~N-~l~-~v~~~~f~~ls~L~tL~L~~-N~it 335 (498)
T KOG4237|consen 272 KLPNLRKLNLSNN-KITRIEDGA-FEGAAELQELYLTRN-KLE-FVSSGMFQGLSGLKTLSLYD-NQIT 335 (498)
T ss_pred hcccceEeccCCC-ccchhhhhh-hcchhhhhhhhcCcc-hHH-HHHHHhhhccccceeeeecC-CeeE
Confidence 4567777777663 333221111 123455666666553 222 11223445667777777776 3443
No 51
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.79 E-value=0.00052 Score=62.58 Aligned_cols=123 Identities=23% Similarity=0.310 Sum_probs=78.3
Q ss_pred CCCCCEEEcccCCCChhHHHHHHh-------cCCCCcEEEeecccCCHHHHHHHH---hcCCC-CCeEeccCCCCCCHHH
Q 016845 241 CKSLETLSLDSEFIHNKGVHAVAQ-------GCPLLRVLKLQCINVTDEALVAVG---NQCLS-LELLALYSFQQFTDKG 309 (381)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~l~~l~---~~~~~-L~~L~l~~~~~~~~~~ 309 (381)
.+.++.++++.|.+...+...+.+ ...++++|.+..+.++......+. ...+. +..|++.. ..+.|.+
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g 249 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-NKLGDVG 249 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-cCcchHH
Confidence 566777777766665544433332 244688899987776655443333 23344 56678866 4577777
Q ss_pred HHHHHhcC----CCCCEEeccCCCCCCHHHHH---HHHhcCCCCCEEeccCCCCCChHHHHHHH
Q 016845 310 LHAVGKGC----KKLKNLTLSDCYFLSDMGLE---AIATGCKELTHLEINGCHNIGTMGLESIG 366 (381)
Q Consensus 310 ~~~l~~~~----~~L~~L~l~~~~~i~~~~l~---~l~~~~~~L~~L~l~~c~~~~~~~~~~l~ 366 (381)
+..+...+ +.++.++++.|. +++.+.. .....|++++.+.+.+ +.+++.++..+.
T Consensus 250 ~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~-n~l~~~~~~~~~ 311 (478)
T KOG4308|consen 250 VEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSN-NPLTDYGVELLL 311 (478)
T ss_pred HHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhccc-CccccHHHHHHH
Confidence 77666543 456899999875 6654444 4445688999999987 566776655544
No 52
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.00056 Score=56.01 Aligned_cols=115 Identities=24% Similarity=0.247 Sum_probs=65.0
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCH-HHHHHHHhcCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTD-EALVAVGNQCLSL 294 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~l~~l~~~~~~L 294 (381)
.+.+.|+..+| .+++.. +...||.|+.|.++-|.++. +.. +..|++|++|.+.-|.+.+ +.+..+. +.|+|
T Consensus 19 ~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvNkIss--L~p-l~rCtrLkElYLRkN~I~sldEL~YLk-nlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVNKISS--LAP-LQRCTRLKELYLRKNCIESLDELEYLK-NLPSL 90 (388)
T ss_pred HHhhhhcccCC-CccHHH---HHHhcccceeEEeecccccc--chh-HHHHHHHHHHHHHhcccccHHHHHHHh-cCchh
Confidence 46677777776 444433 33567788888777666543 222 3447777777776555544 2333333 66777
Q ss_pred CeEeccCCCCCCHHH---HHHHHhcCCCCCEEeccCCCCCCHHHHHHHHh
Q 016845 295 ELLALYSFQQFTDKG---LHAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT 341 (381)
Q Consensus 295 ~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 341 (381)
+.|-|..+.-....+ =..+.+.+|+|+.|+=- .++.+.++..++
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv---~VteeEle~ALr 137 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV---PVTEEELEEALR 137 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccCc---cccHHHHHHHHh
Confidence 777776543322211 12344557777777533 266666665544
No 53
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.69 E-value=0.0014 Score=57.05 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhc
Q 016845 10 CLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERL 45 (381)
Q Consensus 10 ~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 45 (381)
+||+|+|..|..+|+..-|+++++.||+.||.++..
T Consensus 6 ~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 6 TLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 599999999999997678999999999999998654
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.00021 Score=57.84 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=27.7
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEee
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQ 275 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 275 (381)
|+|+.|.++........++..++..+|+|++|++++|.+.+..-..-.+.+++|..|+++
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF 124 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence 455555555532222333444444556666666666655431111112234455555554
No 55
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.61 E-value=0.00017 Score=45.51 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=6.2
Q ss_pred cCCCCCEEEcccCC
Q 016845 240 HCKSLETLSLDSEF 253 (381)
Q Consensus 240 ~~~~L~~L~l~~~~ 253 (381)
.+++|++|++++|.
T Consensus 23 ~l~~L~~L~l~~N~ 36 (61)
T PF13855_consen 23 NLPNLETLDLSNNN 36 (61)
T ss_dssp TGTTESEEEETSSS
T ss_pred CCCCCCEeEccCCc
Confidence 34444444444443
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.60 E-value=0.00061 Score=63.26 Aligned_cols=176 Identities=24% Similarity=0.233 Sum_probs=82.3
Q ss_pred HHHHHHhCCCCCEEEeeccccChhH-HHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHH
Q 016845 156 LMSLAQKCIHLKSLDLQGCYVGDQG-LAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSL 234 (381)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 234 (381)
+..+..-+++++.|.+-...-.+.. .-.+. .+..|++|.+.+|+.-...++..+- ..|++|-=.. +-..+
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~if-pF~sLr~LElrg~~L~~~~GL~~lr----~qLe~LIC~~----Sl~Al 146 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIF-PFRSLRVLELRGCDLSTAKGLQELR----HQLEKLICHN----SLDAL 146 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceec-cccceeeEEecCcchhhhhhhHHHH----Hhhhhhhhhc----cHHHH
Confidence 3444445566666666544322211 22222 3567888888877733333433332 2333332111 11122
Q ss_pred HHHHhcC----------CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCC
Q 016845 235 EAVGSHC----------KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQ 304 (381)
Q Consensus 235 ~~l~~~~----------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 304 (381)
..+...| -.|.+.+.++|.+.- +....+-+|.|++|+++.|.+.+.. .+ ..|+.|++|+++++.
T Consensus 147 ~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~~v~--~L-r~l~~LkhLDlsyN~- 220 (1096)
T KOG1859|consen 147 RHVFASCGGDISNSPVWNKLATASFSYNRLVL--MDESLQLLPALESLNLSHNKFTKVD--NL-RRLPKLKHLDLSYNC- 220 (1096)
T ss_pred HHHHHHhccccccchhhhhHhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhhhhH--HH-Hhcccccccccccch-
Confidence 2222111 123333444443321 1122233567778888777776543 33 257778888877632
Q ss_pred CCHHHHHHHH-hcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccC
Q 016845 305 FTDKGLHAVG-KGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEING 353 (381)
Q Consensus 305 ~~~~~~~~l~-~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 353 (381)
+.. +..+. .+|. |+.|.++++. ++ .+..+ .++.+|+.|++++
T Consensus 221 L~~--vp~l~~~gc~-L~~L~lrnN~-l~--tL~gi-e~LksL~~LDlsy 263 (1096)
T KOG1859|consen 221 LRH--VPQLSMVGCK-LQLLNLRNNA-LT--TLRGI-ENLKSLYGLDLSY 263 (1096)
T ss_pred hcc--ccccchhhhh-heeeeecccH-HH--hhhhH-HhhhhhhccchhH
Confidence 211 11111 1233 7777777753 22 23333 3467777777776
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.50 E-value=0.0074 Score=53.40 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=6.6
Q ss_pred CCCccEEecCCC
Q 016845 137 FSKLEKLSLIWC 148 (381)
Q Consensus 137 ~~~L~~L~l~~~ 148 (381)
|++++.|++++|
T Consensus 51 ~~~l~~L~Is~c 62 (426)
T PRK15386 51 ARASGRLYIKDC 62 (426)
T ss_pred hcCCCEEEeCCC
Confidence 455555555554
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.24 E-value=0.00057 Score=43.09 Aligned_cols=59 Identities=24% Similarity=0.166 Sum_probs=29.8
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCC
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSF 302 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 302 (381)
|+|++|++++|.+..-. ...+.++++|+.|+++++.+..-.... ...+++|++|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP-PDSFSNLPNLETLDLSNNNLTSIPPDA-FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEEC-TTTTTTGTTESEEEETSSSESEEETTT-TTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccC-HHHHcCCCCCCEeEccCCccCccCHHH-HcCCCCCCEEeCcCC
Confidence 45666666665544321 122345566666666655554211111 224566666666654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.13 E-value=0.0017 Score=50.65 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=38.5
Q ss_pred CCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCCh--HHHHHHHhhcCcCccEEeccCCCCCCHH-HHHHHHh
Q 016845 163 CIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTD--TGLVDLAHGCGKSLKSLGIAACVKITDV-SLEAVGS 239 (381)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~ 239 (381)
..+...++|+++.+... .....++.|.+|.+.++. ++. ..+..+ .|+|+.|.+.+. ++... .+..+ .
T Consensus 41 ~d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNr-It~I~p~L~~~----~p~l~~L~LtnN-si~~l~dl~pL-a 110 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNR-ITRIDPDLDTF----LPNLKTLILTNN-SIQELGDLDPL-A 110 (233)
T ss_pred ccccceecccccchhhc---ccCCCccccceEEecCCc-ceeeccchhhh----ccccceEEecCc-chhhhhhcchh-c
Confidence 35566667766654321 112245667777776554 221 122222 256666666552 22221 12222 2
Q ss_pred cCCCCCEEEcccCCC
Q 016845 240 HCKSLETLSLDSEFI 254 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~ 254 (381)
.||.|++|.+-+|.+
T Consensus 111 ~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPV 125 (233)
T ss_pred cCCccceeeecCCch
Confidence 555666666555544
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.10 E-value=0.0081 Score=34.73 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=13.3
Q ss_pred CCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccC
Q 016845 243 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (381)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (381)
+|++|+++++.+.+ +...+..+++|+.|+++.+.+
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCC
Confidence 34444444444432 112223344444444444333
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.0033 Score=51.67 Aligned_cols=113 Identities=18% Similarity=0.245 Sum_probs=67.5
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcC
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 217 (381)
.+.++|+..+| ++++.. +...+|.|+.|.|+-|.|+. +..+ ..|++|++|.|..+. +.+..-...+++. |+
T Consensus 19 ~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvNkIss--L~pl-~rCtrLkElYLRkN~-I~sldEL~YLknl-ps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVNKISS--LAPL-QRCTRLKELYLRKNC-IESLDELEYLKNL-PS 89 (388)
T ss_pred HHhhhhcccCC-CccHHH---HHHhcccceeEEeecccccc--chhH-HHHHHHHHHHHHhcc-cccHHHHHHHhcC-ch
Confidence 46777888877 566543 44578999999999888764 3333 357888888887655 4443333444444 67
Q ss_pred ccEEeccCCCCCCHHH---HHHHHhcCCCCCEEEcccCCCChhHHHH
Q 016845 218 LKSLGIAACVKITDVS---LEAVGSHCKSLETLSLDSEFIHNKGVHA 261 (381)
Q Consensus 218 L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 261 (381)
|+.|=+...++....+ -..+...+|+|+.|+ +..++.+.+..
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle~ 134 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELEE 134 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHHH
Confidence 7777776544332221 122334567777765 23344444443
No 62
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.81 E-value=0.0013 Score=56.65 Aligned_cols=236 Identities=22% Similarity=0.127 Sum_probs=111.2
Q ss_pred HHHHHHhcCC-CccEEecCCC--CCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChH
Q 016845 129 GLNALADGFS-KLEKLSLIWC--SNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDT 205 (381)
Q Consensus 129 ~l~~l~~~~~-~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 205 (381)
++..+....| .-.++.+... ..+++.. ++.+++|+.|+|++|.|+.-....+ ..+++|..|-+.+...+++.
T Consensus 57 GL~eVP~~LP~~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF-~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 57 GLTEVPANLPPETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAF-KGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CcccCcccCCCcceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhh-hhhHhhhHHHhhcCCchhhh
Confidence 3444433343 5566666543 1233332 3467899999999998664333222 34566777777664445543
Q ss_pred HHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeeccc-CCHHHH
Q 016845 206 GLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN-VTDEAL 284 (381)
Q Consensus 206 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~l 284 (381)
.-..+ .+. .+++.|.+.-+ ++.-. .......+++|..|.+..+.+.... ...+.....++.+++.-+. +.+..+
T Consensus 132 ~k~~F-~gL-~slqrLllNan-~i~Ci-r~~al~dL~~l~lLslyDn~~q~i~-~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 132 PKGAF-GGL-SSLQRLLLNAN-HINCI-RQDALRDLPSLSLLSLYDNKIQSIC-KGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred hhhHh-hhH-HHHHHHhcChh-hhcch-hHHHHHHhhhcchhcccchhhhhhc-cccccchhccchHhhhcCcccccccc
Confidence 21111 111 34555555432 12111 1223357888888888765432110 1122334556666663222 111100
Q ss_pred HHHHh----------c--C--------------------CCCCeE--eccCCCCCCHHHHHHHHhcCCCCCEEeccCCCC
Q 016845 285 VAVGN----------Q--C--------------------LSLELL--ALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYF 330 (381)
Q Consensus 285 ~~l~~----------~--~--------------------~~L~~L--~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 330 (381)
..+.. . | -.++.+ .+.+........-..-.+.+++|+.|+++++ .
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~ 285 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-K 285 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-c
Confidence 00000 0 0 001111 1111111111111222445788888888885 3
Q ss_pred CCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcc
Q 016845 331 LSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLN 378 (381)
Q Consensus 331 i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~ 378 (381)
++.-.-. -+++...+++|.+.. +++.. .-..+.++...|+.|+|.
T Consensus 286 i~~i~~~-aFe~~a~l~eL~L~~-N~l~~-v~~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 286 ITRIEDG-AFEGAAELQELYLTR-NKLEF-VSSGMFQGLSGLKTLSLY 330 (498)
T ss_pred cchhhhh-hhcchhhhhhhhcCc-chHHH-HHHHhhhccccceeeeec
Confidence 5432222 224467788888876 33322 122344567788888765
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.62 E-value=0.018 Score=33.29 Aligned_cols=34 Identities=32% Similarity=0.309 Sum_probs=15.9
Q ss_pred CCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCC
Q 016845 165 HLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 200 (381)
+|++|+++++.+++ +......+++|+.|+++++.
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 45555555555543 22222345555555555543
No 64
>PLN03150 hypothetical protein; Provisional
Probab=95.55 E-value=0.034 Score=53.30 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=44.5
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|+++++ .+... +......+++|+.|++++|.+.... ...+..+++|+.|+++++.+....-..+.....++.
T Consensus 442 ~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 442 RHLQSINLSGN-SIRGN-IPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred CCCCEEECCCC-cccCc-CChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 57777777764 22221 1111246777777777777665322 223345677777777766654332222222223455
Q ss_pred eEeccCC
Q 016845 296 LLALYSF 302 (381)
Q Consensus 296 ~L~l~~~ 302 (381)
.+++.++
T Consensus 519 ~l~~~~N 525 (623)
T PLN03150 519 SFNFTDN 525 (623)
T ss_pred eEEecCC
Confidence 6666554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.54 E-value=0.0074 Score=49.15 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=8.9
Q ss_pred HHHHHhCCCCCEEEeecccc
Q 016845 157 MSLAQKCIHLKSLDLQGCYV 176 (381)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~ 176 (381)
..++..+|+|++|++++|.+
T Consensus 84 ~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 84 EVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred eehhhhCCceeEEeecCCcc
Confidence 33333444444444444443
No 66
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.48 E-value=0.00011 Score=55.39 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=16.2
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEecc
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLR 197 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 197 (381)
.+.+|+.|++.++++++. +.-...+|.|+.|++.
T Consensus 54 ~l~nlevln~~nnqie~l--p~~issl~klr~lnvg 87 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIEEL--PTSISSLPKLRILNVG 87 (264)
T ss_pred Hhhhhhhhhcccchhhhc--Chhhhhchhhhheecc
Confidence 345566666665555431 1112234555555554
No 67
>PLN03150 hypothetical protein; Provisional
Probab=95.39 E-value=0.039 Score=52.90 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=30.4
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCC
Q 016845 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSF 302 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 302 (381)
.+++|+.|++++|.+... +...+..+++|+.|+++.+.+....-..+. .+++|+.|+++++
T Consensus 440 ~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~Ls~N 500 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLNGN 500 (623)
T ss_pred CCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEECcCC
Confidence 556666666666554321 122234456666666665555432222222 4556666666553
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.94 E-value=0.04 Score=48.94 Aligned_cols=167 Identities=15% Similarity=0.217 Sum_probs=96.3
Q ss_pred HHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHh
Q 016845 160 AQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGS 239 (381)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 239 (381)
+..+++++.|++++|.+... + ...++|++|.+.+|..+... .. ..+++|+.|.+.+|..+. .
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL--P---~LP~sLtsL~Lsnc~nLtsL--P~---~LP~nLe~L~Ls~Cs~L~--------s 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL--P---VLPNELTEITIENCNNLTTL--PG---SIPEGLEKLTVCHCPEIS--------G 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc--C---CCCCCCcEEEccCCCCcccC--Cc---hhhhhhhheEccCccccc--------c
Confidence 34579999999999965532 2 22347999999988754321 11 113689999999885443 1
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHhcC-CCCcEEEeeccc-CCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHh-c
Q 016845 240 HCKSLETLSLDSEFIHNKGVHAVAQGC-PLLRVLKLQCIN-VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGK-G 316 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~ 316 (381)
-.++|+.|++.++.... + ..+ ++|+.|.+.... .....+... -.++|++|.+.+|..+. +.. -
T Consensus 110 LP~sLe~L~L~~n~~~~--L----~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~------LP~~L 175 (426)
T PRK15386 110 LPESVRSLEIKGSATDS--I----KNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII------LPEKL 175 (426)
T ss_pred cccccceEEeCCCCCcc--c----ccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc------Ccccc
Confidence 23568999987644322 1 123 468888874221 111111111 12689999999876442 111 1
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcC-CCCCEEeccCCCCCChHHH
Q 016845 317 CKKLKNLTLSDCYFLSDMGLEAIATGC-KELTHLEINGCHNIGTMGL 362 (381)
Q Consensus 317 ~~~L~~L~l~~~~~i~~~~l~~l~~~~-~~L~~L~l~~c~~~~~~~~ 362 (381)
..+|++|.++.+...+ +......+ +++ .|.+.+|..+..+.+
T Consensus 176 P~SLk~L~ls~n~~~s---LeI~~~sLP~nl-~L~f~n~lkL~~~~f 218 (426)
T PRK15386 176 PESLQSITLHIEQKTT---WNISFEGFPDGL-DIDLQNSVLLSPDVF 218 (426)
T ss_pred cccCcEEEeccccccc---ccCccccccccc-EechhhhcccCHHHh
Confidence 2579999987642110 00001112 456 888888866655443
No 69
>PF13013 F-box-like_2: F-box-like domain
Probab=94.83 E-value=0.03 Score=39.48 Aligned_cols=29 Identities=31% Similarity=0.299 Sum_probs=25.9
Q ss_pred cccCCCHHHHHHHHhcCCChhhhhhHHHhhh
Q 016845 7 INTCLPDEVILEIFRHLDSKASRDACSLVCR 37 (381)
Q Consensus 7 i~~~LP~eil~~If~~L~~~~d~~~~~~Vcr 37 (381)
+. +||+||+..||++.+ ..++..+...|+
T Consensus 22 l~-DLP~ELl~~I~~~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LL-DLPWELLQLIFDYCN-DPILLALSRTCR 50 (109)
T ss_pred hh-hChHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 55 799999999999999 588888888887
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.80 E-value=0.028 Score=27.51 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=9.9
Q ss_pred CCCCEEeccCCCCCChHHHHHH
Q 016845 344 KELTHLEINGCHNIGTMGLESI 365 (381)
Q Consensus 344 ~~L~~L~l~~c~~~~~~~~~~l 365 (381)
++|+.|+|++|. ++++++..+
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHh
Confidence 455555555543 555555544
No 71
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.53 E-value=0.032 Score=48.55 Aligned_cols=12 Identities=25% Similarity=0.210 Sum_probs=6.1
Q ss_pred cCCCCCeEeccC
Q 016845 290 QCLSLELLALYS 301 (381)
Q Consensus 290 ~~~~L~~L~l~~ 301 (381)
++.+|++|.+.+
T Consensus 526 nmtnL~hLeL~g 537 (565)
T KOG0472|consen 526 NMTNLRHLELDG 537 (565)
T ss_pred cccceeEEEecC
Confidence 445555555544
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.39 E-value=0.037 Score=27.06 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=10.8
Q ss_pred CCCCEEEeeccccChhHHHHH
Q 016845 164 IHLKSLDLQGCYVGDQGLAAV 184 (381)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~ 184 (381)
++|++|+|++|.+++.+...+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456666666666655555444
No 73
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.69 E-value=0.038 Score=43.38 Aligned_cols=107 Identities=21% Similarity=0.200 Sum_probs=55.1
Q ss_pred CCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCC
Q 016845 188 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 267 (381)
Q Consensus 188 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 267 (381)
..+...+++++.+......+.. .++|.+|.+... .++... ..+...+|+|+.|.+.+|++..-+-..-...||
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~-----l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPH-----LPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCP 113 (233)
T ss_pred ccccceecccccchhhcccCCC-----ccccceEEecCC-cceeec-cchhhhccccceEEecCcchhhhhhcchhccCC
Confidence 3455556666544222222211 267777777663 333222 123345677777777776654432222234577
Q ss_pred CCcEEEeecccCCHHH--HHHHHhcCCCCCeEeccC
Q 016845 268 LLRVLKLQCINVTDEA--LVAVGNQCLSLELLALYS 301 (381)
Q Consensus 268 ~L~~L~l~~~~~~~~~--l~~l~~~~~~L~~L~l~~ 301 (381)
+|+.|.+-.+.+.... -..+....|+|+.|++.+
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7777777666554421 011222457777777755
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.14 E-value=0.038 Score=51.43 Aligned_cols=46 Identities=30% Similarity=0.422 Sum_probs=40.0
Q ss_pred CccccccCCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhccccee
Q 016845 3 GHDRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTL 50 (381)
Q Consensus 3 ~~~~i~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~ 50 (381)
..|.|. .||.|+...||.+|+ .+++..+++||+.|+.++.....|.
T Consensus 104 ~~dfi~-~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 104 QRDFLS-LLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred ccchhh-cccchhcccccccCC-HHHhhhhhhhcchhhhhhhccchhh
Confidence 357788 899999999999999 5999999999999999987755444
No 75
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.64 E-value=0.018 Score=50.12 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCceEeeecCceee
Q 016845 61 FVKLLSRRFANVKSIHIDERLSV 83 (381)
Q Consensus 61 ~~~~~~~~~~~~~~l~~~~~~~~ 83 (381)
++......++++..++++..+-.
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln 448 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN 448 (565)
T ss_pred cchHHHHhhhcceeeecccchhh
Confidence 44455566677777776655433
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.14 E-value=0.14 Score=46.28 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=35.9
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhC-CCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKC-IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
+.++.|.+.+.. + ..+....... ++|+.|+++++.+... ..-...+++|+.|.++.+. +.+..... .. .+
T Consensus 116 ~~l~~L~l~~n~-i--~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~-l~~l~~~~--~~-~~ 186 (394)
T COG4886 116 TNLTSLDLDNNN-I--TDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFND-LSDLPKLL--SN-LS 186 (394)
T ss_pred cceeEEecCCcc-c--ccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCch-hhhhhhhh--hh-hh
Confidence 456666665431 1 1222222233 2666666666655432 1112345666666666554 22211111 01 15
Q ss_pred CccEEeccC
Q 016845 217 SLKSLGIAA 225 (381)
Q Consensus 217 ~L~~L~l~~ 225 (381)
.|+.|++++
T Consensus 187 ~L~~L~ls~ 195 (394)
T COG4886 187 NLNNLDLSG 195 (394)
T ss_pred hhhheeccC
Confidence 666666665
No 77
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=91.26 E-value=0.0015 Score=49.57 Aligned_cols=131 Identities=18% Similarity=0.088 Sum_probs=72.5
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
+.+|+.|++.+. .-+.++.-...+|.|+.|++..+.+... ...+ ..+|.|+.|++.+.. +....+..-.-. ..
T Consensus 55 l~nlevln~~nn---qie~lp~~issl~klr~lnvgmnrl~~l-prgf-gs~p~levldltynn-l~e~~lpgnff~-m~ 127 (264)
T KOG0617|consen 55 LKNLEVLNLSNN---QIEELPTSISSLPKLRILNVGMNRLNIL-PRGF-GSFPALEVLDLTYNN-LNENSLPGNFFY-MT 127 (264)
T ss_pred hhhhhhhhcccc---hhhhcChhhhhchhhhheecchhhhhcC-cccc-CCCchhhhhhccccc-cccccCCcchhH-HH
Confidence 457777777653 2334444556788899998887654321 1112 246788888888654 433322110000 14
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccC
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (381)
.|+.|.+.+... +-+..-...+.+|+.|.+..+.+-. +..-...+..|++|++.++.+
T Consensus 128 tlralyl~dndf---e~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 128 TLRALYLGDNDF---EILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred HHHHHHhcCCCc---ccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhccccee
Confidence 666677765321 0011112467788888888765422 222233466788999977655
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.83 E-value=0.37 Score=24.56 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=14.3
Q ss_pred CCCCEEEeeccccChhHHHHHHh
Q 016845 164 IHLKSLDLQGCYVGDQGLAAVGK 186 (381)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~ 186 (381)
++|++|+|++|.+++.+...+++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 45666777766666666555543
No 79
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.69 E-value=0.23 Score=44.87 Aligned_cols=147 Identities=20% Similarity=0.119 Sum_probs=80.7
Q ss_pred CccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCc
Q 016845 139 KLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSL 218 (381)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 218 (381)
+|+.|++.+. .+ ..+..-...+++|+.|+++++.+.+- .......++|+.|++++.. +.+..-. .. ....|
T Consensus 141 nL~~L~l~~N-~i--~~l~~~~~~l~~L~~L~l~~N~l~~l--~~~~~~~~~L~~L~ls~N~-i~~l~~~--~~-~~~~L 211 (394)
T COG4886 141 NLKELDLSDN-KI--ESLPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSNLNNLDLSGNK-ISDLPPE--IE-LLSAL 211 (394)
T ss_pred hccccccccc-ch--hhhhhhhhccccccccccCCchhhhh--hhhhhhhhhhhheeccCCc-cccCchh--hh-hhhhh
Confidence 7888888753 22 22223345788899999888877643 2222146788888888755 3321111 00 11347
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEe
Q 016845 219 KSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLA 298 (381)
Q Consensus 219 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~ 298 (381)
++|.+.+...+.. ......+.++..+.+..+.+... ......++.++.|+++++.+++... .....+++.|+
T Consensus 212 ~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~ 283 (394)
T COG4886 212 EELDLSNNSIIEL---LSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELD 283 (394)
T ss_pred hhhhhcCCcceec---chhhhhcccccccccCCceeeec--cchhccccccceecccccccccccc---ccccCccCEEe
Confidence 7777776421111 11123455666666555544331 2233456668888887776665332 22456777777
Q ss_pred ccCC
Q 016845 299 LYSF 302 (381)
Q Consensus 299 l~~~ 302 (381)
+++.
T Consensus 284 ~s~n 287 (394)
T COG4886 284 LSGN 287 (394)
T ss_pred ccCc
Confidence 7764
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.96 E-value=0.49 Score=24.09 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=11.7
Q ss_pred CCCCEEEcccCCCChhHHHHHH
Q 016845 242 KSLETLSLDSEFIHNKGVHAVA 263 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~ 263 (381)
++|++|++++|.+.+++...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 3455555555555555554443
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.81 E-value=0.84 Score=41.82 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=15.9
Q ss_pred CCCCcEEEeecccCCH-HHHHHHHhcCCCCCeEeccC
Q 016845 266 CPLLRVLKLQCINVTD-EALVAVGNQCLSLELLALYS 301 (381)
Q Consensus 266 ~~~L~~L~l~~~~~~~-~~l~~l~~~~~~L~~L~l~~ 301 (381)
.|.+..+.++.|.+.. +.+..+....|.|+.|+|++
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~ 253 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSH 253 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeeccc
Confidence 3444444444433322 23334444445555555544
No 82
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=86.72 E-value=0.6 Score=23.30 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=13.0
Q ss_pred CCEEeccCCCCCChHHHHHHHhcCC
Q 016845 346 LTHLEINGCHNIGTMGLESIGKFCR 370 (381)
Q Consensus 346 L~~L~l~~c~~~~~~~~~~l~~~~~ 370 (381)
|+.|.|.......++.++.++.+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 5555555543333445566665555
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.13 E-value=0.59 Score=20.56 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=4.6
Q ss_pred CCCEEEeeccc
Q 016845 165 HLKSLDLQGCY 175 (381)
Q Consensus 165 ~L~~L~l~~~~ 175 (381)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 44555555544
No 84
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=85.41 E-value=0.24 Score=36.58 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=7.7
Q ss_pred cCCCCCEEEcccCCC
Q 016845 240 HCKSLETLSLDSEFI 254 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~ 254 (381)
.+|.|+.|+++.|.+
T Consensus 98 am~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 98 AMPALRSLNLRFNPL 112 (177)
T ss_pred hhHHhhhcccccCcc
Confidence 455555555555444
No 85
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=84.98 E-value=0.28 Score=44.64 Aligned_cols=103 Identities=24% Similarity=0.185 Sum_probs=62.6
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
.+|+.|++.+. .+. .+......+++|++|++++|.++... . ...++.|+.|.+.+|.+..-. .+. .++.|+
T Consensus 95 ~~l~~l~l~~n-~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~--~-l~~l~~L~~L~l~~N~i~~~~--~~~-~l~~L~ 165 (414)
T KOG0531|consen 95 KSLEALDLYDN-KIE--KIENLLSSLVNLQVLDLSFNKITKLE--G-LSTLTLLKELNLSGNLISDIS--GLE-SLKSLK 165 (414)
T ss_pred cceeeeecccc-chh--hcccchhhhhcchheecccccccccc--c-hhhccchhhheeccCcchhcc--CCc-cchhhh
Confidence 67788877763 222 22231346889999999998876522 1 123566889999888776421 211 257788
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 329 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 329 (381)
.++++++....-... . ...+.+++.+.+.++.
T Consensus 166 ~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 166 LLDLSYNRIVDIEND-E-LSELISLEELDLGGNS 197 (414)
T ss_pred cccCCcchhhhhhhh-h-hhhccchHHHhccCCc
Confidence 888877542221111 1 3457788888888864
No 86
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=84.39 E-value=0.25 Score=44.94 Aligned_cols=105 Identities=28% Similarity=0.228 Sum_probs=48.7
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
+.+|+.|++.+. .-..+......+++|++|+++++.|+.- ..+. .++.|+.|++.++..-.-.++.. .+
T Consensus 94 ~~~l~~l~l~~n---~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~-~l~~L~~L~l~~N~i~~~~~~~~-----l~ 162 (414)
T KOG0531|consen 94 LKSLEALDLYDN---KIEKIENLLSSLVNLQVLDLSFNKITKL--EGLS-TLTLLKELNLSGNLISDISGLES-----LK 162 (414)
T ss_pred ccceeeeecccc---chhhcccchhhhhcchheeccccccccc--cchh-hccchhhheeccCcchhccCCcc-----ch
Confidence 455666666542 1122222234566777777777766532 2221 23446666666654211111111 14
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCC
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFI 254 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 254 (381)
.|+.+++.++ .+....... ...+++++.+.+.++.+
T Consensus 163 ~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 163 SLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred hhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCch
Confidence 5666666653 222211100 23556666666666543
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=82.82 E-value=2.3 Score=39.13 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=20.1
Q ss_pred hCCCCCEEEeeccccCh-hHHHHHHhhCCCCCeEeccCC
Q 016845 162 KCIHLKSLDLQGCYVGD-QGLAAVGKVCNQLEDLNLRFC 199 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 199 (381)
+.|.+..++|++|.+.. +.+..+....|+|+.|+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555556665555332 344445555566666666554
No 88
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=79.16 E-value=0.93 Score=33.60 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=48.0
Q ss_pred CCcEEEeecccCC--HHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 016845 268 LLRVLKLQCINVT--DEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKE 345 (381)
Q Consensus 268 ~L~~L~l~~~~~~--~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 345 (381)
-+..++++++.+- ......+. ....|+..+++++. +.+ .-..+...+|.++.|+++++ .+++-..+ + ..+|.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~-~~~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl~~n-eisdvPeE-~-Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLS-KGYELTKISLSDNG-FKK-FPKKFTIKFPTATTLNLANN-EISDVPEE-L-AAMPA 101 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHh-CCceEEEEecccch-hhh-CCHHHhhccchhhhhhcchh-hhhhchHH-H-hhhHH
Confidence 3555666544332 22333333 34567778887642 221 11234445778899999885 46665444 3 44899
Q ss_pred CCEEeccCCC
Q 016845 346 LTHLEINGCH 355 (381)
Q Consensus 346 L~~L~l~~c~ 355 (381)
|+.|+++..+
T Consensus 102 Lr~lNl~~N~ 111 (177)
T KOG4579|consen 102 LRSLNLRFNP 111 (177)
T ss_pred hhhcccccCc
Confidence 9999999854
No 89
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=73.96 E-value=1.9 Score=35.54 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhccccee
Q 016845 10 CLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTL 50 (381)
Q Consensus 10 ~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~ 50 (381)
+||.|+...|+.+|++.+|+..+++|-..-+.++.....|.
T Consensus 204 dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWk 244 (332)
T KOG3926|consen 204 DLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWK 244 (332)
T ss_pred cchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHH
Confidence 79999999999999999999999999877666655444443
No 90
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=70.10 E-value=2.6 Score=19.84 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=8.4
Q ss_pred CCCEEEeeccccC
Q 016845 165 HLKSLDLQGCYVG 177 (381)
Q Consensus 165 ~L~~L~l~~~~~~ 177 (381)
+|++|+|++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4667777776654
No 91
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=70.01 E-value=4.1 Score=28.27 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.6
Q ss_pred ccccCCCHHHHHHHHhcCCChhhhhhH
Q 016845 6 RINTCLPDEVILEIFRHLDSKASRDAC 32 (381)
Q Consensus 6 ~i~~~LP~eil~~If~~L~~~~d~~~~ 32 (381)
..|..||.||-..|+++|+ .+|+..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~-~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLS-NKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCC-HHHHHHH
Confidence 4567899999999999999 4887654
No 92
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=57.02 E-value=9.3 Score=18.65 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=8.0
Q ss_pred CCCCEEEeeccccC
Q 016845 164 IHLKSLDLQGCYVG 177 (381)
Q Consensus 164 ~~L~~L~l~~~~~~ 177 (381)
++|+.|+|.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666543
No 93
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=57.02 E-value=9.3 Score=18.65 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=8.0
Q ss_pred CCCCEEEeeccccC
Q 016845 164 IHLKSLDLQGCYVG 177 (381)
Q Consensus 164 ~~L~~L~l~~~~~~ 177 (381)
++|+.|+|.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666543
No 94
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=56.00 E-value=7 Score=28.39 Aligned_cols=62 Identities=16% Similarity=0.334 Sum_probs=26.5
Q ss_pred HHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccc
Q 016845 310 LHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYAS 373 (381)
Q Consensus 310 ~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~ 373 (381)
+..+..+++.|.. +|+...--.......+..+|+.| ..+|..-.--.......+-..|++|+
T Consensus 53 m~~mF~~~~~l~~-dls~w~~s~v~~~~~mF~~~~~l-~~~l~~wn~~~v~~~~~mF~~~~~l~ 114 (120)
T PF03382_consen 53 MSGMFAGCSSLNQ-DLSNWDTSNVTNMSNMFSGCSSL-NQDLSNWNTSSVTNMSSMFANCSNLN 114 (120)
T ss_pred HHHHHhhhhhcCC-CcccccccccccHHHHHhhhHHc-CCchhhccccccccHHHHHhChHhcc
Confidence 3344445555555 55432111122345555556666 44444311111122444445555544
No 95
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=51.41 E-value=2.8 Score=38.95 Aligned_cols=123 Identities=18% Similarity=0.123 Sum_probs=51.2
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCC--hHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHh
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLT--DTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGS 239 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 239 (381)
.+..|..|+|+.+++.... ..++ .+| |+.|-+++.. +. ...+. . .+.|..|+.+.|.- . .+..-..
T Consensus 119 ~L~~lt~l~ls~NqlS~lp-~~lC-~lp-Lkvli~sNNk-l~~lp~~ig-~----~~tl~~ld~s~nei-~--slpsql~ 186 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSHLP-DGLC-DLP-LKVLIVSNNK-LTSLPEEIG-L----LPTLAHLDVSKNEI-Q--SLPSQLG 186 (722)
T ss_pred hhhHHHHhhhccchhhcCC-hhhh-cCc-ceeEEEecCc-cccCCcccc-c----chhHHHhhhhhhhh-h--hchHHhh
Confidence 3455666666666544221 1122 133 6666665543 11 11111 0 14555555555321 1 1111112
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccC
Q 016845 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYS 301 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~ 301 (381)
++..|+.|.+..|++.+-. ..+. .=.|..|+++||.+..-.+. ..++..|+.|.|.+
T Consensus 187 ~l~slr~l~vrRn~l~~lp-~El~--~LpLi~lDfScNkis~iPv~--fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLEDLP-EELC--SLPLIRLDFSCNKISYLPVD--FRKMRHLQVLQLEN 243 (722)
T ss_pred hHHHHHHHHHhhhhhhhCC-HHHh--CCceeeeecccCceeecchh--hhhhhhheeeeecc
Confidence 3445555555554432211 1111 12355566666655432221 12345566666654
No 96
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=45.24 E-value=1.1 Score=41.52 Aligned_cols=105 Identities=19% Similarity=0.150 Sum_probs=45.9
Q ss_pred CCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCC
Q 016845 165 HLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSL 244 (381)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 244 (381)
-|+.|-++++.++.. ...+. ..+.|..|+.+.+...+-. ..+ .. +.+|+.|.+... ++.+.. +.+ ..=.|
T Consensus 144 pLkvli~sNNkl~~l-p~~ig-~~~tl~~ld~s~nei~slp--sql-~~-l~slr~l~vrRn-~l~~lp-~El--~~LpL 213 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSL-PEEIG-LLPTLAHLDVSKNEIQSLP--SQL-GY-LTSLRDLNVRRN-HLEDLP-EEL--CSLPL 213 (722)
T ss_pred cceeEEEecCccccC-Ccccc-cchhHHHhhhhhhhhhhch--HHh-hh-HHHHHHHHHhhh-hhhhCC-HHH--hCCce
Confidence 377777777765421 12222 3455666666655421110 000 00 134444444431 111100 111 12235
Q ss_pred CEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCH
Q 016845 245 ETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTD 281 (381)
Q Consensus 245 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 281 (381)
.+|+++.|.+..- ..-+..+.+|+.|.|.+|.+..
T Consensus 214 i~lDfScNkis~i--Pv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 214 IRLDFSCNKISYL--PVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeeecccCceeec--chhhhhhhhheeeeeccCCCCC
Confidence 6666666655432 2223445666666666665543
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=40.19 E-value=25 Score=17.52 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=8.1
Q ss_pred CCCCEEEeecccc
Q 016845 164 IHLKSLDLQGCYV 176 (381)
Q Consensus 164 ~~L~~L~l~~~~~ 176 (381)
.+|+.|+++.|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4566666666654
No 98
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=38.39 E-value=20 Score=25.99 Aligned_cols=78 Identities=17% Similarity=0.357 Sum_probs=43.0
Q ss_pred cCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccC--CCCCChHHHHHHHh
Q 016845 290 QCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEING--CHNIGTMGLESIGK 367 (381)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~--c~~~~~~~~~~l~~ 367 (381)
.|++++ ..+..........+..+..+++.| ..+|+...--....+..+..+|+.|.. +|+. ..++ .....+-.
T Consensus 9 ~~~~l~-~~i~~~dts~vt~m~~mF~~~~~l-~~~l~~w~~s~vt~m~~mF~~~~~l~~-dls~w~~s~v--~~~~~mF~ 83 (120)
T PF03382_consen 9 NCTNLN-IDISNWDTSNVTDMSYMFYGCTSL-NQDLSNWDTSNVTNMSGMFAGCSSLNQ-DLSNWDTSNV--TNMSNMFS 83 (120)
T ss_pred hchhcc-CCccccccccceeHHHHhhcchhc-cCChhhhcchhheeHHHHHhhhhhcCC-Cccccccccc--ccHHHHHh
Confidence 455555 455443322233455566667777 333544211122346677778888888 7765 2233 34566666
Q ss_pred cCCcc
Q 016845 368 FCRYA 372 (381)
Q Consensus 368 ~~~~L 372 (381)
.|.+|
T Consensus 84 ~~~~l 88 (120)
T PF03382_consen 84 GCSSL 88 (120)
T ss_pred hhHHc
Confidence 77777
No 99
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=36.38 E-value=24 Score=30.72 Aligned_cols=39 Identities=18% Similarity=0.572 Sum_probs=31.2
Q ss_pred cccCCCHHHHHHHHhcCCC-------hhhhhhHHHhhhhHHHhhhc
Q 016845 7 INTCLPDEVILEIFRHLDS-------KASRDACSLVCRRWLTLERL 45 (381)
Q Consensus 7 i~~~LP~eil~~If~~L~~-------~~d~~~~~~Vcr~W~~~~~~ 45 (381)
.++.||.|.|..|..+... .+..+.++-||+.|++.+..
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 4457999999999998863 23568899999999997543
No 100
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=34.14 E-value=10 Score=32.55 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=37.7
Q ss_pred cCCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhcccceeee
Q 016845 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRI 52 (381)
Q Consensus 9 ~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~ 52 (381)
+.+|++++..|.+++. .+++.+++.|+++-..+......|.+.
T Consensus 9 e~~~~~~l~~vls~~~-~~~~~~~a~vs~rLk~~~s~~~lw~r~ 51 (386)
T KOG4408|consen 9 EWLPRDPLHLVLSFLL-YRDLINCAYVSRRLKELGSHLPLWNRP 51 (386)
T ss_pred hhcccccceeeecccc-hhhhhcceeechHHhhhhhcccccccc
Confidence 3699999999999999 599999999999999998777777644
No 101
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=31.25 E-value=1.4e+02 Score=18.81 Aligned_cols=6 Identities=0% Similarity=-0.003 Sum_probs=2.5
Q ss_pred Ccccee
Q 016845 370 RYASFC 375 (381)
Q Consensus 370 ~~L~~l 375 (381)
|+|+++
T Consensus 62 ~~Le~l 67 (70)
T PF07735_consen 62 PRLEYL 67 (70)
T ss_pred cCCcEE
Confidence 444443
No 102
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=30.42 E-value=2.1e+02 Score=25.10 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=16.1
Q ss_pred HHHHHHhcCCCccEEecCCCCCCChHHHHHHH
Q 016845 129 GLNALADGFSKLEKLSLIWCSNISSLGLMSLA 160 (381)
Q Consensus 129 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 160 (381)
.+..+-..-++++.+++.+..+++...+..+.
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~ 220 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFS 220 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHH
Confidence 34444444455666666555555554444433
No 103
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=29.51 E-value=1.6e+02 Score=25.85 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=64.5
Q ss_pred HHHHHhcCCCCcEEEeec-ccCCHHHHHHHHh---cCCCCCeEeccCCCCCC--HHHHHHHHhcCCCCCEEeccCCCCCC
Q 016845 259 VHAVAQGCPLLRVLKLQC-INVTDEALVAVGN---QCLSLELLALYSFQQFT--DKGLHAVGKGCKKLKNLTLSDCYFLS 332 (381)
Q Consensus 259 ~~~~~~~~~~L~~L~l~~-~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~~L~~L~l~~~~~i~ 332 (381)
+..+-..-|.++...++. -.+....+..+.. .....+...+.+...-+ ...+..+++.++.|++|++.++ .|+
T Consensus 190 leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesn-FIt 268 (353)
T KOG3735|consen 190 LERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESN-FIT 268 (353)
T ss_pred HHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccc-ccc
Confidence 444445567888888863 3344444443332 33455555554422111 1234455667888999999884 588
Q ss_pred HHHHHHHHhcCC---CCCEEeccCCCCCCh----HHHHHHHhcCCccceeEccc
Q 016845 333 DMGLEAIATGCK---ELTHLEINGCHNIGT----MGLESIGKFCRYASFCRLNL 379 (381)
Q Consensus 333 ~~~l~~l~~~~~---~L~~L~l~~c~~~~~----~~~~~l~~~~~~L~~l~l~~ 379 (381)
..++..+...+. .|..+.+.+-..+-. --+..+++.+.+|-..-.+|
T Consensus 269 g~gi~a~~~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy~f 322 (353)
T KOG3735|consen 269 GLGIMALLRALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGYHF 322 (353)
T ss_pred cHHHHHHHHHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhccccccccccc
Confidence 888887776543 344444443222211 12344455556655554444
No 104
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=24.68 E-value=60 Score=19.18 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=21.3
Q ss_pred CCCCEEeccCCCCCCh--HHHHHHHhcCCccceeEcc
Q 016845 344 KELTHLEINGCHNIGT--MGLESIGKFCRYASFCRLN 378 (381)
Q Consensus 344 ~~L~~L~l~~c~~~~~--~~~~~l~~~~~~L~~l~l~ 378 (381)
.+|+.+.+.+-..... +-+..+.++.+.|+.+.|.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 4667777665322222 2456677778888877765
No 105
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=23.90 E-value=72 Score=15.95 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=7.4
Q ss_pred HHhCCCCCEEEee
Q 016845 160 AQKCIHLKSLDLQ 172 (381)
Q Consensus 160 ~~~~~~L~~L~l~ 172 (381)
+..+|+|+.||..
T Consensus 9 i~~LPqL~~LD~~ 21 (26)
T smart00446 9 IRLLPQLRKLDXX 21 (26)
T ss_pred HHHCCccceeccc
Confidence 3456666666643
No 106
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=23.16 E-value=1.2e+02 Score=22.13 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=25.5
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccC
Q 016845 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEING 353 (381)
Q Consensus 317 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 353 (381)
-++=+.+.++.- -++..+-.+++.||+|+.+.+-.
T Consensus 16 n~nE~~VHlAFR--PSN~Dif~Lv~~CP~lk~iqiP~ 50 (131)
T PF08004_consen 16 NPNEEIVHLAFR--PSNKDIFSLVERCPNLKAIQIPP 50 (131)
T ss_pred CCCceEEEEEec--CcchHHHHHHHhCCCCeEEeCCh
Confidence 356666777663 45667888888899999888754
Done!