Query 016845
Match_columns 381
No_of_seqs 254 out of 2708
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 04:44:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 3.6E-34 1.2E-38 270.4 26.0 362 3-377 2-439 (594)
2 3ogk_B Coronatine-insensitive 100.0 3E-32 1E-36 257.1 25.2 364 9-380 14-473 (592)
3 2ast_B S-phase kinase-associat 100.0 1.7E-32 6E-37 240.4 21.2 286 6-347 8-299 (336)
4 3ogk_B Coronatine-insensitive 99.9 1.2E-22 4.2E-27 191.5 26.5 235 136-377 291-545 (592)
5 2p1m_B Transport inhibitor res 99.9 6E-22 2E-26 186.9 29.9 209 164-379 289-515 (594)
6 2ast_B S-phase kinase-associat 99.8 4.5E-20 1.5E-24 161.4 17.3 237 125-373 59-299 (336)
7 1z7x_W Ribonuclease inhibitor; 99.8 6.5E-19 2.2E-23 160.9 24.7 239 136-380 54-323 (461)
8 1z7x_W Ribonuclease inhibitor; 99.8 9.3E-18 3.2E-22 153.2 27.1 254 120-380 63-351 (461)
9 2ca6_A RAN GTPase-activating p 99.8 4.4E-17 1.5E-21 145.1 28.2 253 119-376 38-336 (386)
10 2ca6_A RAN GTPase-activating p 99.8 7.3E-17 2.5E-21 143.7 26.6 239 135-380 29-313 (386)
11 3goz_A Leucine-rich repeat-con 99.7 1.2E-15 3.9E-20 134.6 21.8 242 133-379 17-293 (362)
12 3goz_A Leucine-rich repeat-con 99.6 4.9E-14 1.7E-18 124.2 20.4 224 132-360 44-299 (362)
13 4fmz_A Internalin; leucine ric 99.6 1.9E-14 6.7E-19 126.1 16.1 214 136-380 130-343 (347)
14 3e4g_A ATP synthase subunit S, 99.5 7.9E-15 2.7E-19 112.4 7.4 106 267-374 61-171 (176)
15 4fmz_A Internalin; leucine ric 99.5 3.3E-13 1.1E-17 118.3 15.9 214 134-380 84-297 (347)
16 3un9_A NLR family member X1; l 99.5 2.8E-12 9.5E-17 112.7 17.7 173 138-314 72-260 (372)
17 3un9_A NLR family member X1; l 99.5 3.2E-12 1.1E-16 112.3 17.2 174 163-341 71-261 (372)
18 4fcg_A Uncharacterized protein 99.4 1.9E-15 6.5E-20 131.1 -4.1 223 137-379 80-310 (328)
19 1o6v_A Internalin A; bacterial 99.4 1.3E-12 4.5E-17 119.1 14.1 210 137-380 176-385 (466)
20 3v47_A TOLL-like receptor 5B a 99.4 4.2E-14 1.4E-18 128.8 2.3 131 242-380 275-405 (455)
21 3rgz_A Protein brassinosteroid 99.4 1.2E-14 4.2E-19 140.6 -1.9 229 135-380 123-353 (768)
22 3v47_A TOLL-like receptor 5B a 99.4 3.7E-14 1.3E-18 129.2 -0.2 234 135-380 76-381 (455)
23 3e4g_A ATP synthase subunit S, 99.4 8.3E-13 2.8E-17 101.2 7.1 103 243-347 62-170 (176)
24 1o6v_A Internalin A; bacterial 99.4 2E-11 6.7E-16 111.4 16.1 190 161-380 174-363 (466)
25 3o53_A Protein LRIM1, AGAP0063 99.3 1.6E-14 5.6E-19 124.8 -4.2 230 130-377 26-269 (317)
26 2z80_A TOLL-like receptor 2, v 99.3 3.1E-13 1.1E-17 118.7 3.1 233 136-380 74-311 (353)
27 1h6u_A Internalin H; cell adhe 99.3 4E-12 1.4E-16 109.2 10.0 188 137-354 40-227 (308)
28 1wwl_A Monocyte differentiatio 99.3 7.1E-14 2.4E-18 120.5 -2.1 206 162-380 93-306 (312)
29 2z81_A CD282 antigen, TOLL-lik 99.3 3.7E-12 1.3E-16 118.8 9.2 138 136-280 72-209 (549)
30 1h6u_A Internalin H; cell adhe 99.3 2.2E-11 7.4E-16 104.6 12.8 189 162-380 39-227 (308)
31 1fs1_A SKP2 F-BOX, cyclin A/CD 99.3 2.2E-12 7.5E-17 78.5 4.3 46 5-52 7-52 (53)
32 1xku_A Decorin; proteoglycan, 99.3 1.3E-13 4.6E-18 119.9 -2.0 199 136-354 74-273 (330)
33 3t6q_A CD180 antigen; protein- 99.3 3E-14 1E-18 134.6 -6.6 60 137-200 277-336 (606)
34 2z66_A Variable lymphocyte rec 99.3 5.5E-15 1.9E-19 127.2 -10.7 211 135-357 49-261 (306)
35 3o6n_A APL1; leucine-rich repe 99.3 2E-13 6.7E-18 121.7 -1.0 85 136-226 91-175 (390)
36 1ozn_A Reticulon 4 receptor; N 99.3 1E-13 3.5E-18 118.0 -2.8 208 137-357 31-238 (285)
37 3t6q_A CD180 antigen; protein- 99.3 6.8E-14 2.3E-18 132.1 -4.4 63 136-200 299-361 (606)
38 3oja_B Anopheles plasmodium-re 99.3 2.4E-13 8.2E-18 127.8 -1.4 61 137-200 98-158 (597)
39 2z66_A Variable lymphocyte rec 99.3 1.8E-14 6.1E-19 124.0 -8.7 228 138-380 28-258 (306)
40 2z81_A CD282 antigen, TOLL-lik 99.3 7.2E-12 2.5E-16 116.8 7.9 64 135-200 95-159 (549)
41 1ozn_A Reticulon 4 receptor; N 99.2 3.9E-13 1.3E-17 114.4 -1.1 205 163-380 31-235 (285)
42 2id5_A Lingo-1, leucine rich r 99.2 2.3E-13 7.9E-18 124.6 -3.0 229 136-380 78-306 (477)
43 2z80_A TOLL-like receptor 2, v 99.2 1.1E-12 3.8E-17 115.1 0.9 231 137-380 51-287 (353)
44 4fcg_A Uncharacterized protein 99.2 4.5E-13 1.6E-17 116.1 -1.7 201 162-380 79-287 (328)
45 3oja_A Leucine-rich immune mol 99.2 9.8E-14 3.4E-18 126.9 -6.5 150 216-377 120-269 (487)
46 4glp_A Monocyte differentiatio 99.2 2.5E-12 8.6E-17 110.7 2.5 229 138-380 64-304 (310)
47 3rgz_A Protein brassinosteroid 99.2 1.7E-13 5.9E-18 132.6 -5.7 232 137-380 293-548 (768)
48 3zyi_A Leucine-rich repeat-con 99.2 2.1E-13 7.2E-18 123.9 -4.8 205 136-355 97-301 (452)
49 2id5_A Lingo-1, leucine rich r 99.2 6.4E-13 2.2E-17 121.7 -2.0 230 135-380 53-282 (477)
50 3zyj_A Leucine-rich repeat-con 99.2 2.4E-13 8.2E-18 123.1 -4.8 205 136-355 86-290 (440)
51 1wwl_A Monocyte differentiatio 99.2 3.6E-13 1.2E-17 116.1 -3.7 205 136-354 93-306 (312)
52 2z7x_B TOLL-like receptor 1, v 99.2 2.4E-11 8.1E-16 112.5 8.2 107 135-254 42-150 (520)
53 3zyj_A Leucine-rich repeat-con 99.2 3.7E-13 1.3E-17 121.8 -4.2 202 162-379 86-288 (440)
54 2ra8_A Uncharacterized protein 99.2 2E-10 6.9E-15 100.1 12.9 204 138-353 107-339 (362)
55 3bz5_A Internalin-J, INLJ; leu 99.2 2.3E-11 8E-16 110.2 7.2 200 136-378 62-262 (457)
56 3zyi_A Leucine-rich repeat-con 99.2 5.8E-13 2E-17 121.0 -3.6 225 138-380 75-300 (452)
57 1xku_A Decorin; proteoglycan, 99.2 8.6E-13 2.9E-17 114.7 -2.5 227 135-380 97-329 (330)
58 3vq2_A TLR4, TOLL-like recepto 99.2 3E-13 1E-17 127.7 -6.1 85 266-354 447-531 (606)
59 2z7x_B TOLL-like receptor 1, v 99.2 2.1E-11 7.1E-16 112.9 6.4 60 136-200 88-149 (520)
60 2ra8_A Uncharacterized protein 99.2 7.8E-11 2.7E-15 102.7 9.5 186 135-329 136-341 (362)
61 4glp_A Monocyte differentiatio 99.2 4.2E-13 1.4E-17 115.6 -5.3 224 120-358 71-307 (310)
62 3vq2_A TLR4, TOLL-like recepto 99.2 1.3E-13 4.4E-18 130.2 -9.5 156 216-380 376-531 (606)
63 4ecn_A Leucine-rich repeat pro 99.2 3.9E-12 1.3E-16 123.1 0.5 157 136-302 446-629 (876)
64 1ogq_A PGIP-2, polygalacturona 99.1 1.5E-13 5.1E-18 118.4 -9.1 228 135-380 73-301 (313)
65 3o53_A Protein LRIM1, AGAP0063 99.1 6.7E-12 2.3E-16 108.3 1.1 208 155-380 25-247 (317)
66 1ogq_A PGIP-2, polygalacturona 99.1 8.4E-14 2.9E-18 120.0 -10.9 204 136-355 99-302 (313)
67 3o6n_A APL1; leucine-rich repe 99.1 2.2E-12 7.4E-17 114.9 -2.2 223 135-380 66-328 (390)
68 2z63_A TOLL-like receptor 4, v 99.1 5.6E-13 1.9E-17 124.9 -6.5 204 163-380 324-528 (570)
69 2z63_A TOLL-like receptor 4, v 99.1 2.4E-13 8.3E-18 127.4 -9.3 224 136-380 280-504 (570)
70 2ft3_A Biglycan; proteoglycan, 99.1 7.1E-13 2.4E-17 115.4 -6.1 222 136-379 76-303 (332)
71 3oja_B Anopheles plasmodium-re 99.1 2.4E-12 8.3E-17 121.0 -3.1 116 134-257 71-186 (597)
72 4eco_A Uncharacterized protein 99.1 3.7E-12 1.3E-16 120.5 -3.4 158 136-302 204-387 (636)
73 3bz5_A Internalin-J, INLJ; leu 99.1 1.9E-10 6.5E-15 104.2 7.9 202 137-380 41-243 (457)
74 1h6t_A Internalin B; cell adhe 99.1 5.5E-10 1.9E-14 94.9 9.9 143 137-301 45-187 (291)
75 4ezg_A Putative uncharacterize 99.1 2.4E-10 8.1E-15 91.3 7.0 148 188-353 43-190 (197)
76 4ecn_A Leucine-rich repeat pro 99.1 1.6E-11 5.5E-16 118.8 -0.0 35 164-200 548-584 (876)
77 3rfs_A Internalin B, repeat mo 99.1 8.5E-12 2.9E-16 105.2 -1.9 176 137-328 40-215 (272)
78 4ezg_A Putative uncharacterize 99.0 9.8E-11 3.4E-15 93.5 4.3 150 162-329 42-192 (197)
79 2ft3_A Biglycan; proteoglycan, 99.0 1E-12 3.6E-17 114.3 -8.1 227 135-380 99-330 (332)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 2E-11 6.8E-16 114.1 -0.4 12 70-81 52-63 (562)
81 3oja_A Leucine-rich immune mol 99.0 1.2E-11 4.3E-16 113.0 -1.9 222 130-380 26-247 (487)
82 1ziw_A TOLL-like receptor 3; i 99.0 7.8E-12 2.7E-16 119.7 -3.7 210 162-380 403-619 (680)
83 3g06_A SSPH2 (leucine-rich rep 99.0 1.4E-10 4.8E-15 108.5 4.7 116 240-380 179-294 (622)
84 1h6t_A Internalin B; cell adhe 99.0 6E-10 2E-14 94.7 8.1 168 162-355 44-211 (291)
85 4eco_A Uncharacterized protein 99.0 6.6E-12 2.2E-16 118.8 -4.5 103 267-378 433-544 (636)
86 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 1.5E-10 5E-15 108.2 4.4 37 163-199 120-156 (562)
87 1m9s_A Internalin B; cell inva 99.0 1E-09 3.5E-14 102.5 8.4 166 137-328 42-207 (605)
88 3g06_A SSPH2 (leucine-rich rep 99.0 9.7E-10 3.3E-14 102.8 7.9 193 136-380 79-271 (622)
89 2z62_A TOLL-like receptor 4, v 98.9 5.1E-12 1.8E-16 106.9 -7.3 203 138-354 28-234 (276)
90 1m9s_A Internalin B; cell inva 98.9 1E-09 3.5E-14 102.5 7.4 167 162-354 41-207 (605)
91 1ziw_A TOLL-like receptor 3; i 98.9 3.7E-11 1.3E-15 115.0 -2.9 211 136-355 403-620 (680)
92 2z62_A TOLL-like receptor 4, v 98.9 2.3E-11 7.9E-16 102.8 -4.0 203 164-380 28-234 (276)
93 3j0a_A TOLL-like receptor 5; m 98.9 9.7E-12 3.3E-16 121.6 -7.7 61 316-380 288-348 (844)
94 1io0_A Tropomodulin; LRR prote 98.9 6.9E-08 2.4E-12 75.9 15.7 125 234-361 28-167 (185)
95 2je0_A Acidic leucine-rich nuc 98.9 8.1E-10 2.8E-14 83.9 4.3 83 291-377 63-147 (149)
96 2je0_A Acidic leucine-rich nuc 98.9 9.4E-10 3.2E-14 83.5 4.6 13 165-177 18-30 (149)
97 3rfs_A Internalin B, repeat mo 98.9 1.8E-10 6.1E-15 97.1 0.6 179 162-356 39-217 (272)
98 3j0a_A TOLL-like receptor 5; m 98.9 9.3E-12 3.2E-16 121.8 -8.5 125 242-379 266-390 (844)
99 2o6q_A Variable lymphocyte rec 98.9 6.4E-11 2.2E-15 99.7 -3.0 179 138-328 37-215 (270)
100 1io0_A Tropomodulin; LRR prote 98.9 9.5E-08 3.3E-12 75.1 15.4 122 257-381 26-162 (185)
101 2o6q_A Variable lymphocyte rec 98.8 1E-10 3.6E-15 98.4 -3.2 180 164-355 37-216 (270)
102 2ell_A Acidic leucine-rich nuc 98.8 9.8E-10 3.3E-14 85.3 1.6 134 215-355 23-158 (168)
103 2ell_A Acidic leucine-rich nuc 98.8 1E-09 3.4E-14 85.2 1.2 39 138-177 24-62 (168)
104 1p9a_G Platelet glycoprotein I 98.8 6.7E-10 2.3E-14 94.4 -0.3 176 164-355 31-206 (290)
105 1p9a_G Platelet glycoprotein I 98.8 3.4E-10 1.2E-14 96.1 -2.7 198 162-380 8-205 (290)
106 2xwt_C Thyrotropin receptor; s 98.7 5.1E-11 1.7E-15 98.4 -7.8 200 138-355 31-237 (239)
107 1xeu_A Internalin C; cellular 98.7 1.4E-08 4.8E-13 84.8 5.6 142 137-301 40-181 (263)
108 2xwt_C Thyrotropin receptor; s 98.7 7.8E-11 2.7E-15 97.3 -8.7 199 164-379 31-235 (239)
109 1jl5_A Outer protein YOPM; leu 98.7 4.6E-09 1.6E-13 95.0 2.1 56 136-200 151-206 (454)
110 1xeu_A Internalin C; cellular 98.6 2.6E-08 9E-13 83.2 5.5 144 162-328 39-182 (263)
111 3m19_A Variable lymphocyte rec 98.6 2.5E-09 8.7E-14 88.8 -1.5 60 138-200 35-94 (251)
112 1jl5_A Outer protein YOPM; leu 98.6 8.5E-09 2.9E-13 93.3 1.6 137 138-302 131-267 (454)
113 3m19_A Variable lymphocyte rec 98.6 3.8E-09 1.3E-13 87.7 -1.7 156 164-329 35-190 (251)
114 1dce_A Protein (RAB geranylger 98.5 1.5E-09 5E-14 100.8 -6.0 125 242-377 441-567 (567)
115 3l2o_B F-box only protein 4; s 98.5 2E-08 7E-13 82.1 0.9 45 7-53 5-49 (312)
116 1a9n_A U2A', U2A'; complex (nu 98.5 9.7E-08 3.3E-12 74.5 3.8 57 137-199 18-74 (176)
117 1dce_A Protein (RAB geranylger 98.4 2.1E-09 7.4E-14 99.7 -6.7 197 137-351 348-567 (567)
118 1a9n_A U2A', U2A'; complex (nu 98.4 7E-08 2.4E-12 75.3 2.5 130 216-355 19-151 (176)
119 2e31_A FBS1, F-box only protei 98.4 9.8E-08 3.4E-12 79.2 3.2 45 5-51 49-94 (297)
120 3cvr_A Invasion plasmid antige 98.4 5.7E-08 1.9E-12 89.8 1.5 191 137-365 58-250 (571)
121 1pgv_A TMD-1, tropomodulin TMD 98.3 1.2E-05 4E-10 62.8 13.1 122 232-354 31-167 (197)
122 2o6s_A Variable lymphocyte rec 98.3 7.9E-09 2.7E-13 83.2 -5.0 132 188-328 27-158 (208)
123 1ds9_A Outer arm dynein; leuci 98.3 1.9E-07 6.6E-12 74.3 3.0 110 159-279 43-152 (198)
124 4g8a_A TOLL-like receptor 4; l 98.3 8.4E-08 2.9E-12 90.9 1.0 203 138-352 52-257 (635)
125 1ds9_A Outer arm dynein; leuci 98.3 1.7E-07 5.7E-12 74.7 2.5 124 216-350 48-180 (198)
126 1pgv_A TMD-1, tropomodulin TMD 98.3 1.8E-05 6.2E-10 61.8 13.2 123 205-328 31-167 (197)
127 3cvr_A Invasion plasmid antige 98.3 4.3E-07 1.5E-11 84.0 4.2 181 163-380 58-240 (571)
128 3e6j_A Variable lymphocyte rec 98.2 1.3E-07 4.4E-12 77.2 -0.2 15 162-176 62-76 (229)
129 3sb4_A Hypothetical leucine ri 98.2 1.9E-08 6.6E-13 87.1 -5.5 38 138-177 25-62 (329)
130 2xot_A Amphoterin-induced prot 98.2 1E-07 3.5E-12 83.6 -1.0 38 162-200 62-99 (361)
131 2xot_A Amphoterin-induced prot 98.2 6.4E-08 2.2E-12 84.9 -2.6 39 240-279 110-148 (361)
132 4g8a_A TOLL-like receptor 4; l 98.2 1.7E-07 5.8E-12 88.8 -0.0 156 189-353 52-210 (635)
133 2v70_A SLIT-2, SLIT homolog 2 98.2 1.2E-07 4.2E-12 76.8 -1.1 15 162-176 55-69 (220)
134 2v9t_B SLIT homolog 2 protein 98.2 1.2E-07 4E-12 76.9 -1.9 131 189-328 32-162 (220)
135 2v70_A SLIT-2, SLIT homolog 2 98.2 1E-07 3.5E-12 77.2 -2.4 150 167-328 14-163 (220)
136 2v9t_B SLIT homolog 2 protein 98.2 1.9E-07 6.4E-12 75.7 -0.9 60 138-200 32-91 (220)
137 3e6j_A Variable lymphocyte rec 98.1 3.5E-07 1.2E-11 74.6 0.6 131 164-303 40-170 (229)
138 2o6s_A Variable lymphocyte rec 98.1 3.2E-07 1.1E-11 73.7 -0.3 61 137-200 27-87 (208)
139 3v7d_B Cell division control p 98.1 7.8E-07 2.7E-11 80.7 2.1 48 3-52 11-59 (464)
140 1p22_A F-BOX/WD-repeat protein 98.0 7.9E-07 2.7E-11 80.1 0.9 48 3-52 7-58 (435)
141 2ovr_B FBW7, F-BOX/WD repeat p 97.9 4E-06 1.4E-10 75.7 3.4 47 3-51 15-61 (445)
142 4ay9_X Follicle-stimulating ho 97.9 1.8E-08 6.1E-13 88.1 -12.1 14 162-175 52-65 (350)
143 3sb4_A Hypothetical leucine ri 97.8 1.5E-06 5E-11 75.2 -2.1 85 163-253 24-135 (329)
144 2wfh_A SLIT homolog 2 protein 97.7 5.2E-06 1.8E-10 65.6 0.3 107 216-329 31-137 (193)
145 1w8a_A SLIT protein; signaling 97.7 2.4E-06 8.2E-11 67.5 -2.3 109 216-329 29-137 (192)
146 1w8a_A SLIT protein; signaling 97.6 6E-06 2.1E-10 65.2 -0.7 39 240-279 100-138 (192)
147 2wfh_A SLIT homolog 2 protein 97.5 2.4E-05 8.2E-10 61.7 1.8 38 240-278 100-137 (193)
148 2o6r_A Variable lymphocyte rec 97.5 1E-05 3.5E-10 62.9 -0.9 108 216-329 28-135 (177)
149 2o6r_A Variable lymphocyte rec 97.5 2E-05 6.9E-10 61.2 0.8 15 240-254 98-112 (177)
150 4ay9_X Follicle-stimulating ho 97.4 5E-07 1.7E-11 78.9 -10.4 202 136-353 52-255 (350)
151 4b8c_D Glucose-repressible alc 97.3 2.7E-05 9.4E-10 74.6 -1.3 111 238-359 220-330 (727)
152 4b8c_D Glucose-repressible alc 97.2 4.9E-05 1.7E-09 72.9 0.3 110 161-281 221-330 (727)
153 3rw6_A Nuclear RNA export fact 97.1 0.001 3.5E-08 54.8 7.1 41 240-280 168-209 (267)
154 3rw6_A Nuclear RNA export fact 97.0 0.0014 4.9E-08 54.0 6.9 86 160-249 166-258 (267)
155 3g39_A Variable lymphocyte rec 96.6 0.00041 1.4E-08 53.3 0.3 11 189-199 30-40 (170)
156 2r9u_A Variable lymphocyte rec 96.3 0.00072 2.4E-08 52.1 0.3 11 189-199 33-43 (174)
157 3g39_A Variable lymphocyte rec 96.3 0.00064 2.2E-08 52.2 -0.0 61 216-279 30-90 (170)
158 2r9u_A Variable lymphocyte rec 96.2 0.00069 2.4E-08 52.2 -0.1 61 216-279 33-93 (174)
159 4fdw_A Leucine rich hypothetic 95.4 0.00052 1.8E-08 60.7 -4.5 83 264-354 268-355 (401)
160 4fdw_A Leucine rich hypothetic 95.4 0.00065 2.2E-08 60.1 -4.0 208 139-379 136-354 (401)
161 2ifg_A High affinity nerve gro 93.9 0.0096 3.3E-07 51.5 -0.1 89 186-280 28-116 (347)
162 2ifg_A High affinity nerve gro 93.6 0.012 4.2E-07 50.7 -0.1 84 216-303 31-114 (347)
163 4fs7_A Uncharacterized protein 92.2 0.0068 2.3E-07 53.5 -3.8 34 316-353 341-375 (394)
164 4gt6_A Cell surface protein; l 80.5 1.9 6.6E-05 37.6 4.9 119 239-378 262-386 (394)
165 4gt6_A Cell surface protein; l 75.4 1.1 3.8E-05 39.1 1.9 100 263-378 261-365 (394)
166 4fs7_A Uncharacterized protein 61.4 1.6 5.5E-05 38.1 -0.1 141 216-378 230-374 (394)
167 3rfe_A Platelet glycoprotein I 50.9 8.1 0.00028 27.4 2.1 36 243-279 32-67 (130)
168 4h09_A Hypothetical leucine ri 49.9 3.3 0.00011 35.8 -0.1 10 317-326 285-294 (379)
169 3rfe_A Platelet glycoprotein I 48.0 8.2 0.00028 27.4 1.8 34 165-199 32-65 (130)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=3.6e-34 Score=270.40 Aligned_cols=362 Identities=24% Similarity=0.355 Sum_probs=190.9
Q ss_pred CccccccCCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhcccceeeeccCCCchHHHHHHHHhCCCceEeeecCcee
Q 016845 3 GHDRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGASGSPDLFVKLLSRRFANVKSIHIDERLS 82 (381)
Q Consensus 3 ~~~~i~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (381)
+.|.++ .||+||+.+||+||+..+|++++++|||+|+++....+..+.+..... .....+..++++++.+.+.....
T Consensus 2 ~~d~~~-~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~ 78 (594)
T 2p1m_B 2 QKRIAL-SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYA--VSPATVIRRFPKVRSVELKGKPH 78 (594)
T ss_dssp ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTS--SCHHHHHHHCTTCCEEEEECSCG
T ss_pred cccchh-hCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccc--cCHHHHHhhCCCceEEeccCCCc
Confidence 346666 899999999999999558999999999999999544444444433222 23346678899999999987543
Q ss_pred eecccccCCccCccccccccccceecc---ccCCCcccccccceeeChHHHHHHHhcCCCccEEecCCCCCCChHHHHHH
Q 016845 83 VSIPVQHGRRRGDQSKLSALQLHYLTK---KTGSEDGQFQSESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSL 159 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 159 (381)
......... .+.....+|.. .........++....+++..+..+.+.+++|++|++.+|..++..++..+
T Consensus 79 ~~~~~l~~~-------~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 151 (594)
T 2p1m_B 79 FADFNLVPD-------GWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI 151 (594)
T ss_dssp GGGGTCSCT-------TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH
T ss_pred hhhcccccc-------cccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH
Confidence 321100000 00000001100 01111122244445577777877776788999999988766777778888
Q ss_pred HHhCCCCCEEEeeccccChhH---HHHHHhhCCCCCeEeccCCC-CCChHHHHHHHhhcCcCccEEeccCCCCCC-----
Q 016845 160 AQKCIHLKSLDLQGCYVGDQG---LAAVGKVCNQLEDLNLRFCE-GLTDTGLVDLAHGCGKSLKSLGIAACVKIT----- 230 (381)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----- 230 (381)
..++++|++|++++|.+++.. +..+...+++|++|+++++. .+....+..+...+ ++|+.|++.+|..+.
T Consensus 152 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~l~~~ 230 (594)
T 2p1m_B 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC-PNLKSLKLNRAVPLEKLATL 230 (594)
T ss_dssp HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC-TTCCEEECCTTSCHHHHHHH
T ss_pred HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC-CCCcEEecCCCCcHHHHHHH
Confidence 778888888888877644322 22223344555555555543 23344444443333 455555554431110
Q ss_pred -----------------------------------------------HHHHHHHHhcCCCCCEEEcccCCCChhHHHHHH
Q 016845 231 -----------------------------------------------DVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVA 263 (381)
Q Consensus 231 -----------------------------------------------~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 263 (381)
...+..+...+++|++|+++++.+++..+..+.
T Consensus 231 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~ 310 (594)
T 2p1m_B 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL 310 (594)
T ss_dssp HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHH
T ss_pred HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHH
Confidence 001111112345555555555555555555555
Q ss_pred hcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEec--------cCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHH
Q 016845 264 QGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLAL--------YSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMG 335 (381)
Q Consensus 264 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l--------~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~ 335 (381)
..+++|+.|++..+ +.+..+..+...+++|++|++ .++..+++.++..+...+++|++|.+. |..+++..
T Consensus 311 ~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~ 388 (594)
T 2p1m_B 311 CQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAA 388 (594)
T ss_dssp TTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHH
T ss_pred hcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHH
Confidence 55556666665543 444444444444555555555 223344555555444445555555332 23445544
Q ss_pred HHHHHhcCCCCCEEecc-----CCCCCC----hHHHHHHHhcCCccceeEc
Q 016845 336 LEAIATGCKELTHLEIN-----GCHNIG----TMGLESIGKFCRYASFCRL 377 (381)
Q Consensus 336 l~~l~~~~~~L~~L~l~-----~c~~~~----~~~~~~l~~~~~~L~~l~l 377 (381)
+..+...+++|+.|++. +|..++ +.++..+...|++|+.|++
T Consensus 389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 44444445555555554 344444 3444444444444444444
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=3e-32 Score=257.12 Aligned_cols=364 Identities=21% Similarity=0.326 Sum_probs=195.6
Q ss_pred cCCCHHHHHHHHhcC-CChhhhhhHHHhhhhHHHhhhcccceeeeccCCCchHHHHHHHHhCCCceEeeecCceeeecc-
Q 016845 9 TCLPDEVILEIFRHL-DSKASRDACSLVCRRWLTLERLSRTTLRIGASGSPDLFVKLLSRRFANVKSIHIDERLSVSIP- 86 (381)
Q Consensus 9 ~~LP~eil~~If~~L-~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 86 (381)
..||+|||.+||+|| + .+|++++++|||+|+.+....+..+.+... .......+..++++++++++.+.......
T Consensus 14 ~~LPdeil~~I~~~L~~-~~d~~~~s~vck~W~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 90 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITD-PKDRDSASLVCRRWFKIDSETREHVTMALC--YTATPDRLSRRFPNLRSLKLKGKPRAAMFN 90 (592)
T ss_dssp CCCGGGTHHHHHTTCCC-HHHHHHHTTSCHHHHHHHHHHCCEEEESCG--GGSCHHHHHHHCTTCSEEEEECSCGGGGGT
T ss_pred CCCCHHHHHHHHHhcCC-HHHHHHHHHHhHHHHHhhhccccEEEEeec--cccChHHHHHhCCCCeEEEecCCcchhhcc
Confidence 379999999999999 6 799999999999999996544444443322 12345677889999999999765432211
Q ss_pred ---cccCCccCccc---cccccccceeccccC---------------CCcccccccce-eeChHHHHHHHhcCCCccEEe
Q 016845 87 ---VQHGRRRGDQS---KLSALQLHYLTKKTG---------------SEDGQFQSESY-YLSDSGLNALADGFSKLEKLS 144 (381)
Q Consensus 87 ---~~~~~~~~~~~---~~~~~~~~~~~~~~~---------------~~~~~~~l~~~-~~~~~~l~~l~~~~~~L~~L~ 144 (381)
..++....... ......+..+....+ .......+..+ .+++..+..+...|++|++|+
T Consensus 91 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~ 170 (592)
T 3ogk_B 91 LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170 (592)
T ss_dssp CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEE
T ss_pred cccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEE
Confidence 11110000000 000000111100000 00000011111 133344444444555555555
Q ss_pred cCCCCC--CChHHHHHHHHhCCCCCEEEeeccccC---hhHHHHHHhhCCCCCeEeccCCCCCCh---------------
Q 016845 145 LIWCSN--ISSLGLMSLAQKCIHLKSLDLQGCYVG---DQGLAAVGKVCNQLEDLNLRFCEGLTD--------------- 204 (381)
Q Consensus 145 l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~--------------- 204 (381)
+.++.. .....+..+...+++|++|+++++.++ ...+..+...+++|+.|++.++. +..
T Consensus 171 L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~ 249 (592)
T 3ogk_B 171 MEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFC 249 (592)
T ss_dssp CTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEE
T ss_pred CccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhc
Confidence 555421 111224444455566666666555543 34455555556667766666543 111
Q ss_pred ---------------------------------HHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEccc
Q 016845 205 ---------------------------------TGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDS 251 (381)
Q Consensus 205 ---------------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 251 (381)
..+..+...+ ++|++|++.+|. +++..+..+...+++|++|++.
T Consensus 250 l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~-~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~- 326 (592)
T 3ogk_B 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA-AQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR- 326 (592)
T ss_dssp ECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG-GGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-
T ss_pred ccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc-CCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-
Confidence 0001111112 355555555543 4554444444556666666665
Q ss_pred CCCChhHHHHHHhcCCCCcEEEee-----------cccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 016845 252 EFIHNKGVHAVAQGCPLLRVLKLQ-----------CINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKL 320 (381)
Q Consensus 252 ~~~~~~~~~~~~~~~~~L~~L~l~-----------~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 320 (381)
+.+.+.++..+...+++|+.|+++ ++.+++..+..+...+++|++|++ ++..+++.++..+...+++|
T Consensus 327 ~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L 405 (592)
T 3ogk_B 327 NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNL 405 (592)
T ss_dssp GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSC
T ss_pred CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCC
Confidence 444455555555556666666665 455666655555555666666666 33456666666666556667
Q ss_pred CEEecc---CCCCCCH----HHHHHHHhcCCCCCEEeccCCCC-CChHHHHHHHhcCCccceeEcccC
Q 016845 321 KNLTLS---DCYFLSD----MGLEAIATGCKELTHLEINGCHN-IGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 321 ~~L~l~---~~~~i~~----~~l~~l~~~~~~L~~L~l~~c~~-~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
++|+++ .|+.+++ .++..+..+|++|+.|++++|.+ +++.++..+...||+|++|++..+
T Consensus 406 ~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 776665 2344554 45666666677777777766543 566677777777777777777654
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=100.00 E-value=1.7e-32 Score=240.42 Aligned_cols=286 Identities=21% Similarity=0.314 Sum_probs=177.3
Q ss_pred ccccCCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhcccceeeeccCCCchHHHHHHHHhC--CCceEeeecCceee
Q 016845 6 RINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGASGSPDLFVKLLSRRF--ANVKSIHIDERLSV 83 (381)
Q Consensus 6 ~i~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~ 83 (381)
.++ +||+||+.+||+||+ .+|+++++.|||+|++++..+..|.++++...... .....+. ++++.+.+......
T Consensus 8 ~~~-~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~ 83 (336)
T 2ast_B 8 SWD-SLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMD 83 (336)
T ss_dssp CSS-SSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEEC
T ss_pred Chh-hCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCchhheeeccccccCC--HHHHHhhhhccceEEEcCCcccc
Confidence 355 899999999999999 68999999999999999988878888877654111 1122222 45556555432111
Q ss_pred ecccccCCccCccccccccccceeccccCCCcccccccceeeChHHHHHHHhcCCCccEEecCCCCCCChHHHHHHHHhC
Q 016845 84 SIPVQHGRRRGDQSKLSALQLHYLTKKTGSEDGQFQSESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKC 163 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 163 (381)
.. ... ...+++|++|+++++ .++...+......+
T Consensus 84 ~~---------------------------------------~~~------~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~ 117 (336)
T 2ast_B 84 QP---------------------------------------LAE------HFSPFRVQHMDLSNS-VIEVSTLHGILSQC 117 (336)
T ss_dssp SC---------------------------------------CCS------CCCCBCCCEEECTTC-EECHHHHHHHHTTB
T ss_pred cc---------------------------------------chh------hccCCCCCEEEccCC-CcCHHHHHHHHhhC
Confidence 00 000 013577777777775 46666566666677
Q ss_pred CCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCC-
Q 016845 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK- 242 (381)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~- 242 (381)
++|++|++++|.+++.....+.. +++|++|++++|..+++.++......+ ++|+.|++.+|..+++..+......+|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred CCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcC-CCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 77777777777776655555443 677777777776556665555555554 667777777655566555555555666
Q ss_pred CCCEEEcccC--CCChhHHHHHHhcCCCCcEEEeeccc-CCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 016845 243 SLETLSLDSE--FIHNKGVHAVAQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKK 319 (381)
Q Consensus 243 ~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 319 (381)
+|++|++++| .+++..+...+..+++|+.|+++.+. +++..+..+. .+++|++|++++|..+++.++..+.. +++
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~ 273 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGE-IPT 273 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGG-CTT
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhc-CCC
Confidence 6777777666 45555555555556666666666544 4444444333 45666666666665555554433332 666
Q ss_pred CCEEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 320 LKNLTLSDCYFLSDMGLEAIATGCKELT 347 (381)
Q Consensus 320 L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 347 (381)
|++|++++| ++++.+..+...+++|+
T Consensus 274 L~~L~l~~~--i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 274 LKTLQVFGI--VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp CCEEECTTS--SCTTCHHHHHHHSTTSE
T ss_pred CCEEeccCc--cCHHHHHHHHhhCcceE
Confidence 666666665 55555555554444444
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=1.2e-22 Score=191.52 Aligned_cols=235 Identities=26% Similarity=0.436 Sum_probs=118.2
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccC----------CCCCChH
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRF----------CEGLTDT 205 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~~~~~ 205 (381)
.+++|++|++.++. ++...+..+...+++|++|++. +.+.+..+..+...+++|++|++.+ |..+++.
T Consensus 291 ~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 291 FAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred hcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 34455555555543 4444444444455555555555 3344444444444555555555553 4445554
Q ss_pred HHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcc----cCCCCh----hHHHHHHhcCCCCcEEEeec-
Q 016845 206 GLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLD----SEFIHN----KGVHAVAQGCPLLRVLKLQC- 276 (381)
Q Consensus 206 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~----~~~~~~----~~~~~~~~~~~~L~~L~l~~- 276 (381)
++..+...+ ++|+.|++ +|..+++..+..+...+++|++|++. .+.+++ .++..+...+++|+.|+++.
T Consensus 369 ~~~~l~~~~-~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 369 GLIALAQGC-QELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp HHHHHHHHC-TTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHhhC-ccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 444444444 45555555 23445555555554445555555553 223332 23444444555555555541
Q ss_pred -ccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 277 -INVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCH 355 (381)
Q Consensus 277 -~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 355 (381)
+.+++..+..+...+++|++|+++++. +++.++..+..++++|++|++++|. +++.++..+...+++|+.|++++|.
T Consensus 447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp GGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 124555555554445555555555432 5555555555555555555555554 5555555555555555555555553
Q ss_pred CCChHHHHHHHhcCCccceeEc
Q 016845 356 NIGTMGLESIGKFCRYASFCRL 377 (381)
Q Consensus 356 ~~~~~~~~~l~~~~~~L~~l~l 377 (381)
+++.++..+.+.+|.++...+
T Consensus 525 -it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 525 -ASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp -CCTTCTTGGGGCCTTEEEEEE
T ss_pred -CCHHHHHHHHHhCCCcEEEEe
Confidence 555555555555555554433
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=6e-22 Score=186.91 Aligned_cols=209 Identities=26% Similarity=0.344 Sum_probs=100.9
Q ss_pred CCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEec--------cCCCCCCHHHHH
Q 016845 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGI--------AACVKITDVSLE 235 (381)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l--------~~~~~~~~~~~~ 235 (381)
++|++|++++|.+++..+..+...+++|++|++.++ +.+.++..+...+ ++|+.|++ .++..+++..+.
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~-~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTC-KDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHC-TTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhC-CCCCEEEEecCcccccccCCCCCHHHHH
Confidence 344444444444443333333334444444444443 2333333333333 44555554 223344444444
Q ss_pred HHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEee--c----ccCC----HHHHHHHHhcCCCCCeEeccCCCCC
Q 016845 236 AVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQ--C----INVT----DEALVAVGNQCLSLELLALYSFQQF 305 (381)
Q Consensus 236 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~~~~----~~~l~~l~~~~~~L~~L~l~~~~~~ 305 (381)
.+...+++|+.|.+..+.+++.++..+...+++|+.|+++ . +.++ +..+..+...+++|++|++++ .+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l 443 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LL 443 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cc
Confidence 4444455555554444445444444444445555555554 1 3333 334444444455555555543 34
Q ss_pred CHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEccc
Q 016845 306 TDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNL 379 (381)
Q Consensus 306 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~ 379 (381)
++.++..+...+++|+.|++++|. +++.++..+..+|++|+.|++++|.. ++.++..+...+|+|+.|++..
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEES
T ss_pred cHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeC
Confidence 555555554445555555555543 55555555555566666666666543 5555555555556666665543
No 6
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.5e-20 Score=161.42 Aligned_cols=237 Identities=18% Similarity=0.223 Sum_probs=190.5
Q ss_pred eChHHHHHHHhcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCCh
Q 016845 125 LSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTD 204 (381)
Q Consensus 125 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 204 (381)
+.+..+..+.. ++++.|++.+.. ++... .. ...+++|++|+++++.+++..+......+++|++|+++++. +.+
T Consensus 59 ~~~~~~~~~~~--~~l~~L~l~~n~-l~~~~-~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~ 132 (336)
T 2ast_B 59 LHPDVTGRLLS--QGVIAFRCPRSF-MDQPL-AE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSD 132 (336)
T ss_dssp CCHHHHHHHHH--TTCSEEECTTCE-ECSCC-CS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCH
T ss_pred CCHHHHHhhhh--ccceEEEcCCcc-ccccc-hh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCH
Confidence 44445444432 789999998752 22111 11 23679999999999999887788888889999999999886 776
Q ss_pred HHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccC-CCChhHHHHHHhcCC-CCcEEEeecc--cCC
Q 016845 205 TGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSE-FIHNKGVHAVAQGCP-LLRVLKLQCI--NVT 280 (381)
Q Consensus 205 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~-~L~~L~l~~~--~~~ 280 (381)
.....+.. + ++|+.|++.+|..+++..+..+...+++|++|++++| .+++.++...+..++ +|+.|+++++ .++
T Consensus 133 ~~~~~l~~-~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~ 210 (336)
T 2ast_B 133 PIVNTLAK-N-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 210 (336)
T ss_dssp HHHHHHTT-C-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred HHHHHHhc-C-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC
Confidence 65555543 4 8999999999878888778777789999999999999 899887888888899 9999999877 688
Q ss_pred HHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChH
Q 016845 281 DEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTM 360 (381)
Q Consensus 281 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~ 360 (381)
+..+......+++|++|+++++..+++..+..+. .+++|++|++++|..+++.++..+. .+++|+.|++++| ++++
T Consensus 211 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~--i~~~ 286 (336)
T 2ast_B 211 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDG 286 (336)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTT
T ss_pred HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc--cCHH
Confidence 7777777778999999999998767777776665 4899999999999878888775554 5999999999998 8888
Q ss_pred HHHHHHhcCCccc
Q 016845 361 GLESIGKFCRYAS 373 (381)
Q Consensus 361 ~~~~l~~~~~~L~ 373 (381)
++..+.+.+|+|+
T Consensus 287 ~~~~l~~~l~~L~ 299 (336)
T 2ast_B 287 TLQLLKEALPHLQ 299 (336)
T ss_dssp CHHHHHHHSTTSE
T ss_pred HHHHHHhhCcceE
Confidence 8888887777776
No 7
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=6.5e-19 Score=160.92 Aligned_cols=239 Identities=23% Similarity=0.288 Sum_probs=116.8
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCC----CCCEEEeeccccChhH---HHHHHhhCCCCCeEeccCCCCCChHHHH
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCI----HLKSLDLQGCYVGDQG---LAAVGKVCNQLEDLNLRFCEGLTDTGLV 208 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 208 (381)
.+++|++|+++++ .+++..+..+...++ +|++|++++|.+++.+ +......+++|++|+++++. +.+.+..
T Consensus 54 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~ 131 (461)
T 1z7x_W 54 VNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQ 131 (461)
T ss_dssp TCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHH
T ss_pred hCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHH
Confidence 3455555555553 344444444444444 4555555555555432 22223345555666655544 4443333
Q ss_pred HHHhhc---CcCccEEeccCCCCCCHHHHH---HHHhcCCCCCEEEcccCCCChhHHHHHHh----cCCCCcEEEeeccc
Q 016845 209 DLAHGC---GKSLKSLGIAACVKITDVSLE---AVGSHCKSLETLSLDSEFIHNKGVHAVAQ----GCPLLRVLKLQCIN 278 (381)
Q Consensus 209 ~~~~~~---~~~L~~L~l~~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~ 278 (381)
.+.... .++|++|++.+| .+++.... .....+++|++|++++|.+.+.+...+.. ..++|+.|+++.+.
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 333211 124666666554 33333221 22234556666666665555544443332 23456666665555
Q ss_pred CCHHHH---HHHHhcCCCCCeEeccCCCCCCHHHHHHHHh----cCCCCCEEeccCCCCCCHHHHHHH---HhcCCCCCE
Q 016845 279 VTDEAL---VAVGNQCLSLELLALYSFQQFTDKGLHAVGK----GCKKLKNLTLSDCYFLSDMGLEAI---ATGCKELTH 348 (381)
Q Consensus 279 ~~~~~l---~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~i~~~~l~~l---~~~~~~L~~ 348 (381)
+++... ......+++|++|+++++ .+++.++..+.. .+++|++|++++| .+++.+...+ +..+++|+.
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCE
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcce
Confidence 544322 222224566666666664 355544443332 3566666666665 3565543322 334666666
Q ss_pred EeccCCCCCChHHHHHHHhc----CCccceeEcccC
Q 016845 349 LEINGCHNIGTMGLESIGKF----CRYASFCRLNLN 380 (381)
Q Consensus 349 L~l~~c~~~~~~~~~~l~~~----~~~L~~l~l~~~ 380 (381)
|+++++ .+++.+...+.+. .++|++|++..+
T Consensus 289 L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 289 LSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp EECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred EECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 666664 4555544444332 246666666543
No 8
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=9.3e-18 Score=153.25 Aligned_cols=254 Identities=22% Similarity=0.297 Sum_probs=190.4
Q ss_pred ccceeeChHHHHHHHhcCC----CccEEecCCCCCCChH---HHHHHHHhCCCCCEEEeeccccChhHHHHHHhh----C
Q 016845 120 SESYYLSDSGLNALADGFS----KLEKLSLIWCSNISSL---GLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKV----C 188 (381)
Q Consensus 120 l~~~~~~~~~l~~l~~~~~----~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~ 188 (381)
+....+.+.....+...++ +|++|+++++ .+++. .+...+..+++|++|+++++.+++.+...+... .
T Consensus 63 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred CCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 3344456666777777666 7999999987 56653 455556678999999999999987777666543 4
Q ss_pred CCCCeEeccCCCCCChHHHH---HHHhhcCcCccEEeccCCCCCCHHHHHHHHh----cCCCCCEEEcccCCCChhHH--
Q 016845 189 NQLEDLNLRFCEGLTDTGLV---DLAHGCGKSLKSLGIAACVKITDVSLEAVGS----HCKSLETLSLDSEFIHNKGV-- 259 (381)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~-- 259 (381)
++|++|+++++. ++..+.. .....+ ++|++|+++++ .+++.....+.. ..++|++|++++|.+++.+.
T Consensus 142 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~-~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 142 CRLEKLQLEYCS-LSAASCEPLASVLRAK-PDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHHHHHHC-TTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred CcceEEECCCCC-CCHHHHHHHHHHHhhC-CCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 579999999886 6655433 333444 79999999996 466666655543 46799999999999887663
Q ss_pred -HHHHhcCCCCcEEEeecccCCHHHHHHHHh----cCCCCCeEeccCCCCCCHHHHHHH---HhcCCCCCEEeccCCCCC
Q 016845 260 -HAVAQGCPLLRVLKLQCINVTDEALVAVGN----QCLSLELLALYSFQQFTDKGLHAV---GKGCKKLKNLTLSDCYFL 331 (381)
Q Consensus 260 -~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~i 331 (381)
...+..+++|++|+++.+.+.+..+..+.. .+++|++|+++++ .+++.++..+ ...+++|++|+++++ .+
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i 296 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-EL 296 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CC
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CC
Confidence 344456899999999988888876655543 4789999999997 5887764443 345899999999997 58
Q ss_pred CHHHHHHHHhc----CCCCCEEeccCCCCCChHH---HHHHHhcCCccceeEcccC
Q 016845 332 SDMGLEAIATG----CKELTHLEINGCHNIGTMG---LESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 332 ~~~~l~~l~~~----~~~L~~L~l~~c~~~~~~~---~~~l~~~~~~L~~l~l~~~ 380 (381)
++.+...+... .++|+.|++++|. ++..+ +......+++|++|+++.+
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC
Confidence 88877766653 3699999999985 66554 4455567899999999865
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=4.4e-17 Score=145.09 Aligned_cols=253 Identities=18% Similarity=0.148 Sum_probs=118.0
Q ss_pred cccceeeChHHHHHHH---hcCCCccEEecCCCC--CCC---hHHHH---HHHHhCCCCCEEEeeccccChhH---HHHH
Q 016845 119 QSESYYLSDSGLNALA---DGFSKLEKLSLIWCS--NIS---SLGLM---SLAQKCIHLKSLDLQGCYVGDQG---LAAV 184 (381)
Q Consensus 119 ~l~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~--~~~---~~~~~---~~~~~~~~L~~L~l~~~~~~~~~---~~~~ 184 (381)
++....+++.....+. ..+++|+.|+++++. .++ +..+. ..+..+++|++|+|+++.+++.+ +...
T Consensus 38 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 117 (386)
T 2ca6_A 38 VLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117 (386)
T ss_dssp ECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHH
Confidence 3334444444443332 235566666665541 111 11222 22234566666666666655432 2222
Q ss_pred HhhCCCCCeEeccCCCCCChHHHHHHHhh--cC---------cCccEEeccCCCCCCHHHHHH---HHhcCCCCCEEEcc
Q 016845 185 GKVCNQLEDLNLRFCEGLTDTGLVDLAHG--CG---------KSLKSLGIAACVKITDVSLEA---VGSHCKSLETLSLD 250 (381)
Q Consensus 185 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~---------~~L~~L~l~~~~~~~~~~~~~---l~~~~~~L~~L~l~ 250 (381)
...+++|++|+++++. +...+...+... .. ++|+.|+++++ .+++..+.. ....+++|++|+++
T Consensus 118 l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~ 195 (386)
T 2ca6_A 118 LSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMV 195 (386)
T ss_dssp HHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECc
Confidence 3345666666666554 333222222110 00 45666666653 344333332 22355666666666
Q ss_pred cCCCChhHHHHHH----hcCCCCcEEEeecccCCHHHHHH---HHhcCCCCCeEeccCCCCCCHHHHHHHHhc-----CC
Q 016845 251 SEFIHNKGVHAVA----QGCPLLRVLKLQCINVTDEALVA---VGNQCLSLELLALYSFQQFTDKGLHAVGKG-----CK 318 (381)
Q Consensus 251 ~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~l~~---l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-----~~ 318 (381)
+|.+++.++..+. ..+++|+.|+++.+.+++.+... ....+++|++|+++++. +++.+...+... ++
T Consensus 196 ~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~ 274 (386)
T 2ca6_A 196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENI 274 (386)
T ss_dssp SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSC
T ss_pred CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCC
Confidence 6666555433322 24556666666655555432222 22345666666666543 554443333221 55
Q ss_pred CCCEEeccCCCCCCHHHHHHHH----hcCCCCCEEeccCCCCCChHH--HHHHHhcCCccceeE
Q 016845 319 KLKNLTLSDCYFLSDMGLEAIA----TGCKELTHLEINGCHNIGTMG--LESIGKFCRYASFCR 376 (381)
Q Consensus 319 ~L~~L~l~~~~~i~~~~l~~l~----~~~~~L~~L~l~~c~~~~~~~--~~~l~~~~~~L~~l~ 376 (381)
+|++|++++|. +++.++..+. .++++|+.|++++|+ ++..+ +..+.+.+|+++.++
T Consensus 275 ~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~ 336 (386)
T 2ca6_A 275 GLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGE 336 (386)
T ss_dssp CCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCE
T ss_pred CeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcch
Confidence 66666666643 5554332222 335666666666643 33332 444444445544433
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=7.3e-17 Score=143.68 Aligned_cols=239 Identities=20% Similarity=0.216 Sum_probs=174.8
Q ss_pred hcCCCccEEecCCCCCCChHHHHHH---HHhCCCCCEEEeeccccC---h---hHHHHH---HhhCCCCCeEeccCCCCC
Q 016845 135 DGFSKLEKLSLIWCSNISSLGLMSL---AQKCIHLKSLDLQGCYVG---D---QGLAAV---GKVCNQLEDLNLRFCEGL 202 (381)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~---~---~~~~~~---~~~~~~L~~L~l~~~~~~ 202 (381)
..+++|++|+++++ .++......+ +..+++|++|+|+++.+. + .++..+ ...+++|++|+++++. +
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l 106 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-F 106 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-C
Confidence 45899999999987 6777665554 346899999999997543 2 223222 3467999999999876 5
Q ss_pred ChHH---HHHHHhhcCcCccEEeccCCCCCCHHHHHHHHh---cC---------CCCCEEEcccCCCChhHHHH---HHh
Q 016845 203 TDTG---LVDLAHGCGKSLKSLGIAACVKITDVSLEAVGS---HC---------KSLETLSLDSEFIHNKGVHA---VAQ 264 (381)
Q Consensus 203 ~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~---------~~L~~L~l~~~~~~~~~~~~---~~~ 264 (381)
...+ +......+ ++|+.|++++| .+++.....+.. .+ ++|++|++++|.+++.++.. .+.
T Consensus 107 ~~~~~~~l~~~l~~~-~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKH-TPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CTTTHHHHHHHHHHC-TTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-CCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 5543 33333444 89999999996 455544444332 33 99999999999998766663 445
Q ss_pred cCCCCcEEEeecccCCHHHHHHHHh----cCCCCCeEeccCCCCCCHHHHHHH---HhcCCCCCEEeccCCCCCCHHHHH
Q 016845 265 GCPLLRVLKLQCINVTDEALVAVGN----QCLSLELLALYSFQQFTDKGLHAV---GKGCKKLKNLTLSDCYFLSDMGLE 337 (381)
Q Consensus 265 ~~~~L~~L~l~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~i~~~~l~ 337 (381)
.+++|+.|+++.+.+.+.++..+.. .+++|++|+++++. +++.+...+ ...+++|++|++++|. +++.+..
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~ 262 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAA 262 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHH
Confidence 7899999999999999876554443 78999999999864 776554443 4568999999999975 8887666
Q ss_pred HHHhc-----CCCCCEEeccCCCCCChHHHH----HHHhcCCccceeEcccC
Q 016845 338 AIATG-----CKELTHLEINGCHNIGTMGLE----SIGKFCRYASFCRLNLN 380 (381)
Q Consensus 338 ~l~~~-----~~~L~~L~l~~c~~~~~~~~~----~l~~~~~~L~~l~l~~~ 380 (381)
.+... +++|+.|++++| .++..++. .+...+|+|++|++..|
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 55442 899999999996 57775433 33356899999999875
No 11
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=1.2e-15 Score=134.60 Aligned_cols=242 Identities=17% Similarity=0.114 Sum_probs=151.2
Q ss_pred HHhcCCCccEEecCCCCCCCh---HHHHHHHHhCC-CCCEEEeeccccChhHHHHHHh---h-CCCCCeEeccCCCCCCh
Q 016845 133 LADGFSKLEKLSLIWCSNISS---LGLMSLAQKCI-HLKSLDLQGCYVGDQGLAAVGK---V-CNQLEDLNLRFCEGLTD 204 (381)
Q Consensus 133 l~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~---~-~~~L~~L~l~~~~~~~~ 204 (381)
+....++|++|+++++. +++ ..+...+..++ +|++|+|++|.+++.....+.. . +++|++|+++++. +++
T Consensus 17 ~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~ 94 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSY 94 (362)
T ss_dssp HHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGG
T ss_pred HHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CCh
Confidence 34445568999988763 433 33445555677 8999999988877654444433 2 3789999998876 443
Q ss_pred HH---HHHHHhhcCcCccEEeccCCCCCCHHHHHHHH---hc-CCCCCEEEcccCCCChhHHHHH---HhcCC-CCcEEE
Q 016845 205 TG---LVDLAHGCGKSLKSLGIAACVKITDVSLEAVG---SH-CKSLETLSLDSEFIHNKGVHAV---AQGCP-LLRVLK 273 (381)
Q Consensus 205 ~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~-~~~L~~L~l~~~~~~~~~~~~~---~~~~~-~L~~L~ 273 (381)
.+ +........++|+.|+++++ .+++.....+. .. .++|++|++++|.+++.+...+ +...+ +|+.|+
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 33 33333333258899998885 34444443332 23 3588999998888776554433 33444 899999
Q ss_pred eecccCCHHH---HHHHHhcC-CCCCeEeccCCCCCCHHHHHHHH----hcCCCCCEEeccCCCCCCH---HHHHHHHhc
Q 016845 274 LQCINVTDEA---LVAVGNQC-LSLELLALYSFQQFTDKGLHAVG----KGCKKLKNLTLSDCYFLSD---MGLEAIATG 342 (381)
Q Consensus 274 l~~~~~~~~~---l~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~i~~---~~l~~l~~~ 342 (381)
++.+.+++.. +......+ ++|++|+++++. +++.++..+. ...++|++|+++++ .+++ ..+..+...
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDS 251 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTT
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhc
Confidence 8877765432 33333345 489999998854 5554333222 22468999999886 3665 444555566
Q ss_pred CCCCCEEeccCCC--CCChHHHHHHHhcCCc---cceeEccc
Q 016845 343 CKELTHLEINGCH--NIGTMGLESIGKFCRY---ASFCRLNL 379 (381)
Q Consensus 343 ~~~L~~L~l~~c~--~~~~~~~~~l~~~~~~---L~~l~l~~ 379 (381)
+++|+.|++++|. .++..++..+.+.+++ |+.|+++.
T Consensus 252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 7889999998864 4677777776655554 44455544
No 12
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=4.9e-14 Score=124.15 Aligned_cols=224 Identities=13% Similarity=0.124 Sum_probs=150.9
Q ss_pred HHHhcCC-CccEEecCCCCCCCh---HHHHHHHHhC-CCCCEEEeeccccChhHHHHHH---hhC-CCCCeEeccCCCCC
Q 016845 132 ALADGFS-KLEKLSLIWCSNISS---LGLMSLAQKC-IHLKSLDLQGCYVGDQGLAAVG---KVC-NQLEDLNLRFCEGL 202 (381)
Q Consensus 132 ~l~~~~~-~L~~L~l~~~~~~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~---~~~-~~L~~L~l~~~~~~ 202 (381)
.....++ +|++|+++++ .+++ ..+....... ++|++|+|++|.+++.....+. ..+ ++|++|+++++. +
T Consensus 44 ~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l 121 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-F 121 (362)
T ss_dssp HHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-G
T ss_pred HHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-C
Confidence 3444577 8999999987 4443 3444444444 8999999999998765444333 334 799999999876 5
Q ss_pred ChHHHHHHHh---hcCcCccEEeccCCCCCCHHHHHHH---HhcCC-CCCEEEcccCCCChhHHH---HHHhcC-CCCcE
Q 016845 203 TDTGLVDLAH---GCGKSLKSLGIAACVKITDVSLEAV---GSHCK-SLETLSLDSEFIHNKGVH---AVAQGC-PLLRV 271 (381)
Q Consensus 203 ~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~-~L~~L~l~~~~~~~~~~~---~~~~~~-~~L~~ 271 (381)
++.+...+.. ...++|+.|+++++ .+++.+...+ ....+ +|++|++++|.+++.+.. ..+..+ ++|+.
T Consensus 122 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 200 (362)
T 3goz_A 122 SSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS 200 (362)
T ss_dssp GGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred CcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCE
Confidence 5544444332 21258999999985 5554333333 23455 899999999987665543 344456 49999
Q ss_pred EEeecccCCHHHHH----HHHhcCCCCCeEeccCCCCCCHH---HHHHHHhcCCCCCEEeccCCC--CCCHHHHHHHHhc
Q 016845 272 LKLQCINVTDEALV----AVGNQCLSLELLALYSFQQFTDK---GLHAVGKGCKKLKNLTLSDCY--FLSDMGLEAIATG 342 (381)
Q Consensus 272 L~l~~~~~~~~~l~----~l~~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~--~i~~~~l~~l~~~ 342 (381)
|+++.+.+.+.+.. .+....++|++|+++++ .+++. .+..+...+++|+.|++++|. .+++..+..+...
T Consensus 201 L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~ 279 (362)
T 3goz_A 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT
T ss_pred EECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH
Confidence 99998888763332 23323469999999986 46654 344445668999999999873 4777777777664
Q ss_pred ---CCCCCEEeccCCCCCChH
Q 016845 343 ---CKELTHLEINGCHNIGTM 360 (381)
Q Consensus 343 ---~~~L~~L~l~~c~~~~~~ 360 (381)
+++|+.|+++++ .+.+.
T Consensus 280 ~~~l~~L~~LdL~~N-~l~~~ 299 (362)
T 3goz_A 280 FPNIQKIILVDKNGK-EIHPS 299 (362)
T ss_dssp STTCCEEEEECTTSC-BCCGG
T ss_pred hccCCceEEEecCCC-cCCCc
Confidence 456777888885 45544
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.60 E-value=1.9e-14 Score=126.13 Aligned_cols=214 Identities=21% Similarity=0.178 Sum_probs=133.9
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|++.++...... .. ...+++|++|+++++.+..... ...+++|+.|+++++. +..... ... .
T Consensus 130 ~l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~---~~~-l 198 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDL--SP-LSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQ-IEDISP---LAS-L 198 (347)
T ss_dssp TCTTCCEEECTTCTTCCCC--GG-GTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSC-CCCCGG---GGG-C
T ss_pred cCCceeEEECCCCCCcccc--cc-hhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCc-cccccc---ccC-C
Confidence 4566677776665332211 11 3456777777777776554322 3456778888777665 322111 222 2
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|++.++. +.+... ...+++|++|++++|.+..... +..+++|+.|+++.+.+... .. ...+++|+
T Consensus 199 ~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~ 268 (347)
T 4fmz_A 199 TSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDI--NA-VKDLTKLK 268 (347)
T ss_dssp TTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCC
T ss_pred CccceeecccCC-CCCCch---hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCC--hh-HhcCCCcC
Confidence 678888877753 222211 3577888888888887665432 55678888888887766542 22 23678899
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCcccee
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFC 375 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l 375 (381)
+|+++++. +++. .....+++|+.|++++|. +++.....+ ..+++|+.|++++|+ ++... . ...+++|+.|
T Consensus 269 ~L~l~~n~-l~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L 338 (347)
T 4fmz_A 269 MLNVGSNQ-ISDI---SVLNNLSQLNSLFLNNNQ-LGNEDMEVI-GGLTNLTTLFLSQNH-ITDIR--P-LASLSKMDSA 338 (347)
T ss_dssp EEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCGGGHHHH-HTCTTCSEEECCSSS-CCCCG--G-GGGCTTCSEE
T ss_pred EEEccCCc-cCCC---hhhcCCCCCCEEECcCCc-CCCcChhHh-hccccCCEEEccCCc-ccccc--C-hhhhhcccee
Confidence 99998864 4332 123458889999999874 665544444 458999999999875 43321 1 5578999998
Q ss_pred EcccC
Q 016845 376 RLNLN 380 (381)
Q Consensus 376 ~l~~~ 380 (381)
++..+
T Consensus 339 ~l~~N 343 (347)
T 4fmz_A 339 DFANQ 343 (347)
T ss_dssp SSSCC
T ss_pred ehhhh
Confidence 88765
No 14
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.55 E-value=7.9e-15 Score=112.41 Aligned_cols=106 Identities=10% Similarity=0.108 Sum_probs=93.1
Q ss_pred CCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhc---CCCCCEEeccCCCCCCHHHHHHHHhcC
Q 016845 267 PLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKG---CKKLKNLTLSDCYFLSDMGLEAIATGC 343 (381)
Q Consensus 267 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~i~~~~l~~l~~~~ 343 (381)
.+|++|+++.+.+++.++..+. .|++|++|+|++|..++|.++..+... +++|++|++++|.+|||.++..+. .|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 3688999987778888887774 799999999999999999999999873 578999999999999999999986 59
Q ss_pred CCCCEEeccCCCCCChHH--HHHHHhcCCccce
Q 016845 344 KELTHLEINGCHNIGTMG--LESIGKFCRYASF 374 (381)
Q Consensus 344 ~~L~~L~l~~c~~~~~~~--~~~l~~~~~~L~~ 374 (381)
++|+.|++++|+.+++.+ +..+.+..|+++.
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 999999999999999875 5778888898775
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.51 E-value=3.3e-13 Score=118.26 Aligned_cols=214 Identities=18% Similarity=0.114 Sum_probs=146.3
Q ss_pred HhcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhh
Q 016845 134 ADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHG 213 (381)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 213 (381)
...+++|+.|++.++ .++.. . ....+++|++|+++++.+.+... ...+++|+.|+++++........ ...
T Consensus 84 ~~~l~~L~~L~L~~n-~i~~~--~-~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~ 153 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTN-KITDI--S-ALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSP---LSN 153 (347)
T ss_dssp GTTCTTCCEEECCSS-CCCCC--G-GGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTT
T ss_pred hhcCCcCCEEEccCC-cccCc--h-HHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccc---hhh
Confidence 345788899988876 33331 1 24578889999998888765322 44678899999988754443221 222
Q ss_pred cCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCC
Q 016845 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLS 293 (381)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 293 (381)
+ ++|+.|++.++.-..... ...+++|+.|++++|.+..... +..+++|+.|+++.+.+.+... ...+++
T Consensus 154 l-~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~~~~ 222 (347)
T 4fmz_A 154 M-TGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITP---VANMTR 222 (347)
T ss_dssp C-TTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GGGCTT
T ss_pred C-CCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCch---hhcCCc
Confidence 3 789999998864322222 3578999999999887765332 4568899999998777654322 346889
Q ss_pred CCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccc
Q 016845 294 LELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYAS 373 (381)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~ 373 (381)
|++|+++++. +++... ...+++|++|++++|. +++- .....+++|+.|++++| .++.. . ....+++|+
T Consensus 223 L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~ 290 (347)
T 4fmz_A 223 LNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTNQ-ISDI---NAVKDLTKLKMLNVGSN-QISDI--S-VLNNLSQLN 290 (347)
T ss_dssp CCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCC---GGGTTCTTCCEEECCSS-CCCCC--G-GGGGCTTCS
T ss_pred CCEEEccCCc-cCCCcc---hhcCCCCCEEECCCCc-cCCC---hhHhcCCCcCEEEccCC-ccCCC--h-hhcCCCCCC
Confidence 9999998865 332221 4568999999999974 5542 22456899999999997 44442 2 346789999
Q ss_pred eeEcccC
Q 016845 374 FCRLNLN 380 (381)
Q Consensus 374 ~l~l~~~ 380 (381)
.|+++.+
T Consensus 291 ~L~L~~n 297 (347)
T 4fmz_A 291 SLFLNNN 297 (347)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 9998765
No 16
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=2.8e-12 Score=112.74 Aligned_cols=173 Identities=21% Similarity=0.257 Sum_probs=80.6
Q ss_pred CCccEEecCCCCCCChHHHHHHHHh----CCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhh
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQK----CIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHG 213 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 213 (381)
++|+.|+++++ .+++.....+... .++|++|+|++|.+++.+...+...+++|+.|+++++. +++.+...+...
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 45666666654 4554444333322 24566666666666655555555555556666666553 555444433221
Q ss_pred ---cCcCccEEeccCCCCCCHHHHHHHH---hcCCCCCEEEcccCCCChhHHHHHH---hcCCCCcEEEeecccCCHHHH
Q 016845 214 ---CGKSLKSLGIAACVKITDVSLEAVG---SHCKSLETLSLDSEFIHNKGVHAVA---QGCPLLRVLKLQCINVTDEAL 284 (381)
Q Consensus 214 ---~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~l 284 (381)
..++|+.|++++| .+++.+...+. ..+++|++|++++|.+++.+...+. ...++|+.|+++++.+++.+.
T Consensus 150 L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 1134555555553 34443333321 2345555555555555444433222 223445555555444444333
Q ss_pred HHHH---hcCCCCCeEeccCCCCCCHHHHHHHH
Q 016845 285 VAVG---NQCLSLELLALYSFQQFTDKGLHAVG 314 (381)
Q Consensus 285 ~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (381)
..+. ..+++|++|+++++ .+++.++..+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~ 260 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFN-ELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHH
Confidence 2222 12344555555443 24444444433
No 17
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=3.2e-12 Score=112.31 Aligned_cols=174 Identities=21% Similarity=0.238 Sum_probs=129.4
Q ss_pred CCCCCEEEeeccccChhHHHHHHhh----CCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHH
Q 016845 163 CIHLKSLDLQGCYVGDQGLAAVGKV----CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVG 238 (381)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 238 (381)
.++|++|+|++|.+++.....+... +++|++|+++++. +++.++..+.... ++|+.|++++| .+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L-~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVF-LRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHH-HTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHH-HhccHhhcCCC-CCCHHHHHHHH
Confidence 4789999999999887666555443 3589999999876 7777776666554 68999999985 67777766654
Q ss_pred h----cCCCCCEEEcccCCCChhHHHHHH---hcCCCCcEEEeecccCCHHHHHHHH---hcCCCCCeEeccCCCCCCHH
Q 016845 239 S----HCKSLETLSLDSEFIHNKGVHAVA---QGCPLLRVLKLQCINVTDEALVAVG---NQCLSLELLALYSFQQFTDK 308 (381)
Q Consensus 239 ~----~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~ 308 (381)
. ..++|++|++++|.+++.+...+. ...++|+.|+++.|.+.+.+...+. ...++|++|+++++ .+++.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 3 357899999999888876655543 4578899999988888876654443 35678999999885 47877
Q ss_pred HHHHHHh---cCCCCCEEeccCCCCCCHHHHHHHHh
Q 016845 309 GLHAVGK---GCKKLKNLTLSDCYFLSDMGLEAIAT 341 (381)
Q Consensus 309 ~~~~l~~---~~~~L~~L~l~~~~~i~~~~l~~l~~ 341 (381)
+...+.. ..++|++|++++| .+++.+...+..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~ 261 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFN-ELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHH
Confidence 6655543 4688999999886 488888887765
No 18
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.44 E-value=1.9e-15 Score=131.12 Aligned_cols=223 Identities=22% Similarity=0.224 Sum_probs=147.6
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
.++++.|++.++ .++ .+...+..+++|++|+|+++.+.. +......+++|++|+++++. +.. +....... +
T Consensus 80 ~~~l~~L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~-l~~--lp~~l~~l-~ 150 (328)
T 4fcg_A 80 QPGRVALELRSV-PLP--QFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNP-LRA--LPASIASL-N 150 (328)
T ss_dssp STTCCEEEEESS-CCS--SCCSCGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCC-CCC--CCGGGGGC-T
T ss_pred ccceeEEEccCC-Cch--hcChhhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCc-ccc--CcHHHhcC-c
Confidence 578999999875 333 223324468999999999998762 23333468899999999876 331 11122333 7
Q ss_pred CccEEeccCCCCCCHHHHHHH--------HhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHH
Q 016845 217 SLKSLGIAACVKITDVSLEAV--------GSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVG 288 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~ 288 (381)
+|+.|++++|....... ..+ ...+++|++|++++|.++. +...+..+++|+.|+++.+.+.. +....
T Consensus 151 ~L~~L~L~~n~~~~~~p-~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~N~l~~--l~~~l 225 (328)
T 4fcg_A 151 RLRELSIRACPELTELP-EPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLSA--LGPAI 225 (328)
T ss_dssp TCCEEEEEEETTCCCCC-SCSEEEC-CCCEEESTTCCEEEEEEECCCC--CCGGGGGCTTCCEEEEESSCCCC--CCGGG
T ss_pred CCCEEECCCCCCccccC-hhHhhccchhhhccCCCCCEEECcCCCcCc--chHhhcCCCCCCEEEccCCCCCc--Cchhh
Confidence 99999998864332211 011 1248999999999987763 22335678999999999877763 11123
Q ss_pred hcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhc
Q 016845 289 NQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKF 368 (381)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~ 368 (381)
..+++|++|+++++..... +......+++|++|++++|..... +..-+..+++|+.|++++|+..+. +..-...
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~--iP~~l~~ 299 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKLDLRGCVNLSR--LPSLIAQ 299 (328)
T ss_dssp GGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCB--CCTTGGGCTTCCEEECTTCTTCCC--CCGGGGG
T ss_pred ccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhh--cchhhhcCCCCCEEeCCCCCchhh--ccHHHhh
Confidence 4689999999998654331 111234589999999999864432 111245699999999999876543 3334557
Q ss_pred CCccceeEccc
Q 016845 369 CRYASFCRLNL 379 (381)
Q Consensus 369 ~~~L~~l~l~~ 379 (381)
+++|+.+.+..
T Consensus 300 L~~L~~l~l~~ 310 (328)
T 4fcg_A 300 LPANCIILVPP 310 (328)
T ss_dssp SCTTCEEECCG
T ss_pred ccCceEEeCCH
Confidence 89999887753
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.43 E-value=1.3e-12 Score=119.12 Aligned_cols=210 Identities=21% Similarity=0.191 Sum_probs=113.7
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
+++|+.|+++++. ++.. . ....+++|++|+++++.+.+... ...+++|+.|+++++. +.... . ... .+
T Consensus 176 l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~--~-l~~-l~ 243 (466)
T 1o6v_A 176 LTTLERLDISSNK-VSDI--S-VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQ-LKDIG--T-LAS-LT 243 (466)
T ss_dssp CTTCCEEECCSSC-CCCC--G-GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSC-CCCCG--G-GGG-CT
T ss_pred CCCCCEEECcCCc-CCCC--h-hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCC-cccch--h-hhc-CC
Confidence 4556666665542 2211 1 12355666666666665543221 2345666666666654 22211 1 112 25
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCe
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (381)
+|+.|++.++. +..... ...+++|+.|++++|.+..... +..+++|+.|+++.+.+.... . ...+++|+.
T Consensus 244 ~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~ 313 (466)
T 1o6v_A 244 NLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDIS--P-ISNLKNLTY 313 (466)
T ss_dssp TCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCG--G-GGGCTTCSE
T ss_pred CCCEEECCCCc-cccchh---hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCch--h-hcCCCCCCE
Confidence 67777776643 222111 2456777777777766554322 345677777777666554321 1 235677777
Q ss_pred EeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeE
Q 016845 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCR 376 (381)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~ 376 (381)
|+++++. +++... ...+++|+.|++++|. +++. . -...+++|+.|++++|. ++... . ...+++|+.|+
T Consensus 314 L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~ 381 (466)
T 1o6v_A 314 LTLYFNN-ISDISP---VSSLTKLQRLFFYNNK-VSDV--S-SLANLTNINWLSAGHNQ-ISDLT--P-LANLTRITQLG 381 (466)
T ss_dssp EECCSSC-CSCCGG---GGGCTTCCEEECCSSC-CCCC--G-GGTTCTTCCEEECCSSC-CCBCG--G-GTTCTTCCEEE
T ss_pred EECcCCc-CCCchh---hccCccCCEeECCCCc-cCCc--h-hhccCCCCCEEeCCCCc-cCccc--h-hhcCCCCCEEe
Confidence 7777754 332211 2357778888887763 4432 1 23457888888888764 33322 1 45678888887
Q ss_pred cccC
Q 016845 377 LNLN 380 (381)
Q Consensus 377 l~~~ 380 (381)
++.+
T Consensus 382 l~~n 385 (466)
T 1o6v_A 382 LNDQ 385 (466)
T ss_dssp CCCE
T ss_pred ccCC
Confidence 7643
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.41 E-value=4.2e-14 Score=128.80 Aligned_cols=131 Identities=18% Similarity=0.052 Sum_probs=73.3
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (381)
++|+.|+++++.+.... ...+..+++|+.|+++.+.+.......+ ..+++|++|+++++. ++.... .....+++|+
T Consensus 275 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~ 350 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALL-KSVFSHFTDLEQLTLAQNEINKIDDNAF-WGLTHLLKLNLSQNF-LGSIDS-RMFENLDKLE 350 (455)
T ss_dssp SCCCEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC-CCEECG-GGGTTCTTCC
T ss_pred cCceEEEecCccccccc-hhhcccCCCCCEEECCCCcccccChhHh-cCcccCCEEECCCCc-cCCcCh-hHhcCcccCC
Confidence 45666666666554321 1223456778888877666653221122 246778888887753 332211 1223477888
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 322 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
+|+++++. ++..... .+..+++|+.|+++++ .++... ......+++|+.|++..|
T Consensus 351 ~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 351 VLDLSYNH-IRALGDQ-SFLGLPNLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp EEECCSSC-CCEECTT-TTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred EEECCCCc-ccccChh-hccccccccEEECCCC-ccccCC-HhHhccCCcccEEEccCC
Confidence 88888763 4432111 1245788888888875 344321 123356788888887654
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.40 E-value=1.2e-14 Score=140.57 Aligned_cols=229 Identities=17% Similarity=0.168 Sum_probs=143.2
Q ss_pred hcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHH--HHhhCCCCCeEeccCCCCCChHHHHHHHh
Q 016845 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAA--VGKVCNQLEDLNLRFCEGLTDTGLVDLAH 212 (381)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 212 (381)
..+++|+.|+++++. +.......+..++++|++|+++++.+++..... ....+++|++|+++++........ .
T Consensus 123 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~ 197 (768)
T 3rgz_A 123 GSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----S 197 (768)
T ss_dssp GGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----T
T ss_pred hCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc----c
Confidence 347899999998752 211111111236788999999998876544333 245688999999987752211111 2
Q ss_pred hcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCC
Q 016845 213 GCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 292 (381)
Q Consensus 213 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~ 292 (381)
. .++|+.|++.++.- ... +.. ...+++|++|++++|.+.... ...+..+++|+.|+++.+.+...... ..++
T Consensus 198 ~-l~~L~~L~Ls~n~l-~~~-~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~l~ 269 (768)
T 3rgz_A 198 R-CVNLEFLDVSSNNF-STG-IPF-LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPP---LPLK 269 (768)
T ss_dssp T-CTTCCEEECCSSCC-CSC-CCB-CTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSSCCEESCCC---CCCT
T ss_pred c-CCcCCEEECcCCcC-CCC-Ccc-cccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECCCCcccCccCc---cccC
Confidence 2 37899999988632 221 111 357889999999998876543 33456789999999987665421110 1578
Q ss_pred CCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCcc
Q 016845 293 SLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYA 372 (381)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L 372 (381)
+|++|+++++. ++......+...+++|++|++++|. ++.. +...+..+++|+.|++++|. ++...-......+++|
T Consensus 270 ~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 270 SLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNH-FYGA-VPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGL 345 (768)
T ss_dssp TCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSE-EEEC-CCGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTC
T ss_pred CCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCc-CCCc-cchHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCC
Confidence 89999998864 2211111222336899999999874 3321 11224568999999999974 3322112234578999
Q ss_pred ceeEcccC
Q 016845 373 SFCRLNLN 380 (381)
Q Consensus 373 ~~l~l~~~ 380 (381)
++|++..+
T Consensus 346 ~~L~Ls~n 353 (768)
T 3rgz_A 346 KVLDLSFN 353 (768)
T ss_dssp CEEECCSS
T ss_pred CEEeCcCC
Confidence 99998765
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.38 E-value=3.7e-14 Score=129.17 Aligned_cols=234 Identities=18% Similarity=0.130 Sum_probs=117.0
Q ss_pred hcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHH-HHhhCCCCCeEeccCCCCCChHHHHHHHhh
Q 016845 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAA-VGKVCNQLEDLNLRFCEGLTDTGLVDLAHG 213 (381)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 213 (381)
..+++|+.|+++++. ++... ...+.++++|++|++++|.+++..+.. ....+++|++|+++++. +.......+...
T Consensus 76 ~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~ 152 (455)
T 3v47_A 76 RGLSSLIILKLDYNQ-FLQLE-TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLN 152 (455)
T ss_dssp TTCTTCCEEECTTCT-TCEEC-TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGG
T ss_pred cccccCCEEeCCCCc-cCccC-hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCC
Confidence 346778888887652 32211 112346778888888887776533322 13356788888887765 322111111222
Q ss_pred cCcCccEEeccCCCCCCHH---HHHHH------------------------------HhcCCCCCEEEcccCCCChhHHH
Q 016845 214 CGKSLKSLGIAACVKITDV---SLEAV------------------------------GSHCKSLETLSLDSEFIHNKGVH 260 (381)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~---~~~~l------------------------------~~~~~~L~~L~l~~~~~~~~~~~ 260 (381)
. ++|+.|++.++. +... .+..+ ...+++|++|++++|.+......
T Consensus 153 l-~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 153 M-RRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp C-TTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred C-CcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence 2 678888887742 1111 11000 01234566666666665543333
Q ss_pred HHHhc--------------------------------------CCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCC
Q 016845 261 AVAQG--------------------------------------CPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSF 302 (381)
Q Consensus 261 ~~~~~--------------------------------------~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 302 (381)
.+... .++|+.|+++.+.+....... ...+++|++|+++++
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQN 309 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT-TTTCTTCCEEECTTS
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh-cccCCCCCEEECCCC
Confidence 32211 134555555444433211111 124566667766664
Q ss_pred CCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 303 QQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 303 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
. ++...... ...+++|++|+++++. ++... ...+..+++|+.|++++| .++...... ...+++|++|++..+
T Consensus 310 ~-l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 310 E-INKIDDNA-FWGLTHLLKLNLSQNF-LGSID-SRMFENLDKLEVLDLSYN-HIRALGDQS-FLGLPNLKELALDTN 381 (455)
T ss_dssp C-CCEECTTT-TTTCTTCCEEECCSSC-CCEEC-GGGGTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS
T ss_pred c-ccccChhH-hcCcccCCEEECCCCc-cCCcC-hhHhcCcccCCEEECCCC-cccccChhh-ccccccccEEECCCC
Confidence 3 32211111 2236777777777753 43221 112345777888888775 343322222 235788888877654
No 23
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.37 E-value=8.3e-13 Score=101.21 Aligned_cols=103 Identities=22% Similarity=0.312 Sum_probs=84.0
Q ss_pred CCCEEEcccCCCChhHHHHHHhcCCCCcEEEee-cccCCHHHHHHHHhc---CCCCCeEeccCCCCCCHHHHHHHHhcCC
Q 016845 243 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQ-CINVTDEALVAVGNQ---CLSLELLALYSFQQFTDKGLHAVGKGCK 318 (381)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 318 (381)
+|++|+++++.+++.++..+ ..+++|++|+++ |..++|.++..+... +++|++|++++|..++|.++..+.. ++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CT
T ss_pred eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CC
Confidence 57888888887888877666 568889999887 667888888888752 4689999999999999999998875 89
Q ss_pred CCCEEeccCCCCCCHHH--HHHHHhcCCCCC
Q 016845 319 KLKNLTLSDCYFLSDMG--LEAIATGCKELT 347 (381)
Q Consensus 319 ~L~~L~l~~~~~i~~~~--l~~l~~~~~~L~ 347 (381)
+|++|++++|+.+++.+ ...+-..+|+++
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 99999999999999865 455666788865
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.35 E-value=2e-11 Score=111.37 Aligned_cols=190 Identities=19% Similarity=0.135 Sum_probs=120.0
Q ss_pred HhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhc
Q 016845 161 QKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSH 240 (381)
Q Consensus 161 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 240 (381)
..+++|+.|+++++.+.... . ...+++|++|+++++. +..... ... .++|+.|++.++. +.+. .. ...
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~---~~~-l~~L~~L~l~~n~-l~~~--~~-l~~ 241 (466)
T 1o6v_A 174 ANLTTLERLDISSNKVSDIS--V-LAKLTNLESLIATNNQ-ISDITP---LGI-LTNLDELSLNGNQ-LKDI--GT-LAS 241 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCG--G-GGGCTTCSEEECCSSC-CCCCGG---GGG-CTTCCEEECCSSC-CCCC--GG-GGG
T ss_pred ccCCCCCEEECcCCcCCCCh--h-hccCCCCCEEEecCCc-cccccc---ccc-cCCCCEEECCCCC-cccc--hh-hhc
Confidence 35677777777777655421 1 3456778888887765 322111 122 3678888887753 3222 12 246
Q ss_pred CCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 016845 241 CKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKL 320 (381)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 320 (381)
+++|+.|++++|.+..... +..+++|+.|+++.+.+..... ...+++|+.|+++++. +++.. . ...+++|
T Consensus 242 l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L 311 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQ-LEDIS--P-ISNLKNL 311 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSC-CSCCG--G-GGGCTTC
T ss_pred CCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCc-ccCch--h-hcCCCCC
Confidence 7888888888877654332 4567888888888776654221 3367888888888764 33211 1 3458899
Q ss_pred CEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 321 KNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 321 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
+.|++++|. +++..- ...+++|+.|++++|. ++.. . -...+++|+.|++..+
T Consensus 312 ~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 312 TYLTLYFNN-ISDISP---VSSLTKLQRLFFYNNK-VSDV--S-SLANLTNINWLSAGHN 363 (466)
T ss_dssp SEEECCSSC-CSCCGG---GGGCTTCCEEECCSSC-CCCC--G-GGTTCTTCCEEECCSS
T ss_pred CEEECcCCc-CCCchh---hccCccCCEeECCCCc-cCCc--h-hhccCCCCCEEeCCCC
Confidence 999998874 443221 3568999999999874 4432 2 2457899999988755
No 25
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.35 E-value=1.6e-14 Score=124.77 Aligned_cols=230 Identities=17% Similarity=0.084 Sum_probs=106.8
Q ss_pred HHHHHhcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHH--
Q 016845 130 LNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGL-- 207 (381)
Q Consensus 130 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-- 207 (381)
+..+...+++|++|+++++ .++... ...+..+++|++|+++++.+++... ...+++|++|+++++. +.....
T Consensus 26 ~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~-l~~l~~~~ 99 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGN-PLSQIS-AADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY-VQELLVGP 99 (317)
T ss_dssp HHHHHTTGGGCSEEECTTS-CCCCCC-HHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSE-EEEEEECT
T ss_pred HHHHhccCCCCCEEECcCC-ccCcCC-HHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCc-cccccCCC
Confidence 3344455667777777765 333211 1223466777777777776543211 3345667777766554 221100
Q ss_pred ------------HHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEee
Q 016845 208 ------------VDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQ 275 (381)
Q Consensus 208 ------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 275 (381)
..+.....++|+.|+++++ .+....... ...+++|+.|++++|.+.......+...+++|+.|+++
T Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 100 SIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp TCCEEECCSSCCSEEEECCCSSCEEEECCSS-CCCSGGGBC-TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CcCEEECCCCccCCcCccccCCCCEEECCCC-CCCCccchh-hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 0000000134455555443 222111111 12345566666665555443333333345566666665
Q ss_pred cccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 276 CINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCH 355 (381)
Q Consensus 276 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 355 (381)
.+.+... .... .+++|++|+++++. ++.... . ...+++|++|+++++. ++. +...+..+++|+.|++++++
T Consensus 178 ~N~l~~~--~~~~-~l~~L~~L~Ls~N~-l~~l~~-~-~~~l~~L~~L~L~~N~-l~~--l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 178 YNFIYDV--KGQV-VFAKLKTLDLSSNK-LAFMGP-E-FQSAAGVTWISLRNNK-LVL--IEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TSCCCEE--ECCC-CCTTCCEEECCSSC-CCEECG-G-GGGGTTCSEEECTTSC-CCE--ECTTCCCCTTCCEEECTTCC
T ss_pred CCcCccc--cccc-ccccCCEEECCCCc-CCcchh-h-hcccCcccEEECcCCc-ccc--hhhHhhcCCCCCEEEccCCC
Confidence 5544321 0001 24566666666543 321110 1 2235666667666652 432 11222345667777777643
Q ss_pred CCChHHHHHHHhcCCccceeEc
Q 016845 356 NIGTMGLESIGKFCRYASFCRL 377 (381)
Q Consensus 356 ~~~~~~~~~l~~~~~~L~~l~l 377 (381)
++...+......+++|+.+.+
T Consensus 249 -~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 249 -FHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp -CBHHHHHHHHHTCHHHHHHHH
T ss_pred -ccCcCHHHHHhccccceEEEC
Confidence 332334444455566655544
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.33 E-value=3.1e-13 Score=118.71 Aligned_cols=233 Identities=17% Similarity=0.093 Sum_probs=105.5
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|++.++ .++... ...+.++++|++|+++++.++.... .....+++|++|+++++. +........... .
T Consensus 74 ~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~-l 148 (353)
T 2z80_A 74 RCVNLQALVLTSN-GINTIE-EDSFSSLGSLEHLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGNP-YKTLGETSLFSH-L 148 (353)
T ss_dssp TCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSCCSSCCH-HHHTTCTTCSEEECTTCC-CSSSCSSCSCTT-C
T ss_pred cCCCCCEEECCCC-ccCccC-HhhcCCCCCCCEEECCCCcCCcCCH-hHhCCCccCCEEECCCCC-CcccCchhhhcc-C
Confidence 3566777777654 232211 1112356677777777766554222 222346677777776554 221100001111 2
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|++.++..+.......+ ..+++|++|++++|.+..... ..+..+++|+.|+++.+.+..... .....+++|+
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~ 225 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASDLQSYEP-KSLKSIQNVSHLILHMKQHILLLE-IFVDVTSSVE 225 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSCSTTHHH-HHHHHTTTEE
T ss_pred CCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCCcCccCH-HHHhccccCCeecCCCCccccchh-hhhhhccccc
Confidence 5677777766432222211111 355666677766665543211 112345666666666555543221 1222356666
Q ss_pred eEeccCCCCCCHHHHHH--HHhcCCCCCEEeccCCCCCCHHHHHHH---HhcCCCCCEEeccCCCCCChHHHHHHHhcCC
Q 016845 296 LLALYSFQQFTDKGLHA--VGKGCKKLKNLTLSDCYFLSDMGLEAI---ATGCKELTHLEINGCHNIGTMGLESIGKFCR 370 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~i~~~~l~~l---~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~ 370 (381)
.|+++++. ++...... .....+.++.+++.++ .+++..+..+ +..+++|+.|+++++ .++.- -..+...++
T Consensus 226 ~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~ 301 (353)
T 2z80_A 226 CLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSV-PDGIFDRLT 301 (353)
T ss_dssp EEEEESCB-CTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCC-CTTTTTTCT
T ss_pred EEECCCCc-cccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCcc-CHHHHhcCC
Confidence 66666543 22111000 1122444555555553 2444433332 234555666666554 23311 111123455
Q ss_pred ccceeEcccC
Q 016845 371 YASFCRLNLN 380 (381)
Q Consensus 371 ~L~~l~l~~~ 380 (381)
+|++|++..|
T Consensus 302 ~L~~L~L~~N 311 (353)
T 2z80_A 302 SLQKIWLHTN 311 (353)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEEeeCC
Confidence 5555555443
No 27
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.33 E-value=4e-12 Score=109.19 Aligned_cols=188 Identities=20% Similarity=0.196 Sum_probs=121.3
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
+++|++|++.++. ++. +. ....+++|++|+++++.+.+... ...+++|++|+++++. +.... . ... .+
T Consensus 40 l~~L~~L~l~~~~-i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~--~-~~~-l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTT--IE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNP-LKNVS--A-IAG-LQ 107 (308)
T ss_dssp HHTCCEEECTTSC-CCC--CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCC-CSCCG--G-GTT-CT
T ss_pred cCCcCEEEeeCCC-ccC--ch-hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCc-CCCch--h-hcC-CC
Confidence 5688888888763 332 11 13468889999998888765332 4567889999988776 33321 1 222 37
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCe
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (381)
+|+.|+++++. +.+.. . ...+++|++|++++|.+..... +..+++|+.|+++.+.+.+.. . ...+++|+.
T Consensus 108 ~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~ 177 (308)
T 1h6u_A 108 SIKTLDLTSTQ-ITDVT--P-LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTT 177 (308)
T ss_dssp TCCEEECTTSC-CCCCG--G-GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCE
T ss_pred CCCEEECCCCC-CCCch--h-hcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCCh--h-hcCCCCCCE
Confidence 88888888853 33321 2 3577888888888877655332 456788888888877665422 1 336788888
Q ss_pred EeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 016845 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGC 354 (381)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c 354 (381)
|+++++. +++.. . ...+++|++|+++++. +++.. . +..+++|+.|+++++
T Consensus 178 L~l~~n~-l~~~~--~-l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 178 LKADDNK-ISDIS--P-LASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp EECCSSC-CCCCG--G-GGGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEEEEEE
T ss_pred EECCCCc-cCcCh--h-hcCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEEccCC
Confidence 8887754 33211 1 3457888888888864 44322 2 356888888888875
No 28
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.31 E-value=7.1e-14 Score=120.51 Aligned_cols=206 Identities=21% Similarity=0.141 Sum_probs=130.1
Q ss_pred hCCCCCEEEeeccccChhHHHHH-HhhCCCCCeEeccCCCCCCh--HHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHH
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAV-GKVCNQLEDLNLRFCEGLTD--TGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVG 238 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 238 (381)
.+++|++|+++++.+++.....+ ...+++|++|+++++. +.. ..+..+.....++|+.|+++++ .+.......+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~- 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQV- 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTC-
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHh-
Confidence 57899999999988764332222 2457889999998766 332 2233332222368999999885 3332221222
Q ss_pred hcCCCCCEEEcccCCCChh-HHHHHH--hcCCCCcEEEeecccCCH--HHHHHHHhcCCCCCeEeccCCCCCCHHHHHHH
Q 016845 239 SHCKSLETLSLDSEFIHNK-GVHAVA--QGCPLLRVLKLQCINVTD--EALVAVGNQCLSLELLALYSFQQFTDKGLHAV 313 (381)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~~~~--~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 313 (381)
..+++|++|++++|.+... ++.... ..+++|+.|+++.+.+.. .....+...+++|++|+++++. ++.......
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 248 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPS 248 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhh
Confidence 4688999999998876543 222222 567899999998888873 2333444467899999998854 433211111
Q ss_pred HhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 314 GKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 314 ~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
...+++|++|+++++. ++. +..-+ .++|+.|+++++ .++.. .. ...+++|++|++..|
T Consensus 249 ~~~l~~L~~L~Ls~N~-l~~--ip~~~--~~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTG-LKQ--VPKGL--PAKLSVLDLSYN-RLDRN--PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCCCTTCCEEECTTSC-CSS--CCSSC--CSEEEEEECCSS-CCCSC--CC-TTTSCEEEEEECTTC
T ss_pred hhhcCCCCEEECCCCc-cCh--hhhhc--cCCceEEECCCC-CCCCC--hh-HhhCCCCCEEeccCC
Confidence 2346889999999864 541 11111 168999999985 45543 22 457899999988765
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.31 E-value=3.7e-12 Score=118.77 Aligned_cols=138 Identities=22% Similarity=0.201 Sum_probs=75.1
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|+++++ .++.. ....+.++++|++|+++++.+...........+++|++|+++++..+....... ... .
T Consensus 72 ~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~-l 147 (549)
T 2z81_A 72 SLGSLEHLDLSDN-HLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-FAG-L 147 (549)
T ss_dssp TCTTCCEEECTTS-CCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTT-C
T ss_pred ccccCCEEECCCC-ccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhh-hhc-c
Confidence 4677777777765 23221 122234677777777777766532222223456777777777654222211001 111 2
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (381)
++|+.|++.++ .+.......+ ..+++|++|+++.+...... ..+...+++|+.|+++.+.+.
T Consensus 148 ~~L~~L~L~~n-~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 148 TSLNELEIKAL-SLRNYQSQSL-KSIRDIHHLTLHLSESAFLL-EIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp CEEEEEEEEET-TCCEECTTTT-TTCSEEEEEEEECSBSTTHH-HHHHHSTTTBSEEEEESCBCT
T ss_pred cccCeeeccCC-cccccChhhh-hccccCceEecccCcccccc-hhhHhhcccccEEEccCCccc
Confidence 67777777764 2322111112 35677788888776654322 223455788999998766554
No 30
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.30 E-value=2.2e-11 Score=104.61 Aligned_cols=189 Identities=20% Similarity=0.179 Sum_probs=136.3
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcC
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 241 (381)
.+++|++|+++++.+... .. ...+++|+.|+++++. +..... ...+ ++|+.|+++++. +.+.. . ...+
T Consensus 39 ~l~~L~~L~l~~~~i~~l--~~-~~~l~~L~~L~L~~n~-i~~~~~---~~~l-~~L~~L~L~~n~-l~~~~--~-~~~l 106 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI--EG-VQYLNNLIGLELKDNQ-ITDLAP---LKNL-TKITELELSGNP-LKNVS--A-IAGL 106 (308)
T ss_dssp HHHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSSC-CCCCGG---GTTC-CSCCEEECCSCC-CSCCG--G-GTTC
T ss_pred HcCCcCEEEeeCCCccCc--hh-hhccCCCCEEEccCCc-CCCChh---HccC-CCCCEEEccCCc-CCCch--h-hcCC
Confidence 467999999999987652 22 3468999999999876 443221 3333 899999999964 43322 2 3578
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (381)
++|++|++++|.+.... . +..+++|+.|+++.+.+.... . ...+++|++|+++++. +++.. . ...+++|+
T Consensus 107 ~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~--~-l~~l~~L~ 176 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQITNIS--P-LAGLTNLQYLSIGNAQ-VSDLT--P-LANLSKLT 176 (308)
T ss_dssp TTCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCC
T ss_pred CCCCEEECCCCCCCCch--h-hcCCCCCCEEECCCCccCcCc--c-ccCCCCccEEEccCCc-CCCCh--h-hcCCCCCC
Confidence 99999999999876633 2 567899999999988776432 1 3478999999999864 44321 1 45689999
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 322 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
.|+++++. +++.. . +..+++|+.|++++|. ++... . ...+++|+.|++..+
T Consensus 177 ~L~l~~n~-l~~~~--~-l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 177 TLKADDNK-ISDIS--P-LASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp EEECCSSC-CCCCG--G-GGGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEEEEEE
T ss_pred EEECCCCc-cCcCh--h-hcCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEEccCC
Confidence 99999974 54322 1 4679999999999974 44422 2 467899999998754
No 31
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.29 E-value=2.2e-12 Score=78.49 Aligned_cols=46 Identities=30% Similarity=0.416 Sum_probs=38.7
Q ss_pred cccccCCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhcccceeee
Q 016845 5 DRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRI 52 (381)
Q Consensus 5 ~~i~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~ 52 (381)
..+. .||+||+.+||+||+ .+|+++++.|||+|+.++..+..|..+
T Consensus 7 ~~~~-~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 7 VSWD-SLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp --CC-SSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCHH-HCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 4456 899999999999999 699999999999999999988888765
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.29 E-value=1.3e-13 Score=119.88 Aligned_cols=199 Identities=16% Similarity=0.106 Sum_probs=91.4
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|++.++ .++... ...+..+++|++|+++++.++.-. . ...++|++|+++++. +....... ....
T Consensus 74 ~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~l~--~--~~~~~L~~L~l~~n~-l~~~~~~~-~~~l- 144 (330)
T 1xku_A 74 NLKNLHTLILINN-KISKIS-PGAFAPLVKLERLYLSKNQLKELP--E--KMPKTLQELRVHENE-ITKVRKSV-FNGL- 144 (330)
T ss_dssp TCTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSSCCSBCC--S--SCCTTCCEEECCSSC-CCBBCHHH-HTTC-
T ss_pred cCCCCCEEECCCC-cCCeeC-HHHhcCCCCCCEEECCCCcCCccC--h--hhcccccEEECCCCc-ccccCHhH-hcCC-
Confidence 3566666666654 222110 111234566666666666544210 0 112566666666544 32211111 1222
Q ss_pred cCccEEeccCCCCCCHH-HHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCC
Q 016845 216 KSLKSLGIAACVKITDV-SLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 294 (381)
++|+.|++.++. +... ........+++|+.|+++++.+..... ...++|+.|+++.+.+.......+ ..+++|
T Consensus 145 ~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~----~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L 218 (330)
T 1xku_A 145 NQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSLTELHLDGNKITKVDAASL-KGLNNL 218 (330)
T ss_dssp TTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS----SCCTTCSEEECTTSCCCEECTGGG-TTCTTC
T ss_pred ccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCc----cccccCCEEECCCCcCCccCHHHh-cCCCCC
Confidence 566666666542 2211 011112356666666666655442110 112566666666555543211122 245667
Q ss_pred CeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 016845 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGC 354 (381)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c 354 (381)
++|+++++. ++...... ...+++|++|+++++. ++. +..-+..+++|+.|+++++
T Consensus 219 ~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 219 AKLGLSFNS-ISAVDNGS-LANTPHLRELHLNNNK-LVK--VPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CEEECCSSC-CCEECTTT-GGGSTTCCEEECCSSC-CSS--CCTTTTTCSSCCEEECCSS
T ss_pred CEEECCCCc-CceeChhh-ccCCCCCCEEECCCCc-Ccc--CChhhccCCCcCEEECCCC
Confidence 777776643 32211111 2236667777776653 331 1111234666777777664
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.29 E-value=3e-14 Score=134.57 Aligned_cols=60 Identities=23% Similarity=0.149 Sum_probs=28.9
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCC
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 200 (381)
+++|+.|++.++ .++ .++..+..+++|++|+++++.+....... ...+++|++|+++++.
T Consensus 277 l~~L~~L~l~~n-~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 277 FSGLQELDLTAT-HLS--ELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNT 336 (606)
T ss_dssp CTTCSEEECTTS-CCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCS
T ss_pred ccCCCEEeccCC-ccC--CCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCC
Confidence 556666666654 222 11111234566666666666554322111 2235556666665543
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.29 E-value=5.5e-15 Score=127.21 Aligned_cols=211 Identities=19% Similarity=0.100 Sum_probs=126.7
Q ss_pred hcCCCccEEecCCCCCCChHH-HHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhh
Q 016845 135 DGFSKLEKLSLIWCSNISSLG-LMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHG 213 (381)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 213 (381)
..+++|+.|++.++ .++..+ .......+++|++|+++++.+... ......+++|++|+++++. +...........
T Consensus 49 ~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~ 124 (306)
T 2z66_A 49 DKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLS 124 (306)
T ss_dssp TTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEE--EEEEETCTTCCEEECTTSE-EESSTTTTTTTT
T ss_pred hccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccC--hhhcCCCCCCCEEECCCCc-ccccccchhhhh
Confidence 35788999999875 343211 011223578999999998876531 1112357889999998765 222111011222
Q ss_pred cCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCC
Q 016845 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLS 293 (381)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 293 (381)
.++|+.|++.++. +..... .....+++|++|+++++.+........+..+++|+.|+++.+.+.......+ ..+++
T Consensus 125 -l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~ 200 (306)
T 2z66_A 125 -LRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSS 200 (306)
T ss_dssp -CTTCCEEECTTSC-CEECST-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTT
T ss_pred -ccCCCEEECCCCc-CCccch-hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh-cCCCC
Confidence 2789999998853 222111 1224678999999988876543233344567889999998777654322222 25788
Q ss_pred CCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC-CCCCEEeccCCCCC
Q 016845 294 LELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGC-KELTHLEINGCHNI 357 (381)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~-~~L~~L~l~~c~~~ 357 (381)
|++|+++++. ++...... ...+++|++|+++++. ++......+ ..+ ++|+.|++++++-.
T Consensus 201 L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~-~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 201 LQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLNH-IMTSKKQEL-QHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTSC-CCBCSSSSC-CCCCTTCCEEECTTCCEE
T ss_pred CCEEECCCCc-cCccChhh-ccCcccCCEeECCCCC-CcccCHHHH-HhhhccCCEEEccCCCee
Confidence 9999998864 33211111 2457899999999874 443222222 235 48999999986543
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.29 E-value=2e-13 Score=121.70 Aligned_cols=85 Identities=16% Similarity=0.084 Sum_probs=40.0
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|++.++. ++... ...+..+++|++|+++++.++.-. ..+...+++|++|+++++. +....... ... .
T Consensus 91 ~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~-l 164 (390)
T 3o6n_A 91 YAHTIQKLYMGFNA-IRYLP-PHVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNN-LERIEDDT-FQA-T 164 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCBCCTTT-TSS-C
T ss_pred CCCCcCEEECCCCC-CCcCC-HHHhcCCCCCCEEECCCCccCcCC-HHHhcCCCCCcEEECCCCc-cCccChhh-ccC-C
Confidence 35566666666542 22110 111235566666666666654211 1122345667777776554 22111000 111 2
Q ss_pred cCccEEeccCC
Q 016845 216 KSLKSLGIAAC 226 (381)
Q Consensus 216 ~~L~~L~l~~~ 226 (381)
++|+.|++.++
T Consensus 165 ~~L~~L~l~~n 175 (390)
T 3o6n_A 165 TSLQNLQLSSN 175 (390)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECCCC
Confidence 56777777664
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.28 E-value=1e-13 Score=117.96 Aligned_cols=208 Identities=19% Similarity=0.114 Sum_probs=125.9
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
.++|++|++.++ .++... ...+..+++|++|+++++.++...... ...+++|++|+++++..+....... ... .+
T Consensus 31 ~~~l~~L~l~~n-~i~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~~-~~~-l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVP-AASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNAQLRSVDPAT-FHG-LG 105 (285)
T ss_dssp CTTCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCTTCCCCCTTT-TTT-CT
T ss_pred CCCceEEEeeCC-cCCccC-HHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCCCCccccCHHH-hcC-Cc
Confidence 368888888875 333211 112346788999999888766432222 2357889999998765233211111 112 27
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCe
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (381)
+|+.|++.++. +..... .....+++|++|+++++.+..... ..+..+++|+.|+++.+.+.......+ ..+++|++
T Consensus 106 ~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~ 181 (285)
T 1ozn_A 106 RLHTLHLDRCG-LQELGP-GLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDR 181 (285)
T ss_dssp TCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCE
T ss_pred CCCEEECCCCc-CCEECH-hHhhCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCCcccccCHHHh-cCccccCE
Confidence 88999988853 322211 112467889999998877654221 123457889999998776653221112 25688999
Q ss_pred EeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCC
Q 016845 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNI 357 (381)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~ 357 (381)
|+++++. ++...... ...+++|+.|+++++. ++.... ..+..+++|+.|++++++-.
T Consensus 182 L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 182 LLLHQNR-VAHVHPHA-FRDLGRLMTLYLFANN-LSALPT-EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECCSSC-CCEECTTT-TTTCTTCCEEECCSSC-CSCCCH-HHHTTCTTCCEEECCSSCEE
T ss_pred EECCCCc-ccccCHhH-ccCcccccEeeCCCCc-CCcCCH-HHcccCcccCEEeccCCCcc
Confidence 9998854 43322222 2347889999998863 554222 23356889999999886544
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.28 E-value=6.8e-14 Score=132.13 Aligned_cols=63 Identities=22% Similarity=0.177 Sum_probs=30.4
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 200 (381)
.+++|+.|++.++ .++... ......+++|++|+++++.+...........+++|++|+++++.
T Consensus 299 ~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 299 GLSTLKKLVLSAN-KFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp SCTTCCEEECTTC-CCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred ccccCCEEECccC-CcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 3566777777664 222211 11223566666666666654321111112335566666665543
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=2.4e-13 Score=127.84 Aligned_cols=61 Identities=16% Similarity=0.087 Sum_probs=27.5
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCC
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 200 (381)
+++|+.|+++++. ++.. ....+.++++|++|+|++|.++... ..+...+++|+.|+++++.
T Consensus 98 l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 98 AHTIQKLYMGFNA-IRYL-PPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp CTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCc-CCCC-CHHHHcCCCCCCEEEeeCCCCCCCC-HHHhccCCCCCEEEeeCCc
Confidence 4555555555442 2211 0111234556666666665544211 1112345566666666543
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.26 E-value=1.8e-14 Score=124.03 Aligned_cols=228 Identities=18% Similarity=0.127 Sum_probs=145.5
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhH--HHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQG--LAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
++|++|++.++ .++... ...+..+++|++|+++++.++... ...+ ..+++|++|+++++. +... ...... .
T Consensus 28 ~~l~~L~L~~n-~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~-i~~l--~~~~~~-l 100 (306)
T 2z66_A 28 SSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNG-VITM--SSNFLG-L 100 (306)
T ss_dssp TTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCS-EEEE--EEEEET-C
T ss_pred CCCCEEECCCC-ccCccC-HhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCc-cccC--hhhcCC-C
Confidence 68999999876 333211 122357899999999999876432 1222 247999999999875 3211 011122 3
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|++.++. +...........+++|++|+++++.+.... ...+..+++|+.|+++.+.+...........+++|+
T Consensus 101 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 101 EQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 799999998852 222111112357899999999998765422 223456899999999877765422222233678999
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcC-Cccce
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFC-RYASF 374 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~-~~L~~ 374 (381)
+|+++++. ++...... ...+++|++|+++++. ++...... ...+++|+.|+++++ .++......+. .+ ++|++
T Consensus 179 ~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~-~~~~~L~~ 252 (306)
T 2z66_A 179 FLDLSQCQ-LEQLSPTA-FNSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSLAF 252 (306)
T ss_dssp EEECTTSC-CCEECTTT-TTTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTS-CCCBCSSSSCC-CCCTTCCE
T ss_pred EEECCCCC-cCCcCHHH-hcCCCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCC-CCcccCHHHHH-hhhccCCE
Confidence 99999864 44321122 2358999999999974 44321111 356899999999996 45443333333 44 48999
Q ss_pred eEcccC
Q 016845 375 CRLNLN 380 (381)
Q Consensus 375 l~l~~~ 380 (381)
|++..|
T Consensus 253 L~L~~N 258 (306)
T 2z66_A 253 LNLTQN 258 (306)
T ss_dssp EECTTC
T ss_pred EEccCC
Confidence 998765
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.26 E-value=7.2e-12 Score=116.83 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=35.1
Q ss_pred hcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccc-cChhHHHHHHhhCCCCCeEeccCCC
Q 016845 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 200 (381)
..+++|+.|+++++ .++..........+++|++|+++++. ++.. .......+++|++|+++++.
T Consensus 95 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 95 GPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp TTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEEEETT
T ss_pred ccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCcccccc-CHhhhhcccccCeeeccCCc
Confidence 35788888888775 23221111223467778888887775 2221 11112345667777766544
No 41
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.25 E-value=3.9e-13 Score=114.37 Aligned_cols=205 Identities=19% Similarity=0.105 Sum_probs=136.2
Q ss_pred CCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCC
Q 016845 163 CIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 242 (381)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 242 (381)
.++|++|+++++.++...... ...+++|++|+++++. +....... ... .++|+.|++.++..+....... ...++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~-~~~-l~~L~~L~l~~n~~l~~~~~~~-~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNV-LARIDAAA-FTG-LALLEQLDLSDNAQLRSVDPAT-FHGLG 105 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSC-CCEECTTT-TTT-CTTCCEEECCSCTTCCCCCTTT-TTTCT
T ss_pred CCCceEEEeeCCcCCccCHHH-cccCCCCCEEECCCCc-cceeCHhh-cCC-ccCCCEEeCCCCCCccccCHHH-hcCCc
Confidence 468999999999877533222 3458999999999875 44321111 122 2799999999864344322222 24789
Q ss_pred CCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCE
Q 016845 243 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKN 322 (381)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 322 (381)
+|++|+++++.+.... ...+..+++|+.|+++.+.+....... ...+++|++|+++++. ++..... ....+++|++
T Consensus 106 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~ 181 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDT-FRDLGNLTHLFLHGNR-ISSVPER-AFRGLHSLDR 181 (285)
T ss_dssp TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC-CCEECTT-TTTTCTTCCE
T ss_pred CCCEEECCCCcCCEEC-HhHhhCCcCCCEEECCCCcccccCHhH-hccCCCccEEECCCCc-ccccCHH-HhcCccccCE
Confidence 9999999998776432 223456899999999887765422111 2357899999999863 4422111 2335899999
Q ss_pred EeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 323 LTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 323 L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
|+++++. ++..... .+..+++|+.|+++++ .++.... .....+++|+.|++..|
T Consensus 182 L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 182 LLLHQNR-VAHVHPH-AFRDLGRLMTLYLFAN-NLSALPT-EALAPLRALQYLRLNDN 235 (285)
T ss_dssp EECCSSC-CCEECTT-TTTTCTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEEECCSS
T ss_pred EECCCCc-ccccCHh-HccCcccccEeeCCCC-cCCcCCH-HHcccCcccCEEeccCC
Confidence 9999974 5432222 2345899999999996 4554333 33457899999998765
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.24 E-value=2.3e-13 Score=124.63 Aligned_cols=229 Identities=17% Similarity=0.104 Sum_probs=111.8
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|++.++ .++... ...+.++++|++|+|+++.+...... ....+++|++|+++++. +....... ...+
T Consensus 78 ~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l- 151 (477)
T 2id5_A 78 NLFNLRTLGLRSN-RLKLIP-LGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDND-LVYISHRA-FSGL- 151 (477)
T ss_dssp TCTTCCEEECCSS-CCCSCC-TTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTT-CCEECTTS-STTC-
T ss_pred CCccCCEEECCCC-cCCccC-cccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCc-cceeChhh-ccCC-
Confidence 3556666666553 222110 01122456666666666654432111 12345666666665543 22111000 1111
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|++.++ .+.......+ ..+++|+.|++.++.+..... ..+..+++|+.|+++.+........... ...+|+
T Consensus 152 ~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~ 227 (477)
T 2id5_A 152 NSLEQLTLEKC-NLTSIPTEAL-SHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLT 227 (477)
T ss_dssp TTCCEEEEESC-CCSSCCHHHH-TTCTTCCEEEEESCCCCEECT-TCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCS
T ss_pred CCCCEEECCCC-cCcccChhHh-cccCCCcEEeCCCCcCcEeCh-hhcccCcccceeeCCCCccccccCcccc-cCcccc
Confidence 56666666664 2222222222 356666666666655433211 1123456677776654332211000111 224677
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCcccee
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFC 375 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l 375 (381)
+|+++++. ++.... .....+++|+.|+++++. ++.... ..+..+++|+.|+++++ .++..... ....+++|+.|
T Consensus 228 ~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L 301 (477)
T 2id5_A 228 SLSITHCN-LTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEG-SMLHELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVL 301 (477)
T ss_dssp EEEEESSC-CCSCCH-HHHTTCTTCCEEECCSSC-CCEECT-TSCTTCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEE
T ss_pred EEECcCCc-ccccCH-HHhcCccccCeeECCCCc-CCccCh-hhccccccCCEEECCCC-ccceECHH-HhcCcccCCEE
Confidence 77777653 332222 223458889999988863 443211 12245788999999885 34432222 23467999999
Q ss_pred EcccC
Q 016845 376 RLNLN 380 (381)
Q Consensus 376 ~l~~~ 380 (381)
+++.+
T Consensus 302 ~L~~N 306 (477)
T 2id5_A 302 NVSGN 306 (477)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 88765
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.23 E-value=1.1e-12 Score=115.12 Aligned_cols=231 Identities=15% Similarity=0.091 Sum_probs=148.5
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
.++|++|+++++ .++... ...+..+++|++|+++++.++...... ...+++|++|+++++. ++.... ...... +
T Consensus 51 ~~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l-~ 124 (353)
T 2z80_A 51 TEAVKSLDLSNN-RITYIS-NSDLQRCVNLQALVLTSNGINTIEEDS-FSSLGSLEHLDLSYNY-LSNLSS-SWFKPL-S 124 (353)
T ss_dssp CTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSC-CSSCCH-HHHTTC-T
T ss_pred cccCcEEECCCC-cCcccC-HHHhccCCCCCEEECCCCccCccCHhh-cCCCCCCCEEECCCCc-CCcCCH-hHhCCC-c
Confidence 368999999876 343221 112347899999999999877532222 3457999999999876 443221 112333 7
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCC-CChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF-IHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
+|+.|++.++ .+...........+++|++|++++|. +.... ...+..+++|+.|+++.+.+.......+ ..+++|+
T Consensus 125 ~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~ 201 (353)
T 2z80_A 125 SLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSL-KSIQNVS 201 (353)
T ss_dssp TCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTT-TTCSEEE
T ss_pred cCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccCHHHH-hccccCC
Confidence 9999999985 33321110123478999999999874 43321 1223567899999998777654322222 2578999
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHH--HHhcCCCCCEEeccCCCCCChHHHH---HHHhcCC
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEA--IATGCKELTHLEINGCHNIGTMGLE---SIGKFCR 370 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~--l~~~~~~L~~L~l~~c~~~~~~~~~---~l~~~~~ 370 (381)
+|+++++. ++... ..+...+++|+.|+++++. ++...... ....++.++.+++.++ .+++..+. .....++
T Consensus 202 ~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 202 HLILHMKQ-HILLL-EIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQIS 277 (353)
T ss_dssp EEEEECSC-STTHH-HHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCT
T ss_pred eecCCCCc-cccch-hhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccc-cccCcchhhhHHHHhccc
Confidence 99998865 43222 2334458999999999864 44321111 1234788999999985 57766543 3456899
Q ss_pred ccceeEcccC
Q 016845 371 YASFCRLNLN 380 (381)
Q Consensus 371 ~L~~l~l~~~ 380 (381)
+|+.|++..+
T Consensus 278 ~L~~L~Ls~N 287 (353)
T 2z80_A 278 GLLELEFSRN 287 (353)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 9999999865
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.23 E-value=4.5e-13 Score=116.14 Aligned_cols=201 Identities=19% Similarity=0.159 Sum_probs=133.3
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcC
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 241 (381)
..++++.|+++++.++. +......+++|++|+++++. +.. +....... ++|+.|+++++ .+.. +......+
T Consensus 79 ~~~~l~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~-l~~--lp~~~~~l-~~L~~L~Ls~n-~l~~--lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAG-LME--LPDTMQQF-AGLETLTLARN-PLRA--LPASIASL 149 (328)
T ss_dssp TSTTCCEEEEESSCCSS--CCSCGGGGTTCSEEEEESSC-CCC--CCSCGGGG-TTCSEEEEESC-CCCC--CCGGGGGC
T ss_pred cccceeEEEccCCCchh--cChhhhhCCCCCEEECCCCC-ccc--hhHHHhcc-CCCCEEECCCC-cccc--CcHHHhcC
Confidence 35899999999998763 22223348999999999876 331 11112223 79999999986 3331 22223578
Q ss_pred CCCCEEEcccCCCChhHHHHH--------HhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHH
Q 016845 242 KSLETLSLDSEFIHNKGVHAV--------AQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAV 313 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 313 (381)
++|++|++++|.........+ +..+++|+.|+++.+.+.. +......+++|++|+++++. ++. +..-
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~N~-l~~--l~~~ 224 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSP-LSA--LGPA 224 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC--CCGGGGGCTTCCEEEEESSC-CCC--CCGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc--chHhhcCCCCCCEEEccCCC-CCc--Cchh
Confidence 999999999865332111111 2348999999999877762 22223468999999999864 331 1112
Q ss_pred HhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 314 GKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 314 ~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
...+++|++|++++|..... +...+..+++|+.|++++|..... +..-...+++|++|+|..+
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCB--CCTTGGGCTTCCEEECTTC
T ss_pred hccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhh--cchhhhcCCCCCEEeCCCC
Confidence 34589999999999754332 122235689999999999865543 2222467899999999864
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.22 E-value=9.8e-14 Score=126.89 Aligned_cols=150 Identities=17% Similarity=0.078 Sum_probs=75.8
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|++.++ .++......+ ..+++|+.|++++|.++......+...+++|+.|+++.+.++.. ... ..+++|+
T Consensus 120 ~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~-~~l~~L~ 194 (487)
T 3oja_A 120 QGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ-VVFAKLK 194 (487)
T ss_dssp SSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC-CCCTTCC
T ss_pred CCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--ccc-ccCCCCC
Confidence 45666666654 2222111111 24566677777666665443333333466677777766555432 111 1356677
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCcccee
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFC 375 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l 375 (381)
.|+++++. ++.... . ...+++|+.|+++++. ++. +...+..+++|+.|++++++ +....+......+++|+.+
T Consensus 195 ~L~Ls~N~-l~~~~~-~-~~~l~~L~~L~Ls~N~-l~~--lp~~l~~l~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 195 TLDLSSNK-LAFMGP-E-FQSAAGVTWISLRNNK-LVL--IEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp EEECCSSC-CCEECG-G-GGGGTTCSEEECTTSC-CCE--ECTTCCCCTTCCEEECTTCC-BCHHHHHHHHTTCHHHHHH
T ss_pred EEECCCCC-CCCCCH-h-HcCCCCccEEEecCCc-Ccc--cchhhccCCCCCEEEcCCCC-CcCcchHHHHHhCCCCcEE
Confidence 77776643 332111 1 2346677777777753 432 12223346677777777743 4433444444555655554
Q ss_pred Ec
Q 016845 376 RL 377 (381)
Q Consensus 376 ~l 377 (381)
.+
T Consensus 268 ~~ 269 (487)
T 3oja_A 268 AK 269 (487)
T ss_dssp HH
T ss_pred ec
Confidence 43
No 46
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=2.5e-12 Score=110.70 Aligned_cols=229 Identities=16% Similarity=0.094 Sum_probs=123.6
Q ss_pred CCccEEecCCCCCCChHHHHHHHH--hCCCCCEEEeeccccChhHHHHHH-hhCCCCCeEeccCCCCCChH-H-HHHHHh
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQ--KCIHLKSLDLQGCYVGDQGLAAVG-KVCNQLEDLNLRFCEGLTDT-G-LVDLAH 212 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-~-~~~~~~ 212 (381)
..++.+.+.++ .+++..+..+.. .+++|++|+++++.+.+.....+. ..+++|++|+++++. +... . +.....
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHT
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHh
Confidence 35667777665 455544443322 346688888887776543322221 346778888887765 3321 0 111111
Q ss_pred hcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhH-HH--HHHhcCCCCcEEEeecccCCH--HHHHHH
Q 016845 213 GCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKG-VH--AVAQGCPLLRVLKLQCINVTD--EALVAV 287 (381)
Q Consensus 213 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~--~~~~~~~~L~~L~l~~~~~~~--~~l~~l 287 (381)
...++|+.|+++++. +....... ...+++|++|++++|.+.... +. .....+++|+.|+++.+.++. .....+
T Consensus 142 ~~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 142 WLKPGLKVLSIAQAH-SPAFSCEQ-VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp TBCSCCCEEEEECCS-SCCCCTTS-CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred hhccCCCEEEeeCCC-cchhhHHH-hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 123678888887752 22211111 136777888888887754322 21 112356778888887777753 222223
Q ss_pred HhcCCCCCeEeccCCCCCCHHHHHHHHh--cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHH
Q 016845 288 GNQCLSLELLALYSFQQFTDKGLHAVGK--GCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESI 365 (381)
Q Consensus 288 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l 365 (381)
...+++|++|+++++. +++.....+.. .+++|++|+++++. ++. +.. .-.++|+.|+++++ .++.- ..
T Consensus 220 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~--lp~--~~~~~L~~L~Ls~N-~l~~~--~~- 289 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQ--VPK--GLPAKLRVLDLSSN-RLNRA--PQ- 289 (310)
T ss_dssp HHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCS--CCS--CCCSCCSCEECCSC-CCCSC--CC-
T ss_pred HhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCc--hhh--hhcCCCCEEECCCC-cCCCC--ch-
Confidence 3456788888887754 33211011111 13678888888753 441 111 11368888888875 44431 11
Q ss_pred HhcCCccceeEcccC
Q 016845 366 GKFCRYASFCRLNLN 380 (381)
Q Consensus 366 ~~~~~~L~~l~l~~~ 380 (381)
...+|+|+.|+++.|
T Consensus 290 ~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 290 PDELPEVDNLTLDGN 304 (310)
T ss_dssp TTSCCCCSCEECSST
T ss_pred hhhCCCccEEECcCC
Confidence 356788888887765
No 47
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.21 E-value=1.7e-13 Score=132.60 Aligned_cols=232 Identities=20% Similarity=0.156 Sum_probs=114.2
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCC--CChHHHHHHH---
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEG--LTDTGLVDLA--- 211 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~--- 211 (381)
+++|+.|++.++. ++. .+...+..+++|++|++++|.+.+.........+++|++|+++++.. .....+....
T Consensus 293 ~~~L~~L~Ls~n~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L 370 (768)
T 3rgz_A 293 CDTLTGLDLSGNH-FYG-AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370 (768)
T ss_dssp CTTCSEEECCSSE-EEE-CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTC
T ss_pred cCcCCEEECcCCc-CCC-ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCC
Confidence 4777777777652 211 11122345677777777777654322222233466777777766541 1111222211
Q ss_pred -------------------hhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEE
Q 016845 212 -------------------HGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVL 272 (381)
Q Consensus 212 -------------------~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 272 (381)
....++|+.|++.++. +.+. +......+++|+.|++++|.+.... ...+..+++|+.|
T Consensus 371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L 447 (768)
T 3rgz_A 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG-FTGK-IPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSLSKLRDL 447 (768)
T ss_dssp SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE-EEEE-CCGGGGGCTTCCEEECCSSEEESCC-CGGGGGCTTCCEE
T ss_pred cEEEccCCCcCCCcChhhhhcccCCccEEECCCCc-cccc-cCHHHhcCCCCCEEECcCCcccCcc-cHHHhcCCCCCEE
Confidence 0001344455444431 1111 0111235666667766665543211 1123446677777
Q ss_pred EeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEecc
Q 016845 273 KLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEIN 352 (381)
Q Consensus 273 ~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~ 352 (381)
+++.+.+.......+ ..+++|++|+++++. ++... ......+++|+.|++++|. ++.. +...+..+++|+.|+++
T Consensus 448 ~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~-l~~~~-p~~l~~l~~L~~L~L~~N~-l~~~-~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 448 KLWLNMLEGEIPQEL-MYVKTLETLILDFND-LTGEI-PSGLSNCTNLNWISLSNNR-LTGE-IPKWIGRLENLAILKLS 522 (768)
T ss_dssp ECCSSCCCSCCCGGG-GGCTTCCEEECCSSC-CCSCC-CGGGGGCTTCCEEECCSSC-CCSC-CCGGGGGCTTCCEEECC
T ss_pred ECCCCcccCcCCHHH-cCCCCceEEEecCCc-ccCcC-CHHHhcCCCCCEEEccCCc-cCCc-CChHHhcCCCCCEEECC
Confidence 776555543211122 246777777777653 22111 1112347778888887764 3321 11123457788888888
Q ss_pred CCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 353 GCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 353 ~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
+|. ++.. +......+++|+.|++..+
T Consensus 523 ~N~-l~~~-~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 523 NNS-FSGN-IPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp SSC-CEEE-CCGGGGGCTTCCEEECCSS
T ss_pred CCc-ccCc-CCHHHcCCCCCCEEECCCC
Confidence 763 3221 2222346788888877654
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.21 E-value=2.1e-13 Score=123.88 Aligned_cols=205 Identities=19% Similarity=0.079 Sum_probs=105.6
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|+++++ .++... ...+.++++|++|+|+++.++... ......+++|++|+++++. +..... ..... .
T Consensus 97 ~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~-l 170 (452)
T 3zyi_A 97 HLHHLEVLQLGRN-SIRQIE-VGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRELWLRNNP-IESIPS-YAFNR-V 170 (452)
T ss_dssp TCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEEECCSCC-CCEECT-TTTTT-C
T ss_pred CCCCCCEEECCCC-ccCCcC-hhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCEEECCCCC-cceeCH-hHHhc-C
Confidence 4667777777664 232211 112235677777777777655321 1122346677777777654 322110 01112 2
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|++.++..+....... ...+++|+.|++++|.+.... -+..+++|+.|+++.+.+.......+ ..+++|+
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~ 245 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMSGNHFPEIRPGSF-HGLSSLK 245 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEECTTSCCSEECGGGG-TTCTTCC
T ss_pred CcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCCcccccc---cccccccccEEECcCCcCcccCcccc-cCccCCC
Confidence 677777777654433322111 235677777777776654321 13346677777777666543211122 2466777
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCH 355 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 355 (381)
.|+++++. ++...... ...+++|+.|+++++ .++... ...+..+++|+.|++++++
T Consensus 246 ~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 246 KLWVMNSQ-VSLIERNA-FDGLASLVELNLAHN-NLSSLP-HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCSCCC-TTSSTTCTTCCEEECCSSC
T ss_pred EEEeCCCc-CceECHHH-hcCCCCCCEEECCCC-cCCccC-hHHhccccCCCEEEccCCC
Confidence 77776643 32211111 234677777777775 243211 1122346777777777643
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.21 E-value=6.4e-13 Score=121.67 Aligned_cols=230 Identities=18% Similarity=0.102 Sum_probs=143.8
Q ss_pred hcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhc
Q 016845 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (381)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 214 (381)
..+++|+.|++.++ .++... ...+.++++|++|+|+++.++... ......+++|++|+++++. +..... .....+
T Consensus 53 ~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l 127 (477)
T 2id5_A 53 ASFPHLEELELNEN-IVSAVE-PGAFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENK-IVILLD-YMFQDL 127 (477)
T ss_dssp TTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTSC-CCEECT-TTTTTC
T ss_pred cCCCCCCEEECCCC-ccCEeC-hhhhhCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCCc-cccCCh-hHcccc
Confidence 35789999999875 333211 122347889999999998766422 1223457899999998765 332111 111222
Q ss_pred CcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCC
Q 016845 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (381)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 294 (381)
++|+.|++.++ .+.......+ ..+++|+.|++++|.+..... ..+..+++|+.|+++.+.+....... ...+++|
T Consensus 128 -~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L 202 (477)
T 2id5_A 128 -YNLKSLEVGDN-DLVYISHRAF-SGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDYS-FKRLYRL 202 (477)
T ss_dssp -TTCCEEEECCT-TCCEECTTSS-TTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECTTC-SCSCTTC
T ss_pred -ccCCEEECCCC-ccceeChhhc-cCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeChhh-cccCccc
Confidence 78999999874 3332221122 468899999999887765433 23456889999999877665321111 2257889
Q ss_pred CeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccce
Q 016845 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASF 374 (381)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~ 374 (381)
++|+++++....... .... ...+|++|+++++. ++..... .+..+++|+.|+++++. ++.... .....+++|+.
T Consensus 203 ~~L~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~ 276 (477)
T 2id5_A 203 KVLEISHWPYLDTMT-PNCL-YGLNLTSLSITHCN-LTAVPYL-AVRHLVYLRFLNLSYNP-ISTIEG-SMLHELLRLQE 276 (477)
T ss_dssp CEEEEECCTTCCEEC-TTTT-TTCCCSEEEEESSC-CCSCCHH-HHTTCTTCCEEECCSSC-CCEECT-TSCTTCTTCCE
T ss_pred ceeeCCCCccccccC-cccc-cCccccEEECcCCc-ccccCHH-HhcCccccCeeECCCCc-CCccCh-hhccccccCCE
Confidence 999998865433111 1111 24589999999874 5532222 34568999999999863 443222 22357899999
Q ss_pred eEcccC
Q 016845 375 CRLNLN 380 (381)
Q Consensus 375 l~l~~~ 380 (381)
|++..+
T Consensus 277 L~L~~n 282 (477)
T 2id5_A 277 IQLVGG 282 (477)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 998765
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.21 E-value=2.4e-13 Score=123.08 Aligned_cols=205 Identities=15% Similarity=0.071 Sum_probs=114.4
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|+++++ .++.... ..+.++++|++|+|+++.++.... .....+++|++|+++++. +..... ..... .
T Consensus 86 ~l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~-~~~~~-l 159 (440)
T 3zyj_A 86 HLRHLEILQLSRN-HIRTIEI-GAFNGLANLNTLELFDNRLTTIPN-GAFVYLSKLKELWLRNNP-IESIPS-YAFNR-I 159 (440)
T ss_dssp SCSSCCEEECCSS-CCCEECG-GGGTTCSSCCEEECCSSCCSSCCT-TTSCSCSSCCEEECCSCC-CCEECT-TTTTT-C
T ss_pred CCCCCCEEECCCC-cCCccCh-hhccCCccCCEEECCCCcCCeeCH-hHhhccccCceeeCCCCc-ccccCH-HHhhh-C
Confidence 4678888888765 3332111 123357788888888877653221 122346778888887665 332111 01112 2
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|++.++..+....... ...+++|+.|++++|.+.... . +..+++|+.|+++.+.+.......+ ..+++|+
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~ 234 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNLREIP--N-LTPLIKLDELDLSGNHLSAIRPGSF-QGLMHLQ 234 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTT-TTTCSSCCEEECTTSCCSSCC--C-CTTCSSCCEEECTTSCCCEECTTTT-TTCTTCC
T ss_pred cccCEeCCCCCCCcceeCcch-hhcccccCeecCCCCcCcccc--c-cCCCcccCEEECCCCccCccChhhh-ccCccCC
Confidence 678888887754443322211 246778888888877665322 1 3456778888887666654221122 2567788
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCH 355 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 355 (381)
+|+++++. ++..... ....+++|+.|+++++. ++... ...+..+++|+.|++++++
T Consensus 235 ~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 235 KLWMIQSQ-IQVIERN-AFDNLQSLVEINLAHNN-LTLLP-HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTCC-CCEECTT-SSTTCTTCCEEECTTSC-CCCCC-TTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCc-eeEEChh-hhcCCCCCCEEECCCCC-CCccC-hhHhccccCCCEEEcCCCC
Confidence 88887743 3322111 12346778888888753 44211 1123457788888887643
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.20 E-value=3.6e-13 Score=116.10 Aligned_cols=205 Identities=20% Similarity=0.158 Sum_probs=133.2
Q ss_pred cCCCccEEecCCCCCCChHHHHHH-HHhCCCCCEEEeeccccChh--HHHHHHh-hCCCCCeEeccCCCCCChHHHHHHH
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSL-AQKCIHLKSLDLQGCYVGDQ--GLAAVGK-VCNQLEDLNLRFCEGLTDTGLVDLA 211 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~ 211 (381)
.+++|++|+++++. ++......+ ...+++|++|+++++.+++. .+..+.. ..++|++|+++++. +.......+
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~- 169 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV- 169 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC-
T ss_pred CcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh-
Confidence 47899999998863 332111111 24789999999999997754 2222211 13899999999876 332211111
Q ss_pred hhcCcCccEEeccCCCCCCHHHHH-HH-HhcCCCCCEEEcccCCCCh--hHHHHHHhcCCCCcEEEeecccCCHHHHHHH
Q 016845 212 HGCGKSLKSLGIAACVKITDVSLE-AV-GSHCKSLETLSLDSEFIHN--KGVHAVAQGCPLLRVLKLQCINVTDEALVAV 287 (381)
Q Consensus 212 ~~~~~~L~~L~l~~~~~~~~~~~~-~l-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l 287 (381)
.. .++|+.|+++++.-....... .+ ...+++|++|++++|.+.. .....++..+++|+.|+++.+.+........
T Consensus 170 ~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 170 RV-FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CC-CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred cc-CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 12 379999999996432222222 22 1578999999999998874 2233555678999999999887765321111
Q ss_pred HhcCCCCCeEeccCCCCCCHHHHHHHHhc-CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 016845 288 GNQCLSLELLALYSFQQFTDKGLHAVGKG-CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGC 354 (381)
Q Consensus 288 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c 354 (381)
...+++|++|+++++. ++. +... .++|++|+++++ .++.. .. ...+++|+.|++++.
T Consensus 249 ~~~l~~L~~L~Ls~N~-l~~-----ip~~~~~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTG-LKQ-----VPKGLPAKLSVLDLSYN-RLDRN--PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCCCTTCCEEECTTSC-CSS-----CCSSCCSEEEEEECCSS-CCCSC--CC-TTTSCEEEEEECTTC
T ss_pred hhhcCCCCEEECCCCc-cCh-----hhhhccCCceEEECCCC-CCCCC--hh-HhhCCCCCEEeccCC
Confidence 1245899999999864 431 1111 268999999996 46543 22 456899999999984
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.20 E-value=2.4e-11 Score=112.54 Aligned_cols=107 Identities=21% Similarity=0.160 Sum_probs=67.5
Q ss_pred hcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhc
Q 016845 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (381)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 214 (381)
..+++|+.|+++++ .++... ...+.++++|++|+++++.++. ++.. .+++|++|+++++. +....+.......
T Consensus 42 ~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l 114 (520)
T 2z7x_B 42 LSLSKLRILIISHN-RIQYLD-ISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHLDLSFNA-FDALPICKEFGNM 114 (520)
T ss_dssp TTCTTCCEEECCSS-CCCEEE-GGGGTTCTTCCEEECCSSCCCE--EECC--CCCCCSEEECCSSC-CSSCCCCGGGGGC
T ss_pred cccccccEEecCCC-ccCCcC-hHHhhcccCCCEEecCCCceee--cCcc--ccCCccEEeccCCc-cccccchhhhccC
Confidence 45789999999876 343211 2233478899999999988763 1111 57889999998876 3321111112222
Q ss_pred CcCccEEeccCCCCCCHHHHHHHHhcCCCC--CEEEcccCCC
Q 016845 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSL--ETLSLDSEFI 254 (381)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L--~~L~l~~~~~ 254 (381)
++|+.|+++++ .+.... ...+++| +.|++++|.+
T Consensus 115 -~~L~~L~L~~n-~l~~~~----~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 115 -SQLKFLGLSTT-HLEKSS----VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp -TTCCEEEEEES-SCCGGG----GGGGTTSCEEEEEEEECTT
T ss_pred -CcceEEEecCc-ccchhh----ccccccceeeEEEeecccc
Confidence 78999999885 444432 2356777 8888877655
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.19 E-value=3.7e-13 Score=121.81 Aligned_cols=202 Identities=16% Similarity=0.082 Sum_probs=85.6
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcC
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 241 (381)
++++|++|+|+++.+....... ...+++|++|+++++. ++.... ..... .++|+.|++.++ .+...... ....+
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~~~-l~~L~~L~L~~N-~i~~~~~~-~~~~l 159 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGA-FNGLANLNTLELFDNR-LTTIPN-GAFVY-LSKLKELWLRNN-PIESIPSY-AFNRI 159 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGG-GTTCSSCCEEECCSSC-CSSCCT-TTSCS-CSSCCEEECCSC-CCCEECTT-TTTTC
T ss_pred CCCCCCEEECCCCcCCccChhh-ccCCccCCEEECCCCc-CCeeCH-hHhhc-cccCceeeCCCC-cccccCHH-HhhhC
Confidence 4566666666666544322111 2235566666665543 221100 00111 145666666553 22211111 11345
Q ss_pred CCCCEEEcccCC-CChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 016845 242 KSLETLSLDSEF-IHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKL 320 (381)
Q Consensus 242 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 320 (381)
++|++|+++++. +.... ...+..+++|+.|+++.+.+..- ..+ ..+++|++|+++++. ++..... ....+++|
T Consensus 160 ~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L 233 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLREI--PNL-TPLIKLDELDLSGNH-LSAIRPG-SFQGLMHL 233 (440)
T ss_dssp TTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSSC--CCC-TTCSSCCEEECTTSC-CCEECTT-TTTTCTTC
T ss_pred cccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCccc--ccc-CCCcccCEEECCCCc-cCccChh-hhccCccC
Confidence 666666665522 21111 11223455666666655444321 111 234566666665542 3221111 11235566
Q ss_pred CEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEccc
Q 016845 321 KNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNL 379 (381)
Q Consensus 321 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~ 379 (381)
++|+++++. ++..... .+..+++|+.|+++++ .++... ......+++|+.|+|+.
T Consensus 234 ~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 234 QKLWMIQSQ-IQVIERN-AFDNLQSLVEINLAHN-NLTLLP-HDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CEEECTTCC-CCEECTT-SSTTCTTCCEEECTTS-CCCCCC-TTTTSSCTTCCEEECCS
T ss_pred CEEECCCCc-eeEEChh-hhcCCCCCCEEECCCC-CCCccC-hhHhccccCCCEEEcCC
Confidence 666666542 3321111 1233566666666653 333211 11223456666665544
No 54
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.19 E-value=2e-10 Score=100.06 Aligned_cols=204 Identities=18% Similarity=0.152 Sum_probs=106.3
Q ss_pred CCccEEecCCCCCCC----hHHHHHH---HHhCCCCCEEEeeccccC--------hhHHHHHHhhCCCCCeEeccCCCCC
Q 016845 138 SKLEKLSLIWCSNIS----SLGLMSL---AQKCIHLKSLDLQGCYVG--------DQGLAAVGKVCNQLEDLNLRFCEGL 202 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~----~~~~~~~---~~~~~~L~~L~l~~~~~~--------~~~~~~~~~~~~~L~~L~l~~~~~~ 202 (381)
+.++.|.+..+. .+ ...+..+ ...+++|+.|.+...... ...+..+...+|+|+.|.+.++.++
T Consensus 107 ~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 357788887542 22 1222232 446789999988654321 1124455566778888888765322
Q ss_pred ChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHh-cCCCCCEEEccc--CCC-Ch---hHHHHHH--hcCCCCcEEE
Q 016845 203 TDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGS-HCKSLETLSLDS--EFI-HN---KGVHAVA--QGCPLLRVLK 273 (381)
Q Consensus 203 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~--~~~-~~---~~~~~~~--~~~~~L~~L~ 273 (381)
.... + . .++|+.|.+..| .++...+..+.. .+|+|++|+++. +.. .+ ..+..+. ..+|+|+.|.
T Consensus 186 ~l~~---~-~--~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~ 258 (362)
T 2ra8_A 186 SIGK---K-P--RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258 (362)
T ss_dssp BCCS---C-B--CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEE
T ss_pred eecc---c-c--CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEe
Confidence 2111 1 1 267777777654 455666555543 567777777642 111 11 1111111 1356666666
Q ss_pred eecccCCHHHHHHHHh--cCCCCCeEeccCCCCCCHHHHHHHHh---cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCE
Q 016845 274 LQCINVTDEALVAVGN--QCLSLELLALYSFQQFTDKGLHAVGK---GCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 348 (381)
Q Consensus 274 l~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 348 (381)
+..+.+.+.....+.. .+|+|++|+++. ..+++.+...+.. .+++|+.|++++| .+++.....+.+.+ ...
T Consensus 259 L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~ 334 (362)
T 2ra8_A 259 IVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMK 334 (362)
T ss_dssp EESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSE
T ss_pred CCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCE
Confidence 6655555443333332 345666666654 3455555544442 2466666666654 36666665555433 233
Q ss_pred EeccC
Q 016845 349 LEING 353 (381)
Q Consensus 349 L~l~~ 353 (381)
+++++
T Consensus 335 ~~~~~ 339 (362)
T 2ra8_A 335 IDVSD 339 (362)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 45544
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.19 E-value=2.3e-11 Score=110.18 Aligned_cols=200 Identities=18% Similarity=0.088 Sum_probs=101.7
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|+++++ .++... ...+++|++|+++++.+++.. ...+++|++|+++++. +.... ... .
T Consensus 62 ~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~-l~~l~----~~~-l 126 (457)
T 3bz5_A 62 KLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNK-LTKLD----VSQ-N 126 (457)
T ss_dssp GCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSC-CSCCC----CTT-C
T ss_pred ccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCc-CCeec----CCC-C
Confidence 3556666666654 222211 234566666666666555421 2345666666666553 22211 111 2
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCC-CChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF-IHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 294 (381)
++|+.|++.++ .++... ...+++|+.|++++|. +.... +..+++|+.|+++.+.+..-. ...+++|
T Consensus 127 ~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~l~~l~----l~~l~~L 193 (457)
T 3bz5_A 127 PLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNKITELD----VSQNKLL 193 (457)
T ss_dssp TTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSCCCCCC----CTTCTTC
T ss_pred CcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCCccceec----cccCCCC
Confidence 56666666654 222211 2355666666666652 22211 234566777777665554421 2245677
Q ss_pred CeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccce
Q 016845 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASF 374 (381)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~ 374 (381)
+.|+++++. ++... ...+++|+.|+++++. ++. +. +..+++|+.|+++++ .++... ...+++|+.
T Consensus 194 ~~L~l~~N~-l~~~~----l~~l~~L~~L~Ls~N~-l~~--ip--~~~l~~L~~L~l~~N-~l~~~~----~~~l~~L~~ 258 (457)
T 3bz5_A 194 NRLNCDTNN-ITKLD----LNQNIQLTFLDCSSNK-LTE--ID--VTPLTQLTYFDCSVN-PLTELD----VSTLSKLTT 258 (457)
T ss_dssp CEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSC--CC--CTTCTTCSEEECCSS-CCSCCC----CTTCTTCCE
T ss_pred CEEECcCCc-CCeec----cccCCCCCEEECcCCc-ccc--cC--ccccCCCCEEEeeCC-cCCCcC----HHHCCCCCE
Confidence 777776643 33221 2346777777777753 443 11 345677777777775 333321 235666666
Q ss_pred eEcc
Q 016845 375 CRLN 378 (381)
Q Consensus 375 l~l~ 378 (381)
|.+.
T Consensus 259 L~l~ 262 (457)
T 3bz5_A 259 LHCI 262 (457)
T ss_dssp EECT
T ss_pred Eecc
Confidence 6544
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.18 E-value=5.8e-13 Score=120.97 Aligned_cols=225 Identities=20% Similarity=0.119 Sum_probs=130.6
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcC
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 217 (381)
++++.|+++++ .++... ...+..+++|++|+|+++.++...... ...+++|++|+++++. +..... ..... .++
T Consensus 75 ~~l~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~~~-l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQ-ADTFRHLHHLEVLQLGRNSIRQIEVGA-FNGLASLNTLELFDNW-LTVIPS-GAFEY-LSK 148 (452)
T ss_dssp TTCSEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSC-CSBCCT-TTSSS-CTT
T ss_pred CCccEEECcCC-cCceEC-HHHcCCCCCCCEEECCCCccCCcChhh-ccCcccCCEEECCCCc-CCccCh-hhhcc-cCC
Confidence 57888888775 333211 112346788888888888766432222 2357888888888765 332111 11112 268
Q ss_pred ccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccC-CCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCe
Q 016845 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSE-FIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (381)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (381)
|+.|+++++ .+...... ....+++|+.|+++++ .+.... ...+..+++|+.|+++.+.+... .. ...+++|+.
T Consensus 149 L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~ 222 (452)
T 3zyi_A 149 LRELWLRNN-PIESIPSY-AFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDM--PN-LTPLVGLEE 222 (452)
T ss_dssp CCEEECCSC-CCCEECTT-TTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSSC--CC-CTTCTTCCE
T ss_pred CCEEECCCC-CcceeCHh-HHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccccc--cc-ccccccccE
Confidence 888888875 33322111 1246788888888873 332211 11234578888888877766532 12 225678888
Q ss_pred EeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeE
Q 016845 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCR 376 (381)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~ 376 (381)
|+++++. ++..... ....+++|+.|+++++. ++..... .+..+++|+.|+++++ .++... ......+++|+.|+
T Consensus 223 L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 223 LEMSGNH-FPEIRPG-SFHGLSSLKKLWVMNSQ-VSLIERN-AFDGLASLVELNLAHN-NLSSLP-HDLFTPLRYLVELH 296 (452)
T ss_dssp EECTTSC-CSEECGG-GGTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSS-CCSCCC-TTSSTTCTTCCEEE
T ss_pred EECcCCc-CcccCcc-cccCccCCCEEEeCCCc-CceECHH-HhcCCCCCCEEECCCC-cCCccC-hHHhccccCCCEEE
Confidence 8888754 3322111 23357888888888863 4432111 2345788888888885 444321 22234678888888
Q ss_pred cccC
Q 016845 377 LNLN 380 (381)
Q Consensus 377 l~~~ 380 (381)
|+.|
T Consensus 297 L~~N 300 (452)
T 3zyi_A 297 LHHN 300 (452)
T ss_dssp CCSS
T ss_pred ccCC
Confidence 7654
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.18 E-value=8.6e-13 Score=114.74 Aligned_cols=227 Identities=18% Similarity=0.089 Sum_probs=139.0
Q ss_pred hcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHH-HHHHhh
Q 016845 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGL-VDLAHG 213 (381)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 213 (381)
..+++|+.|+++++ .++. +.. ..+++|++|+++++.+....... ...+++|+.|+++++. +...+. ......
T Consensus 97 ~~l~~L~~L~Ls~n-~l~~--l~~--~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~ 169 (330)
T 1xku_A 97 APLVKLERLYLSKN-QLKE--LPE--KMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNP-LKSSGIENGAFQG 169 (330)
T ss_dssp TTCTTCCEEECCSS-CCSB--CCS--SCCTTCCEEECCSSCCCBBCHHH-HTTCTTCCEEECCSSC-CCGGGBCTTGGGG
T ss_pred cCCCCCCEEECCCC-cCCc--cCh--hhcccccEEECCCCcccccCHhH-hcCCccccEEECCCCc-CCccCcChhhccC
Confidence 35789999999875 3331 110 12378999999999877543333 3468999999998876 332111 111222
Q ss_pred cCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCC
Q 016845 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLS 293 (381)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 293 (381)
.++|+.|++.++. +.... ....++|++|++++|.+..... ..+..+++|+.|+++.+.+.......+ ..+++
T Consensus 170 -l~~L~~L~l~~n~-l~~l~----~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~ 241 (330)
T 1xku_A 170 -MKKLSYIRIADTN-ITTIP----QGLPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPH 241 (330)
T ss_dssp -CTTCCEEECCSSC-CCSCC----SSCCTTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTTTG-GGSTT
T ss_pred -CCCcCEEECCCCc-cccCC----ccccccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCceeChhhc-cCCCC
Confidence 3799999998853 32211 0123789999999987765322 224568899999998777754322222 35789
Q ss_pred CCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHH-----hcCCCCCEEeccCCCCCChHHHHHHHhc
Q 016845 294 LELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIA-----TGCKELTHLEINGCHNIGTMGLESIGKF 368 (381)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~-----~~~~~L~~L~l~~c~~~~~~~~~~l~~~ 368 (381)
|++|+++++. ++ .+......+++|++|+++++. ++......+. ...+.|+.|++.+.+-............
T Consensus 242 L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 242 LRELHLNNNK-LV--KVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp CCEEECCSSC-CS--SCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCEEECCCCc-Cc--cCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 9999998864 33 111113457899999999863 4432222221 1247889999998653222222234556
Q ss_pred CCccceeEcccC
Q 016845 369 CRYASFCRLNLN 380 (381)
Q Consensus 369 ~~~L~~l~l~~~ 380 (381)
+++|+.++++-|
T Consensus 318 ~~~l~~l~L~~N 329 (330)
T 1xku_A 318 VYVRAAVQLGNY 329 (330)
T ss_dssp CCCGGGEEC---
T ss_pred ccceeEEEeccc
Confidence 888999888765
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.18 E-value=3e-13 Score=127.73 Aligned_cols=85 Identities=20% Similarity=0.131 Sum_probs=34.3
Q ss_pred CCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 016845 266 CPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKE 345 (381)
Q Consensus 266 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 345 (381)
+++|+.|+++.+.+.+..+......+++|++|+++++. ++..... ....+++|++|++++|. ++... ...+..+++
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~ 522 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWG-VFDTLHRLQLLNMSHNN-LLFLD-SSHYNQLYS 522 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC-CSCEE-GGGTTTCTT
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChh-hhcccccCCEEECCCCc-CCCcC-HHHccCCCc
Confidence 44555555544433321111111234555555555542 2211111 11235555556555542 33211 111233555
Q ss_pred CCEEeccCC
Q 016845 346 LTHLEINGC 354 (381)
Q Consensus 346 L~~L~l~~c 354 (381)
|+.|++++|
T Consensus 523 L~~L~l~~N 531 (606)
T 3vq2_A 523 LSTLDCSFN 531 (606)
T ss_dssp CCEEECTTS
T ss_pred CCEEECCCC
Confidence 666666654
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.17 E-value=2.1e-11 Score=112.91 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=33.7
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCC--CeEeccCCC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQL--EDLNLRFCE 200 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~ 200 (381)
.+++|++|+++++ .++...++..+..+++|++|+++++.+....+ ..+++| +.|+++++.
T Consensus 88 ~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 88 PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKSSV----LPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGGGG----GGGTTSCEEEEEEEECT
T ss_pred ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccchhhc----cccccceeeEEEeeccc
Confidence 3567777777765 23221122233466777777777777665322 234556 777776543
No 60
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.17 E-value=7.8e-11 Score=102.67 Aligned_cols=186 Identities=17% Similarity=0.131 Sum_probs=130.7
Q ss_pred hcCCCccEEecCCCCC-------CChHHHHHHHHhCCCCCEEEeeccc-cChhHHHHHHhhCCCCCeEeccCCCCCChHH
Q 016845 135 DGFSKLEKLSLIWCSN-------ISSLGLMSLAQKCIHLKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCEGLTDTG 206 (381)
Q Consensus 135 ~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 206 (381)
..+++|+.|.+..... .....+..+...+|+|+.|.|+++. +. +..+ ..++|++|.+..+. ++...
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~---l~~~--~~~~L~~L~L~~~~-l~~~~ 209 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS---IGKK--PRPNLKSLEIISGG-LPDSV 209 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB---CCSC--BCTTCSEEEEECSB-CCHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce---eccc--cCCCCcEEEEecCC-CChHH
Confidence 3578999998864311 1112355777789999999998873 21 1111 37899999998765 78887
Q ss_pred HHHHHhhcCcCccEEeccCCCC--CCH---HHHHHHH--hcCCCCCEEEcccCCCChhHHHHHHh--cCCCCcEEEeecc
Q 016845 207 LVDLAHGCGKSLKSLGIAACVK--ITD---VSLEAVG--SHCKSLETLSLDSEFIHNKGVHAVAQ--GCPLLRVLKLQCI 277 (381)
Q Consensus 207 ~~~~~~~~~~~L~~L~l~~~~~--~~~---~~~~~l~--~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~ 277 (381)
+..+.....|+|+.|++..+.. ..+ ..+..+. ..+|+|+.|.+.+|.+.+.....+.. .+|+|+.|+++.+
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 7777654458999999853211 011 1122221 25899999999998888766555553 4789999999999
Q ss_pred cCCHHHHHHHH---hcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 278 NVTDEALVAVG---NQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 329 (381)
Q Consensus 278 ~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 329 (381)
.+.+.+...+. ..+++|+.|+++++ .++++++..+.+.+ ...+++++..
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 99988766654 35789999999886 59999998888644 4567887643
No 61
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.16 E-value=4.2e-13 Score=115.59 Aligned_cols=224 Identities=16% Similarity=0.059 Sum_probs=140.8
Q ss_pred ccceeeChHHHHHHHh--cCCCccEEecCCCCCCChHHHHHHH-HhCCCCCEEEeeccccChhH----HHHHHhhCCCCC
Q 016845 120 SESYYLSDSGLNALAD--GFSKLEKLSLIWCSNISSLGLMSLA-QKCIHLKSLDLQGCYVGDQG----LAAVGKVCNQLE 192 (381)
Q Consensus 120 l~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~ 192 (381)
+....+++..+..+.+ .+++|++|++.++. ++......+. ..+++|++|+++++.++... ...+. .+++|+
T Consensus 71 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~ 148 (310)
T 4glp_A 71 VGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLK 148 (310)
T ss_dssp ECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCC
T ss_pred EeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCC
Confidence 3344556665554433 34789999998863 3221111111 46899999999999987521 12223 589999
Q ss_pred eEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHH--HHhcCCCCCEEEcccCCCChh--HHHHHHhcCCC
Q 016845 193 DLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEA--VGSHCKSLETLSLDSEFIHNK--GVHAVAQGCPL 268 (381)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~ 268 (381)
+|+++++. +...... .... .++|+.|+++++.-.....+.. ....+++|++|++++|.++.. ....++..+++
T Consensus 149 ~L~Ls~n~-l~~~~~~-~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~ 225 (310)
T 4glp_A 149 VLSIAQAH-SPAFSCE-QVRA-FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ 225 (310)
T ss_dssp EEEEECCS-SCCCCTT-SCCC-CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred EEEeeCCC-cchhhHH-Hhcc-CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence 99999876 3321111 1112 3799999999964333222221 124789999999999988632 22334567899
Q ss_pred CcEEEeecccCCHHHHHHHHh--cCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 016845 269 LRVLKLQCINVTDEALVAVGN--QCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKEL 346 (381)
Q Consensus 269 L~~L~l~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 346 (381)
|+.|+++.+.+.......+.. ..++|++|+++++. ++. +.. ..+++|+.|+++++. ++.-. ....+++|
T Consensus 226 L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~--lp~--~~~~~L~~L~Ls~N~-l~~~~---~~~~l~~L 296 (310)
T 4glp_A 226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQ--VPK--GLPAKLRVLDLSSNR-LNRAP---QPDELPEV 296 (310)
T ss_dssp CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCS--CCS--CCCSCCSCEECCSCC-CCSCC---CTTSCCCC
T ss_pred CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCc--hhh--hhcCCCCEEECCCCc-CCCCc---hhhhCCCc
Confidence 999999988876531111111 12799999998864 441 110 124799999999974 55321 13568999
Q ss_pred CEEeccCCCCCC
Q 016845 347 THLEINGCHNIG 358 (381)
Q Consensus 347 ~~L~l~~c~~~~ 358 (381)
+.|++++. .++
T Consensus 297 ~~L~L~~N-~l~ 307 (310)
T 4glp_A 297 DNLTLDGN-PFL 307 (310)
T ss_dssp SCEECSST-TTS
T ss_pred cEEECcCC-CCC
Confidence 99999984 444
No 62
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.16 E-value=1.3e-13 Score=130.22 Aligned_cols=156 Identities=19% Similarity=0.093 Sum_probs=85.7
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|++.++. +.... .....+++|+.|++++|.+........+..+++|+.|+++.+.+....... ...+++|+
T Consensus 376 ~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~ 451 (606)
T 3vq2_A 376 NSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-FLGLTSLN 451 (606)
T ss_dssp SCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT-TTTCTTCC
T ss_pred CcccEeECCCCc-cccch--hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh-hcCCCCCC
Confidence 566666666542 11111 112345667777776665443222122345677777777655543321111 22567788
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCcccee
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFC 375 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l 375 (381)
+|+++++. +++..+......+++|+.|++++|. ++.... ..+..+++|+.|++++| .++... ......+++|++|
T Consensus 452 ~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L 526 (606)
T 3vq2_A 452 TLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQ-LEQISW-GVFDTLHRLQLLNMSHN-NLLFLD-SSHYNQLYSLSTL 526 (606)
T ss_dssp EEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS-CCSCEE-GGGTTTCTTCCEE
T ss_pred EEECCCCc-CCCcchHHhhccCCCCCEEECCCCc-CCccCh-hhhcccccCCEEECCCC-cCCCcC-HHHccCCCcCCEE
Confidence 88887753 3321122223457888888888863 443211 12345888999999886 344322 2223467889998
Q ss_pred EcccC
Q 016845 376 RLNLN 380 (381)
Q Consensus 376 ~l~~~ 380 (381)
++..+
T Consensus 527 ~l~~N 531 (606)
T 3vq2_A 527 DCSFN 531 (606)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 88765
No 63
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=3.9e-12 Score=123.08 Aligned_cols=157 Identities=14% Similarity=0.054 Sum_probs=86.8
Q ss_pred cCCCccEEecCCCCCCChH----------------HHHHHHH--hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEecc
Q 016845 136 GFSKLEKLSLIWCSNISSL----------------GLMSLAQ--KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLR 197 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 197 (381)
.+++|+.|+++++ .++.. .++..+. ++++|+.|+|++|.+..... .....+++|+.|+++
T Consensus 446 ~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 446 RLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIA 523 (876)
T ss_dssp GCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECT
T ss_pred cCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECc
Confidence 4778888888775 34431 1333333 67788888888876544322 223457788888887
Q ss_pred CCCCCCh-HH---HHHHH--hhcCcCccEEeccCCCCCCHHHHHH--HHhcCCCCCEEEcccCCCChhHHHHHHhcCCCC
Q 016845 198 FCEGLTD-TG---LVDLA--HGCGKSLKSLGIAACVKITDVSLEA--VGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLL 269 (381)
Q Consensus 198 ~~~~~~~-~~---~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 269 (381)
++..++. .. +..+. ....++|+.|+++++ .+.. +.. ....+++|+.|++++|.+.. +. .+..+++|
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~--ip~~~~l~~L~~L~~L~Ls~N~l~~--lp-~~~~L~~L 597 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE--FPASASLQKMVKLGLLDCVHNKVRH--LE-AFGTNVKL 597 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCB--CCCHHHHTTCTTCCEEECTTSCCCB--CC-CCCTTSEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCc--cCChhhhhcCCCCCEEECCCCCccc--ch-hhcCCCcc
Confidence 7653443 11 21111 011247888888775 3331 211 23467778888887776652 22 33456677
Q ss_pred cEEEeecccCCHHHHHHHHhcCCC-CCeEeccCC
Q 016845 270 RVLKLQCINVTDEALVAVGNQCLS-LELLALYSF 302 (381)
Q Consensus 270 ~~L~l~~~~~~~~~l~~l~~~~~~-L~~L~l~~~ 302 (381)
+.|+++.+.+. .+......+++ |+.|+++++
T Consensus 598 ~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 598 TDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp SEEECCSSCCS--CCCTTSCEECTTCCEEECCSS
T ss_pred eEEECcCCccc--cchHHHhhccccCCEEECcCC
Confidence 77777666554 11111224455 777777664
No 64
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.14 E-value=1.5e-13 Score=118.44 Aligned_cols=228 Identities=13% Similarity=0.019 Sum_probs=133.1
Q ss_pred hcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhc
Q 016845 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (381)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 214 (381)
..+++|+.|+++++..+... ++..+..+++|++|+++++.++...... ...+++|++|+++++. +..... .....
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~-l~~~~p-~~~~~- 147 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNA-LSGTLP-PSISS- 147 (313)
T ss_dssp GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSE-EESCCC-GGGGG-
T ss_pred hCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCCc-cCCcCC-hHHhc-
Confidence 35788999999842222211 1222357889999999988876432222 3457889999998765 221100 11122
Q ss_pred CcCccEEeccCCCCCCHHHHHHHHhcCC-CCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCC
Q 016845 215 GKSLKSLGIAACVKITDVSLEAVGSHCK-SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLS 293 (381)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 293 (381)
.++|+.|++.++. +.......+ ..++ +|+.|++++|.+....... +..++ |+.|+++.+.+...... ....+++
T Consensus 148 l~~L~~L~L~~N~-l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~ 222 (313)
T 1ogq_A 148 LPNLVGITFDGNR-ISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNMLEGDASV-LFGSDKN 222 (313)
T ss_dssp CTTCCEEECCSSC-CEEECCGGG-GCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSSEEEECCGG-GCCTTSC
T ss_pred CCCCCeEECcCCc-ccCcCCHHH-hhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCCcccCcCCH-HHhcCCC
Confidence 3789999998853 321111222 3555 8999999887665322111 23344 99999987665432111 2235788
Q ss_pred CCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccc
Q 016845 294 LELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYAS 373 (381)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~ 373 (381)
|+.|+++++. ++.. ... ...+++|++|+++++. ++.. +...+..+++|+.|+++++. ++.. +... ..+++|+
T Consensus 223 L~~L~L~~N~-l~~~-~~~-~~~l~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~L~Ls~N~-l~~~-ip~~-~~l~~L~ 294 (313)
T 1ogq_A 223 TQKIHLAKNS-LAFD-LGK-VGLSKNLNGLDLRNNR-IYGT-LPQGLTQLKFLHSLNVSFNN-LCGE-IPQG-GNLQRFD 294 (313)
T ss_dssp CSEEECCSSE-ECCB-GGG-CCCCTTCCEEECCSSC-CEEC-CCGGGGGCTTCCEEECCSSE-EEEE-CCCS-TTGGGSC
T ss_pred CCEEECCCCc-eeee-cCc-ccccCCCCEEECcCCc-ccCc-CChHHhcCcCCCEEECcCCc-cccc-CCCC-ccccccC
Confidence 9999998864 3211 111 3457889999999864 4422 12223568899999999863 3321 1112 4567787
Q ss_pred eeEcccC
Q 016845 374 FCRLNLN 380 (381)
Q Consensus 374 ~l~l~~~ 380 (381)
.+++.-|
T Consensus 295 ~l~l~~N 301 (313)
T 1ogq_A 295 VSAYANN 301 (313)
T ss_dssp GGGTCSS
T ss_pred hHHhcCC
Confidence 7776544
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.14 E-value=6.7e-12 Score=108.35 Aligned_cols=208 Identities=21% Similarity=0.177 Sum_probs=112.0
Q ss_pred HHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHH
Q 016845 155 GLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSL 234 (381)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 234 (381)
.+..+...+++|++|+++++.++......+ ..+++|+.|+++++. +.... . ... .++|+.|+++++. ++....
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~--~-~~~-l~~L~~L~Ls~n~-l~~l~~ 97 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNV-LYETL--D-LES-LSTLRTLDLNNNY-VQELLV 97 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHH-TTCTTCCEEECTTSC-CEEEE--E-ETT-CTTCCEEECCSSE-EEEEEE
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHh-hCCCcCCEEECCCCc-CCcch--h-hhh-cCCCCEEECcCCc-cccccC
Confidence 344555667899999999999876443344 468999999999876 33211 1 222 2788888887752 221100
Q ss_pred --------------HH-HHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEec
Q 016845 235 --------------EA-VGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLAL 299 (381)
Q Consensus 235 --------------~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l 299 (381)
.. ....+++|++|++++|.+..... ..+..+++|+.|+++.+.+.......+...+++|++|++
T Consensus 98 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 98 GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 00 00123444555555444433211 112234566666666555544322233334566777777
Q ss_pred cCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEccc
Q 016845 300 YSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNL 379 (381)
Q Consensus 300 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~ 379 (381)
+++. ++.. .. ...+++|++|+++++. ++.-. .-+..+++|+.|+++++ .++. +......+++|+.|+++.
T Consensus 177 ~~N~-l~~~--~~-~~~l~~L~~L~Ls~N~-l~~l~--~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 177 QYNF-IYDV--KG-QVVFAKLKTLDLSSNK-LAFMG--PEFQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp TTSC-CCEE--EC-CCCCTTCCEEECCSSC-CCEEC--GGGGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEECTT
T ss_pred CCCc-Cccc--cc-ccccccCCEEECCCCc-CCcch--hhhcccCcccEEECcCC-cccc--hhhHhhcCCCCCEEEccC
Confidence 6643 2211 00 0126677777777753 43211 11345677777777775 3442 222235667788777765
Q ss_pred C
Q 016845 380 N 380 (381)
Q Consensus 380 ~ 380 (381)
|
T Consensus 247 N 247 (317)
T 3o53_A 247 N 247 (317)
T ss_dssp C
T ss_pred C
Confidence 4
No 66
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.14 E-value=8.4e-14 Score=120.02 Aligned_cols=204 Identities=11% Similarity=0.011 Sum_probs=88.9
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|++.++ .++. .+...+..+++|++|+++++.+....... ...+++|++|+++++. +....... .....
T Consensus 99 ~l~~L~~L~Ls~n-~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~-l~~~~p~~-l~~l~ 173 (313)
T 1ogq_A 99 KLTQLHYLYITHT-NVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNR-ISGAIPDS-YGSFS 173 (313)
T ss_dssp GCTTCSEEEEEEE-CCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSC-CEEECCGG-GGCCC
T ss_pred cCCCCCEEECcCC-eeCC-cCCHHHhCCCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCc-ccCcCCHH-Hhhhh
Confidence 3566666666554 2221 01112235666666666666554321111 2345666666666554 22110001 11111
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|++.++. +.......+ ..++ |+.|++++|.+.... ...+..+++|+.|+++.+.+..... . ...+++|+
T Consensus 174 ~~L~~L~L~~N~-l~~~~~~~~-~~l~-L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~-~-~~~l~~L~ 247 (313)
T 1ogq_A 174 KLFTSMTISRNR-LTGKIPPTF-ANLN-LAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLG-K-VGLSKNLN 247 (313)
T ss_dssp TTCCEEECCSSE-EEEECCGGG-GGCC-CSEEECCSSEEEECC-GGGCCTTSCCSEEECCSSEECCBGG-G-CCCCTTCC
T ss_pred hcCcEEECcCCe-eeccCChHH-hCCc-ccEEECcCCcccCcC-CHHHhcCCCCCEEECCCCceeeecC-c-ccccCCCC
Confidence 256666666531 111111111 2333 666666665543221 1223345666666666555432111 1 12346666
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCH 355 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 355 (381)
+|+++++. ++.... .....+++|++|+++++. ++.. +... ..+++|+.+++.+++
T Consensus 248 ~L~Ls~N~-l~~~~p-~~l~~l~~L~~L~Ls~N~-l~~~-ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 248 GLDLRNNR-IYGTLP-QGLTQLKFLHSLNVSFNN-LCGE-IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCSSC-CEECCC-GGGGGCTTCCEEECCSSE-EEEE-CCCS-TTGGGSCGGGTCSSS
T ss_pred EEECcCCc-ccCcCC-hHHhcCcCCCEEECcCCc-cccc-CCCC-ccccccChHHhcCCC
Confidence 66666543 221111 112235666666666642 2211 0011 235566666666544
No 67
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.13 E-value=2.2e-12 Score=114.94 Aligned_cols=223 Identities=18% Similarity=0.096 Sum_probs=125.3
Q ss_pred hcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhc
Q 016845 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (381)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 214 (381)
..+++|+.|++.++ .++... ...+..+++|++|+++++.++.... .....+++|++|+++++. +..... .....
T Consensus 66 ~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~l~~-~~~~~- 139 (390)
T 3o6n_A 66 DSFRQVELLNLNDL-QIEEID-TYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERND-LSSLPR-GIFHN- 139 (390)
T ss_dssp HHCCCCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTT-
T ss_pred cccccCcEEECCCC-cccccC-hhhccCCCCcCEEECCCCCCCcCCH-HHhcCCCCCCEEECCCCc-cCcCCH-HHhcC-
Confidence 45899999999876 333221 1123478999999999998765322 223458999999999875 332111 11122
Q ss_pred CcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEe--------------------
Q 016845 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKL-------------------- 274 (381)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-------------------- 274 (381)
.++|+.|++.++ .+....... ...+++|++|+++++.+....+ ..+++|+.|++
T Consensus 140 l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~ 213 (390)
T 3o6n_A 140 TPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSNRLTHVDL----SLIPSLFHANVSYNLLSTLAIPIAVEELDAS 213 (390)
T ss_dssp CTTCCEEECCSS-CCCBCCTTT-TSSCTTCCEEECCSSCCSBCCG----GGCTTCSEEECCSSCCSEEECCSSCSEEECC
T ss_pred CCCCcEEECCCC-ccCccChhh-ccCCCCCCEEECCCCcCCcccc----ccccccceeecccccccccCCCCcceEEECC
Confidence 379999999985 333222112 2478999999999987765432 22344444333
Q ss_pred --------------------ecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHH
Q 016845 275 --------------------QCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDM 334 (381)
Q Consensus 275 --------------------~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~ 334 (381)
+.+.+.+. . ....+++|++|+++++. ++..... ....+++|++|+++++. ++.
T Consensus 214 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~- 286 (390)
T 3o6n_A 214 HNSINVVRGPVNVELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNE-LEKIMYH-PFVKMQRLERLYISNNR-LVA- 286 (390)
T ss_dssp SSCCCEEECCCCSSCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSC-CCEEESG-GGTTCSSCCEEECCSSC-CCE-
T ss_pred CCeeeeccccccccccEEECCCCCCccc--H-HHcCCCCccEEECCCCc-CCCcChh-HccccccCCEEECCCCc-Ccc-
Confidence 33333221 1 12245666666666542 3221111 12236667777777653 332
Q ss_pred HHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 335 GLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 335 ~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
+......+++|+.|++++|. ++. +..-...+++|+.|++..+
T Consensus 287 -~~~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 287 -LNLYGQPIPTLKVLDLSHNH-LLH--VERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp -EECSSSCCTTCCEEECCSSC-CCC--CGGGHHHHTTCSEEECCSS
T ss_pred -cCcccCCCCCCCEEECCCCc-cee--cCccccccCcCCEEECCCC
Confidence 11112346777778777763 332 1111234577888877654
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.13 E-value=5.6e-13 Score=124.92 Aligned_cols=204 Identities=20% Similarity=0.120 Sum_probs=99.9
Q ss_pred CCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHH-HHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcC
Q 016845 163 CIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTG-LVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (381)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 241 (381)
+++|+.|++.++.+...... ..+++|+.|+++++. +.... .......+ ++|+.|+++++. +...... ...+
T Consensus 324 l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~-~~L~~L~l~~n~-l~~~~~~--~~~l 395 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNG-LSFKGCCSQSDFGT-TSLKYLDLSFNG-VITMSSN--FLGL 395 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSC-CBEEEEEEHHHHTC-SCCCEEECCSCS-EEEEEEE--EETC
T ss_pred ccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCc-cCcccccccccccc-CccCEEECCCCc-ccccccc--cccc
Confidence 44555555555443221110 345666666666554 22111 00111222 567777776642 1111100 2356
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (381)
++|++|+++++.+........+..+++|+.|+++.+.+...... ....+++|++|+++++. +++..+......+++|+
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLT 473 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCC
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh-hhhcCCcCcEEECcCCc-CccccchhhhhcccCCC
Confidence 67777777666543322112234567777777765544321111 12246777777777653 22111112233467777
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 322 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
.|++++|. +++.... .+..+++|+.|++++| .++... ......+++|+.|++..|
T Consensus 474 ~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 474 FLDLSQCQ-LEQLSPT-AFNSLSSLQVLNMASN-QLKSVP-DGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EEECTTSC-CCEECTT-TTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred EEECCCCc-cccCChh-hhhcccCCCEEeCCCC-cCCCCC-HHHhhcccCCcEEEecCC
Confidence 77777763 4432111 1234777888888775 333321 122346777777777654
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.12 E-value=2.4e-13 Score=127.39 Aligned_cols=224 Identities=16% Similarity=0.134 Sum_probs=140.6
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|++.++. ++ .+......+ +|++|+++++.+..- .. ..+++|+.|++.++........ . ..
T Consensus 280 ~l~~L~~L~l~~~~-l~--~l~~~~~~~-~L~~L~l~~n~~~~l--~~--~~l~~L~~L~l~~n~~~~~~~~----~-~~ 346 (570)
T 2z63_A 280 CLTNVSSFSLVSVT-IE--RVKDFSYNF-GWQHLELVNCKFGQF--PT--LKLKSLKRLTFTSNKGGNAFSE----V-DL 346 (570)
T ss_dssp GGTTCSEEEEESCE-EC--SCCBCCSCC-CCSEEEEESCBCSSC--CB--CBCSSCCEEEEESCBSCCBCCC----C-BC
T ss_pred CcCcccEEEecCcc-ch--hhhhhhccC-CccEEeeccCccccc--Cc--ccccccCEEeCcCCcccccccc----c-cC
Confidence 46788888887652 22 122223345 888888888876521 11 3578899999887653221111 2 23
Q ss_pred cCccEEeccCCCCCCHHH-HHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCC
Q 016845 216 KSLKSLGIAACVKITDVS-LEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 294 (381)
++|+.|+++++. +.... .......+++|++|++++|.+...... +..+++|+.|+++.+.+...........+++|
T Consensus 347 ~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 347 PSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp TTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred CCCCEEeCcCCc-cCccccccccccccCccCEEECCCCcccccccc--ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 799999998853 33221 011224789999999998876542211 45689999999986665432111122367899
Q ss_pred CeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccce
Q 016845 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASF 374 (381)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~ 374 (381)
++|+++++. +... .......+++|++|++++|. +++..+...+..+++|+.|++++| .++...... ...+++|++
T Consensus 424 ~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~ 498 (570)
T 2z63_A 424 IYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQV 498 (570)
T ss_dssp CEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCE
T ss_pred CEEeCcCCc-cccc-chhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCC-ccccCChhh-hhcccCCCE
Confidence 999998864 2211 11223458999999999974 443222233456899999999997 444432222 347899999
Q ss_pred eEcccC
Q 016845 375 CRLNLN 380 (381)
Q Consensus 375 l~l~~~ 380 (381)
|++..+
T Consensus 499 L~l~~n 504 (570)
T 2z63_A 499 LNMASN 504 (570)
T ss_dssp EECCSS
T ss_pred EeCCCC
Confidence 999765
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.11 E-value=7.1e-13 Score=115.36 Aligned_cols=222 Identities=15% Similarity=0.082 Sum_probs=103.8
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|++.++ .++... ...+..+++|++|+++++.++.-. . ...++|++|+++++. +..... ..... .
T Consensus 76 ~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~--~--~~~~~L~~L~l~~n~-i~~~~~-~~~~~-l 146 (332)
T 2ft3_A 76 GLQHLYALVLVNN-KISKIH-EKAFSPLRKLQKLYISKNHLVEIP--P--NLPSSLVELRIHDNR-IRKVPK-GVFSG-L 146 (332)
T ss_dssp TCTTCCEEECCSS-CCCEEC-GGGSTTCTTCCEEECCSSCCCSCC--S--SCCTTCCEEECCSSC-CCCCCS-GGGSS-C
T ss_pred CCCCCcEEECCCC-ccCccC-HhHhhCcCCCCEEECCCCcCCccC--c--cccccCCEEECCCCc-cCccCH-hHhCC-C
Confidence 3556666666554 222110 111234566666666666544210 0 012456666665543 221100 00111 2
Q ss_pred cCccEEeccCCCCCCHHHH-HHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCC
Q 016845 216 KSLKSLGIAACVKITDVSL-EAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 294 (381)
++|+.|++.++ .+...+. ......+ +|+.|+++++.+..... ...++|+.|+++.+.+.......+ ..+++|
T Consensus 147 ~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~----~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L 219 (332)
T 2ft3_A 147 RNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK----DLPETLNELHLDHNKIQAIELEDL-LRYSKL 219 (332)
T ss_dssp SSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS----SSCSSCSCCBCCSSCCCCCCTTSS-TTCTTC
T ss_pred ccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCCCCccCc----cccCCCCEEECCCCcCCccCHHHh-cCCCCC
Confidence 56666666653 2221100 0001122 56666666655433110 112567777776665543221122 246778
Q ss_pred CeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhc-----C
Q 016845 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKF-----C 369 (381)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~-----~ 369 (381)
++|+++++. ++...... ...+++|++|+++++. ++. +..-+..+++|+.|+++++ .++..+...+... .
T Consensus 220 ~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~ 293 (332)
T 2ft3_A 220 YRLGLGHNQ-IRMIENGS-LSFLPTLRELHLDNNK-LSR--VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKR 293 (332)
T ss_dssp SCCBCCSSC-CCCCCTTG-GGGCTTCCEEECCSSC-CCB--CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSS
T ss_pred CEEECCCCc-CCcCChhH-hhCCCCCCEEECCCCc-Cee--cChhhhcCccCCEEECCCC-CCCccChhHcccccccccc
Confidence 888887753 32211111 2347788888888763 442 2222345788888888874 4544333322221 4
Q ss_pred CccceeEccc
Q 016845 370 RYASFCRLNL 379 (381)
Q Consensus 370 ~~L~~l~l~~ 379 (381)
+.|+.|.+.-
T Consensus 294 ~~l~~L~l~~ 303 (332)
T 2ft3_A 294 AYYNGISLFN 303 (332)
T ss_dssp CCBSEEECCS
T ss_pred ccccceEeec
Confidence 5677776654
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.11 E-value=2.4e-12 Score=121.02 Aligned_cols=116 Identities=17% Similarity=0.118 Sum_probs=76.4
Q ss_pred HhcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhh
Q 016845 134 ADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHG 213 (381)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 213 (381)
...+++|+.|++.++ .++... ...+..+++|++|+|+++.++.... .....+++|+.|+++++. +.... ......
T Consensus 71 ~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~l~-~~~~~~ 145 (597)
T 3oja_B 71 LDSFRQVELLNLNDL-QIEEID-TYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERND-LSSLP-RGIFHN 145 (597)
T ss_dssp HHHCCCCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-TTTTTT
T ss_pred HccCCCCcEEECCCC-CCCCCC-hHHhcCCCCCCEEECCCCcCCCCCH-HHHcCCCCCCEEEeeCCC-CCCCC-HHHhcc
Confidence 345899999999986 343221 1123478999999999998765332 233468999999999876 33211 111122
Q ss_pred cCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChh
Q 016845 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNK 257 (381)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 257 (381)
.++|+.|+++++ .+....... ...+++|+.|++++|.+...
T Consensus 146 -l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 146 -TPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp -CTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECTTSCCSBC
T ss_pred -CCCCCEEEeeCC-cCCCCChhh-hhcCCcCcEEECcCCCCCCc
Confidence 379999999986 333322212 24789999999999877653
No 72
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.08 E-value=3.7e-12 Score=120.55 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=85.6
Q ss_pred cCCCccEEecCCCCCCChH----------------HHHHHHH--hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEecc
Q 016845 136 GFSKLEKLSLIWCSNISSL----------------GLMSLAQ--KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLR 197 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 197 (381)
.+++|+.|+++++ .++.. .++..+. ++++|++|++++|.+...... ....+++|++|+++
T Consensus 204 ~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 204 RLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVA 281 (636)
T ss_dssp GCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECT
T ss_pred cccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECc
Confidence 4788888888875 34431 1333333 678888888888875543222 23357788888888
Q ss_pred CCCCCCh-HHHHHHHh----hcCcCccEEeccCCCCCCHHHHHH--HHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCc
Q 016845 198 FCEGLTD-TGLVDLAH----GCGKSLKSLGIAACVKITDVSLEA--VGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLR 270 (381)
Q Consensus 198 ~~~~~~~-~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 270 (381)
++..++. .....+.. ...++|+.|++.++ .++. +.. ....+++|+.|++++|.+... +. .+..+++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~--ip~~~~l~~l~~L~~L~L~~N~l~g~-ip-~~~~l~~L~ 356 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT--FPVETSLQKMKKLGMLECLYNQLEGK-LP-AFGSEIKLA 356 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS--CCCHHHHTTCTTCCEEECCSCCCEEE-CC-CCEEEEEES
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCc--cCchhhhccCCCCCEEeCcCCcCccc-hh-hhCCCCCCC
Confidence 7653443 22112211 01267888888875 3331 211 234678888888887766511 11 223345566
Q ss_pred EEEeecccCCHHHHHHHHhcCCC-CCeEeccCC
Q 016845 271 VLKLQCINVTDEALVAVGNQCLS-LELLALYSF 302 (381)
Q Consensus 271 ~L~l~~~~~~~~~l~~l~~~~~~-L~~L~l~~~ 302 (381)
.|+++.+.+. .+..-...+++ |++|+++++
T Consensus 357 ~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 357 SLNLAYNQIT--EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp EEECCSSEEE--ECCTTSEEECTTCCEEECCSS
T ss_pred EEECCCCccc--cccHhhhhhcccCcEEEccCC
Confidence 6666554443 11111123444 666665553
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.08 E-value=1.9e-10 Score=104.20 Aligned_cols=202 Identities=15% Similarity=0.070 Sum_probs=146.6
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
+++|+.|+++++ .++.. . .+..+++|++|+++++.+++.. ...+++|++|+++++. +.... ... .+
T Consensus 41 l~~L~~L~Ls~n-~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~-l~~~~----~~~-l~ 106 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDM--T-GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNK-LTNLD----VTP-LT 106 (457)
T ss_dssp HTTCCEEECCSS-CCCCC--T-TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC-CSCCC----CTT-CT
T ss_pred cCCCCEEEccCC-CcccC--h-hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCC-Cceee----cCC-CC
Confidence 689999999986 34432 2 2457899999999999987642 3468999999999876 44322 223 37
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeeccc-CCHHHHHHHHhcCCCCC
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSLE 295 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~l~~l~~~~~~L~ 295 (381)
+|+.|+++++ .+.... ...+++|++|++++|.+.... +..+++|+.|+++.+. +... . ...+++|+
T Consensus 107 ~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~---~-~~~l~~L~ 173 (457)
T 3bz5_A 107 KLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL---D-VTPQTQLT 173 (457)
T ss_dssp TCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC---C-CTTCTTCC
T ss_pred cCCEEECCCC-cCCeec----CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc---c-cccCCcCC
Confidence 9999999986 344322 357899999999999887632 4568999999998663 3321 1 22578999
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCcccee
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFC 375 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l 375 (381)
+|+++++. ++.-. ...+++|+.|+++++. ++... +..+++|+.|+++++ .++. +. ...+++|+.|
T Consensus 174 ~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N~-l~~~~----l~~l~~L~~L~Ls~N-~l~~--ip--~~~l~~L~~L 238 (457)
T 3bz5_A 174 TLDCSFNK-ITELD----VSQNKLLNRLNCDTNN-ITKLD----LNQNIQLTFLDCSSN-KLTE--ID--VTPLTQLTYF 238 (457)
T ss_dssp EEECCSSC-CCCCC----CTTCTTCCEEECCSSC-CSCCC----CTTCTTCSEEECCSS-CCSC--CC--CTTCTTCSEE
T ss_pred EEECCCCc-cceec----cccCCCCCEEECcCCc-CCeec----cccCCCCCEEECcCC-cccc--cC--ccccCCCCEE
Confidence 99999864 44321 3458999999999974 55432 456899999999996 4544 22 5578999999
Q ss_pred EcccC
Q 016845 376 RLNLN 380 (381)
Q Consensus 376 ~l~~~ 380 (381)
++..+
T Consensus 239 ~l~~N 243 (457)
T 3bz5_A 239 DCSVN 243 (457)
T ss_dssp ECCSS
T ss_pred EeeCC
Confidence 98765
No 74
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.07 E-value=5.5e-10 Score=94.94 Aligned_cols=143 Identities=22% Similarity=0.157 Sum_probs=63.4
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
+++|+.|++.++. ++.. .. ...+++|+.|+++++.+++... ...+++|+.|+++++. +.... . ... .+
T Consensus 45 l~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~--~-l~~-l~ 112 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENK-VKDLS--S-LKD-LK 112 (291)
T ss_dssp HHTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCGG--G-GTT-CT
T ss_pred cCcccEEEccCCC-cccC--hh-HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCc-CCCCh--h-hcc-CC
Confidence 3556666666542 2211 11 2356666666666666554221 3345666666666554 22211 1 111 14
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCe
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (381)
+|+.|+++++ .+.+. .. ...+++|+.|++++|.+... ..+..+++|+.|+++.+.+.+... ...+++|++
T Consensus 113 ~L~~L~L~~n-~i~~~--~~-l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~ 182 (291)
T 1h6t_A 113 KLKSLSLEHN-GISDI--NG-LVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQN 182 (291)
T ss_dssp TCCEEECTTS-CCCCC--GG-GGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred CCCEEECCCC-cCCCC--hh-hcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh---hcCCCccCE
Confidence 5555555553 22221 11 12455555555555544332 122334555555554444432111 223444555
Q ss_pred EeccC
Q 016845 297 LALYS 301 (381)
Q Consensus 297 L~l~~ 301 (381)
|++++
T Consensus 183 L~L~~ 187 (291)
T 1h6t_A 183 LYLSK 187 (291)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 55544
No 75
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.06 E-value=2.4e-10 Score=91.32 Aligned_cols=148 Identities=19% Similarity=0.132 Sum_probs=74.9
Q ss_pred CCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCC
Q 016845 188 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 267 (381)
Q Consensus 188 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 267 (381)
+++|+.|+++++. +.+-. . ... .++|+.|++.++ .+.... . ...+++|++|++++|.+....... +..++
T Consensus 43 l~~L~~L~l~~n~-i~~l~--~-l~~-l~~L~~L~l~~n-~~~~~~--~-l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~ 112 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDLT--G-IEY-AHNIKDLTINNI-HATNYN--P-ISGLSNLERLRIMGKDVTSDKIPN-LSGLT 112 (197)
T ss_dssp HHTCCEEEEESSC-CSCCT--T-GGG-CTTCSEEEEESC-CCSCCG--G-GTTCTTCCEEEEECTTCBGGGSCC-CTTCT
T ss_pred cCCccEEeccCCC-ccChH--H-Hhc-CCCCCEEEccCC-CCCcch--h-hhcCCCCCEEEeECCccCcccChh-hcCCC
Confidence 4567777777654 33211 1 122 256777777665 332221 1 235666777777666655422222 23456
Q ss_pred CCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 268 LLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELT 347 (381)
Q Consensus 268 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 347 (381)
+|+.|+++.+.+.+.....+. .+++|++|+++++..+++.. ....+++|++|++++|. +++-. .+..+++|+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~ 184 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLN 184 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCC
T ss_pred CCCEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcChH---HhccCCCCC
Confidence 666666666666543333333 45666666666654233221 12345666666666643 33311 223456666
Q ss_pred EEeccC
Q 016845 348 HLEING 353 (381)
Q Consensus 348 ~L~l~~ 353 (381)
.|++++
T Consensus 185 ~L~l~~ 190 (197)
T 4ezg_A 185 QLYAFS 190 (197)
T ss_dssp EEEECB
T ss_pred EEEeeC
Confidence 666665
No 76
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=1.6e-11 Score=118.79 Aligned_cols=35 Identities=9% Similarity=-0.062 Sum_probs=16.8
Q ss_pred CCCCEEEeeccccChhHHHH--HHhhCCCCCeEeccCCC
Q 016845 164 IHLKSLDLQGCYVGDQGLAA--VGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~ 200 (381)
++|+.|++++|.+. .++. ....+++|+.|+++++.
T Consensus 548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSC
T ss_pred CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCC
Confidence 35666666555544 1211 22335555555555443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.05 E-value=8.5e-12 Score=105.19 Aligned_cols=176 Identities=19% Similarity=0.111 Sum_probs=80.0
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
+++|+.|.+.++. ++.. .. ...+++|++|+++++.+.+. . ....+++|++|+++++. +..... ..... .+
T Consensus 40 l~~L~~L~l~~~~-i~~~--~~-l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~-l~~~~~-~~~~~-l~ 109 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKSV--QG-IQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQ-LQSLPN-GVFDK-LT 109 (272)
T ss_dssp HTTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSC-CCCCCT-TTTTT-CT
T ss_pred ccceeeeeeCCCC-cccc--cc-cccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCc-cCccCh-hHhcC-Cc
Confidence 4667777776652 2211 11 23567777777777766542 1 22346677777776654 221110 00111 25
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCe
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (381)
+|+.|++.++. +..... .....+++|++|++++|.+..... ..+..+++|+.|+++.+.+..... .....+++|++
T Consensus 110 ~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 185 (272)
T 3rfs_A 110 NLKELVLVENQ-LQSLPD-GVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKD 185 (272)
T ss_dssp TCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred CCCEEECCCCc-CCccCH-HHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCH-HHhcCCccCCE
Confidence 66666666542 221111 111345666666666655442211 112345566666665554432111 11123455555
Q ss_pred EeccCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 016845 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDC 328 (381)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (381)
|+++++. ++... ......+++|+.|+++++
T Consensus 186 L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 186 LRLYQNQ-LKSVP-DGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp EECCSSC-CSCCC-TTTTTTCTTCCEEECCSS
T ss_pred EECCCCc-CCccC-HHHHhCCcCCCEEEccCC
Confidence 5555532 22110 011223455555555554
No 78
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.05 E-value=9.8e-11 Score=93.54 Aligned_cols=150 Identities=17% Similarity=0.124 Sum_probs=98.6
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcC
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 241 (381)
.+++|++|+++++.+.+-. . ...+++|++|+++++. +.... . ... .++|+.|+++++ .+.+.....+ ..+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~l~~n~-~~~~~--~-l~~-l~~L~~L~l~~n-~l~~~~~~~l-~~l 111 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--G-IEYAHNIKDLTINNIH-ATNYN--P-ISG-LSNLERLRIMGK-DVTSDKIPNL-SGL 111 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--T-GGGCTTCSEEEEESCC-CSCCG--G-GTT-CTTCCEEEEECT-TCBGGGSCCC-TTC
T ss_pred hcCCccEEeccCCCccChH--H-HhcCCCCCEEEccCCC-CCcch--h-hhc-CCCCCEEEeECC-ccCcccChhh-cCC
Confidence 4578889999888876422 2 3457889999988874 33321 1 222 278899988884 4443333333 467
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeeccc-CCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKL 320 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 320 (381)
++|++|++++|.+.+.....+ ..+++|+.|+++.+. +.+.. . ...+++|++|+++++. +++.. ....+++|
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L 183 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFDG-VHDYR---GIEDFPKL 183 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTBC-CCCCT---TGGGCSSC
T ss_pred CCCCEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH--h-hcCCCCCCEEECCCCC-CcChH---HhccCCCC
Confidence 889999998888876554443 468889999998665 55422 2 3367889999998864 44321 23458889
Q ss_pred CEEeccCCC
Q 016845 321 KNLTLSDCY 329 (381)
Q Consensus 321 ~~L~l~~~~ 329 (381)
++|+++++.
T Consensus 184 ~~L~l~~N~ 192 (197)
T 4ezg_A 184 NQLYAFSQT 192 (197)
T ss_dssp CEEEECBC-
T ss_pred CEEEeeCcc
Confidence 999988753
No 79
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.04 E-value=1e-12 Score=114.27 Aligned_cols=227 Identities=13% Similarity=0.029 Sum_probs=140.4
Q ss_pred hcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhc
Q 016845 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (381)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 214 (381)
..+++|+.|+++++ .++. +.. ...++|++|+++++.+.... ......+++|+.|+++++. +...+.....-..
T Consensus 99 ~~l~~L~~L~L~~n-~l~~--l~~--~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~ 171 (332)
T 2ft3_A 99 SPLRKLQKLYISKN-HLVE--IPP--NLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDG 171 (332)
T ss_dssp TTCTTCCEEECCSS-CCCS--CCS--SCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCS
T ss_pred hCcCCCCEEECCCC-cCCc--cCc--cccccCCEEECCCCccCccC-HhHhCCCccCCEEECCCCc-cccCCCCcccccC
Confidence 45799999999876 3331 111 12379999999999876432 2223468999999999876 3321111110011
Q ss_pred CcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCC
Q 016845 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (381)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 294 (381)
.+|+.|+++++. ++... ....++|++|++++|.+...... .+..+++|+.|+++.+.+.......+ ..+++|
T Consensus 172 -l~L~~L~l~~n~-l~~l~----~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L 243 (332)
T 2ft3_A 172 -LKLNYLRISEAK-LTGIP----KDLPETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTL 243 (332)
T ss_dssp -CCCSCCBCCSSB-CSSCC----SSSCSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGG-GGCTTC
T ss_pred -CccCEEECcCCC-CCccC----ccccCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHh-hCCCCC
Confidence 278899998852 22211 01236899999999877653322 23457899999998877754322222 367999
Q ss_pred CeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHh-----cCCCCCEEeccCCCCCChHHHHHHHhcC
Q 016845 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT-----GCKELTHLEINGCHNIGTMGLESIGKFC 369 (381)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~-----~~~~L~~L~l~~c~~~~~~~~~~l~~~~ 369 (381)
++|+++++. ++. +..-...+++|+.|+++++. ++......+.. ..+.|+.|++.+++.............+
T Consensus 244 ~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 244 RELHLDNNK-LSR--VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp CEEECCSSC-CCB--CCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred CEEECCCCc-Cee--cChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 999999864 431 11113458999999999863 55433222222 1467999999997643222223345678
Q ss_pred CccceeEcccC
Q 016845 370 RYASFCRLNLN 380 (381)
Q Consensus 370 ~~L~~l~l~~~ 380 (381)
++|+.+.++-+
T Consensus 320 ~~L~~l~l~~n 330 (332)
T 2ft3_A 320 TDRLAIQFGNY 330 (332)
T ss_dssp CCSTTEEC---
T ss_pred chhhhhhcccc
Confidence 99999988755
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.03 E-value=2e-11 Score=114.08 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=7.6
Q ss_pred CCceEeeecCce
Q 016845 70 ANVKSIHIDERL 81 (381)
Q Consensus 70 ~~~~~l~~~~~~ 81 (381)
++++.+++....
T Consensus 52 ~~L~~L~Ls~N~ 63 (562)
T 3a79_B 52 PRTKALSLSQNS 63 (562)
T ss_dssp TTCCEEECCSSC
T ss_pred CCcCEEECCCCC
Confidence 567777776543
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.03 E-value=1.2e-11 Score=112.96 Aligned_cols=222 Identities=19% Similarity=0.126 Sum_probs=152.3
Q ss_pred HHHHHhcCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHH
Q 016845 130 LNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVD 209 (381)
Q Consensus 130 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 209 (381)
+..+...+++|+.|+++++ .++... ...+..+++|+.|+|++|.+++... ...+++|+.|+++++. +....
T Consensus 26 l~~l~~~~~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~--- 96 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGN-PLSQIS-AADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY-VQELL--- 96 (487)
T ss_dssp HHTTSTTGGGCCEEECCSS-CCCCCC-GGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSE-EEEEE---
T ss_pred HHHhcccCCCccEEEeeCC-cCCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCc-CCCCC---
Confidence 3333445569999999986 343321 1233578999999999998764322 4568999999999875 43211
Q ss_pred HHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHh
Q 016845 210 LAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGN 289 (381)
Q Consensus 210 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~ 289 (381)
. .++|+.|+++++ .+.... ...+++|+.|++++|.++..... .+..+++|+.|+++.+.++......+..
T Consensus 97 ---~-~~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 166 (487)
T 3oja_A 97 ---V-GPSIETLHAANN-NISRVS----CSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (487)
T ss_dssp ---E-CTTCCEEECCSS-CCCCEE----ECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred ---C-CCCcCEEECcCC-cCCCCC----ccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhh
Confidence 1 279999999986 333322 13578999999999987653221 2345799999999988887644444444
Q ss_pred cCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcC
Q 016845 290 QCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFC 369 (381)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~ 369 (381)
.+++|++|+++++. ++.. .. ...+++|+.|+++++. ++.-.- . +..+++|+.|+++++ .++. +......+
T Consensus 167 ~l~~L~~L~Ls~N~-l~~~--~~-~~~l~~L~~L~Ls~N~-l~~~~~-~-~~~l~~L~~L~Ls~N-~l~~--lp~~l~~l 236 (487)
T 3oja_A 167 SSDTLEHLNLQYNF-IYDV--KG-QVVFAKLKTLDLSSNK-LAFMGP-E-FQSAAGVTWISLRNN-KLVL--IEKALRFS 236 (487)
T ss_dssp GTTTCCEEECTTSC-CCEE--EC-CCCCTTCCEEECCSSC-CCEECG-G-GGGGTTCSEEECTTS-CCCE--ECTTCCCC
T ss_pred hCCcccEEecCCCc-cccc--cc-cccCCCCCEEECCCCC-CCCCCH-h-HcCCCCccEEEecCC-cCcc--cchhhccC
Confidence 67999999999865 4322 11 1248999999999974 553211 1 456899999999996 4543 33335578
Q ss_pred CccceeEcccC
Q 016845 370 RYASFCRLNLN 380 (381)
Q Consensus 370 ~~L~~l~l~~~ 380 (381)
++|+.|++..|
T Consensus 237 ~~L~~L~l~~N 247 (487)
T 3oja_A 237 QNLEHFDLRGN 247 (487)
T ss_dssp TTCCEEECTTC
T ss_pred CCCCEEEcCCC
Confidence 99999998765
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.02 E-value=7.8e-12 Score=119.67 Aligned_cols=210 Identities=19% Similarity=0.081 Sum_probs=102.6
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcC
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 241 (381)
.+++|+.|+++++.+.+.........+++|+.|+++++. +....... ... .++|+.|++.++..............+
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~-~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNS-FAL-VPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTT-TTT-CTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhh-hhc-CcccccchhccccccccccCCcccccC
Confidence 345555555555544321111112235555555555543 11100000 011 256666666554211000011112356
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHH-------HHHhcCCCCCeEeccCCCCCCHHHHHHHH
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALV-------AVGNQCLSLELLALYSFQQFTDKGLHAVG 314 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~-------~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (381)
++|+.|++++|.++.... ..+..+++|+.|+++.+.+...... .....+++|+.|+++++. ++.-. ....
T Consensus 480 ~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~-~~~~ 556 (680)
T 1ziw_A 480 RNLTILDLSNNNIANIND-DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIP-VEVF 556 (680)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCC-TTTT
T ss_pred CCCCEEECCCCCCCcCCh-hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCC-HHHc
Confidence 777777777766553221 1234567788888876665431100 002246778888887653 33110 1122
Q ss_pred hcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 315 KGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 315 ~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
..+++|+.|+++++ .++.-. ......+++|+.|+++++ .++......+...+++|+.+++..|
T Consensus 557 ~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 557 KDLFELKIIDLGLN-NLNTLP-ASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred ccccCcceeECCCC-CCCcCC-HhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCC
Confidence 45778888888775 344211 112345788888888885 4544333333335678888777644
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.02 E-value=1.4e-10 Score=108.47 Aligned_cols=116 Identities=17% Similarity=0.025 Sum_probs=51.4
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 016845 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKK 319 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 319 (381)
.+++|+.|++++|.+..- ....++|+.|.++.+.+.. +...+++|+.|+++++. ++. +...+++
T Consensus 179 ~~~~L~~L~Ls~N~l~~l-----~~~~~~L~~L~L~~N~l~~-----l~~~~~~L~~L~Ls~N~-L~~-----lp~~l~~ 242 (622)
T 3g06_A 179 LPSGLQELSVSDNQLASL-----PTLPSELYKLWAYNNRLTS-----LPALPSGLKELIVSGNR-LTS-----LPVLPSE 242 (622)
T ss_dssp CCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSS-----CCCCCTTCCEEECCSSC-CSC-----CCCCCTT
T ss_pred cCCCCcEEECCCCCCCCC-----CCccchhhEEECcCCcccc-----cCCCCCCCCEEEccCCc-cCc-----CCCCCCc
Confidence 345566666665554421 1123455555554444331 11123455666665532 221 1133455
Q ss_pred CCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 320 LKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 320 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
|+.|+++++ .++. +. ..+++|+.|++++| .++. +..-...+++|+.|+|..|
T Consensus 243 L~~L~Ls~N-~L~~--lp---~~~~~L~~L~Ls~N-~L~~--lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 243 LKELMVSGN-RLTS--LP---MLPSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCEEECCSS-CCSC--CC---CCCTTCCEEECCSS-CCCS--CCGGGGGSCTTCEEECCSC
T ss_pred CcEEECCCC-CCCc--CC---cccccCcEEeCCCC-CCCc--CCHHHhhccccCEEEecCC
Confidence 666666554 2321 11 13455666666554 2331 2222334566666655543
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.02 E-value=6e-10 Score=94.74 Aligned_cols=168 Identities=25% Similarity=0.194 Sum_probs=117.9
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcC
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 241 (381)
.+++|+.|+++++.+... .. ...+++|+.|+++++. +..... ...+ ++|+.|++.++ .+.+. .. ...+
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~---l~~l-~~L~~L~l~~n-~l~~~--~~-l~~l 111 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-LTDIKP---LANL-KNLGWLFLDEN-KVKDL--SS-LKDL 111 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSSC-CCCCGG---GTTC-TTCCEEECCSS-CCCCG--GG-GTTC
T ss_pred hcCcccEEEccCCCcccC--hh-HhcCCCCCEEEccCCc-cCCCcc---cccC-CCCCEEECCCC-cCCCC--hh-hccC
Confidence 467899999999887643 22 3458999999999876 433221 2333 79999999986 34332 22 3578
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (381)
++|++|++++|.+... ..+..+++|+.|+++.+.+... .. ...+++|++|+++++. +++... ...+++|+
T Consensus 112 ~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~ 181 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQ 181 (291)
T ss_dssp TTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSC-CCCCGG---GTTCTTCC
T ss_pred CCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcCCcc--hh-hccCCCCCEEEccCCc-cccchh---hcCCCccC
Confidence 9999999999887653 2245689999999988777653 22 3367899999998864 443221 45689999
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCH 355 (381)
Q Consensus 322 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 355 (381)
+|+++++. +++- .. +..+++|+.|++++++
T Consensus 182 ~L~L~~N~-i~~l--~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 182 NLYLSKNH-ISDL--RA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp EEECCSSC-CCBC--GG-GTTCTTCSEEEEEEEE
T ss_pred EEECCCCc-CCCC--hh-hccCCCCCEEECcCCc
Confidence 99999874 5542 22 4568999999999853
No 85
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.01 E-value=6.6e-12 Score=118.82 Aligned_cols=103 Identities=10% Similarity=-0.035 Sum_probs=51.8
Q ss_pred CCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHh-------cCCCCCEEeccCCCCCCHHHHHHH
Q 016845 267 PLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGK-------GCKKLKNLTLSDCYFLSDMGLEAI 339 (381)
Q Consensus 267 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-------~~~~L~~L~l~~~~~i~~~~l~~l 339 (381)
++|+.|+++.+.+..- ...+...+++|++|+++++. ++.-. ..... .+++|+.|+++++. ++. +...
T Consensus 433 ~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~ 506 (636)
T 4eco_A 433 INVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNM-LTEIP-KNSLKDENENFKNTYLLTSIDLRFNK-LTK--LSDD 506 (636)
T ss_dssp CCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSC-CSBCC-SSSSEETTEECTTGGGCCEEECCSSC-CCB--CCGG
T ss_pred CCCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCC-CCCcC-HHHhccccccccccCCccEEECcCCc-CCc--cChh
Confidence 3555555554444321 11122245666666666543 22100 00011 12277777777753 442 2222
Q ss_pred Hh--cCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcc
Q 016845 340 AT--GCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLN 378 (381)
Q Consensus 340 ~~--~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~ 378 (381)
.. .+++|+.|+++++ .++. +..-...+++|+.|++.
T Consensus 507 ~~~~~l~~L~~L~Ls~N-~l~~--ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYN-SFSK--FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp GSTTTCTTCCEEECCSS-CCSS--CCCGGGGCSSCCEEECC
T ss_pred hhhccCCCcCEEECCCC-CCCC--cChhhhcCCCCCEEECC
Confidence 22 5788888888875 3433 33333467888888874
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.01 E-value=1.5e-10 Score=108.22 Aligned_cols=37 Identities=19% Similarity=-0.001 Sum_probs=16.3
Q ss_pred CCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCC
Q 016845 163 CIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (381)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 199 (381)
+++|++|+++++.++.-........+++|++|+++++
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence 4555555555554433111111223455555555543
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.97 E-value=1e-09 Score=102.48 Aligned_cols=166 Identities=23% Similarity=0.166 Sum_probs=88.0
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
+++|+.|++.++. +... .. +..+++|+.|+|++|.+.+... ...+++|+.|+|+++. +.... . ... .+
T Consensus 42 L~~L~~L~l~~n~-i~~l--~~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~--~-l~~-l~ 109 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENK-IKDLS--S-LKD-LK 109 (605)
T ss_dssp HTTCCCCBCTTCC-CCCC--TT-GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSC-CCCCT--T-STT-CT
T ss_pred CCCCCEEECcCCC-CCCC--hH-HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCC-CCCCh--h-hcc-CC
Confidence 4677777777653 2221 11 3467778888887777654322 3457777777777665 33211 1 112 25
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCe
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (381)
+|+.|+++++. +.+. .. ...+++|+.|++++|.+... ..+..+++|+.|+++.+.+..... ...+++|+.
T Consensus 110 ~L~~L~Ls~N~-l~~l--~~-l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~ 179 (605)
T 1m9s_A 110 KLKSLSLEHNG-ISDI--NG-LVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQN 179 (605)
T ss_dssp TCCEEECTTSC-CCCC--GG-GGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred CCCEEEecCCC-CCCC--cc-ccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCE
Confidence 67777776642 2221 11 23566677777766665542 223456666666666555543211 234566666
Q ss_pred EeccCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 016845 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDC 328 (381)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (381)
|+|+++. +++. .. ...+++|+.|++++|
T Consensus 180 L~Ls~N~-i~~l--~~-l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 180 LYLSKNH-ISDL--RA-LAGLKNLDVLELFSQ 207 (605)
T ss_dssp EECCSSC-CCBC--GG-GTTCTTCSEEECCSE
T ss_pred EECcCCC-CCCC--hH-HccCCCCCEEEccCC
Confidence 6666542 3321 11 233566666666654
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.96 E-value=9.7e-10 Score=102.82 Aligned_cols=193 Identities=16% Similarity=0.027 Sum_probs=132.0
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|+++++. ++. +.. .+++|++|++++|.++.-. ..+++|+.|+++++. ++.. ... .
T Consensus 79 ~l~~L~~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~N~l~~l~-----~~l~~L~~L~L~~N~-l~~l-----p~~-l 140 (622)
T 3g06_A 79 LPPELRTLEVSGNQ-LTS--LPV---LPPGLLELSIFSNPLTHLP-----ALPSGLCKLWIFGNQ-LTSL-----PVL-P 140 (622)
T ss_dssp CCTTCCEEEECSCC-CSC--CCC---CCTTCCEEEECSCCCCCCC-----CCCTTCCEEECCSSC-CSCC-----CCC-C
T ss_pred cCCCCCEEEcCCCc-CCc--CCC---CCCCCCEEECcCCcCCCCC-----CCCCCcCEEECCCCC-CCcC-----CCC-C
Confidence 46889999998863 332 111 5789999999998866421 146789999998765 3321 111 2
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|+++++ .++. +...+++|+.|++++|.+..-. ..+++|+.|+++.+.+.. +....++|+
T Consensus 141 ~~L~~L~Ls~N-~l~~-----l~~~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~Ls~N~l~~-----l~~~~~~L~ 204 (622)
T 3g06_A 141 PGLQELSVSDN-QLAS-----LPALPSELCKLWAYNNQLTSLP-----MLPSGLQELSVSDNQLAS-----LPTLPSELY 204 (622)
T ss_dssp TTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSC-----CCCCCTTCC
T ss_pred CCCCEEECcCC-cCCC-----cCCccCCCCEEECCCCCCCCCc-----ccCCCCcEEECCCCCCCC-----CCCccchhh
Confidence 78999999886 3332 1124678999999988776522 456889999998877763 222357899
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCcccee
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFC 375 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l 375 (381)
.|.++++. ++. +...+++|+.|+++++ .++. +...+++|+.|+++++ .++. +.. .+++|+.|
T Consensus 205 ~L~L~~N~-l~~-----l~~~~~~L~~L~Ls~N-~L~~-----lp~~l~~L~~L~Ls~N-~L~~--lp~---~~~~L~~L 266 (622)
T 3g06_A 205 KLWAYNNR-LTS-----LPALPSGLKELIVSGN-RLTS-----LPVLPSELKELMVSGN-RLTS--LPM---LPSGLLSL 266 (622)
T ss_dssp EEECCSSC-CSS-----CCCCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSC--CCC---CCTTCCEE
T ss_pred EEECcCCc-ccc-----cCCCCCCCCEEEccCC-ccCc-----CCCCCCcCcEEECCCC-CCCc--CCc---ccccCcEE
Confidence 99998864 331 2234688999999987 3553 1155789999999996 4543 222 67899999
Q ss_pred EcccC
Q 016845 376 RLNLN 380 (381)
Q Consensus 376 ~l~~~ 380 (381)
++..|
T Consensus 267 ~Ls~N 271 (622)
T 3g06_A 267 SVYRN 271 (622)
T ss_dssp ECCSS
T ss_pred eCCCC
Confidence 98765
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.95 E-value=5.1e-12 Score=106.88 Aligned_cols=203 Identities=18% Similarity=0.116 Sum_probs=114.2
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcC
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 217 (381)
++|+.|+++++ .++.... ..+..+++|++|+++++.++..... ....+++|++|+++++. +....... ... .++
T Consensus 28 ~~l~~L~ls~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~-l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNP-IQSLALGA-FSG-LSS 101 (276)
T ss_dssp TTCCEEECTTC-CCCEECT-TTTTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCC-CCEECTTT-TTT-CTT
T ss_pred CCccEEECCCC-cccccCH-hHhccccCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCc-cCccChhh-hcC-Ccc
Confidence 46888888765 3332111 1233678888888888876542221 22357788888888765 33221111 122 268
Q ss_pred ccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCH---HHHHHHHhcCCCC
Q 016845 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTD---EALVAVGNQCLSL 294 (381)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~l~~l~~~~~~L 294 (381)
|+.|++.++. +....... ...+++|++|++++|.+....+...+..+++|+.|+++.+.+.. ..+..+. ..+.+
T Consensus 102 L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~l 178 (276)
T 2z62_A 102 LQKLVAVETN-LASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLL 178 (276)
T ss_dssp CCEEECTTSC-CCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-TCTTC
T ss_pred ccEEECCCCC-ccccCchh-cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh-hcccc
Confidence 8888887753 22211101 24678888888888776543333345567888888888776653 2233322 33334
Q ss_pred C-eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 016845 295 E-LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGC 354 (381)
Q Consensus 295 ~-~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c 354 (381)
. +|+++++. ++..... .. ...+|++|+++++. ++... ...+..+++|+.|+++++
T Consensus 179 ~l~L~ls~n~-l~~~~~~-~~-~~~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 179 NLSLDLSLNP-MNFIQPG-AF-KEIRLKELALDTNQ-LKSVP-DGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEECCSSC-CCEECTT-SS-CSCCEEEEECCSSC-CSCCC-TTTTTTCCSCCEEECCSS
T ss_pred ceeeecCCCc-ccccCcc-cc-CCCcccEEECCCCc-eeecC-HhHhcccccccEEEccCC
Confidence 3 77777643 3311110 11 13478888888863 44321 123355788888888863
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.94 E-value=1e-09 Score=102.52 Aligned_cols=167 Identities=26% Similarity=0.199 Sum_probs=87.7
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcC
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 241 (381)
.+++|+.|+++++.+... .. ...+++|+.|+|+++. +..... ...+ ++|+.|++.++ .+... .. ...+
T Consensus 41 ~L~~L~~L~l~~n~i~~l--~~-l~~l~~L~~L~Ls~N~-l~~~~~---l~~l-~~L~~L~Ls~N-~l~~l--~~-l~~l 108 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-LTDIKP---LTNL-KNLGWLFLDEN-KIKDL--SS-LKDL 108 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC--TT-GGGCTTCCEEECTTSC-CCCCGG---GGGC-TTCCEEECCSS-CCCCC--TT-STTC
T ss_pred cCCCCCEEECcCCCCCCC--hH-HccCCCCCEEEeeCCC-CCCChh---hccC-CCCCEEECcCC-CCCCC--hh-hccC
Confidence 456666777766665432 12 2346677777776654 222111 2222 56777777664 22221 11 2356
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (381)
++|+.|++++|.+.... -+..+++|+.|+++.+.+... .. ...+++|+.|+|+++. +++... ...+++|+
T Consensus 109 ~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~ 178 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQ 178 (605)
T ss_dssp TTCCEEECTTSCCCCCG---GGGGCTTCSEEECCSSCCCCC--GG-GGSCTTCSEEECCSSC-CCCCGG---GTTCTTCC
T ss_pred CCCCEEEecCCCCCCCc---cccCCCccCEEECCCCccCCc--hh-hcccCCCCEEECcCCc-CCCchh---hccCCCCC
Confidence 66777777666655421 134466677777766555542 12 2256667777776643 322111 33466777
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 016845 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGC 354 (381)
Q Consensus 322 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c 354 (381)
.|++++|. +++- .. +..+++|+.|+|++|
T Consensus 179 ~L~Ls~N~-i~~l--~~-l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 179 NLYLSKNH-ISDL--RA-LAGLKNLDVLELFSQ 207 (605)
T ss_dssp EEECCSSC-CCBC--GG-GTTCTTCSEEECCSE
T ss_pred EEECcCCC-CCCC--hH-HccCCCCCEEEccCC
Confidence 77776653 4431 12 344667777777664
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.93 E-value=3.7e-11 Score=114.98 Aligned_cols=211 Identities=16% Similarity=0.091 Sum_probs=130.6
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
.+++|+.|+++++. ++.........++++|++|++++|.+....... ...+++|+.|++.++..-...........+
T Consensus 403 ~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l- 479 (680)
T 1ziw_A 403 WLGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVPSLQRLMLRRVALKNVDSSPSPFQPL- 479 (680)
T ss_dssp TCTTCCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCSEEECCTTT-TTTCTTCCEEECTTSCCBCTTCSSCTTTTC-
T ss_pred CCCCCCEEeCCCCc-CccccCcccccCcccccEEecCCCCcceeChhh-hhcCcccccchhccccccccccCCcccccC-
Confidence 46888999988753 221101122347899999999999865422222 235899999999876521111111111223
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHH-------HHHhcCCCCcEEEeecccCCHHHHHHHH
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVH-------AVAQGCPLLRVLKLQCINVTDEALVAVG 288 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~l~~l~ 288 (381)
++|+.|+++++ .++..... ....+++|+.|++++|.+...... ..+..+++|+.|+++.+.+..-.. ...
T Consensus 480 ~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~-~~~ 556 (680)
T 1ziw_A 480 RNLTILDLSNN-NIANINDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV-EVF 556 (680)
T ss_dssp TTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT-TTT
T ss_pred CCCCEEECCCC-CCCcCChh-hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH-HHc
Confidence 78999999985 33322211 224789999999999877542111 124568899999998877763111 112
Q ss_pred hcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 289 NQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCH 355 (381)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 355 (381)
..+++|+.|+++++. ++.-. ......+++|+.|+++++ .++......+...+++|+.|++++++
T Consensus 557 ~~l~~L~~L~Ls~N~-l~~l~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 557 KDLFELKIIDLGLNN-LNTLP-ASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred ccccCcceeECCCCC-CCcCC-HhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 367899999998753 43211 112345799999999997 35433222232247899999999743
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.93 E-value=2.3e-11 Score=102.82 Aligned_cols=203 Identities=19% Similarity=0.087 Sum_probs=128.8
Q ss_pred CCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCC
Q 016845 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 243 (381)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 243 (381)
++|++|+++++.++...... ...+++|++|+++++. +....... ... .++|+.|+++++ .+.......+ ..+++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~-~~~-l~~L~~L~L~~n-~l~~~~~~~~-~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCE-IQTIEDGA-YQS-LSHLSTLILTGN-PIQSLALGAF-SGLSS 101 (276)
T ss_dssp TTCCEEECTTCCCCEECTTT-TTTCTTCSEEECTTCC-CCEECTTT-TTT-CTTCCEEECTTC-CCCEECTTTT-TTCTT
T ss_pred CCccEEECCCCcccccCHhH-hccccCCcEEECCCCc-CCccCHHH-ccC-CcCCCEEECCCC-ccCccChhhh-cCCcc
Confidence 57999999999876543222 3458999999999875 43221111 122 379999999985 3333222222 47899
Q ss_pred CCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCH---HHHHHHHhcCCCC
Q 016845 244 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTD---KGLHAVGKGCKKL 320 (381)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~~L 320 (381)
|++|++.++.+...... .+..+++|+.|+++.+.+....+......+++|++|+++++. ++. ..+..+.. ++.|
T Consensus 102 L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~-L~~l 178 (276)
T 2z62_A 102 LQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ-MPLL 178 (276)
T ss_dssp CCEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHT-CTTC
T ss_pred ccEEECCCCCccccCch-hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhh-cccc
Confidence 99999999876542211 145689999999988777542222223467999999999864 432 23333322 4444
Q ss_pred C-EEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 321 K-NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 321 ~-~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
. +|+++++. ++..... .....+|+.|+++++. ++... ..+...+++|+.|++..|
T Consensus 179 ~l~L~ls~n~-l~~~~~~--~~~~~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 179 NLSLDLSLNP-MNFIQPG--AFKEIRLKELALDTNQ-LKSVP-DGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEECCSSC-CCEECTT--SSCSCCEEEEECCSSC-CSCCC-TTTTTTCCSCCEEECCSS
T ss_pred ceeeecCCCc-ccccCcc--ccCCCcccEEECCCCc-eeecC-HhHhcccccccEEEccCC
Confidence 4 89998863 4421111 1124589999999964 54322 233457899999998765
No 93
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.92 E-value=9.7e-12 Score=121.62 Aligned_cols=61 Identities=20% Similarity=0.104 Sum_probs=32.5
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 316 GCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 316 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
.+++|+.|+++++. ++...- ..+.++++|+.|+++++. ++... ......+++|+.|+++.+
T Consensus 288 ~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 288 TLKDLKVLNLAYNK-INKIAD-EAFYGLDNLQVLNLSYNL-LGELY-SSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp SCCCCCEEEEESCC-CCEECT-TTTTTCSSCCEEEEESCC-CSCCC-SCSCSSCTTCCEEECCSC
T ss_pred cCCCCCEEECCCCc-CCCCCh-HHhcCCCCCCEEECCCCC-CCccC-HHHhcCCCCCCEEECCCC
Confidence 46677777777653 332111 122456777777777753 32211 112235677777777654
No 94
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=6.9e-08 Score=75.88 Aligned_cols=125 Identities=17% Similarity=0.125 Sum_probs=84.1
Q ss_pred HHHHHhcCCCCCEEEcccC-CCChhHHHHHHh---cCCCCcEEEeecccCCHHHHHHHH---hcCCCCCeEeccCCCCCC
Q 016845 234 LEAVGSHCKSLETLSLDSE-FIHNKGVHAVAQ---GCPLLRVLKLQCINVTDEALVAVG---NQCLSLELLALYSFQQFT 306 (381)
Q Consensus 234 ~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~ 306 (381)
+.......++|++|++++| .+++++...+.. ..++|+.|+++.+.+.+.+...+. ...++|++|+++++ .++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCC
Confidence 3444456777788888777 777766555443 356788888877777776554443 24577888888874 478
Q ss_pred HHHHHHHHh---cCCCCCEEec--cCCCCCCHHHHHHHH---hcCCCCCEEeccCCCCCChHH
Q 016845 307 DKGLHAVGK---GCKKLKNLTL--SDCYFLSDMGLEAIA---TGCKELTHLEINGCHNIGTMG 361 (381)
Q Consensus 307 ~~~~~~l~~---~~~~L~~L~l--~~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~~~~~~ 361 (381)
+.+...+.. ..++|++|++ ++ +.+++++...+. ...++|++|++++| .+++.+
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 877766654 3567889998 55 458887755443 45688999999885 455544
No 95
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.91 E-value=8.1e-10 Score=83.89 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=36.3
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHH--HHHHhc
Q 016845 291 CLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGL--ESIGKF 368 (381)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~--~~l~~~ 368 (381)
+++|++|+++++. ++.. +......+++|++|+++++. +++......+..+++|+.|++++| .++.... ......
T Consensus 63 l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 63 LNKLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKL 138 (149)
T ss_dssp CTTCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHH
T ss_pred CCCCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHH
Confidence 4455555555432 2211 12222335555666655543 443222222344566666666654 2222111 123345
Q ss_pred CCccceeEc
Q 016845 369 CRYASFCRL 377 (381)
Q Consensus 369 ~~~L~~l~l 377 (381)
+|+|++|++
T Consensus 139 l~~L~~L~l 147 (149)
T 2je0_A 139 LPQLTYLDG 147 (149)
T ss_dssp CTTCCEETT
T ss_pred CCCcccccC
Confidence 566666554
No 96
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.90 E-value=9.4e-10 Score=83.52 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=5.8
Q ss_pred CCCEEEeeccccC
Q 016845 165 HLKSLDLQGCYVG 177 (381)
Q Consensus 165 ~L~~L~l~~~~~~ 177 (381)
+|+.|+++++.++
T Consensus 18 ~l~~L~l~~n~l~ 30 (149)
T 2je0_A 18 DVKELVLDNSRSN 30 (149)
T ss_dssp GCSEEECTTCBCB
T ss_pred cCeEEEccCCcCC
Confidence 4444444444433
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.90 E-value=1.8e-10 Score=97.06 Aligned_cols=179 Identities=15% Similarity=0.061 Sum_probs=114.1
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcC
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 241 (381)
.+++|+.|++.++.+... .. ...+++|+.|+++++. +... . .... .++|+.|++.++ .+..... .....+
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~-l~~l~~L~~L~l~~n~-l~~~--~-~l~~-l~~L~~L~L~~n-~l~~~~~-~~~~~l 108 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QG-IQYLPNVRYLALGGNK-LHDI--S-ALKE-LTNLTYLILTGN-QLQSLPN-GVFDKL 108 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TT-GGGCTTCCEEECTTSC-CCCC--G-GGTT-CTTCCEEECTTS-CCCCCCT-TTTTTC
T ss_pred cccceeeeeeCCCCcccc--cc-cccCCCCcEEECCCCC-CCCc--h-hhcC-CCCCCEEECCCC-ccCccCh-hHhcCC
Confidence 468899999998876642 22 2458899999998876 4332 1 1222 378999999885 3332211 112467
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (381)
++|++|++++|.+.... ...+..+++|+.|+++.+.+..... .....+++|++|+++++. ++... ......+++|+
T Consensus 109 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~ 184 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLP-DGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQ-LQSLP-EGVFDKLTQLK 184 (272)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCC
T ss_pred cCCCEEECCCCcCCccC-HHHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCC-cCccC-HHHhcCCccCC
Confidence 89999999988765422 1223557889999998777653221 112357889999998864 43211 12234578999
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCC
Q 016845 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHN 356 (381)
Q Consensus 322 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 356 (381)
+|+++++. ++... ...+..+++|+.|++++++-
T Consensus 185 ~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 185 DLRLYQNQ-LKSVP-DGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EEECCSSC-CSCCC-TTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCc-CCccC-HHHHhCCcCCCEEEccCCCc
Confidence 99998864 44311 12235688999999988643
No 98
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.90 E-value=9.3e-12 Score=121.76 Aligned_cols=125 Identities=18% Similarity=0.078 Sum_probs=56.6
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (381)
++|+.|+++++.+.... ...+..+++|+.|+++.+.+.......+ ..+++|++|+++++. ++... ......+++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNL-LGELY-SSNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTCCCCEEC-SCCSSSCCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCC-CSCCC-SCSCSSCTTCC
T ss_pred CCccEEECCCCcccccC-hhhhhcCCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCC-CCccC-HHHhcCCCCCC
Confidence 45666666555443221 1112345666666666555433211111 245666666666543 21110 01122356666
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEccc
Q 016845 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNL 379 (381)
Q Consensus 322 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~ 379 (381)
.|+++++. ++...- ..+..+++|+.|+++++. ++. ...+|+|+.|.+..
T Consensus 342 ~L~L~~N~-i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~------i~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 342 YIDLQKNH-IAIIQD-QTFKFLEKLQTLDLRDNA-LTT------IHFIPSIPDIFLSG 390 (844)
T ss_dssp EEECCSCC-CCCCCS-SCSCSCCCCCEEEEETCC-SCC------CSSCCSCSEEEEES
T ss_pred EEECCCCC-CCccCh-hhhcCCCCCCEEECCCCC-CCc------ccCCCCcchhccCC
Confidence 66666642 322110 012346667777776642 322 11255666665543
No 99
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.88 E-value=6.4e-11 Score=99.69 Aligned_cols=179 Identities=20% Similarity=0.117 Sum_probs=87.9
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcC
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 217 (381)
+++++|++.++. ++... ...+..+++|++|+++++.++.-. ..+...+++|++|+++++. +..... ..... .++
T Consensus 37 ~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~-l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLP-SKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNK-LQALPI-GVFDQ-LVN 110 (270)
T ss_dssp TTCSEEECCSSC-CSCCC-TTSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSC-CCCCCT-TTTTT-CSS
T ss_pred CCCCEEECcCCC-CCeeC-HHHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCc-CCcCCH-hHccc-ccC
Confidence 467888887652 32111 112235678888888877765321 1222346778888877654 222110 11111 256
Q ss_pred ccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeE
Q 016845 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELL 297 (381)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L 297 (381)
|+.|++.++ .+...... ....+++|++|++++|.+..... ..+..+++|+.|+++.+.+.......+ ..+++|++|
T Consensus 111 L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L 186 (270)
T 2o6q_A 111 LAELRLDRN-QLKSLPPR-VFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEGAF-DKLTELKTL 186 (270)
T ss_dssp CCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEE
T ss_pred CCEEECCCC-ccCeeCHH-HhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeChhHh-ccCCCcCEE
Confidence 777777664 22221111 11356677777777665543221 112345667777776555433111111 235666666
Q ss_pred eccCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 016845 298 ALYSFQQFTDKGLHAVGKGCKKLKNLTLSDC 328 (381)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (381)
+++++. ++.... .....+++|+.|+++++
T Consensus 187 ~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 187 KLDNNQ-LKRVPE-GAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp ECCSSC-CSCCCT-TTTTTCTTCCEEECCSS
T ss_pred ECCCCc-CCcCCH-HHhccccCCCEEEecCC
Confidence 666542 221110 11223566666666654
No 100
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.88 E-value=9.5e-08 Score=75.08 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=95.5
Q ss_pred hHHHHHHhcCCCCcEEEeecc-cCCHHHHHHHH---hcCCCCCeEeccCCCCCCHHHHHHHHh---cCCCCCEEeccCCC
Q 016845 257 KGVHAVAQGCPLLRVLKLQCI-NVTDEALVAVG---NQCLSLELLALYSFQQFTDKGLHAVGK---GCKKLKNLTLSDCY 329 (381)
Q Consensus 257 ~~~~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~ 329 (381)
+.+.......++|++|+++.+ .+.+.+...+. ...++|++|+++++ .+++++...+.. ..++|++|++++|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N- 103 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN- 103 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-
Confidence 345666777899999999988 99987765554 34689999999996 488888766543 4688999999996
Q ss_pred CCCHHHHHHHHh---cCCCCCEEec--cCCCCCChHHHHH---HHhcCCccceeEcccCC
Q 016845 330 FLSDMGLEAIAT---GCKELTHLEI--NGCHNIGTMGLES---IGKFCRYASFCRLNLNK 381 (381)
Q Consensus 330 ~i~~~~l~~l~~---~~~~L~~L~l--~~c~~~~~~~~~~---l~~~~~~L~~l~l~~~~ 381 (381)
.+++.+...+.. ..++|+.|++ ++ ..+++.+... ..+.+++|++|++..+.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 599998877765 4578999999 65 5788887544 44567999999998763
No 101
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.83 E-value=1e-10 Score=98.41 Aligned_cols=180 Identities=19% Similarity=0.128 Sum_probs=102.0
Q ss_pred CCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCC
Q 016845 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 243 (381)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 243 (381)
+++++|+++++.++..... ....+++|++|+++++. +.... ...... .++|+.|++.++ .+..... .....+++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~i~-~~~~~~-l~~L~~L~l~~n-~l~~~~~-~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSK-AFHRLTKLRLLYLNDNK-LQTLP-AGIFKE-LKNLETLWVTDN-KLQALPI-GVFDQLVN 110 (270)
T ss_dssp TTCSEEECCSSCCSCCCTT-SSSSCTTCCEEECCSSC-CSCCC-TTTTSS-CTTCCEEECCSS-CCCCCCT-TTTTTCSS
T ss_pred CCCCEEECcCCCCCeeCHH-HhcCCCCCCEEECCCCc-cCeeC-hhhhcC-CCCCCEEECCCC-cCCcCCH-hHcccccC
Confidence 4688888888876543211 22356788888887764 32111 011112 267888888774 2322211 12246788
Q ss_pred CCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEE
Q 016845 244 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNL 323 (381)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 323 (381)
|++|+++++.+..... ..+..+++|+.|+++.+.+....... ...+++|++|+++++. ++.... .....+++|++|
T Consensus 111 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L 186 (270)
T 2o6q_A 111 LAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLPKGV-FDKLTSLKELRLYNNQ-LKRVPE-GAFDKLTELKTL 186 (270)
T ss_dssp CCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEE
T ss_pred CCEEECCCCccCeeCH-HHhCcCcCCCEEECCCCcCCccCHhH-ccCCcccceeEecCCc-CcEeCh-hHhccCCCcCEE
Confidence 8888888876654321 12345788888888776665321111 2256788888887753 322111 112347788888
Q ss_pred eccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 324 TLSDCYFLSDMGLEAIATGCKELTHLEINGCH 355 (381)
Q Consensus 324 ~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 355 (381)
+++++. ++.... ..+..+++|+.|++++++
T Consensus 187 ~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 187 KLDNNQ-LKRVPE-GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSC-CSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-CCcCCH-HHhccccCCCEEEecCCC
Confidence 888763 442111 123457888888887754
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.80 E-value=9.8e-10 Score=85.28 Aligned_cols=134 Identities=21% Similarity=0.195 Sum_probs=77.6
Q ss_pred CcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCC
Q 016845 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (381)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 294 (381)
+++|+.|++.++. +.+..+......+++|+.|++++|.+... ..+..+++|+.|+++.+.+... +......+++|
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTC
T ss_pred cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCC
Confidence 3678888887753 33112222234667788888887776553 3344567788888876666542 22233346778
Q ss_pred CeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHH--HHHHHhcCCCCCEEeccCCC
Q 016845 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMG--LEAIATGCKELTHLEINGCH 355 (381)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~--l~~l~~~~~~L~~L~l~~c~ 355 (381)
++|+++++. +++.........+++|++|+++++. ++... ....+..+++|+.|++.+|.
T Consensus 98 ~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 888887753 4332111223347777778777763 33221 12244567777777777764
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.79 E-value=1e-09 Score=85.24 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=17.1
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccC
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVG 177 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 177 (381)
++|+.|++.++ .+++..+......+++|+.|++++|.++
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~ 62 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLI 62 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCC
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCC
Confidence 45555555554 2221122222234455555555555444
No 104
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.77 E-value=6.7e-10 Score=94.36 Aligned_cols=176 Identities=19% Similarity=0.153 Sum_probs=83.8
Q ss_pred CCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCC
Q 016845 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 243 (381)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 243 (381)
++++.|+++++.++...... ...+++|+.|+++++. ++..... . ..++|+.|+++++ .+.. +......+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~---~-~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~ 101 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAE-LTKLQVD---G-TLPVLGTLDLSHN-QLQS--LPLLGQTLPA 101 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTSC-CCEEECC---S-CCTTCCEEECCSS-CCSS--CCCCTTTCTT
T ss_pred CCCCEEEcCCCcCCccCHHH-hhcCCCCCEEECCCCc-cCcccCC---C-CCCcCCEEECCCC-cCCc--CchhhccCCC
Confidence 45666666666654322222 2245666666666554 3221100 1 1256666666664 2221 1111235666
Q ss_pred CCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEE
Q 016845 244 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNL 323 (381)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 323 (381)
|+.|++++|.++.... ..+..+++|+.|+++.+.+..... .....+++|+.|+++++. ++.-. ......+++|+.|
T Consensus 102 L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~l~-~~~~~~l~~L~~L 177 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNN-LTELP-AGLLNGLENLDTL 177 (290)
T ss_dssp CCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSC-CSCCC-TTTTTTCTTCCEE
T ss_pred CCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCccCh-hhcccccCCCEEECCCCc-CCccC-HHHhcCcCCCCEE
Confidence 7777776665543211 123445667777776555542111 111245667777776643 32110 1122346677777
Q ss_pred eccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 324 TLSDCYFLSDMGLEAIATGCKELTHLEINGCH 355 (381)
Q Consensus 324 ~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 355 (381)
+++++. ++. +..-+...++|+.|++++.+
T Consensus 178 ~L~~N~-l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 178 LLQENS-LYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ECCSSC-CCC--CCTTTTTTCCCSEEECCSCC
T ss_pred ECCCCc-CCc--cChhhcccccCCeEEeCCCC
Confidence 776652 331 11111234567777777543
No 105
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.75 E-value=3.4e-10 Score=96.13 Aligned_cols=198 Identities=18% Similarity=0.130 Sum_probs=126.5
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcC
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 241 (381)
.++++++++++++.++.- +. ...++++.|+++++. +....... ... .++|+.|++.++ .++.... ...+
T Consensus 8 ~l~~l~~l~~~~~~l~~i--p~--~~~~~l~~L~L~~N~-l~~~~~~~-~~~-l~~L~~L~L~~n-~l~~~~~---~~~l 76 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTAL--PP--DLPKDTTILHLSENL-LYTFSLAT-LMP-YTRLTQLNLDRA-ELTKLQV---DGTL 76 (290)
T ss_dssp CSTTCCEEECTTSCCSSC--CS--CCCTTCCEEECTTSC-CSEEEGGG-GTT-CTTCCEEECTTS-CCCEEEC---CSCC
T ss_pred ccCCccEEECCCCCCCcC--CC--CCCCCCCEEEcCCCc-CCccCHHH-hhc-CCCCCEEECCCC-ccCcccC---CCCC
Confidence 467888888888776531 11 123689999999876 43321111 122 379999999985 3433221 1478
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (381)
++|++|++++|.+.. +...+..+++|+.|+++.+.+....... ...+++|++|+++++. ++... ......+++|+
T Consensus 77 ~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~ 151 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGA-LRGLGELQELYLKGNE-LKTLP-PGLLTPTPKLE 151 (290)
T ss_dssp TTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSST-TTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCC
T ss_pred CcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCHHH-HcCCCCCCEEECCCCC-CCccC-hhhcccccCCC
Confidence 999999999988763 2223456899999999988776422111 2357899999999864 33211 11234578999
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 322 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
.|+++++. ++.-. ...+..+++|+.|+++++ .++. +..-....++|+.+.+.-|
T Consensus 152 ~L~L~~N~-l~~l~-~~~~~~l~~L~~L~L~~N-~l~~--ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 152 KLSLANNN-LTELP-AGLLNGLENLDTLLLQEN-SLYT--IPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp EEECTTSC-CSCCC-TTTTTTCTTCCEEECCSS-CCCC--CCTTTTTTCCCSEEECCSC
T ss_pred EEECCCCc-CCccC-HHHhcCcCCCCEEECCCC-cCCc--cChhhcccccCCeEEeCCC
Confidence 99999863 54211 123356899999999985 4442 2222334578888887654
No 106
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.75 E-value=5.1e-11 Score=98.40 Aligned_cols=200 Identities=15% Similarity=0.053 Sum_probs=91.1
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccc-cChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
++|+.|++.++ .++... ...+..+++|++|+++++. ++.-.. .....+++|++|+++++..+...... .... .+
T Consensus 31 ~~l~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~-l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIP-SHAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPD-ALKE-LP 105 (239)
T ss_dssp TTCCEEEEESC-CCSEEC-TTTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTT-SEEC-CT
T ss_pred CcccEEEEeCC-cceEEC-HHHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHH-HhCC-CC
Confidence 47888888765 232211 1122357788888888775 543211 12235677888888763223321100 0111 25
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCC---EEEcccC-CCChhHHHHHHhcCCCCc-EEEeecccCCHHHHHHHHhcC
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLE---TLSLDSE-FIHNKGVHAVAQGCPLLR-VLKLQCINVTDEALVAVGNQC 291 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~l~~l~~~~ 291 (381)
+|+.|++.++. +.. +.. ...+++|+ .|++++| .+..... ..+..+++|+ .|+++.+.+..-....+ ..
T Consensus 106 ~L~~L~l~~n~-l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~~~~~--~~ 178 (239)
T 2xwt_C 106 LLKFLGIFNTG-LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQGYAF--NG 178 (239)
T ss_dssp TCCEEEEEEEC-CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEECTTTT--TT
T ss_pred CCCEEeCCCCC-Ccc--ccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccCHhhc--CC
Confidence 67777776642 221 111 23455555 6666665 4433211 1123456666 66665554432111111 11
Q ss_pred CCCCeEeccCCCCCCHHHHHHHHhcC-CCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 292 LSLELLALYSFQQFTDKGLHAVGKGC-KKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCH 355 (381)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 355 (381)
++|++|+++++..++.... .....+ ++|+.|+++++. ++.-.- ..+++|+.|.+.+++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~-l~~l~~----~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTS-VTALPS----KGLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCC-CCCCCC----TTCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCc-cccCCh----hHhccCceeeccCcc
Confidence 4566666655432321111 111234 556666666532 321100 025556666655543
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.70 E-value=1.4e-08 Score=84.84 Aligned_cols=142 Identities=22% Similarity=0.187 Sum_probs=67.0
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
+++|+.|++.++ .++.. . ....+++|++|+++++.+++... ...+++|+.|+++++. +... ..+. .+
T Consensus 40 l~~L~~L~l~~n-~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~-l~~l--~~~~---~~ 106 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSL--A-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR-LKNL--NGIP---SA 106 (263)
T ss_dssp HTTCSEEECTTS-CCCCC--T-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC-CSCC--TTCC---CS
T ss_pred cCcCcEEECcCC-Ccccc--h-HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCc-cCCc--Cccc---cC
Confidence 466667776665 23221 1 13356667777777666554222 3346666666666654 2221 0010 14
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCe
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (381)
+|+.|+++++ .+++. .. ...+++|+.|++++|.+++.. .+..+++|+.|+++.+.+.+. .. ...+++|+.
T Consensus 107 ~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~ 176 (263)
T 1xeu_A 107 CLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT--GG-LTRLKKVNW 176 (263)
T ss_dssp SCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC--TT-STTCCCCCE
T ss_pred cccEEEccCC-ccCCC--hh-hcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch--HH-hccCCCCCE
Confidence 5666666553 22221 11 234555666666555544321 133355555555554444432 11 123445555
Q ss_pred EeccC
Q 016845 297 LALYS 301 (381)
Q Consensus 297 L~l~~ 301 (381)
|++++
T Consensus 177 L~l~~ 181 (263)
T 1xeu_A 177 IDLTG 181 (263)
T ss_dssp EEEEE
T ss_pred EeCCC
Confidence 55544
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.68 E-value=7.8e-11 Score=97.30 Aligned_cols=199 Identities=12% Similarity=-0.017 Sum_probs=115.0
Q ss_pred CCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCC
Q 016845 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 243 (381)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 243 (381)
++|++|+++++.++.-... ....+++|+.|+++++..+...... .... .++|+.|++.+|..+....... ...+++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~-l~~L~~L~l~~~n~l~~i~~~~-f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESH-SFYN-LSKVTHIEIRNTRNLTYIDPDA-LKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTT-TEES-CTTCCEEEEEEETTCCEECTTS-EECCTT
T ss_pred CcccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHh-HcCC-CcCCcEEECCCCCCeeEcCHHH-hCCCCC
Confidence 4788999988886643221 2235788999998876423221110 1122 2688999888744444322111 236788
Q ss_pred CCEEEcccCCCChhHHHHHHhcCCCCc---EEEeecc-cCCHHHHHHHHhcCCCCC-eEeccCCCCCCHHHHHHHHhcCC
Q 016845 244 LETLSLDSEFIHNKGVHAVAQGCPLLR---VLKLQCI-NVTDEALVAVGNQCLSLE-LLALYSFQQFTDKGLHAVGKGCK 318 (381)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~l~~l~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~ 318 (381)
|++|++++|.+..- .. +..+++|+ .|+++.+ .+..-....+ ..+++|+ +|+++++. ++.-.. .... .+
T Consensus 107 L~~L~l~~n~l~~l--p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n~-l~~i~~-~~~~-~~ 179 (239)
T 2xwt_C 107 LKFLGIFNTGLKMF--PD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNNG-FTSVQG-YAFN-GT 179 (239)
T ss_dssp CCEEEEEEECCCSC--CC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSCC-CCEECT-TTTT-TC
T ss_pred CCEEeCCCCCCccc--cc-cccccccccccEEECCCCcchhhcCcccc-cchhcceeEEEcCCCC-CcccCH-hhcC-CC
Confidence 99999988766542 12 44567777 8888776 5543111111 2567888 88887753 331111 1122 26
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcC-CCCCEEeccCCCCCChHHHHHHHhcCCccceeEccc
Q 016845 319 KLKNLTLSDCYFLSDMGLEAIATGC-KELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNL 379 (381)
Q Consensus 319 ~L~~L~l~~~~~i~~~~l~~l~~~~-~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~ 379 (381)
+|++|+++++..++.-.- .....+ ++|+.|+++++ .++.-.. ..+++|+.|.+..
T Consensus 180 ~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N-~l~~l~~----~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQT-SVTALPS----KGLEHLKELIARN 235 (239)
T ss_dssp EEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTC-CCCCCCC----TTCTTCSEEECTT
T ss_pred CCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCC-ccccCCh----hHhccCceeeccC
Confidence 788899988743442111 123456 88999999884 4433111 1567888887754
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.68 E-value=4.6e-09 Score=95.04 Aligned_cols=56 Identities=9% Similarity=-0.089 Sum_probs=26.5
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCC
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 200 (381)
.+++|+.|+++++ .++. +. ...++|++|+++++.++.- .. ...+++|+.|+++++.
T Consensus 151 ~l~~L~~L~l~~N-~l~~--lp---~~~~~L~~L~L~~n~l~~l--~~-~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 151 NSSFLKIIDVDNN-SLKK--LP---DLPPSLEFIAAGNNQLEEL--PE-LQNLPFLTAIYADNNS 206 (454)
T ss_dssp TCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSSCCSSC--CC-CTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-cCcc--cC---CCcccccEEECcCCcCCcC--cc-ccCCCCCCEEECCCCc
Confidence 3566666666654 2221 11 1124566666666654431 11 2335555555555543
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.64 E-value=2.6e-08 Score=83.16 Aligned_cols=144 Identities=14% Similarity=0.177 Sum_probs=91.1
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcC
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 241 (381)
.+++|+.|+++++.++.-. . ...+++|+.|+++++. +..... .... ++|+.|+++++ .+.+. ..+ ..
T Consensus 39 ~l~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~L~~N~-i~~~~~---l~~l-~~L~~L~L~~N-~l~~l--~~~-~~- 105 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA--G-MQFFTNLKELHLSHNQ-ISDLSP---LKDL-TKLEELSVNRN-RLKNL--NGI-PS- 105 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT--T-GGGCTTCCEEECCSSC-CCCCGG---GTTC-SSCCEEECCSS-CCSCC--TTC-CC-
T ss_pred hcCcCcEEECcCCCcccch--H-HhhCCCCCEEECCCCc-cCCChh---hccC-CCCCEEECCCC-ccCCc--Ccc-cc-
Confidence 5789999999999876532 2 3457899999998876 433221 2333 78888888875 33221 111 12
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (381)
++|+.|++++|.++... .+..+++|+.|+++.+.+++.. . ...+++|+.|+++++. +++. .....+++|+
T Consensus 106 ~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~--~-l~~l~~L~~L~L~~N~-i~~~---~~l~~l~~L~ 175 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIV--M-LGFLSKLEVLDLHGNE-ITNT---GGLTRLKKVN 175 (263)
T ss_dssp SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCG--G-GGGCTTCCEEECTTSC-CCBC---TTSTTCCCCC
T ss_pred CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCCh--H-HccCCCCCEEECCCCc-Ccch---HHhccCCCCC
Confidence 77888888887776532 2455778888888777665431 2 2356778888887753 4332 2233467777
Q ss_pred EEeccCC
Q 016845 322 NLTLSDC 328 (381)
Q Consensus 322 ~L~l~~~ 328 (381)
.|+++++
T Consensus 176 ~L~l~~N 182 (263)
T 1xeu_A 176 WIDLTGQ 182 (263)
T ss_dssp EEEEEEE
T ss_pred EEeCCCC
Confidence 7777765
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.61 E-value=2.5e-09 Score=88.83 Aligned_cols=60 Identities=20% Similarity=0.119 Sum_probs=28.0
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCC
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 200 (381)
++++.|++.++. ++... ...+.++++|++|+++++.++.... .....+++|+.|+++++.
T Consensus 35 ~~l~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLS-DATFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred CCCCEEEccCCC-cCccC-HhHhcCcccCCEEECCCCcCCccCH-hHhccCCcCCEEECCCCc
Confidence 456666666542 22111 0112245666666666665543211 112235566666665543
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.60 E-value=8.5e-09 Score=93.29 Aligned_cols=137 Identities=17% Similarity=0.124 Sum_probs=72.2
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcC
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 217 (381)
++|+.|++.++ .++. +.. +..+++|++|+++++.++. +. ...++|++|+++++. +... .. ... .++
T Consensus 131 ~~L~~L~L~~n-~l~~--lp~-~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~-l~~l--~~-~~~-l~~ 196 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEK--LPE-LQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQ-LEEL--PE-LQN-LPF 196 (454)
T ss_dssp TTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSSC--CC-CTT-CTT
T ss_pred CCCCEEECcCC-CCCC--Ccc-cCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCc-CCcC--cc-ccC-CCC
Confidence 57888888765 3332 222 3467788888888877653 11 123578888887765 3221 11 122 267
Q ss_pred ccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeE
Q 016845 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELL 297 (381)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L 297 (381)
|+.|++.++. +.. +....++|+.|++++|.+..- .. +..+++|+.|+++.+.+.. +....++|+.|
T Consensus 197 L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~n~l~~l--p~-~~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L 262 (454)
T 1jl5_A 197 LTAIYADNNS-LKK-----LPDLPLSLESIVAGNNILEEL--PE-LQNLPFLTTIYADNNLLKT-----LPDLPPSLEAL 262 (454)
T ss_dssp CCEEECCSSC-CSS-----CCCCCTTCCEEECCSSCCSSC--CC-CTTCTTCCEEECCSSCCSS-----CCSCCTTCCEE
T ss_pred CCEEECCCCc-CCc-----CCCCcCcccEEECcCCcCCcc--cc-cCCCCCCCEEECCCCcCCc-----ccccccccCEE
Confidence 7777776642 221 111234666666666655421 11 3345666666666554432 11123455555
Q ss_pred eccCC
Q 016845 298 ALYSF 302 (381)
Q Consensus 298 ~l~~~ 302 (381)
+++++
T Consensus 263 ~l~~N 267 (454)
T 1jl5_A 263 NVRDN 267 (454)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55553
No 113
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.56 E-value=3.8e-09 Score=87.74 Aligned_cols=156 Identities=21% Similarity=0.182 Sum_probs=88.3
Q ss_pred CCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCC
Q 016845 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 243 (381)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 243 (381)
++++.|+++++.+....... ...+++|++|+++++. +..... ..... .++|+.|+++++ .+..... .....+++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~~~-l~~L~~L~L~~n-~l~~~~~-~~~~~l~~ 108 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDAT-FRGLTKLTWLNLDYNQ-LQTLSA-GVFDD-LTELGTLGLANN-QLASLPL-GVFDHLTQ 108 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSC-CCCCCT-TTTTT-CTTCCEEECTTS-CCCCCCT-TTTTTCTT
T ss_pred CCCCEEEccCCCcCccCHhH-hcCcccCCEEECCCCc-CCccCH-hHhcc-CCcCCEEECCCC-cccccCh-hHhcccCC
Confidence 56888888888765432222 2356788888887765 332111 11112 267888888774 3332211 11246778
Q ss_pred CCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEE
Q 016845 244 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNL 323 (381)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 323 (381)
|++|++++|.+..... ..+..+++|+.|+++.+.+....... ...+++|++|+++++. ++.... .....+++|+.|
T Consensus 109 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L 184 (251)
T 3m19_A 109 LDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAGA-FDKLTNLQTLSLSTNQ-LQSVPH-GAFDRLGKLQTI 184 (251)
T ss_dssp CCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEE
T ss_pred CCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHHH-cCcCcCCCEEECCCCc-CCccCH-HHHhCCCCCCEE
Confidence 8888888876653221 12345678888888776665321111 2246788888887753 331111 122347788888
Q ss_pred eccCCC
Q 016845 324 TLSDCY 329 (381)
Q Consensus 324 ~l~~~~ 329 (381)
+++++.
T Consensus 185 ~l~~N~ 190 (251)
T 3m19_A 185 TLFGNQ 190 (251)
T ss_dssp ECCSCC
T ss_pred EeeCCc
Confidence 888754
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.51 E-value=1.5e-09 Score=100.79 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=77.5
Q ss_pred CCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCC
Q 016845 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (381)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (381)
..|+.|++++|.++.- .. +..+++|+.|+++.+.+.. +......+++|+.|+++++. ++. +. -...+++|+
T Consensus 441 ~~L~~L~Ls~n~l~~l--p~-~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~-l~~--lp-~l~~l~~L~ 511 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVL--CH-LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA-LEN--VD-GVANLPRLQ 511 (567)
T ss_dssp TTCSEEECTTSCCSSC--CC-GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC-CCC--CG-GGTTCSSCC
T ss_pred cCceEEEecCCCCCCC--cC-ccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCCC-CCC--Cc-ccCCCCCCc
Confidence 3577888887766542 22 4557788888887776652 22223367888888887753 432 22 234578888
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChH--HHHHHHhcCCccceeEc
Q 016845 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTM--GLESIGKFCRYASFCRL 377 (381)
Q Consensus 322 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~--~~~~l~~~~~~L~~l~l 377 (381)
.|+++++. ++.......+..+++|+.|++++++ ++.. ....+...+|+|+.|.+
T Consensus 512 ~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 88888863 5432102223568889999998853 3321 23455566888888853
No 115
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.49 E-value=2e-08 Score=82.13 Aligned_cols=45 Identities=18% Similarity=0.049 Sum_probs=41.0
Q ss_pred cccCCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhcccceeeec
Q 016845 7 INTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIG 53 (381)
Q Consensus 7 i~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~ 53 (381)
+. .||+||+.+||+||+ ++|+++++.|||+|+.++....+|..+-
T Consensus 5 l~-~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~D~~LWr~~l 49 (312)
T 3l2o_B 5 LT-RLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVRDPILWRYFL 49 (312)
T ss_dssp HH-HSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHTCHHHHHHHH
T ss_pred hH-hCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 45 899999999999999 7999999999999999999988887653
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.45 E-value=9.7e-08 Score=74.50 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=25.5
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCC
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 199 (381)
+++|+.|++.++ .++. +..+....++|+.|++++|.+++- . ....+++|+.|+++++
T Consensus 18 ~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~-~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNEIRKL--D-GFPLLRRLKTLLVNNN 74 (176)
T ss_dssp TTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSCCCEE--C-CCCCCSSCCEEECCSS
T ss_pred cCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCCCCCcc--c-ccccCCCCCEEECCCC
Confidence 456666666654 2221 122222233566666666554432 1 1123445555555443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.45 E-value=2.1e-09 Score=99.68 Aligned_cols=197 Identities=15% Similarity=0.092 Sum_probs=124.9
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeecccc------------ChhHHHHHHhhCCCCCeEe-ccCCCCCC
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYV------------GDQGLAAVGKVCNQLEDLN-LRFCEGLT 203 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~ 203 (381)
+++|+.|++++. .+ ..++..++.+++|+.|+++++.. .....+.....+++|+.|+ +.... +.
T Consensus 348 ~~~L~~L~Ls~n-~L--~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~ 423 (567)
T 1dce_A 348 DEQLFRCELSVE-KS--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LD 423 (567)
T ss_dssp TTTSSSCCCCHH-HH--HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HH
T ss_pred CccceeccCChh-hH--HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cc
Confidence 678888888763 22 35666677888999999866541 0112223334466677776 33211 11
Q ss_pred h--------HHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEee
Q 016845 204 D--------TGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQ 275 (381)
Q Consensus 204 ~--------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 275 (381)
. ..+..+. ...|+.|+++++ .++.. .. ...+++|+.|++++|.+.. +...+..+++|+.|+++
T Consensus 424 ~L~~l~l~~n~i~~l~---~~~L~~L~Ls~n-~l~~l--p~-~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 424 DLRSKFLLENSVLKME---YADVRVLHLAHK-DLTVL--CH-LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQAS 494 (567)
T ss_dssp HHHHHHHHHHHHHHHH---HTTCSEEECTTS-CCSSC--CC-GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECC
T ss_pred hhhhhhhhcccccccC---ccCceEEEecCC-CCCCC--cC-ccccccCcEeecCcccccc--cchhhhcCCCCCEEECC
Confidence 1 1122222 147999999986 44332 22 3578999999999998763 33345678999999999
Q ss_pred cccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHH--HHHHHHhcCCCCCEEec
Q 016845 276 CINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDM--GLEAIATGCKELTHLEI 351 (381)
Q Consensus 276 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~--~l~~l~~~~~~L~~L~l 351 (381)
.+.++. +.. ...+++|+.|+++++. ++..........+++|+.|+++++. ++.. ....+...+|+|+.|++
T Consensus 495 ~N~l~~--lp~-l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 495 DNALEN--VDG-VANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCC--CGG-GTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCC--Ccc-cCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 888875 333 3368999999999864 4432201223458999999999974 4321 23345566899999864
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.43 E-value=7e-08 Score=75.32 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=86.7
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|++.++ .+... ..+....++|+.|++++|.+... ..+..+++|+.|+++.+.+..-.. .+...+++|+
T Consensus 19 ~~L~~L~l~~n-~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 91 (176)
T 1a9n_A 19 VRDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGE-GLDQALPDLT 91 (176)
T ss_dssp TSCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECS-CHHHHCTTCC
T ss_pred CCceEEEeeCC-CCchh--HHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCc-chhhcCCCCC
Confidence 68999999986 33321 23434456999999999887753 234567899999998887764211 1223678999
Q ss_pred eEeccCCCCCCH-HHHHHHHhcCCCCCEEeccCCCCCCH--HHHHHHHhcCCCCCEEeccCCC
Q 016845 296 LLALYSFQQFTD-KGLHAVGKGCKKLKNLTLSDCYFLSD--MGLEAIATGCKELTHLEINGCH 355 (381)
Q Consensus 296 ~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~i~~--~~l~~l~~~~~~L~~L~l~~c~ 355 (381)
+|+++++. +++ ..+. ....+++|+.|+++++. ++. .....++..+|+|+.|+++++.
T Consensus 92 ~L~L~~N~-i~~~~~~~-~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLD-PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCC-CCCGGGGG-GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCc-CCcchhhH-hhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99998864 432 2222 23458999999999874 432 1112345669999999998864
No 119
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.42 E-value=9.8e-08 Score=79.20 Aligned_cols=45 Identities=29% Similarity=0.507 Sum_probs=39.5
Q ss_pred cccccCCCHHHHHHHHhcCCChhhhh-hHHHhhhhHHHhhhcccceee
Q 016845 5 DRINTCLPDEVILEIFRHLDSKASRD-ACSLVCRRWLTLERLSRTTLR 51 (381)
Q Consensus 5 ~~i~~~LP~eil~~If~~L~~~~d~~-~~~~Vcr~W~~~~~~~~~~~~ 51 (381)
..+. .||+|++.+||++|+ .++++ +|++|||+|+.++.++.+|..
T Consensus 49 ~~~~-~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~~~~~w~~ 94 (297)
T 2e31_A 49 EYLA-ELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVDGAPLWLL 94 (297)
T ss_dssp CCTT-SSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHTSHHHHHH
T ss_pred cChh-hCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhcChHHHHH
Confidence 3466 899999999999999 69999 999999999999888766654
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.40 E-value=5.7e-08 Score=89.83 Aligned_cols=191 Identities=17% Similarity=0.098 Sum_probs=115.0
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCc
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (381)
+.+|+.|++.++ .++. ++.- -+++|+.|+|++|.++. ++ ..+++|+.|+++++. ++. +.. ...
T Consensus 58 ~~~L~~L~Ls~n-~L~~--lp~~--l~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~--ip~----l~~ 120 (571)
T 3cvr_A 58 INQFSELQLNRL-NLSS--LPDN--LPPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LST--LPE----LPA 120 (571)
T ss_dssp HTTCSEEECCSS-CCSC--CCSC--CCTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSC--CCC----CCT
T ss_pred cCCccEEEeCCC-CCCc--cCHh--HcCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCC--cch----hhc
Confidence 358899999875 3332 2211 14789999999988763 22 346889999998775 433 111 124
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCe
Q 016845 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (381)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (381)
+|+.|+++++ .++. +.. .+++|+.|++++|.++... ..+++|+.|+++.|.++. +..+ .++|+.
T Consensus 121 ~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~l~~lp-----~~l~~L~~L~Ls~N~L~~--lp~l---~~~L~~ 184 (571)
T 3cvr_A 121 SLKHLDVDNN-QLTM--LPE---LPALLEYINADNNQLTMLP-----ELPTSLEVLSVRNNQLTF--LPEL---PESLEA 184 (571)
T ss_dssp TCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSC--CCCC---CTTCCE
T ss_pred CCCEEECCCC-cCCC--CCC---cCccccEEeCCCCccCcCC-----CcCCCcCEEECCCCCCCC--cchh---hCCCCE
Confidence 8999999885 3332 111 5788999999888776422 146789999998777654 2221 178999
Q ss_pred EeccCCCCCCHH-HHH-HHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHH
Q 016845 297 LALYSFQQFTDK-GLH-AVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESI 365 (381)
Q Consensus 297 L~l~~~~~~~~~-~~~-~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l 365 (381)
|+++++. ++.- .+. .+....+.|+.|+++++. ++. +..-+..+++|+.|+++++ .++......+
T Consensus 185 L~Ls~N~-L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~--lp~~l~~l~~L~~L~L~~N-~l~~~~p~~l 250 (571)
T 3cvr_A 185 LDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENR-ITH--IPENILSLDPTCTIILEDN-PLSSRIRESL 250 (571)
T ss_dssp EECCSSC-CSSCCCCC--------CCEEEECCSSC-CCC--CCGGGGGSCTTEEEECCSS-SCCHHHHHHH
T ss_pred EECcCCC-CCchhhHHHhhhcccccceEEecCCCc-cee--cCHHHhcCCCCCEEEeeCC-cCCCcCHHHH
Confidence 9998753 3310 010 111112333889998863 542 2222234889999999985 4655544433
No 121
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.34 E-value=1.2e-05 Score=62.84 Aligned_cols=122 Identities=10% Similarity=0.119 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCCCCEEEcccC-CCChhHHHHHHhc---CCCCcEEEeecccCCHHHHHHHH---hcCCCCCeEeccCCCC
Q 016845 232 VSLEAVGSHCKSLETLSLDSE-FIHNKGVHAVAQG---CPLLRVLKLQCINVTDEALVAVG---NQCLSLELLALYSFQQ 304 (381)
Q Consensus 232 ~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~ 304 (381)
..+..+...-+.|++|+++++ .+.+++...+... -+.|+.|+|+.+.+.+.+...++ ..-+.|++|+|+. ..
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~ 109 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NF 109 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SB
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-Cc
Confidence 445666667789999999985 8998887766543 45799999999999887654443 3457899999988 45
Q ss_pred CCHHHHHHHHhcC---CCCCEEeccCCC--CCCHHHHH---HHHhcCCCCCEEeccCC
Q 016845 305 FTDKGLHAVGKGC---KKLKNLTLSDCY--FLSDMGLE---AIATGCKELTHLEINGC 354 (381)
Q Consensus 305 ~~~~~~~~l~~~~---~~L~~L~l~~~~--~i~~~~l~---~l~~~~~~L~~L~l~~c 354 (381)
+++.+...++..+ +.|++|+++++. .+++.+-. ..+..-+.|+.|+++.+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 8999888877654 469999998652 46776544 44445678999999864
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.34 E-value=7.9e-09 Score=83.18 Aligned_cols=132 Identities=20% Similarity=0.123 Sum_probs=62.1
Q ss_pred CCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCC
Q 016845 188 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 267 (381)
Q Consensus 188 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 267 (381)
.++|++|+++++. +..... ..... .++|+.|++.++ .+..... .....+++|++|++++|.+.... ...+..++
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~-~~~~~-l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~ 100 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLPN-GVFDE-LTSLTQLYLGGN-KLQSLPN-GVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLT 100 (208)
T ss_dssp CTTCSEEECCSSC-CCCCCT-TTTTT-CTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCT
T ss_pred CCCCcEEEcCCCc-cCcCCh-hhhcc-cccCcEEECCCC-ccCccCh-hhcCCCCCcCEEECCCCcCCccC-HhHhcCcc
Confidence 3567888877654 322110 11112 256777777664 2222111 11235667777777766554321 11223456
Q ss_pred CCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 016845 268 LLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDC 328 (381)
Q Consensus 268 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (381)
+|+.|+++.+.+...... ....+++|++|+++++. ++... ......+++|++|+++++
T Consensus 101 ~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDG-VFDKLTQLKDLRLYQNQ-LKSVP-DGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSC
T ss_pred CCCEEEcCCCcCcccCHh-HhccCCcCCEEECCCCc-cceeC-HHHhccCCCccEEEecCC
Confidence 677777765555421111 11245666666666542 22110 011223566666666654
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.34 E-value=1.9e-07 Score=74.32 Aligned_cols=110 Identities=17% Similarity=0.099 Sum_probs=58.0
Q ss_pred HHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHH
Q 016845 159 LAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVG 238 (381)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 238 (381)
.+..+++|++|+++++.++.- +. ...+++|+.|+++++. +.. +....... ++|+.|+++++ .+... ..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l--~~-~~~l~~L~~L~l~~n~-l~~--l~~~~~~~-~~L~~L~L~~N-~l~~l--~~~- 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKI--SS-LSGMENLRILSLGRNL-IKK--IENLDAVA-DTLEELWISYN-QIASL--SGI- 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCC--CC-HHHHTTCCEEEEEEEE-ECS--CSSHHHHH-HHCSEEEEEEE-ECCCH--HHH-
T ss_pred HHhcCCCCCEEECCCCCCccc--cc-cccCCCCCEEECCCCC-ccc--ccchhhcC-CcCCEEECcCC-cCCcC--Ccc-
Confidence 445678888888888776552 22 2346778888777654 221 11111111 46666666664 23321 122
Q ss_pred hcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccC
Q 016845 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (381)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (381)
..+++|+.|++++|.+........+..+++|+.|+++++.+
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 24566666666666555433222334456666666655544
No 124
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.33 E-value=8.4e-08 Score=90.90 Aligned_cols=203 Identities=18% Similarity=0.109 Sum_probs=115.0
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcC
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 217 (381)
+++++|++++. .++.-. ...+.++++|++|+|++|.++.-. ......+++|++|+|+++. +..... ...... ++
T Consensus 52 ~~~~~LdLs~N-~i~~l~-~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~-~~f~~L-~~ 125 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLG-SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLAL-GAFSGL-SS 125 (635)
T ss_dssp TTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECG-GGGTTC-TT
T ss_pred cCCCEEEeeCC-CCCCCC-HHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCH-HHhcCC-CC
Confidence 47899999875 343211 112347899999999998865421 1223457899999998875 432111 111222 78
Q ss_pred ccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCH---HHHHHHHhcCCCC
Q 016845 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTD---EALVAVGNQCLSL 294 (381)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~l~~l~~~~~~L 294 (381)
|++|++.++ .+...... ....+++|++|++++|.+........+..+++|+.|+++.+.+.. ..+..+.......
T Consensus 126 L~~L~Ls~N-~l~~l~~~-~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 126 LQKLVAVET-NLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp CCEEECTTS-CCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCEEECCCC-cCCCCChh-hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 999998885 33221111 124678899999988876543333445567889999988766543 3344443222334
Q ss_pred CeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEecc
Q 016845 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEIN 352 (381)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~ 352 (381)
..++++... ++..... ......++.+.+.+.. ............++.++...+.
T Consensus 204 ~~~~ls~n~-l~~i~~~--~~~~~~~~~l~l~~n~-~~~~~~~~~~~~l~~l~~~~l~ 257 (635)
T 4g8a_A 204 LSLDLSLNP-MNFIQPG--AFKEIRLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLV 257 (635)
T ss_dssp CEEECTTCC-CCEECTT--TTTTCEEEEEEEESCC-SSHHHHHHHHHTTTTCEEEEEE
T ss_pred hhhhcccCc-ccccCcc--cccchhhhhhhhhccc-ccccccchhhcCCccccccccc
Confidence 456665432 2210000 0112345667776642 3444455556667777766554
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.33 E-value=1.7e-07 Score=74.69 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=67.2
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|+++++ .+.... .+ ..+++|+.|++++|.+.. +......+++|+.|+++.+.+..- ..+. .+++|+
T Consensus 48 ~~L~~L~ls~n-~l~~l~--~~-~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l--~~~~-~l~~L~ 118 (198)
T 1ds9_A 48 KACKHLALSTN-NIEKIS--SL-SGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASL--SGIE-KLVNLR 118 (198)
T ss_dssp TTCSEEECSEE-EESCCC--CH-HHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCH--HHHH-HHHHSS
T ss_pred CCCCEEECCCC-CCcccc--cc-ccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcC--Cccc-cCCCCC
Confidence 67777777764 222211 12 356777777777765542 222233346777777776666542 2222 456777
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHH---------HHHHHHhcCCCCCEEe
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDM---------GLEAIATGCKELTHLE 350 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~---------~l~~l~~~~~~L~~L~ 350 (381)
+|+++++. +++.........+++|++|+++++. ++.. ....++..+|+|+.|+
T Consensus 119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 77777643 4332211223347777777777753 3221 1123345577777776
No 126
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.30 E-value=1.8e-05 Score=61.77 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=88.0
Q ss_pred HHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHh---cCCCCCEEEcccCCCChhHHHHHH---hcCCCCcEEEeeccc
Q 016845 205 TGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGS---HCKSLETLSLDSEFIHNKGVHAVA---QGCPLLRVLKLQCIN 278 (381)
Q Consensus 205 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 278 (381)
..+..+.... +.|++|++.+...+.+.+...++. .-..|+.|++++|.+++.+...+. ..-+.|+.|+|+.+.
T Consensus 31 ~~l~~ll~~n-~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 31 SCINRLREDD-TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHTTC-SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHhcC-CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3455555544 689999998755788887766654 346799999999999887755443 345789999999999
Q ss_pred CCHHHHHHHHhc---CCCCCeEeccCCC--CCCHHHHHHH---HhcCCCCCEEeccCC
Q 016845 279 VTDEALVAVGNQ---CLSLELLALYSFQ--QFTDKGLHAV---GKGCKKLKNLTLSDC 328 (381)
Q Consensus 279 ~~~~~l~~l~~~---~~~L~~L~l~~~~--~~~~~~~~~l---~~~~~~L~~L~l~~~ 328 (381)
+.+.+...+... -+.|++|+|+++. .+.+.+...+ ...-+.|+.|+++.+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 999887766543 3579999997542 4677654443 344578999999764
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.27 E-value=4.3e-07 Score=83.97 Aligned_cols=181 Identities=18% Similarity=0.106 Sum_probs=117.7
Q ss_pred CCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCC
Q 016845 163 CIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 242 (381)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 242 (381)
+.+|+.|+++++.++. ++. ...++|+.|+++++. ++... ...++|+.|+++++ .++. +..+ ..
T Consensus 58 ~~~L~~L~Ls~n~L~~--lp~--~l~~~L~~L~Ls~N~-l~~ip------~~l~~L~~L~Ls~N-~l~~--ip~l---~~ 120 (571)
T 3cvr_A 58 INQFSELQLNRLNLSS--LPD--NLPPQITVLEITQNA-LISLP------ELPASLEYLDACDN-RLST--LPEL---PA 120 (571)
T ss_dssp HTTCSEEECCSSCCSC--CCS--CCCTTCSEEECCSSC-CSCCC------CCCTTCCEEECCSS-CCSC--CCCC---CT
T ss_pred cCCccEEEeCCCCCCc--cCH--hHcCCCCEEECcCCC-Ccccc------cccCCCCEEEccCC-CCCC--cchh---hc
Confidence 4589999999998764 221 124789999999876 44211 22489999999986 3433 1111 22
Q ss_pred CCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCE
Q 016845 243 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKN 322 (381)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 322 (381)
+|+.|++++|.++.-. . .+++|+.|+++++.++. +. ..+++|+.|+++++. ++. +..+ .++|+.
T Consensus 121 ~L~~L~Ls~N~l~~lp--~---~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~-L~~--lp~l---~~~L~~ 184 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLP--E---LPALLEYINADNNQLTM--LP---ELPTSLEVLSVRNNQ-LTF--LPEL---PESLEA 184 (571)
T ss_dssp TCCEEECCSSCCSCCC--C---CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSC--CCCC---CTTCCE
T ss_pred CCCEEECCCCcCCCCC--C---cCccccEEeCCCCccCc--CC---CcCCCcCEEECCCCC-CCC--cchh---hCCCCE
Confidence 8999999998876521 1 57899999999888764 21 146899999999864 432 1111 289999
Q ss_pred EeccCCCCCCHHH-HH-HHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcccC
Q 016845 323 LTLSDCYFLSDMG-LE-AIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLNLN 380 (381)
Q Consensus 323 L~l~~~~~i~~~~-l~-~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~~~ 380 (381)
|+++++. ++.-. +. .+....+.|+.|+++++ .++. +..-...+++|+.|+|+.|
T Consensus 185 L~Ls~N~-L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 185 LDVSTNL-LESLPAVPVRNHHSEETEIFFRCREN-RITH--IPENILSLDPTCTIILEDN 240 (571)
T ss_dssp EECCSSC-CSSCCCCC--------CCEEEECCSS-CCCC--CCGGGGGSCTTEEEECCSS
T ss_pred EECcCCC-CCchhhHHHhhhcccccceEEecCCC-ccee--cCHHHhcCCCCCEEEeeCC
Confidence 9999973 54210 00 11122234499999995 4553 3332234899999999876
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.24 E-value=1.3e-07 Score=77.24 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=7.5
Q ss_pred hCCCCCEEEeecccc
Q 016845 162 KCIHLKSLDLQGCYV 176 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~ 176 (381)
.+++|++|+|+++.+
T Consensus 62 ~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 62 SLINLKELYLGSNQL 76 (229)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred CccCCcEEECCCCCC
Confidence 345555555555544
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=1.9e-08 Score=87.07 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccC
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVG 177 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 177 (381)
+++++|.+.+ .+....+..+...+++|+.|+|+++.+.
T Consensus 25 ~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~i~ 62 (329)
T 3sb4_A 25 NSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAEIK 62 (329)
T ss_dssp HHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEEEC
T ss_pred CceeEEEEec--cccHHHHHHHHHhhccCeEEecCcceeE
Confidence 4566666665 3455555555444677777777766654
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.23 E-value=1e-07 Score=83.64 Aligned_cols=38 Identities=18% Similarity=0.003 Sum_probs=18.4
Q ss_pred hCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCC
Q 016845 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 200 (381)
.+++|+.|+|+++.++..... ....+++|++|+++++.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSE-AFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred cccccCEEECCCCcCCccChh-hccCCCCCCEEECCCCc
Confidence 455666666666554432111 11234556666665543
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.22 E-value=6.4e-08 Score=84.94 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=16.9
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccC
Q 016845 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (381)
.+++|+.|++++|.+..... ..+..+++|+.|+++.+.+
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC
T ss_pred CCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcC
Confidence 44555555555544432111 1123345555555544444
No 132
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.21 E-value=1.7e-07 Score=88.79 Aligned_cols=156 Identities=18% Similarity=0.129 Sum_probs=81.5
Q ss_pred CCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCC
Q 016845 189 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 268 (381)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 268 (381)
+++++|+|+++. ++...-.. ...+ ++|+.|+++++ .++...... ...+++|++|++++|.+..-.. ..+.++++
T Consensus 52 ~~~~~LdLs~N~-i~~l~~~~-f~~l-~~L~~L~Ls~N-~i~~i~~~~-f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~~ 125 (635)
T 4g8a_A 52 FSTKNLDLSFNP-LRHLGSYS-FFSF-PELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNPIQSLAL-GAFSGLSS 125 (635)
T ss_dssp TTCCEEECTTSC-CCEECTTT-TTTC-TTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCCCCEECG-GGGTTCTT
T ss_pred cCCCEEEeeCCC-CCCCCHHH-HhCC-CCCCEEECCCC-cCCCcChhH-hcCCCCCCEEEccCCcCCCCCH-HHhcCCCC
Confidence 368888888754 43211111 1222 67888888775 333221111 2467788888888776654221 22456777
Q ss_pred CcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC---HHHHHHHHhcCCC
Q 016845 269 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLS---DMGLEAIATGCKE 345 (381)
Q Consensus 269 L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~---~~~l~~l~~~~~~ 345 (381)
|+.|+++.+.+..-.-.. ...+++|++|+++++. ++..........+++|++|+++++. ++ ...+..+......
T Consensus 126 L~~L~Ls~N~l~~l~~~~-~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTC
T ss_pred CCEEECCCCcCCCCChhh-hhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhh
Confidence 888888766554311101 1246777778777643 2221112223446777777777752 32 2334333332223
Q ss_pred CCEEeccC
Q 016845 346 LTHLEING 353 (381)
Q Consensus 346 L~~L~l~~ 353 (381)
+..++++.
T Consensus 203 ~~~~~ls~ 210 (635)
T 4g8a_A 203 NLSLDLSL 210 (635)
T ss_dssp CCEEECTT
T ss_pred hhhhhccc
Confidence 44555554
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.19 E-value=1.2e-07 Score=76.79 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=7.0
Q ss_pred hCCCCCEEEeecccc
Q 016845 162 KCIHLKSLDLQGCYV 176 (381)
Q Consensus 162 ~~~~L~~L~l~~~~~ 176 (381)
.+++|+.|+|+++.+
T Consensus 55 ~l~~L~~L~L~~N~i 69 (220)
T 2v70_A 55 KLPQLRKINFSNNKI 69 (220)
T ss_dssp GCTTCCEEECCSSCC
T ss_pred cCCCCCEEECCCCcC
Confidence 344444444444443
No 134
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.16 E-value=1.2e-07 Score=76.91 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=62.6
Q ss_pred CCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCC
Q 016845 189 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 268 (381)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 268 (381)
++|+.|+++++. +...... .... .++|+.|+++++ .+.......+ ..+++|++|++++|.+.... ...+..+++
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~-~~~~-l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPG-AFSP-YKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVLYGNKITELP-KSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSSC-CCEECTT-SSTT-CTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEECCSSCCCCCC-TTTTTTCTT
T ss_pred cCCCEEECCCCc-CCCcCHh-HhhC-CCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEECCCCcCCccC-HhHccCCCC
Confidence 577888887654 3321100 1111 256777777664 3332211112 35667777777776654321 112344666
Q ss_pred CcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 016845 269 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDC 328 (381)
Q Consensus 269 L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (381)
|+.|+++.+.+.......+ ..+++|++|+++++. ++.... .....+++|+.|+++++
T Consensus 106 L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAF-QDLHNLNLLSLYDNK-LQTIAK-GTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCCCCEeCHHHc-CCCCCCCEEECCCCc-CCEECH-HHHhCCCCCCEEEeCCC
Confidence 7777776655543211111 134666666666543 221110 11123556666666654
No 135
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.15 E-value=1e-07 Score=77.25 Aligned_cols=150 Identities=19% Similarity=0.177 Sum_probs=70.2
Q ss_pred CEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCE
Q 016845 167 KSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLET 246 (381)
Q Consensus 167 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 246 (381)
+.++++++.++. ++. ...+.++.|+++++. +........... .++|+.|++.++ .++......+ ..+++|+.
T Consensus 14 ~~l~~s~n~l~~--iP~--~~~~~~~~L~L~~N~-l~~~~~~~~~~~-l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQKLNK--IPE--HIPQYTAELRLNNNE-FTVLEATGIFKK-LPQLRKINFSNN-KITDIEEGAF-EGASGVNE 85 (220)
T ss_dssp TEEECCSSCCSS--CCS--CCCTTCSEEECCSSC-CCEECCCCCGGG-CTTCCEEECCSS-CCCEECTTTT-TTCTTCCE
T ss_pred CEeEeCCCCccc--Ccc--CCCCCCCEEEcCCCc-CCccCchhhhcc-CCCCCEEECCCC-cCCEECHHHh-CCCCCCCE
Confidence 466776665543 111 113467788887655 332110011112 256777777664 2332211112 35667777
Q ss_pred EEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEecc
Q 016845 247 LSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLS 326 (381)
Q Consensus 247 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 326 (381)
|++++|.+..... ..+..+++|+.|+++.+.+.......+ ..+++|+.|+++++. ++.... .....+++|+.|+++
T Consensus 86 L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 86 ILLTSNRLENVQH-KMFKGLESLKTLMLRSNRITCVGNDSF-IGLSSVRLLSLYDNQ-ITTVAP-GAFDTLHSLSTLNLL 161 (220)
T ss_dssp EECCSSCCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTTSS-TTCTTCSEEECTTSC-CCCBCT-TTTTTCTTCCEEECC
T ss_pred EECCCCccCccCH-hHhcCCcCCCEEECCCCcCCeECHhHc-CCCccCCEEECCCCc-CCEECH-HHhcCCCCCCEEEec
Confidence 7777665543221 123446667777776555542111111 134566666665532 221100 111235566666666
Q ss_pred CC
Q 016845 327 DC 328 (381)
Q Consensus 327 ~~ 328 (381)
++
T Consensus 162 ~N 163 (220)
T 2v70_A 162 AN 163 (220)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 136
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.15 E-value=1.9e-07 Score=75.73 Aligned_cols=60 Identities=15% Similarity=0.092 Sum_probs=31.4
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCC
Q 016845 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 200 (381)
++|+.|++.+. .++... ...+..+++|+.|+|+++.++...... ...+++|+.|+++++.
T Consensus 32 ~~l~~L~l~~n-~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTT-TTTCSSCCEEECCSSC
T ss_pred cCCCEEECCCC-cCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCCCc
Confidence 46777777664 232111 011235667777777777655322111 2345667777776554
No 137
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.15 E-value=3.5e-07 Score=74.61 Aligned_cols=131 Identities=15% Similarity=0.057 Sum_probs=85.6
Q ss_pred CCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCC
Q 016845 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 243 (381)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 243 (381)
++|+.|+|+++.+..... .....+++|+.|+++++. +..... ..... .++|+.|+++++ .++.... .....+++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~-l~~i~~-~~~~~-l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQ-LGALPV-GVFDS-LTQLTVLDLGTN-QLTVLPS-AVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTT-CTTCCEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred CCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCC-CCCcCh-hhccc-CCCcCEEECCCC-cCCccCh-hHhCcchh
Confidence 789999999888765322 223457899999999876 332111 11122 378999999885 3332211 12247889
Q ss_pred CCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCC
Q 016845 244 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQ 303 (381)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 303 (381)
|+.|++++|.+.. +...+..+++|+.|+++.+.+..-.. .....+++|+.|++.++.
T Consensus 114 L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 114 LKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred hCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 9999999988763 22223568999999998877753221 122357899999998864
No 138
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.12 E-value=3.2e-07 Score=73.70 Aligned_cols=61 Identities=21% Similarity=0.097 Sum_probs=31.9
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCC
Q 016845 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE 200 (381)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 200 (381)
.++|+.|++.++ .++.. ....+..+++|++|+++++.++... ......+++|++|+++++.
T Consensus 27 ~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSL-PNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp CTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCCcEEEcCCC-ccCcC-ChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCc
Confidence 356777777764 23211 1112235677777777777655321 1122345667777766543
No 139
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.10 E-value=7.8e-07 Score=80.74 Aligned_cols=48 Identities=25% Similarity=0.288 Sum_probs=42.1
Q ss_pred CccccccCCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhc-ccceeee
Q 016845 3 GHDRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERL-SRTTLRI 52 (381)
Q Consensus 3 ~~~~i~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~-~~~~~~~ 52 (381)
..|.|. .||+||+.+||+||+ .+|++++++|||+|++++.. ...|..+
T Consensus 11 ~~d~~~-~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~~~~~w~~~ 59 (464)
T 3v7d_B 11 KRDLIT-SLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRKSTSLWKKL 59 (464)
T ss_dssp CCCHHH-HSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred ccCChH-HCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 357788 899999999999999 69999999999999999887 6666654
No 140
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.04 E-value=7.9e-07 Score=80.07 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=42.0
Q ss_pred CccccccCCCHH----HHHHHHhcCCChhhhhhHHHhhhhHHHhhhcccceeee
Q 016845 3 GHDRINTCLPDE----VILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRI 52 (381)
Q Consensus 3 ~~~~i~~~LP~e----il~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~ 52 (381)
..|.+. .||+| |+.+||+||+ .+|++++++|||+|+.++....+|..+
T Consensus 7 ~~d~~~-~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~~~~w~~~ 58 (435)
T 1p22_A 7 QRDFIT-ALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTSDGMLWKKL 58 (435)
T ss_dssp CCCHHH-HTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred hcChHH-HCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 457788 89999 9999999999 699999999999999998877666543
No 141
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.94 E-value=4e-06 Score=75.68 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=41.1
Q ss_pred CccccccCCCHHHHHHHHhcCCChhhhhhHHHhhhhHHHhhhcccceee
Q 016845 3 GHDRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLR 51 (381)
Q Consensus 3 ~~~~i~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~ 51 (381)
..|.+. .||+|++.+||+||+ .+|++++++|||+|+.++.....|..
T Consensus 15 ~~d~~~-~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~~~~~w~~ 61 (445)
T 2ovr_B 15 QRDFIS-LLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAEDNLLWRE 61 (445)
T ss_dssp CCSTTT-SSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHTCSHHHHH
T ss_pred cCChhH-HCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcCchhHhhh
Confidence 357788 999999999999999 69999999999999999877655553
No 142
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.91 E-value=1.8e-08 Score=88.07 Aligned_cols=14 Identities=7% Similarity=0.055 Sum_probs=7.4
Q ss_pred hCCCCCEEEeeccc
Q 016845 162 KCIHLKSLDLQGCY 175 (381)
Q Consensus 162 ~~~~L~~L~l~~~~ 175 (381)
++++|++|+|++|.
T Consensus 52 ~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 52 GFGDLEKIEISQND 65 (350)
T ss_dssp TCTTCCEEEEECCT
T ss_pred CCCCCCEEECcCCC
Confidence 44555555555554
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=1.5e-06 Score=75.18 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=50.9
Q ss_pred CCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCC--h---HHH--------------HHHHhh--------cC
Q 016845 163 CIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLT--D---TGL--------------VDLAHG--------CG 215 (381)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~---~~~--------------~~~~~~--------~~ 215 (381)
++++++|.+++. +....+..+...+++|+.|+|+++. +. . ..+ ...... +
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~- 100 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK- 100 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC-
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcce-eEEecCccccccccccccccccccCHHHhccccccccccc-
Confidence 457999999975 4555566665558999999998765 22 0 000 001122 3
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF 253 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 253 (381)
++|+.+.+.. .+...+-.+ ...|++|+.+++..+.
T Consensus 101 ~~L~~l~L~~--~i~~I~~~a-F~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 101 QTLEKVILSE--KIKNIEDAA-FKGCDNLKICQIRKKT 135 (329)
T ss_dssp TTCCC-CBCT--TCCEECTTT-TTTCTTCCEEEBCCSS
T ss_pred CCCcEEECCc--cccchhHHH-hhcCcccceEEcCCCC
Confidence 6788888866 222222112 2478889998887764
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.72 E-value=5.2e-06 Score=65.59 Aligned_cols=107 Identities=17% Similarity=0.078 Sum_probs=59.9
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++++.|++.++ .++... .....+++|+.|++++|.++.... ..+..+++|+.|+++.+.+.......+ ..+++|+
T Consensus 31 ~~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVP--KELSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRLRCIPPRTF-DGLKSLR 105 (193)
T ss_dssp TTCCEEECCSS-CCCSCC--GGGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCC
T ss_pred CCCCEEECCCC-cCchhH--HHhhcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCCccCEeCHHHh-CCCCCCC
Confidence 57888888774 333211 123467888888888876654221 123456778888887666653221112 2456777
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 329 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 329 (381)
+|+++++. ++... ......+++|+.|+++++.
T Consensus 106 ~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 106 LLSLHGND-ISVVP-EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp EEECCSSC-CCBCC-TTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCC-CCeeC-hhhhhcCccccEEEeCCCC
Confidence 77777643 32111 0112336677777776643
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.67 E-value=2.4e-06 Score=67.52 Aligned_cols=109 Identities=15% Similarity=0.077 Sum_probs=62.8
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++++.|++.++ .+...........+++|++|++++|.++... ...+..+++|+.|+++.+.+.......+ ..+++|+
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~ 105 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNKMF-LGLHQLK 105 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSSSS-TTCTTCC
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHHHh-cCCCCCC
Confidence 57888888874 3332221112346788888888887765432 1223457788888887776654221111 2457788
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 329 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 329 (381)
+|+++++. ++..... ....+++|++|+++++.
T Consensus 106 ~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 106 TLNLYDNQ-ISCVMPG-SFEHLNSLTSLNLASNP 137 (192)
T ss_dssp EEECCSSC-CCEECTT-SSTTCTTCCEEECTTCC
T ss_pred EEECCCCc-CCeeCHH-HhhcCCCCCEEEeCCCC
Confidence 88887743 3321111 12346777777777753
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.61 E-value=6e-06 Score=65.20 Aligned_cols=39 Identities=21% Similarity=0.063 Sum_probs=17.7
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccC
Q 016845 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (381)
.+++|++|++++|.++... ...+..+++|+.|+++.+.+
T Consensus 100 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCB
T ss_pred CCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCc
Confidence 3455666666555543211 11122345555555554443
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.54 E-value=2.4e-05 Score=61.72 Aligned_cols=38 Identities=24% Similarity=0.092 Sum_probs=16.7
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeeccc
Q 016845 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN 278 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 278 (381)
.+++|+.|++++|.+..... ..+..+++|+.|+++.+.
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCC
Confidence 44555555555554432111 112234555555554433
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.50 E-value=1e-05 Score=62.93 Aligned_cols=108 Identities=19% Similarity=0.113 Sum_probs=55.9
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|++.++ .+..... .....+++|++|++++|.++.... ..+..+++|+.|+++.+.++..... ....+++|+
T Consensus 28 ~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENKLQSLPNG-VFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCC
T ss_pred CCCcEEEeCCC-cccEeCH-HHhcCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCCCccccCHH-HhhCCcccC
Confidence 57888888774 2322111 112356778888887776653211 1224567777777776655431111 112456677
Q ss_pred eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 016845 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 329 (381)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 329 (381)
+|+++++. ++... ......+++|++|+++++.
T Consensus 104 ~L~l~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 104 ELALDTNQ-LKSVP-DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EEECCSSC-CSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred EEECcCCc-ceEeC-HHHhcCCcccCEEEecCCC
Confidence 77776642 32110 1112335666666666653
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.50 E-value=2e-05 Score=61.22 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=7.5
Q ss_pred cCCCCCEEEcccCCC
Q 016845 240 HCKSLETLSLDSEFI 254 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~ 254 (381)
.+++|+.|++++|.+
T Consensus 98 ~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 98 KLTQLKELALDTNQL 112 (177)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred CCcccCEEECcCCcc
Confidence 345555555555444
No 150
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.42 E-value=5e-07 Score=78.86 Aligned_cols=202 Identities=15% Similarity=0.061 Sum_probs=86.7
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHHhCCCCCEE-EeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhc
Q 016845 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSL-DLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (381)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 214 (381)
.+++|+.|+++++...+... ...+.+++++.++ .+.++.+..-. ......+++|+.|+++++. +....-.... .
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~-~- 126 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNTG-IKHLPDVHKI-H- 126 (350)
T ss_dssp TCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCCEEEEEEEC-CSSCCCCTTC-C-
T ss_pred CCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccC-chhhhhccccccccccccc-cccCCchhhc-c-
Confidence 46788888887653211100 0112245665553 44445443211 1122346777888777654 2211000000 0
Q ss_pred CcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEee-cccCCHHHHHHHHhcCCC
Q 016845 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQ-CINVTDEALVAVGNQCLS 293 (381)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~l~~l~~~~~~ 293 (381)
..++..|.+.++..+.......+......++.|++++|.+..-... ....++|+.|.+. ++.+..-.- .....+++
T Consensus 127 ~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~ 203 (350)
T 4ay9_X 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS--AFNGTQLDELNLSDNNNLEELPN-DVFHGASG 203 (350)
T ss_dssp BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT--SSTTEEEEEEECTTCTTCCCCCT-TTTTTEEC
T ss_pred cchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh--hccccchhHHhhccCCcccCCCH-HHhccCcc
Confidence 1345566665543333221111111223566777776665431111 0123456666664 333321100 11124566
Q ss_pred CCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccC
Q 016845 294 LELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEING 353 (381)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 353 (381)
|+.|+++++. ++.-. ...+.+|++|.+.++.+++. +.. +..+++|+.+++.+
T Consensus 204 L~~LdLs~N~-l~~lp----~~~~~~L~~L~~l~~~~l~~--lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 204 PVILDISRTR-IHSLP----SYGLENLKKLRARSTYNLKK--LPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CSEEECTTSC-CCCCC----SSSCTTCCEEECTTCTTCCC--CCC-TTTCCSCCEEECSC
T ss_pred cchhhcCCCC-cCccC----hhhhccchHhhhccCCCcCc--CCC-chhCcChhhCcCCC
Confidence 7777776642 32100 01245566666555543321 111 23355666666543
No 151
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.25 E-value=2.7e-05 Score=74.57 Aligned_cols=111 Identities=23% Similarity=0.155 Sum_probs=74.3
Q ss_pred HhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcC
Q 016845 238 GSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGC 317 (381)
Q Consensus 238 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 317 (381)
...++.|+.|++++|.+..- ..-...+++|+.|+|+.+.++. +..-...+++|+.|+|+++. ++ .+..-...+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l--~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l 292 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNI--SANIFKYDFLTRLYLNGNSLTE--LPAEIKNLSNLRVLDLSHNR-LT--SLPAELGSC 292 (727)
T ss_dssp --CCCCCCEEECTTSCCSCC--CGGGGGCCSCSCCBCTTSCCSC--CCGGGGGGTTCCEEECTTSC-CS--SCCSSGGGG
T ss_pred hccCCCCcEEECCCCCCCCC--ChhhcCCCCCCEEEeeCCcCcc--cChhhhCCCCCCEEeCcCCc-CC--ccChhhcCC
Confidence 35788999999999876532 1112258999999998887762 22222467899999999864 44 122223458
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCh
Q 016845 318 KKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGT 359 (381)
Q Consensus 318 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~ 359 (381)
++|++|+++++. ++. +..-+..+++|+.|+|+++ .++.
T Consensus 293 ~~L~~L~L~~N~-l~~--lp~~~~~l~~L~~L~L~~N-~l~~ 330 (727)
T 4b8c_D 293 FQLKYFYFFDNM-VTT--LPWEFGNLCNLQFLGVEGN-PLEK 330 (727)
T ss_dssp TTCSEEECCSSC-CCC--CCSSTTSCTTCCCEECTTS-CCCS
T ss_pred CCCCEEECCCCC-CCc--cChhhhcCCCccEEeCCCC-ccCC
Confidence 899999999873 542 2222456899999999996 4543
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.25 E-value=4.9e-05 Score=72.86 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=53.5
Q ss_pred HhCCCCCEEEeeccccChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhc
Q 016845 161 QKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSH 240 (381)
Q Consensus 161 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 240 (381)
..+++|+.|+|+++.+..-. ..+ ..+++|+.|+|+++. ++. +....... ++|+.|+++++ .++. +..-...
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~-~~~-~~l~~L~~L~Ls~N~-l~~--lp~~~~~l-~~L~~L~Ls~N-~l~~--lp~~~~~ 291 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNIS-ANI-FKYDFLTRLYLNGNS-LTE--LPAEIKNL-SNLRVLDLSHN-RLTS--LPAELGS 291 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCC-GGG-GGCCSCSCCBCTTSC-CSC--CCGGGGGG-TTCCEEECTTS-CCSS--CCSSGGG
T ss_pred ccCCCCcEEECCCCCCCCCC-hhh-cCCCCCCEEEeeCCc-Ccc--cChhhhCC-CCCCEEeCcCC-cCCc--cChhhcC
Confidence 35566666666666544210 111 145666666666554 221 11111222 56666666664 2221 1111235
Q ss_pred CCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCH
Q 016845 241 CKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTD 281 (381)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 281 (381)
+++|+.|++++|.++. +...+..+++|+.|+++.|.+..
T Consensus 292 l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCccCC
Confidence 6667777776665542 11113456667777776666553
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.14 E-value=0.001 Score=54.83 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=16.8
Q ss_pred cCCCCCEEEcccCCCChh-HHHHHHhcCCCCcEEEeecccCC
Q 016845 240 HCKSLETLSLDSEFIHNK-GVHAVAQGCPLLRVLKLQCINVT 280 (381)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 280 (381)
.+|+|+.|++++|.+..- ++...+..+++|+.|+++.|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 344444444444443321 11122233444555555444443
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.02 E-value=0.0014 Score=53.99 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=50.0
Q ss_pred HHhCCCCCEEEeeccccCh-hHHHHHHhhCCCCCeEeccCCCCCChH-HHHHHHhhcCcCccEEeccCCCCCC----H-H
Q 016845 160 AQKCIHLKSLDLQGCYVGD-QGLAAVGKVCNQLEDLNLRFCEGLTDT-GLVDLAHGCGKSLKSLGIAACVKIT----D-V 232 (381)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~----~-~ 232 (381)
...+|+|+.|+|++|.++. ..+......+|+|+.|+|+++. +... .+..+. . -+|++|.+.++.-.. . .
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~-~--l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIK-G--LKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGT-T--SCCSEEECTTSTTGGGCSSHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcc-c--CCcceEEccCCcCccccCcchh
Confidence 3567888888888887664 2233344567888888887665 3332 222211 1 178888887753211 1 1
Q ss_pred HHHHHHhcCCCCCEEEc
Q 016845 233 SLEAVGSHCKSLETLSL 249 (381)
Q Consensus 233 ~~~~l~~~~~~L~~L~l 249 (381)
-...+...+|+|+.|+=
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 12344567888888864
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.56 E-value=0.00041 Score=53.28 Aligned_cols=11 Identities=18% Similarity=-0.103 Sum_probs=5.4
Q ss_pred CCCCeEeccCC
Q 016845 189 NQLEDLNLRFC 199 (381)
Q Consensus 189 ~~L~~L~l~~~ 199 (381)
++|+.|+++++
T Consensus 30 ~~l~~L~L~~N 40 (170)
T 3g39_A 30 TTTQVLYLYDN 40 (170)
T ss_dssp TTCSEEECCSS
T ss_pred CCCcEEEcCCC
Confidence 44555555543
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.31 E-value=0.00072 Score=52.15 Aligned_cols=11 Identities=18% Similarity=0.018 Sum_probs=5.8
Q ss_pred CCCCeEeccCC
Q 016845 189 NQLEDLNLRFC 199 (381)
Q Consensus 189 ~~L~~L~l~~~ 199 (381)
++|+.|+++++
T Consensus 33 ~~L~~L~Ls~N 43 (174)
T 2r9u_A 33 TDKQRLWLNNN 43 (174)
T ss_dssp TTCSEEECCSS
T ss_pred CCCcEEEeCCC
Confidence 45555555544
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.29 E-value=0.00064 Score=52.20 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=26.2
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (381)
++++.|+++++ .+....... ...+++|++|++++|.+.... ...+..+++|+.|+++.+.+
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGV-FDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEcCCC-cCCccChhh-hcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCcc
Confidence 45666666553 222211111 124555666666555443211 11123345555555554444
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.24 E-value=0.00069 Score=52.24 Aligned_cols=61 Identities=20% Similarity=0.149 Sum_probs=25.5
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (381)
++|+.|+++++ .+...... ....+++|+.|++++|.+.... ...+..+++|+.|+++.+.+
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPG-VFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEeCCC-CccccCHH-HhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCcc
Confidence 45666666553 22211111 1124555555555555443211 01122345555555544443
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.43 E-value=0.00052 Score=60.74 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=37.6
Q ss_pred hcCCCCcEEEeecccCCHHH----HHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCC-CCCCHHHHHH
Q 016845 264 QGCPLLRVLKLQCINVTDEA----LVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDC-YFLSDMGLEA 338 (381)
Q Consensus 264 ~~~~~L~~L~l~~~~~~~~~----l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~i~~~~l~~ 338 (381)
.+|++|+.+.+..+...... -......|++|+.+.+... ++.-+- ....+|++|+.+.|... ..+...
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~-~aF~~c~~L~~l~lp~~l~~I~~~---- 340 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQ-GLLGGNRKVTQLTIPANVTQINFS---- 340 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECT-TTTTTCCSCCEEEECTTCCEECTT----
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhh-hhhcCCCCccEEEECccccEEcHH----
Confidence 45667777776543321000 0011124666777766531 211111 11234677777777542 111111
Q ss_pred HHhcCCCCCEEeccCC
Q 016845 339 IATGCKELTHLEINGC 354 (381)
Q Consensus 339 l~~~~~~L~~L~l~~c 354 (381)
...+| +|+.+.+.+.
T Consensus 341 aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGT 355 (401)
T ss_dssp SSSSS-CCCEEEECCS
T ss_pred hCCCC-CCCEEEEcCC
Confidence 12346 7777777653
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.37 E-value=0.00065 Score=60.07 Aligned_cols=208 Identities=14% Similarity=0.203 Sum_probs=109.1
Q ss_pred CccEEecCCC-CCCChHHHHHHHHhCCCCCEEEeeccc--cChhHHHHHHhhCCCCCeEeccCCCCCChHHHHHHHhhcC
Q 016845 139 KLEKLSLIWC-SNISSLGLMSLAQKCIHLKSLDLQGCY--VGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (381)
Q Consensus 139 ~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (381)
+|+.+.+... ..+....+. + .+|+.+.+...- +.... ...|++|+.+.+..+. +..-+-..+. +
T Consensus 136 ~L~~i~l~~~i~~I~~~aF~----~-~~L~~i~lp~~l~~I~~~a----F~~c~~L~~l~l~~n~-l~~I~~~aF~--~- 202 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDMAFF----N-STVQEIVFPSTLEQLKEDI----FYYCYNLKKADLSKTK-ITKLPASTFV--Y- 202 (401)
T ss_dssp CCSEEECCTTCCEECTTTTT----T-CCCCEEECCTTCCEECSST----TTTCTTCCEEECTTSC-CSEECTTTTT--T-
T ss_pred CccEEEeCCCccEECHHhcC----C-CCceEEEeCCCccEehHHH----hhCcccCCeeecCCCc-ceEechhhEe--e-
Confidence 5777776542 112222111 2 358888776521 22222 2457888888887532 2221111111 2
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccC--CCChhHHHHHHhcCCCCcEEEeecc--cCCHHHHHHHHhcC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSE--FIHNKGVHAVAQGCPLLRVLKLQCI--NVTDEALVAVGNQC 291 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~ 291 (381)
.+|+.+.+... +...+-.++ ..|++|+.+.+..+ .+.... +.. .+|+.+.+..+ .+.... ...|
T Consensus 203 ~~L~~l~lp~~--l~~I~~~aF-~~~~~L~~l~l~~~l~~I~~~a----F~~-~~L~~i~lp~~i~~I~~~a----F~~c 270 (401)
T 4fdw_A 203 AGIEEVLLPVT--LKEIGSQAF-LKTSQLKTIEIPENVSTIGQEA----FRE-SGITTVKLPNGVTNIASRA----FYYC 270 (401)
T ss_dssp CCCSEEECCTT--CCEECTTTT-TTCTTCCCEECCTTCCEECTTT----TTT-CCCSEEEEETTCCEECTTT----TTTC
T ss_pred cccCEEEeCCc--hheehhhHh-hCCCCCCEEecCCCccCccccc----ccc-CCccEEEeCCCccEEChhH----hhCC
Confidence 57888887642 222111122 47888999988653 222222 122 57899988422 122221 2368
Q ss_pred CCCCeEeccCCCCCCHH---HHHHHHhcCCCCCEEeccCC-CCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHh
Q 016845 292 LSLELLALYSFQQFTDK---GLHAVGKGCKKLKNLTLSDC-YFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGK 367 (381)
Q Consensus 292 ~~L~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~-~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~ 367 (381)
++|+.+.+.+.....+. .-.....+|++|+.+.+.+. ..+.+. ...+|++|+.+.+.. +++.-+-.++ .
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~----aF~~c~~L~~l~lp~--~l~~I~~~aF-~ 343 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQG----LLGGNRKVTQLTIPA--NVTQINFSAF-N 343 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTT----TTTTCCSCCEEEECT--TCCEECTTSS-S
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhh----hhcCCCCccEEEECc--cccEEcHHhC-C
Confidence 89999998764321000 00112346899999999752 122222 235689999999964 2333222222 3
Q ss_pred cCCccceeEccc
Q 016845 368 FCRYASFCRLNL 379 (381)
Q Consensus 368 ~~~~L~~l~l~~ 379 (381)
.| +|+.+.+.-
T Consensus 344 ~~-~L~~l~l~~ 354 (401)
T 4fdw_A 344 NT-GIKEVKVEG 354 (401)
T ss_dssp SS-CCCEEEECC
T ss_pred CC-CCCEEEEcC
Confidence 67 888887753
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=93.94 E-value=0.0096 Score=51.46 Aligned_cols=89 Identities=21% Similarity=0.188 Sum_probs=43.2
Q ss_pred hhCCCCCeEeccCCCCCChHHHHHHHhhcCcCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhc
Q 016845 186 KVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQG 265 (381)
Q Consensus 186 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 265 (381)
..+++|+.|+|++...+....-.. +.. .++|+.|+++++ .+....... ...+++|+.|+|++|.+..... ..+..
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~-~~~-l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~-~~~~~ 102 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRD-LRG-LGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSFNALESLSW-KTVQG 102 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGG-SCS-CCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCSSCCSCCCS-TTTCS
T ss_pred CCCCCeeEEEccCCCCCCCcChhH-hcc-ccCCCEEECCCC-ccceeCHHH-hcCCcCCCEEeCCCCccceeCH-HHccc
Confidence 345678888887522233211101 111 257777777764 333322111 2356777777777766543211 11122
Q ss_pred CCCCcEEEeecccCC
Q 016845 266 CPLLRVLKLQCINVT 280 (381)
Q Consensus 266 ~~~L~~L~l~~~~~~ 280 (381)
++ |+.|.+..+.+.
T Consensus 103 ~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 103 LS-LQELVLSGNPLH 116 (347)
T ss_dssp CC-CCEEECCSSCCC
T ss_pred CC-ceEEEeeCCCcc
Confidence 22 677777655543
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=93.58 E-value=0.012 Score=50.75 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=45.4
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (381)
++|+.|++++...+.......+ ..+++|+.|++++|.+.... ...+..+++|+.|+|+.|.+..-.. ...... .|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~-~L~ 106 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESLSW-KTVQGL-SLQ 106 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCCCS-TTTCSC-CCC
T ss_pred CCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccceeCH-HHcccC-Cce
Confidence 4678888875233333221122 36777888888777665422 1223457778888887666643111 111112 277
Q ss_pred eEeccCCC
Q 016845 296 LLALYSFQ 303 (381)
Q Consensus 296 ~L~l~~~~ 303 (381)
.|++.++.
T Consensus 107 ~l~l~~N~ 114 (347)
T 2ifg_A 107 ELVLSGNP 114 (347)
T ss_dssp EEECCSSC
T ss_pred EEEeeCCC
Confidence 77776643
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.16 E-value=0.0068 Score=53.47 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=16.1
Q ss_pred cCCCCCEEeccCC-CCCCHHHHHHHHhcCCCCCEEeccC
Q 016845 316 GCKKLKNLTLSDC-YFLSDMGLEAIATGCKELTHLEING 353 (381)
Q Consensus 316 ~~~~L~~L~l~~~-~~i~~~~l~~l~~~~~~L~~L~l~~ 353 (381)
+|.+|+.+.+... ..+.+.+ ..+|++|+.+.+..
T Consensus 341 ~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 341 GCTSLSNINFPLSLRKIGANA----FQGCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEECCCTTCCEECTTT----BTTCTTCCEEEEEG
T ss_pred CCCCCCEEEECccccEehHHH----hhCCCCCCEEEECC
Confidence 3566666666432 1122211 24466666666643
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=80.51 E-value=1.9 Score=37.63 Aligned_cols=119 Identities=15% Similarity=0.300 Sum_probs=62.3
Q ss_pred hcCCCCCEEEcccCC--CChhHHHHHHhcCCCCcEEEeec--ccCCHHHHHHHHhcCCCCCeEeccCC-CCCCHHHHHHH
Q 016845 239 SHCKSLETLSLDSEF--IHNKGVHAVAQGCPLLRVLKLQC--INVTDEALVAVGNQCLSLELLALYSF-QQFTDKGLHAV 313 (381)
Q Consensus 239 ~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l 313 (381)
..|..|+.+.+.... +... .+..+++|+.+.+.. ..+.+.. ...|++|+.+.+... ..+.+. .
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~----a 329 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEGITQILDD----A 329 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTT----T
T ss_pred eecccccEEecccccceecCc----ccccccccccccCCCcccccCcee----ecCCCCcCEEEeCCcccEehHh----H
Confidence 356777777775421 2211 234577788887742 1222221 125788888888542 112222 2
Q ss_pred HhcCCCCCEEeccCC-CCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCccceeEcc
Q 016845 314 GKGCKKLKNLTLSDC-YFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRYASFCRLN 378 (381)
Q Consensus 314 ~~~~~~L~~L~l~~~-~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~L~~l~l~ 378 (381)
..+|.+|+.+.|... ..+.+.+ ..+|++|+.+.+.+. ...... ...|.+|+.+.+.
T Consensus 330 F~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~~----~~~~~~-~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 330 FAGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYSGS----RSQWNA-ISTDSGLQNLPVA 386 (394)
T ss_dssp TTTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESSC----HHHHHT-CBCCCCC------
T ss_pred hhCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEECCc----eeehhh-hhccCCCCEEEeC
Confidence 245888888888653 3344333 356888998888763 111222 3467788877654
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=75.39 E-value=1.1 Score=39.14 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=60.6
Q ss_pred HhcCCCCcEEEeeccc--CCHHHHHHHHhcCCCCCeEeccCCC-CCCHHHHHHHHhcCCCCCEEeccCC-CCCCHHHHHH
Q 016845 263 AQGCPLLRVLKLQCIN--VTDEALVAVGNQCLSLELLALYSFQ-QFTDKGLHAVGKGCKKLKNLTLSDC-YFLSDMGLEA 338 (381)
Q Consensus 263 ~~~~~~L~~L~l~~~~--~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~-~~i~~~~l~~ 338 (381)
+..|.+|+.+.+.... +.... ...|+.|+.+.+...- .+.+. ...+|.+|+.+.|... ..+.+.+
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~a----F~~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~a--- 329 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGA----FMNCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEGITQILDDA--- 329 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTT---
T ss_pred eeecccccEEecccccceecCcc----cccccccccccCCCcccccCce----eecCCCCcCEEEeCCcccEehHhH---
Confidence 3457788888884221 22211 1257889988885421 12221 2346899999999753 2233332
Q ss_pred HHhcCCCCCEEeccC-CCCCChHHHHHHHhcCCccceeEcc
Q 016845 339 IATGCKELTHLEING-CHNIGTMGLESIGKFCRYASFCRLN 378 (381)
Q Consensus 339 l~~~~~~L~~L~l~~-c~~~~~~~~~~l~~~~~~L~~l~l~ 378 (381)
..+|.+|+.+.+.. ...+...+ -.+|++|+.+.+.
T Consensus 330 -F~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~ 365 (394)
T 4gt6_A 330 -FAGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYS 365 (394)
T ss_dssp -TTTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEES
T ss_pred -hhCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEEC
Confidence 35799999999964 22333333 3489999998775
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=61.43 E-value=1.6 Score=38.11 Aligned_cols=141 Identities=18% Similarity=0.260 Sum_probs=81.1
Q ss_pred cCccEEeccCCCCCCHHHHHHHHhcCCCCCEEEcccCC--CChhHHHHHHhcCCCCcEEEeecccCCHHHHHHHHhcCCC
Q 016845 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF--IHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLS 293 (381)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 293 (381)
..|+.+.+.... ...+- .....+..|+.+.+..+. +... .+..++.++.+......+.+.. ...|.+
T Consensus 230 ~~l~~i~ip~~~--~~i~~-~~f~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~~~~i~~~~----F~~~~~ 298 (394)
T 4fs7_A 230 TGVKNIIIPDSF--TELGK-SVFYGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYGSVIVPEKT----FYGCSS 298 (394)
T ss_dssp CCCCEEEECTTC--CEECS-STTTTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEECSSEECTTT----TTTCTT
T ss_pred CCCceEEECCCc--eeccc-ccccccccceeEEcCCCcceeecc----ccccccccceeccCceeecccc----cccccc
Confidence 467777665421 11110 112467889998886532 2221 2345788888887654444322 235788
Q ss_pred CCeEeccCCC-CCCHHHHHHHHhcCCCCCEEeccCC-CCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHhcCCc
Q 016845 294 LELLALYSFQ-QFTDKGLHAVGKGCKKLKNLTLSDC-YFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRY 371 (381)
Q Consensus 294 L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~-~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~ 371 (381)
|+.+.+...- .+.+. ...+|.+|+.+.+... ..+.+.+ ..+|.+|+.+.+... ++.-+-.+ -..|++
T Consensus 299 L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~~--l~~I~~~a-F~~C~~ 367 (394)
T 4fs7_A 299 LTEVKLLDSVKFIGEE----AFESCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPLS--LRKIGANA-FQGCIN 367 (394)
T ss_dssp CCEEEECTTCCEECTT----TTTTCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCTT--CCEECTTT-BTTCTT
T ss_pred ccccccccccceechh----hhcCCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECcc--ccEehHHH-hhCCCC
Confidence 9999886421 12221 1345899999999653 2233322 356999999999652 33222122 347899
Q ss_pred cceeEcc
Q 016845 372 ASFCRLN 378 (381)
Q Consensus 372 L~~l~l~ 378 (381)
|+.+.+.
T Consensus 368 L~~i~lp 374 (394)
T 4fs7_A 368 LKKVELP 374 (394)
T ss_dssp CCEEEEE
T ss_pred CCEEEEC
Confidence 9998774
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=50.86 E-value=8.1 Score=27.44 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=17.0
Q ss_pred CCCEEEcccCCCChhHHHHHHhcCCCCcEEEeecccC
Q 016845 243 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (381)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (381)
+|+.|+|++|.++.-.. ..+..+++|+.|+|+.|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCe
Confidence 46666666555433211 1223455566666654433
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=49.94 E-value=3.3 Score=35.80 Aligned_cols=10 Identities=20% Similarity=0.747 Sum_probs=4.7
Q ss_pred CCCCCEEecc
Q 016845 317 CKKLKNLTLS 326 (381)
Q Consensus 317 ~~~L~~L~l~ 326 (381)
|++|+.+.+.
T Consensus 285 c~~L~~i~l~ 294 (379)
T 4h09_A 285 CSNLTKVVMD 294 (379)
T ss_dssp CTTCCEEEEC
T ss_pred cccccccccc
Confidence 4444444443
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=47.97 E-value=8.2 Score=27.43 Aligned_cols=34 Identities=15% Similarity=0.048 Sum_probs=13.9
Q ss_pred CCCEEEeeccccChhHHHHHHhhCCCCCeEeccCC
Q 016845 165 HLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (381)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 199 (381)
+|+.|+|++|.++.-. ......+++|+.|.|.++
T Consensus 32 ~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALP-PGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccC-hhhhhhccccCEEEecCC
Confidence 3555555555433211 111223445555555443
Done!