BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016846
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 82.0 bits (201), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/50 (66%), Positives = 35/50 (70%)
Query: 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124
DG+ECAVCL E E R LP+C H FH ECVD WL SHSTCPLCR V
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 62 LPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
LP +RF + C VC+ FE ++LR+LP C H FH +CVD WL ++ TCP+CR
Sbjct: 9 LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67
Query: 122 YRVDP 126
P
Sbjct: 68 ADSGP 72
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124
CAVCL F+P + L + P CKHAFH +C+ WL+ CPLC V
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127
+C +CL+ E E +R LP C H FH CVD WL ++ CP+CR ++ +
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
GLEC VC + E +R LP C H FH C+ WL+ H +CP+CR
Sbjct: 15 GLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCR 59
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP 126
C +C + + +V LP C H FH CV WL TCP+CR P
Sbjct: 43 CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125
C +CL +P+ LP C HAF C+ W+ + TCPLC+ V+
Sbjct: 8 CPICLE--DPSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 68 GALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124
G ++ D EC +C+ +LP C H+F +C+D W D H CP+CR ++
Sbjct: 7 GRVKQLTDEEECCICMD----GRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 36.6 bits (83), Expect = 0.021, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI 129
D L C +C FE + ++P+C H + C+ +L + CP C V D+
Sbjct: 21 DLLRCGIC---FEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDL 72
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 36.2 bits (82), Expect = 0.031, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 98 CKHAFHVECVDTWLDSHSTCPL 119
C HAFH C+ WL + CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 36.2 bits (82), Expect = 0.031, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 98 CKHAFHVECVDTWLDSHSTCPL 119
C HAFH C+ WL + CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 36.2 bits (82), Expect = 0.034, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 98 CKHAFHVECVDTWLDSHSTCPL 119
C HAFH C+ WL + CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 36.2 bits (82), Expect = 0.034, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 98 CKHAFHVECVDTWLDSHSTCPL 119
C HAFH C+ WL + CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 35.8 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 98 CKHAFHVECVDTWLDSHSTCPL 119
C HAFH C+ WL + CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 35.8 bits (81), Expect = 0.046, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 98 CKHAFHVECVDTWLDSHSTCPL 119
C HAFH C+ WL + CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 35.4 bits (80), Expect = 0.055, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
C C + + + + +C H+FH C+ W+ ++ CPLC+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 35.4 bits (80), Expect = 0.058, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 98 CKHAFHVECVDTWLDSHSTCPL 119
C HAFH C+ WL + CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
++ L+C +C F L C H+F C++ W+ CP+CR
Sbjct: 51 ENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICR 94
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
++ L+C +C F E + L C H+F C++ W+ CP+CR
Sbjct: 62 ENELQCIICSEYF--IEAVTL--NCAHSFCSYCINEWMKRKIECPICR 105
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
++ L+C +C F E + L C H+F C++ W+ CP+CR
Sbjct: 51 ENELQCIICSEYF--IEAVTL--NCAHSFCSYCINEWMKRKIECPICR 94
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 72 GHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHST-----CPLCR 121
GH C +C R +P + L + +C AFH+ C+D L S + CP CR
Sbjct: 1 GHMRVCACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 54
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRY 122
C +CL + V+ + C H H C + L CPLC +
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMH 51
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 32.0 bits (71), Expect = 0.61, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECV-----DTWLDS-HSTCPLCRYRVDPE 127
K+ + C +CL T+ L L C H+F C+ + LD S+CP+CR PE
Sbjct: 17 KEEVTCPICLELL--TQPLSL--DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72
Query: 128 DI 129
+I
Sbjct: 73 NI 74
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 31.6 bits (70), Expect = 0.77, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 77 LECAVCLTRF-EPTEVLRLL--PKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125
+ C +C+ + E + RL+ +C H F +C+ L + +TCP CR +++
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHST-----CPLCR 121
C +C R +P + L + +C AFH+ C+D L S + CP CR
Sbjct: 26 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 72
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHST-----CPLCR 121
C +C R +P + L + +C AFH+ C+D L S + CP CR
Sbjct: 29 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 77 LECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEK 135
L C +C F + T ++ +C H+F C+ +L++ CP+C +V LL+
Sbjct: 12 LMCVLCGGYFIDATTII----ECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRS 67
Query: 136 N 136
+
Sbjct: 68 D 68
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHST-----CPLCR 121
C +C R +P + L + +C AFH+ C+D L S + CP CR
Sbjct: 21 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 67
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHST-----CPLCR 121
C +C R +P + L + +C AFH+ C+D L S + CP CR
Sbjct: 21 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 67
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 77 LECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEK 135
L C +C F + T ++ +C H+F C+ +L++ CP+C +V LL+
Sbjct: 16 LMCVLCGGYFIDATTII----ECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRS 71
Query: 136 N 136
+
Sbjct: 72 D 72
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHST-----CPLCR 121
C +C R +P + L + +C AFH+ C+D L S + CP CR
Sbjct: 23 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 69
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHST-----CPLCR 121
C +C R +P + L + +C AFH+ C+D L S + CP CR
Sbjct: 193 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 239
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 77 LECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEK 135
L C +C F + T ++ +C H+F C+ +L++ CP+C +V LL+
Sbjct: 16 LMCVLCGGYFIDATTII----ECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRS 71
Query: 136 N 136
+
Sbjct: 72 D 72
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHST-----CPLCR 121
C +C R +P + L + +C AFH+ C+D L S + CP CR
Sbjct: 177 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 77 LECAVCLTRF-EPTEVLRLL--PKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125
+ C +C+ + E + RL+ +C H F +C+ L + +TCP CR +++
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 68 GALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHST---CPLC 120
G L ++ LEC +C+ F ++ L C H +C++ L S CP C
Sbjct: 7 GNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 77 LECAVCLTRF-EPTEVLRLL--PKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125
+ C +C+ + E + RL+ +C H F +C+ L + +TCP CR +++
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 77 LECAVCLTRF-EPTEVLRLL--PKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125
+ C +C+ + E + RL+ +C H F +C+ L + +TCP CR +++
Sbjct: 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 77 LECAVCLTRF-EPTEVLRLL--PKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125
+ C +C+ + E + RL+ +C H F +C+ L + +TCP CR +++
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>pdb|2PQY|A Chain A, E. Coli Rnase 1 (in Vitro Refolded With Dsba Only)
pdb|2PQX|A Chain A, E. Coli Rnase 1 (In Vivo Folded)
pdb|2EA1|A Chain A, Crystal Structure Of Ribonuclease I From Escherichia Coli
Complexed With Guanylyl-2(Prime),5(Prime)-Guanosine
pdb|2Z70|A Chain A, E.Coli Rnase 1 In Complex With D(Cgcgatcgcg)
Length = 245
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 162 RHSSAGEFGSCSQNPTSSRRSLDGAFSKK--REQAESVAVGCFDRP 205
+ S AG+F + + T SRR D AF+K +E ++V + C P
Sbjct: 156 KESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKLTCQGNP 201
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLC 120
C +CL + V+ + C H H C + L CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 28.5 bits (62), Expect = 7.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-----SHSTCPLCR 121
C VC + EP L L +C A+H+ C++ LD + CP C+
Sbjct: 29 CRVCGGKHEPNMQL-LCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,392,845
Number of Sequences: 62578
Number of extensions: 331582
Number of successful extensions: 607
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 47
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)