Query 016846
Match_columns 381
No_of_seqs 347 out of 2084
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:20:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.6 5.6E-16 1.2E-20 154.1 9.6 77 50-127 203-280 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 1E-13 2.2E-18 98.8 1.8 43 78-121 2-44 (44)
3 PHA02929 N1R/p28-like protein; 99.2 4.7E-12 1E-16 121.0 4.3 75 51-125 147-227 (238)
4 COG5243 HRD1 HRD ubiquitin lig 99.2 1E-11 2.2E-16 123.4 6.4 71 54-127 267-347 (491)
5 KOG0823 Predicted E3 ubiquitin 99.2 8.1E-12 1.7E-16 117.6 4.9 63 73-139 44-109 (230)
6 PF12678 zf-rbx1: RING-H2 zinc 99.1 5.1E-11 1.1E-15 94.3 3.8 45 76-121 19-73 (73)
7 COG5540 RING-finger-containing 99.1 2.8E-11 6E-16 117.7 2.7 53 73-126 320-373 (374)
8 PLN03208 E3 ubiquitin-protein 99.1 1.2E-10 2.7E-15 107.7 6.7 60 74-137 16-91 (193)
9 KOG0317 Predicted E3 ubiquitin 99.0 2.2E-10 4.9E-15 110.9 5.6 52 76-131 239-290 (293)
10 PF13920 zf-C3HC4_3: Zinc fing 98.8 3.3E-09 7.1E-14 77.5 3.1 46 76-125 2-48 (50)
11 cd00162 RING RING-finger (Real 98.8 3.1E-09 6.8E-14 73.4 2.8 44 78-124 1-45 (45)
12 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.5E-09 7.6E-14 73.6 2.9 39 79-120 1-39 (39)
13 KOG0320 Predicted E3 ubiquitin 98.8 2.7E-09 5.9E-14 97.2 1.8 55 75-131 130-184 (187)
14 smart00504 Ubox Modified RING 98.7 1.1E-08 2.3E-13 77.3 3.7 51 77-131 2-52 (63)
15 PHA02926 zinc finger-like prot 98.7 4.7E-09 1E-13 98.8 1.4 53 73-125 167-230 (242)
16 PF12861 zf-Apc11: Anaphase-pr 98.7 1.1E-08 2.4E-13 83.2 2.4 51 76-126 21-83 (85)
17 KOG0802 E3 ubiquitin ligase [P 98.6 7.7E-09 1.7E-13 109.5 1.1 52 75-127 290-343 (543)
18 PF15227 zf-C3HC4_4: zinc fing 98.6 2.1E-08 4.5E-13 71.3 2.5 38 79-120 1-42 (42)
19 PF00097 zf-C3HC4: Zinc finger 98.6 3.4E-08 7.5E-13 68.8 2.4 39 79-120 1-41 (41)
20 TIGR00599 rad18 DNA repair pro 98.6 3.3E-08 7.3E-13 100.8 3.3 55 71-129 21-75 (397)
21 PF14634 zf-RING_5: zinc-RING 98.5 4E-08 8.7E-13 70.2 2.5 44 78-122 1-44 (44)
22 smart00184 RING Ring finger. E 98.5 8.1E-08 1.8E-12 64.0 2.2 38 79-120 1-39 (39)
23 COG5574 PEX10 RING-finger-cont 98.4 7.3E-08 1.6E-12 92.7 1.6 51 75-129 214-266 (271)
24 KOG0828 Predicted E3 ubiquitin 98.3 4.2E-07 9.2E-12 93.6 4.3 50 76-126 571-635 (636)
25 KOG2164 Predicted E3 ubiquitin 98.3 3.4E-07 7.4E-12 94.9 2.8 58 76-137 186-248 (513)
26 PF04564 U-box: U-box domain; 98.2 5.5E-07 1.2E-11 71.1 2.4 54 75-132 3-57 (73)
27 KOG0287 Postreplication repair 98.2 2.7E-07 5.8E-12 91.5 0.3 58 69-130 16-73 (442)
28 KOG1734 Predicted RING-contain 98.2 3.7E-07 8.1E-12 88.1 0.6 55 74-129 222-285 (328)
29 COG5194 APC11 Component of SCF 98.1 1.2E-06 2.6E-11 70.4 1.9 29 97-125 53-81 (88)
30 KOG2177 Predicted E3 ubiquitin 98.1 1.1E-06 2.4E-11 81.4 1.3 45 74-122 11-55 (386)
31 KOG2930 SCF ubiquitin ligase, 98.1 1.1E-06 2.4E-11 73.7 0.8 50 76-125 46-108 (114)
32 TIGR00570 cdk7 CDK-activating 98.0 3.1E-06 6.6E-11 83.8 3.6 54 76-130 3-59 (309)
33 COG5432 RAD18 RING-finger-cont 98.0 1.8E-06 4E-11 84.2 1.7 54 69-126 18-71 (391)
34 COG5219 Uncharacterized conser 98.0 6.9E-07 1.5E-11 97.6 -1.4 53 73-125 1466-1523(1525)
35 PF13445 zf-RING_UBOX: RING-ty 98.0 4E-06 8.6E-11 60.1 2.5 38 79-118 1-43 (43)
36 PF11793 FANCL_C: FANCL C-term 97.9 1.9E-06 4.1E-11 67.8 -0.0 50 76-125 2-66 (70)
37 KOG1493 Anaphase-promoting com 97.9 2E-06 4.4E-11 68.5 0.0 50 76-125 20-81 (84)
38 smart00744 RINGv The RING-vari 97.9 6.1E-06 1.3E-10 60.6 1.9 42 78-121 1-49 (49)
39 KOG4265 Predicted E3 ubiquitin 97.8 1E-05 2.2E-10 81.0 2.5 49 74-126 288-337 (349)
40 KOG3970 Predicted E3 ubiquitin 97.8 3.5E-05 7.5E-10 73.1 5.7 56 71-128 45-108 (299)
41 KOG0311 Predicted E3 ubiquitin 97.7 3.5E-06 7.6E-11 84.1 -2.3 51 74-127 41-92 (381)
42 KOG0978 E3 ubiquitin ligase in 97.7 9.5E-06 2.1E-10 87.6 0.2 54 75-132 642-696 (698)
43 PF14835 zf-RING_6: zf-RING of 97.7 1.8E-05 3.8E-10 61.4 1.4 51 77-132 8-58 (65)
44 KOG0804 Cytoplasmic Zn-finger 97.7 1.7E-05 3.8E-10 81.3 1.7 48 75-125 174-222 (493)
45 KOG0827 Predicted E3 ubiquitin 97.6 1.8E-05 4E-10 79.8 1.3 47 78-124 6-55 (465)
46 KOG4172 Predicted E3 ubiquitin 97.6 1.2E-05 2.6E-10 60.4 -0.6 45 77-125 8-54 (62)
47 KOG0825 PHD Zn-finger protein 97.5 2.1E-05 4.5E-10 85.0 -0.4 53 77-130 124-176 (1134)
48 KOG0824 Predicted E3 ubiquitin 97.4 5E-05 1.1E-09 74.6 1.6 48 77-128 8-56 (324)
49 KOG4445 Uncharacterized conser 97.4 4.8E-05 1E-09 74.7 0.3 53 74-127 113-188 (368)
50 KOG1039 Predicted E3 ubiquitin 97.4 8.2E-05 1.8E-09 75.0 2.0 51 75-125 160-221 (344)
51 KOG1645 RING-finger-containing 97.3 4.6E-05 9.9E-10 77.5 -0.0 52 75-126 3-57 (463)
52 KOG1785 Tyrosine kinase negati 97.2 0.00017 3.7E-09 73.3 2.8 47 78-128 371-419 (563)
53 KOG4159 Predicted E3 ubiquitin 97.1 0.00022 4.8E-09 73.2 2.4 49 74-126 82-130 (398)
54 KOG0297 TNF receptor-associate 96.8 0.00064 1.4E-08 69.8 2.4 54 74-130 19-72 (391)
55 PF11789 zf-Nse: Zinc-finger o 96.7 0.00082 1.8E-08 51.0 1.7 42 75-119 10-53 (57)
56 KOG3039 Uncharacterized conser 96.6 0.0019 4.1E-08 62.3 3.9 60 76-135 221-280 (303)
57 KOG2879 Predicted E3 ubiquitin 96.5 0.002 4.4E-08 62.8 3.1 49 74-125 237-287 (298)
58 PF04641 Rtf2: Rtf2 RING-finge 96.4 0.0033 7.2E-08 61.0 4.3 63 73-136 110-172 (260)
59 KOG0801 Predicted E3 ubiquitin 96.4 0.0013 2.9E-08 59.7 1.3 41 63-104 164-204 (205)
60 COG5152 Uncharacterized conser 96.3 0.0014 3.1E-08 61.3 1.2 48 73-124 193-240 (259)
61 KOG1941 Acetylcholine receptor 96.2 0.0013 2.8E-08 66.9 0.0 46 76-122 365-413 (518)
62 KOG0826 Predicted E3 ubiquitin 96.1 0.0048 1E-07 61.6 3.5 52 75-129 299-350 (357)
63 KOG1428 Inhibitor of type V ad 96.1 0.0031 6.8E-08 72.3 2.2 67 59-126 3468-3545(3738)
64 KOG2660 Locus-specific chromos 95.9 0.0017 3.7E-08 64.7 -0.4 50 75-127 14-63 (331)
65 PF05883 Baculo_RING: Baculovi 95.9 0.0023 5E-08 56.5 0.4 35 76-111 26-66 (134)
66 KOG1002 Nucleotide excision re 95.9 0.0027 5.8E-08 66.8 0.7 51 73-127 533-588 (791)
67 KOG4692 Predicted E3 ubiquitin 95.8 0.0061 1.3E-07 61.4 3.0 49 74-126 420-468 (489)
68 PF14570 zf-RING_4: RING/Ubox 95.6 0.0089 1.9E-07 44.0 2.3 45 79-124 1-47 (48)
69 PF10367 Vps39_2: Vacuolar sor 95.5 0.0069 1.5E-07 49.8 1.7 31 76-108 78-108 (109)
70 PF12906 RINGv: RING-variant d 95.5 0.0091 2E-07 43.4 2.0 40 79-120 1-47 (47)
71 KOG1813 Predicted E3 ubiquitin 95.4 0.0064 1.4E-07 59.9 1.2 44 77-124 242-285 (313)
72 KOG1952 Transcription factor N 95.3 0.0075 1.6E-07 66.4 1.7 50 74-123 189-245 (950)
73 PHA02862 5L protein; Provision 95.2 0.0081 1.8E-07 53.7 1.3 47 77-128 3-56 (156)
74 KOG1571 Predicted E3 ubiquitin 94.9 0.017 3.7E-07 58.3 2.7 43 76-125 305-347 (355)
75 KOG4275 Predicted E3 ubiquitin 94.8 0.0073 1.6E-07 59.5 -0.1 42 76-125 300-342 (350)
76 KOG1814 Predicted E3 ubiquitin 94.8 0.011 2.3E-07 60.7 1.0 47 75-122 183-237 (445)
77 PHA03096 p28-like protein; Pro 94.7 0.012 2.5E-07 58.3 1.0 46 77-122 179-231 (284)
78 COG5222 Uncharacterized conser 94.7 0.015 3.2E-07 57.7 1.6 50 77-129 275-326 (427)
79 COG5175 MOT2 Transcriptional r 94.7 0.016 3.4E-07 58.3 1.8 56 74-130 12-69 (480)
80 COG5236 Uncharacterized conser 94.5 0.034 7.4E-07 56.1 3.5 64 58-125 42-108 (493)
81 KOG4739 Uncharacterized protei 94.5 0.013 2.8E-07 56.3 0.5 48 78-129 5-52 (233)
82 PHA02825 LAP/PHD finger-like p 94.4 0.025 5.5E-07 51.3 2.2 49 74-127 6-61 (162)
83 PF02439 Adeno_E3_CR2: Adenovi 93.9 0.066 1.4E-06 37.5 3.0 29 1-29 6-34 (38)
84 KOG4185 Predicted E3 ubiquitin 93.3 0.049 1.1E-06 53.3 2.2 47 77-124 4-54 (296)
85 PF14447 Prok-RING_4: Prokaryo 93.2 0.058 1.3E-06 40.7 1.9 45 78-128 9-53 (55)
86 KOG1001 Helicase-like transcri 93.1 0.023 5E-07 62.3 -0.5 49 77-130 455-505 (674)
87 KOG3268 Predicted E3 ubiquitin 92.8 0.057 1.2E-06 50.0 1.8 29 97-125 189-228 (234)
88 KOG1940 Zn-finger protein [Gen 92.4 0.064 1.4E-06 52.8 1.6 45 77-122 159-204 (276)
89 PF08746 zf-RING-like: RING-li 92.4 0.084 1.8E-06 37.7 1.8 41 79-120 1-43 (43)
90 PF07800 DUF1644: Protein of u 92.1 0.11 2.5E-06 47.1 2.6 52 76-130 2-96 (162)
91 KOG2114 Vacuolar assembly/sort 91.8 0.067 1.5E-06 59.3 1.1 42 77-124 841-882 (933)
92 PF10272 Tmpp129: Putative tra 91.6 0.18 3.9E-06 51.5 3.9 32 98-129 311-355 (358)
93 KOG0827 Predicted E3 ubiquitin 91.2 0.016 3.5E-07 59.1 -4.1 51 77-128 197-248 (465)
94 PF14446 Prok-RING_1: Prokaryo 90.9 0.22 4.7E-06 37.6 2.7 40 76-119 5-44 (54)
95 KOG2932 E3 ubiquitin ligase in 90.8 0.1 2.2E-06 52.1 1.1 42 78-124 92-133 (389)
96 KOG1100 Predicted E3 ubiquitin 90.1 0.16 3.6E-06 48.0 1.8 39 79-125 161-200 (207)
97 KOG0298 DEAD box-containing he 89.4 0.099 2.1E-06 60.3 -0.3 45 76-123 1153-1197(1394)
98 KOG0309 Conserved WD40 repeat- 88.7 0.21 4.6E-06 54.9 1.6 40 78-119 1030-1069(1081)
99 KOG3053 Uncharacterized conser 88.5 0.15 3.3E-06 49.6 0.3 51 73-124 17-81 (293)
100 KOG3002 Zn finger protein [Gen 86.7 0.44 9.5E-06 47.6 2.4 45 73-125 45-91 (299)
101 PF12273 RCR: Chitin synthesis 86.1 0.74 1.6E-05 40.0 3.2 20 4-23 4-23 (130)
102 COG5183 SSM4 Protein involved 86.0 0.41 8.8E-06 53.2 1.8 55 74-130 10-71 (1175)
103 KOG2034 Vacuolar sorting prote 85.7 0.31 6.7E-06 54.5 0.8 33 76-110 817-849 (911)
104 KOG3800 Predicted E3 ubiquitin 85.3 0.54 1.2E-05 46.6 2.1 51 78-128 2-54 (300)
105 COG5220 TFB3 Cdk activating ki 84.8 0.29 6.3E-06 47.4 0.1 49 76-124 10-63 (314)
106 KOG1609 Protein involved in mR 84.6 0.44 9.6E-06 46.3 1.3 51 76-127 78-136 (323)
107 PF05290 Baculo_IE-1: Baculovi 83.6 0.56 1.2E-05 41.6 1.3 52 75-126 79-133 (140)
108 KOG2817 Predicted E3 ubiquitin 82.8 0.87 1.9E-05 46.9 2.5 49 75-124 333-384 (394)
109 KOG0825 PHD Zn-finger protein 81.9 0.69 1.5E-05 51.3 1.5 50 76-125 96-154 (1134)
110 KOG4362 Transcriptional regula 81.2 0.41 9E-06 52.4 -0.5 48 76-127 21-71 (684)
111 KOG1812 Predicted E3 ubiquitin 81.0 0.62 1.3E-05 48.0 0.7 38 75-113 145-183 (384)
112 PF02891 zf-MIZ: MIZ/SP-RING z 80.8 0.76 1.7E-05 33.8 1.0 43 77-123 3-50 (50)
113 KOG0802 E3 ubiquitin ligase [P 80.0 1 2.2E-05 48.2 2.0 45 76-128 479-523 (543)
114 PF01102 Glycophorin_A: Glycop 79.0 1.4 3E-05 38.6 2.1 27 2-28 68-94 (122)
115 PF03854 zf-P11: P-11 zinc fin 77.1 1 2.2E-05 33.3 0.6 29 98-126 18-47 (50)
116 KOG1829 Uncharacterized conser 76.7 0.87 1.9E-05 49.2 0.3 45 73-121 508-557 (580)
117 KOG3113 Uncharacterized conser 76.6 1.7 3.7E-05 42.5 2.2 55 76-132 111-165 (293)
118 PF13901 DUF4206: Domain of un 76.4 1.8 3.9E-05 40.6 2.3 41 75-121 151-196 (202)
119 KOG3899 Uncharacterized conser 76.2 0.95 2.1E-05 45.1 0.4 32 98-129 325-369 (381)
120 KOG3161 Predicted E3 ubiquitin 75.4 0.84 1.8E-05 49.6 -0.2 42 77-121 12-53 (861)
121 PF07975 C1_4: TFIIH C1-like d 74.9 2.5 5.3E-05 31.6 2.2 43 79-121 2-50 (51)
122 KOG4367 Predicted Zn-finger pr 73.8 1.5 3.2E-05 45.9 1.1 35 75-113 3-37 (699)
123 TIGR00622 ssl1 transcription f 72.2 4.7 0.0001 34.8 3.6 45 77-121 56-110 (112)
124 KOG0269 WD40 repeat-containing 71.9 2.6 5.6E-05 46.7 2.4 44 78-123 781-826 (839)
125 PF10571 UPF0547: Uncharacteri 70.3 2 4.4E-05 27.6 0.7 23 78-102 2-24 (26)
126 KOG1812 Predicted E3 ubiquitin 66.0 3.1 6.7E-05 42.9 1.5 44 76-120 306-351 (384)
127 KOG3579 Predicted E3 ubiquitin 64.9 3.6 7.8E-05 40.9 1.6 39 75-114 267-306 (352)
128 PLN02189 cellulose synthase 64.9 6.8 0.00015 45.2 3.9 49 77-125 35-87 (1040)
129 KOG4718 Non-SMC (structural ma 64.7 3.2 7E-05 39.6 1.2 43 77-122 182-224 (235)
130 KOG2068 MOT2 transcription fac 63.0 6.4 0.00014 39.8 2.9 47 77-124 250-297 (327)
131 KOG2807 RNA polymerase II tran 61.4 6.9 0.00015 39.7 2.8 61 61-122 313-375 (378)
132 PF12273 RCR: Chitin synthesis 60.6 6 0.00013 34.3 2.1 20 8-27 4-23 (130)
133 PLN02638 cellulose synthase A 59.4 10 0.00022 44.0 4.0 49 77-125 18-70 (1079)
134 PF13719 zinc_ribbon_5: zinc-r 59.3 6.7 0.00015 27.0 1.7 26 78-103 4-36 (37)
135 PF01363 FYVE: FYVE zinc finge 59.3 6.4 0.00014 30.0 1.8 36 76-111 9-44 (69)
136 PF14569 zf-UDP: Zinc-binding 59.2 10 0.00023 30.7 3.0 51 76-126 9-63 (80)
137 smart00249 PHD PHD zinc finger 59.0 6.4 0.00014 26.6 1.6 31 78-109 1-31 (47)
138 PLN02436 cellulose synthase A 57.8 11 0.00024 43.7 4.0 49 77-125 37-89 (1094)
139 KOG3005 GIY-YIG type nuclease 56.9 5.4 0.00012 39.3 1.2 50 77-126 183-244 (276)
140 PF00628 PHD: PHD-finger; Int 55.8 9.5 0.00021 27.2 2.1 44 78-122 1-50 (51)
141 PLN02400 cellulose synthase 55.5 12 0.00025 43.5 3.7 49 77-125 37-89 (1085)
142 KOG2066 Vacuolar assembly/sort 55.1 4.5 9.8E-05 45.1 0.4 44 77-122 785-832 (846)
143 KOG1815 Predicted E3 ubiquitin 55.0 5.5 0.00012 41.7 1.0 54 74-130 68-131 (444)
144 smart00132 LIM Zinc-binding do 54.4 12 0.00025 24.5 2.2 36 79-124 2-37 (39)
145 PF13717 zinc_ribbon_4: zinc-r 53.5 11 0.00024 25.8 2.0 27 77-103 3-36 (36)
146 smart00647 IBR In Between Ring 53.3 6.8 0.00015 28.9 1.0 21 90-110 38-58 (64)
147 KOG3842 Adaptor protein Pellin 53.2 12 0.00026 37.9 3.0 52 76-128 341-417 (429)
148 PF13908 Shisa: Wnt and FGF in 50.2 16 0.00034 33.3 3.1 7 3-9 80-86 (179)
149 KOG0824 Predicted E3 ubiquitin 49.5 7.4 0.00016 39.0 0.9 51 73-126 102-152 (324)
150 PF15102 TMEM154: TMEM154 prot 48.9 11 0.00024 34.0 1.8 9 105-113 128-136 (146)
151 PF04216 FdhE: Protein involve 46.3 4.5 9.8E-05 39.8 -1.2 46 77-122 173-219 (290)
152 PF06906 DUF1272: Protein of u 45.8 23 0.0005 27.0 2.8 44 78-126 7-53 (57)
153 KOG3039 Uncharacterized conser 44.9 17 0.00037 35.7 2.5 33 76-112 43-75 (303)
154 COG5109 Uncharacterized conser 44.6 13 0.00028 37.6 1.7 47 74-121 334-383 (396)
155 PLN02195 cellulose synthase A 44.2 23 0.00049 40.8 3.7 51 77-127 7-61 (977)
156 smart00064 FYVE Protein presen 43.1 17 0.00037 27.5 1.9 36 76-111 10-45 (68)
157 PF06024 DUF912: Nucleopolyhed 42.3 15 0.00033 30.8 1.6 22 2-23 63-84 (101)
158 KOG2041 WD40 repeat protein [G 42.0 16 0.00035 40.8 2.1 46 75-124 1130-1184(1189)
159 PF04710 Pellino: Pellino; In 41.2 8.9 0.00019 39.8 0.0 50 76-126 328-402 (416)
160 cd00065 FYVE FYVE domain; Zinc 41.1 17 0.00036 26.5 1.5 34 78-111 4-37 (57)
161 PF00412 LIM: LIM domain; Int 40.5 29 0.00063 25.0 2.7 40 79-128 1-40 (58)
162 PF08114 PMP1_2: ATPase proteo 40.2 24 0.00051 25.3 2.0 26 3-28 12-37 (43)
163 PF01034 Syndecan: Syndecan do 39.5 10 0.00022 29.7 0.1 21 2-22 13-33 (64)
164 PF07191 zinc-ribbons_6: zinc- 37.6 13 0.00027 29.6 0.3 39 77-124 2-40 (70)
165 PLN02915 cellulose synthase A 36.4 28 0.00061 40.4 3.0 50 76-125 15-68 (1044)
166 PF10497 zf-4CXXC_R1: Zinc-fin 35.0 38 0.00082 28.7 2.9 25 99-123 37-70 (105)
167 PHA02650 hypothetical protein; 34.7 45 0.00098 27.2 3.1 22 6-27 54-75 (81)
168 PF07423 DUF1510: Protein of u 34.2 14 0.00031 35.4 0.2 15 7-21 18-32 (217)
169 PHA02902 putative IMV membrane 34.0 1.4E+02 0.0031 23.5 5.6 10 53-62 53-62 (70)
170 KOG2113 Predicted RNA binding 33.9 29 0.00063 35.2 2.3 44 75-124 342-386 (394)
171 PF05605 zf-Di19: Drought indu 33.2 5.5 0.00012 29.3 -2.2 40 76-124 2-41 (54)
172 PF04478 Mid2: Mid2 like cell 33.0 14 0.00031 33.6 -0.0 12 2-13 53-64 (154)
173 KOG1815 Predicted E3 ubiquitin 32.5 18 0.00038 37.9 0.5 36 78-113 228-267 (444)
174 KOG2979 Protein involved in DN 32.5 23 0.0005 34.8 1.3 42 76-120 176-219 (262)
175 PF06844 DUF1244: Protein of u 32.1 21 0.00045 28.2 0.7 11 102-112 12-22 (68)
176 PF15176 LRR19-TM: Leucine-ric 31.8 45 0.00097 28.4 2.7 22 3-24 19-40 (102)
177 PRK04023 DNA polymerase II lar 31.4 34 0.00073 39.7 2.5 47 76-128 626-677 (1121)
178 PF12877 DUF3827: Domain of un 31.2 71 0.0015 35.4 4.8 27 3-29 271-298 (684)
179 PF14311 DUF4379: Domain of un 31.2 38 0.00083 24.9 2.0 25 95-120 31-55 (55)
180 PRK11088 rrmA 23S rRNA methylt 30.7 28 0.00061 33.5 1.6 26 77-103 3-28 (272)
181 PF05454 DAG1: Dystroglycan (D 30.3 17 0.00037 36.3 0.0 25 4-28 150-174 (290)
182 PHA02844 putative transmembran 29.8 54 0.0012 26.4 2.7 19 7-25 54-72 (75)
183 PF07282 OrfB_Zn_ribbon: Putat 29.7 82 0.0018 23.8 3.8 32 76-107 28-61 (69)
184 TIGR01562 FdhE formate dehydro 29.5 21 0.00046 35.9 0.5 45 77-122 185-232 (305)
185 PF11023 DUF2614: Protein of u 29.4 40 0.00087 29.2 2.1 28 95-128 72-99 (114)
186 PF02318 FYVE_2: FYVE-type zin 28.9 44 0.00094 28.6 2.3 47 75-122 53-102 (118)
187 PF01102 Glycophorin_A: Glycop 28.6 39 0.00085 29.6 2.0 26 4-29 66-91 (122)
188 PRK09458 pspB phage shock prot 28.2 1.1E+02 0.0025 24.6 4.3 25 3-27 4-28 (75)
189 PF05393 Hum_adeno_E3A: Human 28.2 1.1E+02 0.0024 25.5 4.4 22 8-29 38-59 (94)
190 PF05151 PsbM: Photosystem II 28.0 71 0.0015 21.6 2.6 20 4-23 9-28 (31)
191 PF01485 IBR: IBR domain; Int 28.0 18 0.0004 26.4 -0.2 33 78-110 20-58 (64)
192 PF08374 Protocadherin: Protoc 26.8 74 0.0016 30.6 3.6 26 3-28 39-66 (221)
193 PF09723 Zn-ribbon_8: Zinc rib 26.7 26 0.00056 24.6 0.4 25 97-122 10-34 (42)
194 PF07010 Endomucin: Endomucin; 26.5 96 0.0021 30.2 4.3 21 4-24 194-214 (259)
195 PF06667 PspB: Phage shock pro 26.0 65 0.0014 25.9 2.6 13 5-17 6-18 (75)
196 cd00350 rubredoxin_like Rubred 26.0 50 0.0011 21.9 1.7 20 97-122 6-25 (33)
197 KOG4323 Polycomb-like PHD Zn-f 25.9 24 0.00051 37.5 0.1 50 74-123 166-224 (464)
198 PRK05978 hypothetical protein; 25.7 42 0.00091 30.4 1.7 24 99-127 42-65 (148)
199 PRK03564 formate dehydrogenase 25.7 32 0.0007 34.7 1.0 46 76-122 187-234 (309)
200 PHA03054 IMV membrane protein; 25.4 74 0.0016 25.4 2.8 16 8-23 55-70 (72)
201 PHA02819 hypothetical protein; 25.4 75 0.0016 25.3 2.8 17 8-24 53-69 (71)
202 KOG2231 Predicted E3 ubiquitin 25.1 46 0.001 37.0 2.1 46 78-127 2-54 (669)
203 PF12575 DUF3753: Protein of u 25.0 67 0.0014 25.7 2.5 11 13-23 60-70 (72)
204 PF13832 zf-HC5HC2H_2: PHD-zin 24.5 47 0.001 27.5 1.7 33 75-109 54-87 (110)
205 PF05510 Sarcoglycan_2: Sarcog 24.3 43 0.00093 34.8 1.7 26 2-27 286-311 (386)
206 smart00531 TFIIE Transcription 24.2 62 0.0014 28.6 2.5 13 115-127 124-136 (147)
207 KOG1356 Putative transcription 23.4 33 0.00073 38.8 0.7 33 77-111 230-262 (889)
208 KOG3799 Rab3 effector RIM1 and 23.4 22 0.00049 31.8 -0.5 45 72-124 61-117 (169)
209 PF07649 C1_3: C1-like domain; 23.4 56 0.0012 21.1 1.5 29 78-107 2-30 (30)
210 PF06667 PspB: Phage shock pro 23.3 1.2E+02 0.0027 24.3 3.7 24 2-25 7-30 (75)
211 PF04710 Pellino: Pellino; In 23.3 27 0.00059 36.4 0.0 45 76-124 277-338 (416)
212 PF15102 TMEM154: TMEM154 prot 23.2 40 0.00086 30.5 1.0 7 22-28 79-85 (146)
213 PF09943 DUF2175: Uncharacteri 23.1 56 0.0012 27.8 1.8 32 78-111 4-35 (101)
214 PHA03030 hypothetical protein; 22.7 72 0.0016 27.4 2.4 20 11-30 10-29 (122)
215 PHA03164 hypothetical protein; 22.5 86 0.0019 25.5 2.7 21 4-24 62-82 (88)
216 PHA02975 hypothetical protein; 22.4 94 0.002 24.7 2.8 16 8-23 51-66 (69)
217 PF04423 Rad50_zn_hook: Rad50 22.4 31 0.00068 25.3 0.2 14 115-128 21-34 (54)
218 PF08374 Protocadherin: Protoc 22.3 36 0.00079 32.7 0.6 14 4-17 47-60 (221)
219 PF15298 AJAP1_PANP_C: AJAP1/P 21.7 74 0.0016 30.2 2.5 26 5-30 104-129 (205)
220 PHA02657 hypothetical protein; 21.7 91 0.002 25.9 2.7 10 14-23 40-49 (95)
221 TIGR00686 phnA alkylphosphonat 21.6 47 0.001 28.6 1.1 9 78-86 4-12 (109)
222 PHA02849 putative transmembran 20.9 90 0.0019 25.4 2.5 16 6-21 21-36 (82)
223 PHA02681 ORF089 virion membran 20.7 3.1E+02 0.0067 22.7 5.5 19 51-69 49-67 (92)
224 KOG2071 mRNA cleavage and poly 20.6 57 0.0012 35.6 1.8 35 74-110 511-556 (579)
225 PF13908 Shisa: Wnt and FGF in 20.4 80 0.0017 28.7 2.5 7 3-9 84-90 (179)
226 KOG4185 Predicted E3 ubiquitin 20.3 18 0.00039 35.3 -1.9 48 77-124 208-266 (296)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.6e-16 Score=154.08 Aligned_cols=77 Identities=31% Similarity=0.819 Sum_probs=66.8
Q ss_pred cCCCCCHHHHhhCCceeecccCCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCC-CCCccccccCCC
Q 016846 50 KNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDPE 127 (381)
Q Consensus 50 ~~~gl~~~~i~~Lp~~~~~~~~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~-tCPlCR~~v~~~ 127 (381)
+...+.+..++.+|...|.........+.|+||||+|+.++++++|| |+|.||..||+.||.+.. .||+|+..+...
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 44578889999999999988766555579999999999999999999 999999999999998874 599999976543
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.39 E-value=1e-13 Score=98.77 Aligned_cols=43 Identities=47% Similarity=1.209 Sum_probs=40.2
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR 121 (381)
+|+||++.|..++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 7999999999999999998 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.24 E-value=4.7e-12 Score=120.95 Aligned_cols=75 Identities=27% Similarity=0.677 Sum_probs=58.0
Q ss_pred CCCCCHHHHhhCCceeecc--cCCCCCCcccccccccccCCcc----eeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846 51 NSGIDRTVIESLPIFRFGA--LRGHKDGLECAVCLTRFEPTEV----LRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124 (381)
Q Consensus 51 ~~gl~~~~i~~Lp~~~~~~--~~~~~~~~~C~ICle~~~~~~~----v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v 124 (381)
..+..+..++.+|.+.... +....++.+|+||++.+..+.. +.+++.|+|.||..||.+|+..+.+||+||.++
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 4566889999999886443 2233456799999999876531 234445999999999999999999999999987
Q ss_pred C
Q 016846 125 D 125 (381)
Q Consensus 125 ~ 125 (381)
.
T Consensus 227 ~ 227 (238)
T PHA02929 227 I 227 (238)
T ss_pred e
Confidence 4
No 4
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1e-11 Score=123.41 Aligned_cols=71 Identities=28% Similarity=0.720 Sum_probs=54.2
Q ss_pred CCHHHHhhCCceeecccCCCCCCccccccccc-ccCC---------cceeecCCCCceeChhcHHHHhcCCCCCCccccc
Q 016846 54 IDRTVIESLPIFRFGALRGHKDGLECAVCLTR-FEPT---------EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYR 123 (381)
Q Consensus 54 l~~~~i~~Lp~~~~~~~~~~~~~~~C~ICle~-~~~~---------~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~ 123 (381)
+.++.-+.+|.....++. .++..|.||+|+ |+.+ .+.+.|| |||.||.+|++.|++++++||+||.+
T Consensus 267 ~~kdl~~~~~t~t~eql~--n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 267 ATKDLNAMYPTATEEQLT--NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred HhhHHHhhcchhhhhhhc--CCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCc
Confidence 445666667776666653 344589999999 4444 2346788 99999999999999999999999999
Q ss_pred cCCC
Q 016846 124 VDPE 127 (381)
Q Consensus 124 v~~~ 127 (381)
+..+
T Consensus 344 ~ifd 347 (491)
T COG5243 344 VIFD 347 (491)
T ss_pred cccc
Confidence 6433
No 5
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=8.1e-12 Score=117.64 Aligned_cols=63 Identities=21% Similarity=0.602 Sum_probs=53.2
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC---CCCCCccccccCCCccccccccccCc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS---HSTCPLCRYRVDPEDILLSFEKNIDS 139 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~~v~~~~~~~~~~~~~~~ 139 (381)
....++|.||||.-+++ +++. |||+|||.||.+||.. .+.||+|+..|..+.+++.|......
T Consensus 44 ~~~~FdCNICLd~akdP---VvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~~ 109 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGSKK 109 (230)
T ss_pred CCCceeeeeeccccCCC---EEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCCCC
Confidence 45678999999997666 4566 9999999999999976 45699999999999999998877643
No 6
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.11 E-value=5.1e-11 Score=94.27 Aligned_cols=45 Identities=40% Similarity=0.983 Sum_probs=35.6
Q ss_pred CcccccccccccCC----------cceeecCCCCceeChhcHHHHhcCCCCCCccc
Q 016846 76 GLECAVCLTRFEPT----------EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121 (381)
Q Consensus 76 ~~~C~ICle~~~~~----------~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR 121 (381)
++.|+||++.|.++ ..+...+ |||.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34699999999433 2344455 999999999999999999999997
No 7
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.8e-11 Score=117.72 Aligned_cols=53 Identities=47% Similarity=1.148 Sum_probs=47.4
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhc-CCCCCCccccccCC
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-SHSTCPLCRYRVDP 126 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-~~~tCPlCR~~v~~ 126 (381)
.+.+.+|+|||+.|...+.++++| |.|.||..|+++|+. -+..||+||.++.+
T Consensus 320 a~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 344579999999999999999999 999999999999998 47789999998864
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.10 E-value=1.2e-10 Score=107.66 Aligned_cols=60 Identities=20% Similarity=0.650 Sum_probs=49.3
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----------------CCCCCccccccCCCcccccccccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----------------HSTCPLCRYRVDPEDILLSFEKNI 137 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----------------~~tCPlCR~~v~~~~~~~~~~~~~ 137 (381)
.++.+|+||++.+.++ ++++ |||.||+.||..|+.. ...||+||..+...++.+.+....
T Consensus 16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~ 91 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQ 91 (193)
T ss_pred CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCC
Confidence 4567899999998766 4566 9999999999999852 347999999999888888776654
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.2e-10 Score=110.90 Aligned_cols=52 Identities=29% Similarity=0.811 Sum_probs=45.4
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL 131 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~ 131 (381)
...|.+|||....+ ..+| |||+||+.||..|...+..||+||.++.+.++..
T Consensus 239 ~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 239 TRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSKVIC 290 (293)
T ss_pred CCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCcceee
Confidence 45899999997666 4677 9999999999999999999999999998877643
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.80 E-value=3.3e-09 Score=77.55 Aligned_cols=46 Identities=35% Similarity=0.892 Sum_probs=38.4
Q ss_pred CcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccC
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
+..|.||++.... +..+| |||. ||..|+..|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4589999998543 56788 9999 999999999999999999999874
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.80 E-value=3.1e-09 Score=73.42 Aligned_cols=44 Identities=52% Similarity=1.230 Sum_probs=36.3
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCcccccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRV 124 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v 124 (381)
+|+||++.+ .+.+...+ |+|.||..|+..|+.. ...||+|+..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 33445555 9999999999999987 77899998754
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.79 E-value=3.5e-09 Score=73.62 Aligned_cols=39 Identities=33% Similarity=1.077 Sum_probs=32.8
Q ss_pred cccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcc
Q 016846 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLC 120 (381)
Q Consensus 79 C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlC 120 (381)
|+||++.+.+ .++.++ |||.||..|+.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999866 445676 99999999999999998899998
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.7e-09 Score=97.16 Aligned_cols=55 Identities=24% Similarity=0.641 Sum_probs=45.2
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL 131 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~ 131 (381)
.-..|+|||+.+..... +-.+|||+||..||+.-++....||+|++.+..+.+..
T Consensus 130 ~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchhhhee
Confidence 34689999999976643 32359999999999999999999999999888776543
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.72 E-value=1.1e-08 Score=77.27 Aligned_cols=51 Identities=24% Similarity=0.533 Sum_probs=43.8
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL 131 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~ 131 (381)
+.|+||++.+.++ ++++ |||+|+..||.+|+..+.+||+|+.++..+++..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~ 52 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIP 52 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhhcee
Confidence 4799999999876 4567 9999999999999998889999999886665543
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.69 E-value=4.7e-09 Score=98.78 Aligned_cols=53 Identities=28% Similarity=0.802 Sum_probs=39.8
Q ss_pred CCCCcccccccccccCC-----cceeecCCCCceeChhcHHHHhcCC------CCCCccccccC
Q 016846 73 HKDGLECAVCLTRFEPT-----EVLRLLPKCKHAFHVECVDTWLDSH------STCPLCRYRVD 125 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~-----~~v~~lp~CgH~FH~~CI~~Wl~~~------~tCPlCR~~v~ 125 (381)
...+.+|+||||....+ ....+|+.|+|.||..||..|...+ ..||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34456899999986432 1234566699999999999998753 35999999774
No 16
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.66 E-value=1.1e-08 Score=83.21 Aligned_cols=51 Identities=29% Similarity=0.780 Sum_probs=38.8
Q ss_pred CcccccccccccCC--------c-ceeecCCCCceeChhcHHHHhcC---CCCCCccccccCC
Q 016846 76 GLECAVCLTRFEPT--------E-VLRLLPKCKHAFHVECVDTWLDS---HSTCPLCRYRVDP 126 (381)
Q Consensus 76 ~~~C~ICle~~~~~--------~-~v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~~v~~ 126 (381)
++.|.||...|+.. + -..++.+|+|.||..||.+||.. +..||+||+++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 55799999988632 1 11233469999999999999986 5689999998754
No 17
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=7.7e-09 Score=109.52 Aligned_cols=52 Identities=31% Similarity=0.788 Sum_probs=44.4
Q ss_pred CCcccccccccccCCcc--eeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 75 DGLECAVCLTRFEPTEV--LRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~--v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
.+..|+||+|.+..+.. ...+| |+|.||..|+..|++++++||+||..+...
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 35689999999988654 56788 999999999999999999999999955443
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.61 E-value=2.1e-08 Score=71.32 Aligned_cols=38 Identities=34% Similarity=0.922 Sum_probs=29.1
Q ss_pred cccccccccCCcceeecCCCCceeChhcHHHHhcCC----CCCCcc
Q 016846 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH----STCPLC 120 (381)
Q Consensus 79 C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~----~tCPlC 120 (381)
|+||++.|.++ +.|+ |||.||..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999887 4566 99999999999998763 469988
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.56 E-value=3.4e-08 Score=68.80 Aligned_cols=39 Identities=46% Similarity=1.216 Sum_probs=33.4
Q ss_pred cccccccccCCcceeecCCCCceeChhcHHHHhc--CCCCCCcc
Q 016846 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD--SHSTCPLC 120 (381)
Q Consensus 79 C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~--~~~tCPlC 120 (381)
|+||++.+..+. ..++ |||.||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987663 4676 999999999999998 46679998
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=3.3e-08 Score=100.83 Aligned_cols=55 Identities=27% Similarity=0.654 Sum_probs=45.4
Q ss_pred CCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcc
Q 016846 71 RGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI 129 (381)
Q Consensus 71 ~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 129 (381)
......+.|+||++.|..+ ++++ |||.||..||..|+.....||+|+..+....+
T Consensus 21 ~~Le~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQESKL 75 (397)
T ss_pred cccccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccccC
Confidence 3345567999999999776 3566 99999999999999988899999998865543
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.55 E-value=4e-08 Score=70.16 Aligned_cols=44 Identities=27% Similarity=0.804 Sum_probs=37.8
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRY 122 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~ 122 (381)
.|+||++.|.......+++ |||.||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996556677787 9999999999999866778999984
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.47 E-value=8.1e-08 Score=63.95 Aligned_cols=38 Identities=39% Similarity=1.161 Sum_probs=31.9
Q ss_pred cccccccccCCcceeecCCCCceeChhcHHHHhc-CCCCCCcc
Q 016846 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-SHSTCPLC 120 (381)
Q Consensus 79 C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-~~~tCPlC 120 (381)
|+||++.. .....++ |+|.||..|+..|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999983 3456777 999999999999998 56679987
No 23
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7.3e-08 Score=92.66 Aligned_cols=51 Identities=33% Similarity=0.830 Sum_probs=42.9
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHH-HhcCCCC-CCccccccCCCcc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDT-WLDSHST-CPLCRYRVDPEDI 129 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~-Wl~~~~t-CPlCR~~v~~~~~ 129 (381)
.+..|+||++..+.+ ..++ |||+||+.||.. |-.++.. ||+||+.+.++++
T Consensus 214 ~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 214 ADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 456899999986655 5666 999999999999 9777665 9999999988775
No 24
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=4.2e-07 Score=93.62 Aligned_cols=50 Identities=34% Similarity=0.945 Sum_probs=39.0
Q ss_pred CcccccccccccCCc--------------ceeecCCCCceeChhcHHHHhcC-CCCCCccccccCC
Q 016846 76 GLECAVCLTRFEPTE--------------VLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDP 126 (381)
Q Consensus 76 ~~~C~ICle~~~~~~--------------~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~ 126 (381)
..+|+|||.++..-. ...++| |.|+||..|+.+|... +..||+||.++.+
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 457999999873321 123567 9999999999999994 6689999998754
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.4e-07 Score=94.87 Aligned_cols=58 Identities=24% Similarity=0.602 Sum_probs=45.2
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcC-----CCCCCccccccCCCcccccccccc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-----HSTCPLCRYRVDPEDILLSFEKNI 137 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-----~~tCPlCR~~v~~~~~~~~~~~~~ 137 (381)
+..|||||++...+ ..+. |||+||..||.++|.. ...||+|+..+.++++.+..-.+.
T Consensus 186 ~~~CPICL~~~~~p---~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~ 248 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD 248 (513)
T ss_pred CCcCCcccCCCCcc---cccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence 56899999986554 3344 9999999999998764 347999999999988776654443
No 26
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.24 E-value=5.5e-07 Score=71.07 Aligned_cols=54 Identities=20% Similarity=0.504 Sum_probs=41.0
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCccccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDILLS 132 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~~~ 132 (381)
+.+.|+||.+.|.++ +++| |||.|...||..|+.. +.+||+|+.++...++.+.
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred cccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence 456899999999887 4667 9999999999999999 8899999999987666543
No 27
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.22 E-value=2.7e-07 Score=91.46 Aligned_cols=58 Identities=29% Similarity=0.721 Sum_probs=48.3
Q ss_pred ccCCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccc
Q 016846 69 ALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 69 ~~~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~ 130 (381)
.+...++-+.|.||.|.|..+ .++| |+|.||..||...|..+..||.|+.++....+.
T Consensus 16 slk~lD~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr 73 (442)
T KOG0287|consen 16 SLKTLDDLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLR 73 (442)
T ss_pred hhhhhHHHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchhhhh
Confidence 334445567899999999877 5677 999999999999999999999999988766544
No 28
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.7e-07 Score=88.08 Aligned_cols=55 Identities=31% Similarity=0.706 Sum_probs=44.1
Q ss_pred CCCcccccccccccCCc-------ceeecCCCCceeChhcHHHHh--cCCCCCCccccccCCCcc
Q 016846 74 KDGLECAVCLTRFEPTE-------VLRLLPKCKHAFHVECVDTWL--DSHSTCPLCRYRVDPEDI 129 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~-------~v~~lp~CgH~FH~~CI~~Wl--~~~~tCPlCR~~v~~~~~ 129 (381)
.++..|+||-..+.... .+..|. |+|+||..||.-|. ..+++||.|+..++.+.+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rm 285 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRM 285 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhhh
Confidence 34558999998876554 556776 99999999999995 458899999999976654
No 29
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.12 E-value=1.2e-06 Score=70.36 Aligned_cols=29 Identities=45% Similarity=0.961 Sum_probs=27.2
Q ss_pred CCCceeChhcHHHHhcCCCCCCccccccC
Q 016846 97 KCKHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 97 ~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
.|.|.||..||.+||..+..||+||+++.
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 59999999999999999999999999874
No 30
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.1e-06 Score=81.43 Aligned_cols=45 Identities=36% Similarity=0.893 Sum_probs=39.2
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRY 122 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~ 122 (381)
.+...|+||++.|..+ .++| |+|.||..|+..++.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 4566899999999988 6787 9999999999999885667999993
No 31
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.1e-06 Score=73.75 Aligned_cols=50 Identities=30% Similarity=0.654 Sum_probs=37.7
Q ss_pred CcccccccccccC-------------CcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846 76 GLECAVCLTRFEP-------------TEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 76 ~~~C~ICle~~~~-------------~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
-+.|+||...+-+ .+-++.--.|.|.||..||.+||+.+..||+|.++..
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 3479999876511 1222333359999999999999999999999988764
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.04 E-value=3.1e-06 Score=83.82 Aligned_cols=54 Identities=22% Similarity=0.516 Sum_probs=39.7
Q ss_pred Cccccccccc-ccCCc-ceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCccc
Q 016846 76 GLECAVCLTR-FEPTE-VLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 76 ~~~C~ICle~-~~~~~-~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~ 130 (381)
+..||||... |-.++ .+.+.+ |||.||..|++..+.. ...||.|+..+....+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 3579999995 33343 333335 9999999999996644 56899999988776644
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.03 E-value=1.8e-06 Score=84.15 Aligned_cols=54 Identities=28% Similarity=0.608 Sum_probs=44.2
Q ss_pred ccCCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846 69 ALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 69 ~~~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
.+.+.+..+.|-||-+.|..+ ..++ |||.||..||...|..+..||+||.+...
T Consensus 18 SL~~LDs~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 18 SLKGLDSMLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred chhcchhHHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence 334445556899999999877 3455 99999999999999999999999987644
No 34
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.03 E-value=6.9e-07 Score=97.58 Aligned_cols=53 Identities=32% Similarity=0.816 Sum_probs=39.8
Q ss_pred CCCCcccccccccccCCc---ceeecCCCCceeChhcHHHHhcC--CCCCCccccccC
Q 016846 73 HKDGLECAVCLTRFEPTE---VLRLLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVD 125 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~---~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPlCR~~v~ 125 (381)
..+-.+|+||+..+..-+ .-..+++|.|.||..|+.+|+.. +.+||+||.++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 344568999998775211 12345579999999999999986 678999998763
No 35
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.99 E-value=4e-06 Score=60.11 Aligned_cols=38 Identities=29% Similarity=0.802 Sum_probs=22.2
Q ss_pred cccccccccCC-cceeecCCCCceeChhcHHHHhcCC----CCCC
Q 016846 79 CAVCLTRFEPT-EVLRLLPKCKHAFHVECVDTWLDSH----STCP 118 (381)
Q Consensus 79 C~ICle~~~~~-~~v~~lp~CgH~FH~~CI~~Wl~~~----~tCP 118 (381)
|+||.| |... ...++|+ |||.|+.+||.+++... ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 7553 3457788 99999999999998743 3576
No 36
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.94 E-value=1.9e-06 Score=67.80 Aligned_cols=50 Identities=30% Similarity=0.746 Sum_probs=23.4
Q ss_pred Cccccccccccc-CCc-ceeecC--CCCceeChhcHHHHhcC----C-------CCCCccccccC
Q 016846 76 GLECAVCLTRFE-PTE-VLRLLP--KCKHAFHVECVDTWLDS----H-------STCPLCRYRVD 125 (381)
Q Consensus 76 ~~~C~ICle~~~-~~~-~v~~lp--~CgH~FH~~CI~~Wl~~----~-------~tCPlCR~~v~ 125 (381)
+.+|.||++.+. .++ ...+.+ +|++.||..||.+||.. + ..||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 358999999865 322 223332 69999999999999863 1 25999998873
No 37
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2e-06 Score=68.50 Aligned_cols=50 Identities=30% Similarity=0.772 Sum_probs=36.6
Q ss_pred CcccccccccccCCcc---------eeecCCCCceeChhcHHHHhcC---CCCCCccccccC
Q 016846 76 GLECAVCLTRFEPTEV---------LRLLPKCKHAFHVECVDTWLDS---HSTCPLCRYRVD 125 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~---------v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~~v~ 125 (381)
+..|-||.-.|...-. ..++-.|.|.||..||.+|+.. +..||+||+.+.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3478899888854211 1123359999999999999975 457999998764
No 38
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.89 E-value=6.1e-06 Score=60.62 Aligned_cols=42 Identities=26% Similarity=0.811 Sum_probs=32.3
Q ss_pred ccccccccccCCcceeecCCCC-----ceeChhcHHHHhcC--CCCCCccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCK-----HAFHVECVDTWLDS--HSTCPLCR 121 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~Cg-----H~FH~~CI~~Wl~~--~~tCPlCR 121 (381)
.|.||++.. .++...+.| |. |.||..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~~~-~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-CCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 389999933 344445778 85 88999999999965 45899994
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1e-05 Score=80.96 Aligned_cols=49 Identities=29% Similarity=0.779 Sum_probs=40.5
Q ss_pred CCCcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccCC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
+.+.+|.|||.+. ..+.+|| |.|. .|..|.+..--++..||+||+++..
T Consensus 288 ~~gkeCVIClse~---rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSES---RDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCC---cceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 3466899999984 4457899 9999 9999999977678889999999853
No 40
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=3.5e-05 Score=73.05 Aligned_cols=56 Identities=25% Similarity=0.592 Sum_probs=46.6
Q ss_pred CCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC--------CCCCCccccccCCCc
Q 016846 71 RGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--------HSTCPLCRYRVDPED 128 (381)
Q Consensus 71 ~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--------~~tCPlCR~~v~~~~ 128 (381)
.+++....|..|--.+..++.+++. |.|+||++|+.+|-.+ ...||.|..++++..
T Consensus 45 ~DsDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 45 QDSDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred hhcCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 3455666899999999999998765 9999999999999643 457999999998754
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=3.5e-06 Score=84.08 Aligned_cols=51 Identities=27% Similarity=0.642 Sum_probs=41.3
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPE 127 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~ 127 (381)
..++.|+|||+.++.. +.++.|.|.||..||..-+.. +..||.||+.+..+
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 4456899999998765 344579999999999988866 78999999987543
No 42
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=9.5e-06 Score=87.62 Aligned_cols=54 Identities=33% Similarity=0.759 Sum_probs=42.8
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCccccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDILLS 132 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~~~ 132 (381)
+-..|++|-..+++. ++++|+|+||..|+..-+.. +..||.|...+.+.++.+.
T Consensus 642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred hceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence 345899999776543 44469999999999998876 6689999999988876543
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.66 E-value=1.8e-05 Score=61.36 Aligned_cols=51 Identities=27% Similarity=0.706 Sum_probs=24.9
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS 132 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~ 132 (381)
..|++|.+.+..+. .+..|.|+||..||..-+.. .||+|+.+.-..++...
T Consensus 8 LrCs~C~~~l~~pv---~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 8 LRCSICFDILKEPV---CLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp TS-SSS-S--SS-B------SSS--B-TTTGGGGTTT--B-SSS--B-S-SS----
T ss_pred cCCcHHHHHhcCCc---eeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHHhh
Confidence 47999999998772 33469999999999886553 49999998877766543
No 44
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.66 E-value=1.7e-05 Score=81.25 Aligned_cols=48 Identities=35% Similarity=0.944 Sum_probs=38.4
Q ss_pred CCcccccccccccCCc-ceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846 75 DGLECAVCLTRFEPTE-VLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~-~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
+-.+||||||.+.... .++... |.|.||..|+..|. ..+||+||....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence 4568999999997664 344555 99999999999994 468999998664
No 45
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1.8e-05 Score=79.85 Aligned_cols=47 Identities=28% Similarity=0.895 Sum_probs=35.2
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcC---CCCCCcccccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS---HSTCPLCRYRV 124 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~~v 124 (381)
.|.||.+-+-....+.-+..|||+||..|+.+|+.. +..||+|+-.+
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 799995544444444444469999999999999987 34799998444
No 46
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=1.2e-05 Score=60.39 Aligned_cols=45 Identities=27% Similarity=0.620 Sum_probs=35.0
Q ss_pred cccccccccccCCcceeecCCCCce-eChhcHHHHhc-CCCCCCccccccC
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLD-SHSTCPLCRYRVD 125 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~-~~~tCPlCR~~v~ 125 (381)
.+|.||+|.-.+. ++-.|||. .|+.|-.+.++ .+..||+||+++.
T Consensus 8 dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 5899999885444 23349998 89999877655 5889999999873
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.49 E-value=2.1e-05 Score=85.02 Aligned_cols=53 Identities=26% Similarity=0.468 Sum_probs=42.8
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~ 130 (381)
..|++|+..+.+.......+ |+|.||..||..|-..-.+||+||..+..-.+.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 36888888887665555555 999999999999999999999999988654443
No 48
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=5e-05 Score=74.59 Aligned_cols=48 Identities=27% Similarity=0.588 Sum_probs=38.3
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPED 128 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~ 128 (381)
.+|+||+....-+ ..++ |+|.||+.||+--... ..+|++||.+++..-
T Consensus 8 ~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 8 KECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 4799999886544 4666 9999999999876655 567999999997553
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.36 E-value=4.8e-05 Score=74.72 Aligned_cols=53 Identities=28% Similarity=0.783 Sum_probs=43.1
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhc-----------------------CCCCCCccccccCCC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-----------------------SHSTCPLCRYRVDPE 127 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-----------------------~~~tCPlCR~~v~~~ 127 (381)
.....|+|||.-|..++...+++ |.|.||..|+..+|. .+..||+||..+..+
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 34568999999999999888888 999999999988763 123699999988543
No 50
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=8.2e-05 Score=74.99 Aligned_cols=51 Identities=27% Similarity=0.892 Sum_probs=39.1
Q ss_pred CCcccccccccccCCc----ceeecCCCCceeChhcHHHHh--cC-----CCCCCccccccC
Q 016846 75 DGLECAVCLTRFEPTE----VLRLLPKCKHAFHVECVDTWL--DS-----HSTCPLCRYRVD 125 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~----~v~~lp~CgH~FH~~CI~~Wl--~~-----~~tCPlCR~~v~ 125 (381)
.+..|.||++...... ...++|+|.|.||..||..|- .+ ...||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 3568999999875543 123567799999999999997 33 467999998653
No 51
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=4.6e-05 Score=77.46 Aligned_cols=52 Identities=27% Similarity=0.770 Sum_probs=39.6
Q ss_pred CCcccccccccccCC-cceeecCCCCceeChhcHHHHhcC--CCCCCccccccCC
Q 016846 75 DGLECAVCLTRFEPT-EVLRLLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVDP 126 (381)
Q Consensus 75 ~~~~C~ICle~~~~~-~~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPlCR~~v~~ 126 (381)
.+..|+||++.++.+ +...+.+.|||.|-..||+.||.+ ...||.|..+-..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 356899999998665 344455569999999999999964 3469999765433
No 52
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.25 E-value=0.00017 Score=73.30 Aligned_cols=47 Identities=30% Similarity=0.883 Sum_probs=38.8
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcC--CCCCCccccccCCCc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVDPED 128 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPlCR~~v~~~~ 128 (381)
-|-||-|. ...+++-| |||..|..|+..|-.. .++||.||.++.-.+
T Consensus 371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 59999876 45567778 9999999999999754 679999999986544
No 53
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00022 Score=73.19 Aligned_cols=49 Identities=39% Similarity=0.912 Sum_probs=42.4
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
..+++|.||+..+..+ +.+| |||.||..||++-+.....||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 4568999999998777 4567 99999999999988888899999998864
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.81 E-value=0.00064 Score=69.75 Aligned_cols=54 Identities=26% Similarity=0.674 Sum_probs=44.5
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~ 130 (381)
+++..|++|...+.++-.. + .|||.||..|+..|+..+..||.|+..+.....+
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 4567899999999887332 2 4999999999999999999999999888655543
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.70 E-value=0.00082 Score=50.96 Aligned_cols=42 Identities=29% Similarity=0.690 Sum_probs=27.6
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC--CCCCCc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--HSTCPL 119 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPl 119 (381)
-...|||.+..|++| ++-. +|+|.|-...|.+||.. ...||+
T Consensus 10 ~~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 446899999999876 4444 49999999999999944 446998
No 56
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.0019 Score=62.26 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=52.7
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccccccc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEK 135 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~~~~ 135 (381)
.+.|+||.+.+.+...+.+|.+|||+|+.+|+.+.+..-..||+|-.++...+++.....
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~LqrG 280 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQRG 280 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeeecc
Confidence 457999999999988887887899999999999999999999999999998887765443
No 57
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.002 Score=62.82 Aligned_cols=49 Identities=31% Similarity=0.517 Sum_probs=37.5
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC--CCCCCccccccC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVD 125 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPlCR~~v~ 125 (381)
..+.+|++|-+.-..|-. ..+ |+|+||+.|+..-+.. ..+||.|-.++.
T Consensus 237 t~~~~C~~Cg~~PtiP~~--~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHV--IGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCee--ecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345689999998666633 344 9999999999986553 578999987764
No 58
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.42 E-value=0.0033 Score=61.03 Aligned_cols=63 Identities=19% Similarity=0.377 Sum_probs=48.9
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccccccccc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEKN 136 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~~~~~ 136 (381)
....+.|||+..+|......+.+..|||+|...||.+- .....||+|-.++...+++......
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI~Lnp~~ 172 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDIIPLNPPE 172 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEEEecCCc
Confidence 34567899999999666555566559999999999996 3356799999999988877654443
No 59
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0013 Score=59.66 Aligned_cols=41 Identities=27% Similarity=0.580 Sum_probs=31.7
Q ss_pred CceeecccCCCCCCcccccccccccCCcceeecCCCCceeCh
Q 016846 63 PIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHV 104 (381)
Q Consensus 63 p~~~~~~~~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~ 104 (381)
|.+.|.+.--.++..+|.||||+++.++++..|| |-.+||+
T Consensus 164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccccccchhcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 3334444333455679999999999999999999 9999996
No 60
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.34 E-value=0.0014 Score=61.32 Aligned_cols=48 Identities=21% Similarity=0.512 Sum_probs=39.6
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v 124 (381)
.+-.+.|.||-++|+.+ +++ .|||.||..|...-++....|-+|-+..
T Consensus 193 e~IPF~C~iCKkdy~sp---vvt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 193 EKIPFLCGICKKDYESP---VVT-ECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred CCCceeehhchhhccch---hhh-hcchhHHHHHHHHHhccCCcceecchhh
Confidence 33446899999999887 344 4999999999999888899999997654
No 61
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.17 E-value=0.0013 Score=66.88 Aligned_cols=46 Identities=37% Similarity=0.881 Sum_probs=37.7
Q ss_pred CcccccccccccC-CcceeecCCCCceeChhcHHHHhcCC--CCCCcccc
Q 016846 76 GLECAVCLTRFEP-TEVLRLLPKCKHAFHVECVDTWLDSH--STCPLCRY 122 (381)
Q Consensus 76 ~~~C~ICle~~~~-~~~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPlCR~ 122 (381)
+.-|..|-+.+-. ++.+..|| |.|+||..|+...|.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3569999998744 34677888 99999999999999774 57999984
No 62
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0048 Score=61.57 Aligned_cols=52 Identities=23% Similarity=0.524 Sum_probs=40.5
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI 129 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 129 (381)
+...|+||+....++..+. .-|.+||+.|+.+.+..+..||+--.+..-.++
T Consensus 299 ~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l 350 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHL 350 (357)
T ss_pred ccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCcchHHHH
Confidence 4458999999987774332 259999999999999999999998766654443
No 63
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.05 E-value=0.0031 Score=72.26 Aligned_cols=67 Identities=22% Similarity=0.580 Sum_probs=47.0
Q ss_pred HhhCCceeecc-cCCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC----------CCCCccccccCC
Q 016846 59 IESLPIFRFGA-LRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH----------STCPLCRYRVDP 126 (381)
Q Consensus 59 i~~Lp~~~~~~-~~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~----------~tCPlCR~~v~~ 126 (381)
-..||-+.-+. ...++.++.|.||+.+--.....+.|- |+|.||..|...-|++. -.||+|+.++..
T Consensus 3468 E~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3468 EHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hhcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 34455444322 234566778999998766666677786 99999999998765542 269999998854
No 64
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.94 E-value=0.0017 Score=64.70 Aligned_cols=50 Identities=20% Similarity=0.604 Sum_probs=41.8
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
.-..|.+|-..|.+...+. .|-|.||..||...|.....||.|...+-..
T Consensus 14 ~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 4458999999998775543 4999999999999999999999998777444
No 65
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.92 E-value=0.0023 Score=56.48 Aligned_cols=35 Identities=20% Similarity=0.632 Sum_probs=29.8
Q ss_pred CcccccccccccCCcceeecCCCC------ceeChhcHHHHh
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCK------HAFHVECVDTWL 111 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~Cg------H~FH~~CI~~Wl 111 (381)
..+|.||++.+...+.++.++ |+ |.||..|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 458999999998866777777 86 889999999994
No 66
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.87 E-value=0.0027 Score=66.77 Aligned_cols=51 Identities=27% Similarity=0.681 Sum_probs=38.8
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-----CCCCCccccccCCC
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-----HSTCPLCRYRVDPE 127 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-----~~tCPlCR~~v~~~ 127 (381)
..+..+|.+|.++-++. .... |.|.||..|+.+++.. +.+||.|-..+..+
T Consensus 533 nk~~~~C~lc~d~aed~---i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDY---IESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhhh---Hhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 34556899999986554 4454 9999999999988753 56899998777443
No 67
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.0061 Score=61.45 Aligned_cols=49 Identities=20% Similarity=0.474 Sum_probs=41.2
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
.++..|+||+.. +-..+..| |+|.-|+.||.+-+...+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 456689999876 43446778 99999999999999999999999998864
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.59 E-value=0.0089 Score=43.97 Aligned_cols=45 Identities=22% Similarity=0.509 Sum_probs=22.8
Q ss_pred cccccccccCCc-ceeecCCCCceeChhcHHHHhc-CCCCCCcccccc
Q 016846 79 CAVCLTRFEPTE-VLRLLPKCKHAFHVECVDTWLD-SHSTCPLCRYRV 124 (381)
Q Consensus 79 C~ICle~~~~~~-~v~~lp~CgH~FH~~CI~~Wl~-~~~tCPlCR~~v 124 (381)
|++|.+++...+ ...-.+ |++.+|..|...-+. ....||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999994443 333344 899999999988876 478899999875
No 69
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.51 E-value=0.0069 Score=49.82 Aligned_cols=31 Identities=29% Similarity=0.817 Sum_probs=25.5
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHH
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVD 108 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~ 108 (381)
+..|++|-..+..+ ...+.| |||+||..|+.
T Consensus 78 ~~~C~vC~k~l~~~-~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNS-VFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCc-eEEEeC-CCeEEeccccc
Confidence 44799999999774 555777 99999999975
No 70
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.47 E-value=0.0091 Score=43.45 Aligned_cols=40 Identities=33% Similarity=0.980 Sum_probs=27.3
Q ss_pred cccccccccCCcceeecCCCC-----ceeChhcHHHHhcC--CCCCCcc
Q 016846 79 CAVCLTRFEPTEVLRLLPKCK-----HAFHVECVDTWLDS--HSTCPLC 120 (381)
Q Consensus 79 C~ICle~~~~~~~v~~lp~Cg-----H~FH~~CI~~Wl~~--~~tCPlC 120 (381)
|-||++.-.....+ +.| |. ...|..||.+|+.. +..|++|
T Consensus 1 CrIC~~~~~~~~~l-i~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 77999987766533 456 65 36899999999974 5679987
No 71
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.0064 Score=59.94 Aligned_cols=44 Identities=23% Similarity=0.518 Sum_probs=37.9
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v 124 (381)
+.|-||...|..+ +++ +|+|.||..|...-++....|++|-+..
T Consensus 242 f~c~icr~~f~~p---Vvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVT-KCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccc---hhh-cCCceeehhhhccccccCCcceeccccc
Confidence 4699999999887 344 4999999999999888889999997765
No 72
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.33 E-value=0.0075 Score=66.43 Aligned_cols=50 Identities=30% Similarity=0.755 Sum_probs=40.3
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-------CCCCCccccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-------HSTCPLCRYR 123 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-------~~tCPlCR~~ 123 (381)
....+|.||++.+.....+-....|.|+||..||..|-.. ...||.|...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 4457999999999888777666679999999999999754 2369999743
No 73
>PHA02862 5L protein; Provisional
Probab=95.24 E-value=0.0081 Score=53.70 Aligned_cols=47 Identities=19% Similarity=0.597 Sum_probs=35.7
Q ss_pred cccccccccccCCcceeecCCCC-----ceeChhcHHHHhcC--CCCCCccccccCCCc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCK-----HAFHVECVDTWLDS--HSTCPLCRYRVDPED 128 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~Cg-----H~FH~~CI~~Wl~~--~~tCPlCR~~v~~~~ 128 (381)
..|=||+++-++. .-| |. ...|..|+.+|+.. +..||+|+.++..+.
T Consensus 3 diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 3 DICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 4799999985433 244 65 46999999999965 567999999986544
No 74
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.017 Score=58.31 Aligned_cols=43 Identities=30% Similarity=0.685 Sum_probs=31.1
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
...|.||+++.++ ...+| |||.-| |..-- +....||+||..+.
T Consensus 305 p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 4479999998655 46788 999966 65442 23445999998774
No 75
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.0073 Score=59.53 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=32.1
Q ss_pred CcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccC
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
..-|+||++. +.....|+ |||. -|.+|-... ..||+||+.+.
T Consensus 300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcC---CcceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence 4569999987 55567888 9998 677886553 37999998763
No 76
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.011 Score=60.70 Aligned_cols=47 Identities=21% Similarity=0.660 Sum_probs=37.5
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC--------CCCCCcccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--------HSTCPLCRY 122 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--------~~tCPlCR~ 122 (381)
....|.||+++.........+| |+|+||..|+..++.. ...||-|.-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3458999999987767888999 9999999999998753 235876643
No 77
>PHA03096 p28-like protein; Provisional
Probab=94.74 E-value=0.012 Score=58.27 Aligned_cols=46 Identities=26% Similarity=0.621 Sum_probs=32.9
Q ss_pred cccccccccccCCc----ceeecCCCCceeChhcHHHHhcC---CCCCCcccc
Q 016846 77 LECAVCLTRFEPTE----VLRLLPKCKHAFHVECVDTWLDS---HSTCPLCRY 122 (381)
Q Consensus 77 ~~C~ICle~~~~~~----~v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~ 122 (381)
-.|.||++...... .-..|+.|.|.||..|+..|-.. ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 47999999875432 23467789999999999999754 334544443
No 78
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.71 E-value=0.015 Score=57.65 Aligned_cols=50 Identities=34% Similarity=0.672 Sum_probs=37.2
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHh-cCCCCCCcccc-ccCCCcc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL-DSHSTCPLCRY-RVDPEDI 129 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl-~~~~tCPlCR~-~v~~~~~ 129 (381)
+.|+.|..-+..+.+ +|-|+|.||.+||..-| .....||.|.. .+..+.+
T Consensus 275 LkCplc~~Llrnp~k---T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l 326 (427)
T COG5222 275 LKCPLCHCLLRNPMK---TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGL 326 (427)
T ss_pred ccCcchhhhhhCccc---CccccchHHHHHHhhhhhhccccCCCcccccchhhcc
Confidence 689999988877743 35599999999998665 55788999954 4433333
No 79
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.68 E-value=0.016 Score=58.29 Aligned_cols=56 Identities=21% Similarity=0.504 Sum_probs=39.7
Q ss_pred CCCcccccccccccCCcce-eecCCCCceeChhcHHHHhcC-CCCCCccccccCCCccc
Q 016846 74 KDGLECAVCLTRFEPTEVL-RLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v-~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~ 130 (381)
++++-|+.|+|++...++- .-+| ||...|..|...--+. +..||-||..++.+.+.
T Consensus 12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~denv~ 69 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDENVR 69 (480)
T ss_pred cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcccccee
Confidence 3344599999999777653 3455 8988787776553322 67899999988777653
No 80
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.46 E-value=0.034 Score=56.12 Aligned_cols=64 Identities=20% Similarity=0.505 Sum_probs=43.7
Q ss_pred HHhhCCceeecccCC-CCCCcccccccccccCCcceeecCCCCceeChhcHHHH--hcCCCCCCccccccC
Q 016846 58 VIESLPIFRFGALRG-HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW--LDSHSTCPLCRYRVD 125 (381)
Q Consensus 58 ~i~~Lp~~~~~~~~~-~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W--l~~~~tCPlCR~~v~ 125 (381)
.+..-|.+.-...++ +.+...|.||-+.+. ...++| |+|..|.-|-... |..++.||+||....
T Consensus 42 nlsaEPnlttsSaddtDEen~~C~ICA~~~T---Ys~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 42 NLSAEPNLTTSSADDTDEENMNCQICAGSTT---YSARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccCCccccccccccccccceeEEecCCce---EEEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 334445444444333 334567999988753 346788 9999999998653 566889999998763
No 81
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.46 E-value=0.013 Score=56.30 Aligned_cols=48 Identities=23% Similarity=0.607 Sum_probs=34.9
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI 129 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 129 (381)
.|..|.---. ++...++. |+|+||..|...-. ...||+|++++....+
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l 52 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIRIIQL 52 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceeeeeec
Confidence 5887866544 66777776 99999999976532 3389999998754443
No 82
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.36 E-value=0.025 Score=51.33 Aligned_cols=49 Identities=20% Similarity=0.634 Sum_probs=35.5
Q ss_pred CCCcccccccccccCCcceeecCCCC--c---eeChhcHHHHhcC--CCCCCccccccCCC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCK--H---AFHVECVDTWLDS--HSTCPLCRYRVDPE 127 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~Cg--H---~FH~~CI~~Wl~~--~~tCPlCR~~v~~~ 127 (381)
..+..|-||.++... . .-| |. . ..|.+|+..|+.. ...|++|+.++...
T Consensus 6 ~~~~~CRIC~~~~~~--~--~~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV--V--TNY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC--c--cCC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 445689999988532 2 234 54 3 5799999999976 45799999888543
No 83
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=93.90 E-value=0.066 Score=37.47 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=24.0
Q ss_pred CeehhhHHHHHHHHHHHHHHHHHhhcCCC
Q 016846 1 MAVVVGVLTTMFSMTFLLLLYAKHCKRGN 29 (381)
Q Consensus 1 IaiII~Vl~iif~l~~llliyik~c~rr~ 29 (381)
|++|.+|++++.++++.+++|++++++.+
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 57888999999999999888888777644
No 84
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.049 Score=53.29 Aligned_cols=47 Identities=30% Similarity=0.789 Sum_probs=37.7
Q ss_pred cccccccccccCCc---ceeecCCCCceeChhcHHHHhcC-CCCCCcccccc
Q 016846 77 LECAVCLTRFEPTE---VLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRV 124 (381)
Q Consensus 77 ~~C~ICle~~~~~~---~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v 124 (381)
..|-||-++|...+ ..+.| +|||.||..|+...+.. ...||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 47999999997763 23455 49999999999988766 44699999985
No 85
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.16 E-value=0.058 Score=40.74 Aligned_cols=45 Identities=24% Similarity=0.527 Sum_probs=32.9
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
.|..|... +.+-.++| |+|+.+..|..-+ .-+-||+|-.++...+
T Consensus 9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred eEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCCC
Confidence 56666554 33345788 9999999997653 5567999999987654
No 86
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.08 E-value=0.023 Score=62.25 Aligned_cols=49 Identities=29% Similarity=0.743 Sum_probs=38.1
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcC--CCCCCccccccCCCccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPlCR~~v~~~~~~ 130 (381)
..|.||++ .+.....+ |+|.||..|+..-+.. ...||+||..+..+.+.
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL 505 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence 58999999 34445666 9999999999988765 33699999988665543
No 87
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.057 Score=50.00 Aligned_cols=29 Identities=31% Similarity=0.967 Sum_probs=23.9
Q ss_pred CCCceeChhcHHHHhcC-----C------CCCCccccccC
Q 016846 97 KCKHAFHVECVDTWLDS-----H------STCPLCRYRVD 125 (381)
Q Consensus 97 ~CgH~FH~~CI~~Wl~~-----~------~tCPlCR~~v~ 125 (381)
.||.-||.-|+..||.. + ..||.|-.++.
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 49999999999999964 1 25999988774
No 88
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.40 E-value=0.064 Score=52.81 Aligned_cols=45 Identities=24% Similarity=0.625 Sum_probs=37.3
Q ss_pred cccccccccccCCcc-eeecCCCCceeChhcHHHHhcCCCCCCcccc
Q 016846 77 LECAVCLTRFEPTEV-LRLLPKCKHAFHVECVDTWLDSHSTCPLCRY 122 (381)
Q Consensus 77 ~~C~ICle~~~~~~~-v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~ 122 (381)
..||||.+.+..... +..++ |||..|..|+......+.+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 359999998766653 44565 9999999999998877899999988
No 89
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.37 E-value=0.084 Score=37.74 Aligned_cols=41 Identities=22% Similarity=0.621 Sum_probs=23.5
Q ss_pred cccccccccCCcceeecCCCCceeChhcHHHHhcCCC--CCCcc
Q 016846 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS--TCPLC 120 (381)
Q Consensus 79 C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~--tCPlC 120 (381)
|.+|.+.+..+...... .|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888877766433222 4888999999999998754 79988
No 90
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.06 E-value=0.11 Score=47.14 Aligned_cols=52 Identities=27% Similarity=0.649 Sum_probs=33.7
Q ss_pred CcccccccccccCCcceeecC------C-----CCc-eeChhcHHHHhcC------------------------------
Q 016846 76 GLECAVCLTRFEPTEVLRLLP------K-----CKH-AFHVECVDTWLDS------------------------------ 113 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp------~-----CgH-~FH~~CI~~Wl~~------------------------------ 113 (381)
+..|+||||.-.+. ++|- . |+- .-|..||++.-+.
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ 78 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence 45899999986554 2332 1 332 2477899987421
Q ss_pred -CCCCCccccccCCCccc
Q 016846 114 -HSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 114 -~~tCPlCR~~v~~~~~~ 130 (381)
+..||+||..|....++
T Consensus 79 ~~L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 79 PELACPLCRGEVKGWTVV 96 (162)
T ss_pred ccccCccccCceeceEEc
Confidence 23599999999766544
No 91
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.85 E-value=0.067 Score=59.26 Aligned_cols=42 Identities=24% Similarity=0.748 Sum_probs=33.0
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v 124 (381)
..|..|--.++.| .+.-. |||.||..|+. .....||.|+...
T Consensus 841 skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccchhh
Confidence 3799999888777 33444 99999999998 4566899998743
No 92
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.64 E-value=0.18 Score=51.46 Aligned_cols=32 Identities=31% Similarity=0.896 Sum_probs=23.4
Q ss_pred CCceeChhcHHHHhcC-------------CCCCCccccccCCCcc
Q 016846 98 CKHAFHVECVDTWLDS-------------HSTCPLCRYRVDPEDI 129 (381)
Q Consensus 98 CgH~FH~~CI~~Wl~~-------------~~tCPlCR~~v~~~~~ 129 (381)
|.-.+|.+|+-+|+-. +-.||+||+.+...++
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 3455788999998743 3479999999876553
No 93
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=0.016 Score=59.09 Aligned_cols=51 Identities=18% Similarity=0.539 Sum_probs=43.0
Q ss_pred cccccccccccCC-cceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 77 LECAVCLTRFEPT-EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 77 ~~C~ICle~~~~~-~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
..|+||.+.|+.. +.+..+- |||.+|..||.+||.....||.|+..+....
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 3799999998776 5565665 9999999999999999889999999886443
No 94
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=90.91 E-value=0.22 Score=37.59 Aligned_cols=40 Identities=25% Similarity=0.711 Sum_probs=32.7
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPL 119 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPl 119 (381)
...|++|-+.|.+++.+++.|.||-.+|..|... ...|-+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 4479999999998888889999999999999544 444544
No 95
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=0.1 Score=52.13 Aligned_cols=42 Identities=43% Similarity=0.889 Sum_probs=28.8
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v 124 (381)
.|--|--.+ .-.-+.+| |+|+||.+|... ..-+.||.|-..|
T Consensus 92 fCd~Cd~PI--~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPI--AIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcc--eeeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 366664443 22346788 999999999764 4466899996554
No 96
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.05 E-value=0.16 Score=48.00 Aligned_cols=39 Identities=33% Similarity=0.798 Sum_probs=30.0
Q ss_pred cccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccC
Q 016846 79 CAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 79 C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
|-.|-+. ...+.++| |.|. +|..|-.. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 8888665 66788899 9988 88889554 346999987654
No 97
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.44 E-value=0.099 Score=60.25 Aligned_cols=45 Identities=27% Similarity=0.716 Sum_probs=37.3
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYR 123 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~ 123 (381)
...|.||++.+.....+. .|||.+|..|+..|+..+..||.|+.-
T Consensus 1153 ~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred ccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhh
Confidence 347999999998543332 399999999999999999999999743
No 98
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.75 E-value=0.21 Score=54.92 Aligned_cols=40 Identities=25% Similarity=0.640 Sum_probs=28.4
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPL 119 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPl 119 (381)
.|+||--.+..... ... .|+|+.|..|...|+.....||.
T Consensus 1030 ~C~~C~l~V~gss~-~Cg-~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVRGSSN-FCG-TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeEeeEeeccch-hhc-cccccccHHHHHHHHhcCCcCCC
Confidence 46665544433222 233 49999999999999999999984
No 99
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.49 E-value=0.15 Score=49.63 Aligned_cols=51 Identities=24% Similarity=0.677 Sum_probs=35.9
Q ss_pred CCCCcccccccccccCCcce-eecCCCC-----ceeChhcHHHHhcCC--------CCCCcccccc
Q 016846 73 HKDGLECAVCLTRFEPTEVL-RLLPKCK-----HAFHVECVDTWLDSH--------STCPLCRYRV 124 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v-~~lp~Cg-----H~FH~~CI~~Wl~~~--------~tCPlCR~~v 124 (381)
...+..|=||+..=++.... -+-| |. |-.|..|+..|+..+ ..||.|+.++
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 34455799999876554322 2344 63 779999999998542 2599999876
No 100
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.67 E-value=0.44 Score=47.58 Aligned_cols=45 Identities=29% Similarity=0.775 Sum_probs=35.0
Q ss_pred CCCCcccccccccccCCcceeecCCC--CceeChhcHHHHhcCCCCCCccccccC
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKC--KHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~C--gH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
..+-++||||.+.+..+ ... | ||..|..|-.+ ....||.||.++.
T Consensus 45 ~~~lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCccc----cee-cCCCcEehhhhhhh---hcccCCccccccc
Confidence 34556899999999887 232 6 69999999653 4678999999885
No 101
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=86.06 E-value=0.74 Score=40.03 Aligned_cols=20 Identities=5% Similarity=0.268 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 016846 4 VVGVLTTMFSMTFLLLLYAK 23 (381)
Q Consensus 4 II~Vl~iif~l~~llliyik 23 (381)
+++||+++|+|+|++++++.
T Consensus 4 l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 102
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.01 E-value=0.41 Score=53.17 Aligned_cols=55 Identities=31% Similarity=0.723 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCcceeecCCCC-----ceeChhcHHHHhcC--CCCCCccccccCCCccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCK-----HAFHVECVDTWLDS--HSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~Cg-----H~FH~~CI~~Wl~~--~~tCPlCR~~v~~~~~~ 130 (381)
+++..|-||..+-..++.+- -| |+ ...|.+|+.+|+.- ...|-+|..++..+++.
T Consensus 10 ~d~~~CRICr~e~~~d~pLf-hP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLF-HP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred ccchhceeecCCCCCCCcCc-cc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence 34568999998876666653 34 65 34899999999975 45699999998776654
No 103
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.69 E-value=0.31 Score=54.50 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=26.2
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHH
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W 110 (381)
+..|.+|.-.+-.. .-.+-| |||.||+.||.+-
T Consensus 817 ~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRH 849 (911)
T ss_pred ccchHHhcchhhcC-cceeee-ccchHHHHHHHHH
Confidence 45899999887654 445667 9999999999765
No 104
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.28 E-value=0.54 Score=46.59 Aligned_cols=51 Identities=22% Similarity=0.580 Sum_probs=35.9
Q ss_pred cccccccc-ccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCc
Q 016846 78 ECAVCLTR-FEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPED 128 (381)
Q Consensus 78 ~C~ICle~-~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~ 128 (381)
.|++|-.. |-.++.......|+|..|..|++..+.. ...||.|-..+-...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 59999764 4555533333349999999999998866 457999976654333
No 105
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=84.77 E-value=0.29 Score=47.37 Aligned_cols=49 Identities=24% Similarity=0.621 Sum_probs=36.2
Q ss_pred Cccccccccc-ccCCc-ceeecCCCCceeChhcHHHHhcCC-CCCC--cccccc
Q 016846 76 GLECAVCLTR-FEPTE-VLRLLPKCKHAFHVECVDTWLDSH-STCP--LCRYRV 124 (381)
Q Consensus 76 ~~~C~ICle~-~~~~~-~v~~lp~CgH~FH~~CI~~Wl~~~-~tCP--lCR~~v 124 (381)
+..||||..+ |-.|+ ++.+-|.|-|..|..|++.-+... ..|| -|.+-+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 4479999875 44444 444556799999999999998775 4699 885433
No 106
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.64 E-value=0.44 Score=46.31 Aligned_cols=51 Identities=25% Similarity=0.639 Sum_probs=37.0
Q ss_pred CcccccccccccCCcc-eeecCCCC-----ceeChhcHHHHhc--CCCCCCccccccCCC
Q 016846 76 GLECAVCLTRFEPTEV-LRLLPKCK-----HAFHVECVDTWLD--SHSTCPLCRYRVDPE 127 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~-v~~lp~Cg-----H~FH~~CI~~Wl~--~~~tCPlCR~~v~~~ 127 (381)
+..|-||.++...... ....| |. +..|..|+..|+. ....|.+|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4689999997654432 23455 64 5589999999997 466799998866443
No 107
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=83.58 E-value=0.56 Score=41.59 Aligned_cols=52 Identities=17% Similarity=0.413 Sum_probs=36.3
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC---CCCCCccccccCC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS---HSTCPLCRYRVDP 126 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~~v~~ 126 (381)
.-.+|.||.|...+..-+.----||...|..|-...++. +..||+|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 345899999986554322111139999999988775543 7789999988754
No 108
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.80 E-value=0.87 Score=46.85 Aligned_cols=49 Identities=16% Similarity=0.346 Sum_probs=39.0
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC---CCCCcccccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH---STCPLCRYRV 124 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~---~tCPlCR~~v 124 (381)
.-+.|||=.+.-.+.+....|. |||+...+-+.+..+.. ..||.|=...
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 4568999888877777778887 99999999999977653 4699994433
No 109
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.86 E-value=0.69 Score=51.31 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=35.1
Q ss_pred CcccccccccccCCc---ceeecCCCCceeChhcHHHHhcC------CCCCCccccccC
Q 016846 76 GLECAVCLTRFEPTE---VLRLLPKCKHAFHVECVDTWLDS------HSTCPLCRYRVD 125 (381)
Q Consensus 76 ~~~C~ICle~~~~~~---~v~~lp~CgH~FH~~CI~~Wl~~------~~tCPlCR~~v~ 125 (381)
...|.||.-++..++ .+..+..|+|.||..||..|+.+ +-.|++|...|.
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 456888877776632 22222359999999999999864 346899977664
No 110
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=81.20 E-value=0.41 Score=52.40 Aligned_cols=48 Identities=33% Similarity=0.811 Sum_probs=36.8
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcC---CCCCCccccccCCC
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS---HSTCPLCRYRVDPE 127 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~~v~~~ 127 (381)
..+|+||+..+..+ ..+ +|.|.|+..|+..-|.. ...||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 34899999999887 233 59999999999876654 34699998666433
No 111
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.00 E-value=0.62 Score=47.98 Aligned_cols=38 Identities=29% Similarity=0.737 Sum_probs=27.3
Q ss_pred CCcccccccc-cccCCcceeecCCCCceeChhcHHHHhcC
Q 016846 75 DGLECAVCLT-RFEPTEVLRLLPKCKHAFHVECVDTWLDS 113 (381)
Q Consensus 75 ~~~~C~ICle-~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~ 113 (381)
...+|.||.. .....+...+. +|+|.||.+|+.+.++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 3458999994 44433444444 59999999999988764
No 112
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=80.80 E-value=0.76 Score=33.80 Aligned_cols=43 Identities=28% Similarity=0.681 Sum_probs=21.4
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcC-----CCCCCccccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-----HSTCPLCRYR 123 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-----~~tCPlCR~~ 123 (381)
+.|+|....+..+ ++... |.|.-|.+ +..||.. .-.||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4799999888665 55555 99985544 5566643 3369999763
No 113
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.96 E-value=1 Score=48.22 Aligned_cols=45 Identities=33% Similarity=0.895 Sum_probs=37.1
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
...|.||+... ..+..+ |. |..|+..|+..+.+||+|...+..++
T Consensus 479 ~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 479 NDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence 34799999998 345666 88 89999999999999999988776544
No 114
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=78.97 E-value=1.4 Score=38.58 Aligned_cols=27 Identities=11% Similarity=0.439 Sum_probs=16.0
Q ss_pred eehhhHHHHHHHHHHHHHHHHHhhcCC
Q 016846 2 AVVVGVLTTMFSMTFLLLLYAKHCKRG 28 (381)
Q Consensus 2 aiII~Vl~iif~l~~llliyik~c~rr 28 (381)
.||+||+++++.++++++|++++.+++
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467777777777666656555554443
No 115
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=77.11 E-value=1 Score=33.28 Aligned_cols=29 Identities=24% Similarity=0.745 Sum_probs=21.7
Q ss_pred CC-ceeChhcHHHHhcCCCCCCccccccCC
Q 016846 98 CK-HAFHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 98 Cg-H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
|. |..|..|+...|.....||+|..++..
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 75 999999999999999999999988753
No 116
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=76.72 E-value=0.87 Score=49.23 Aligned_cols=45 Identities=29% Similarity=0.750 Sum_probs=28.9
Q ss_pred CCCCccccccccc-----ccCCcceeecCCCCceeChhcHHHHhcCCCCCCccc
Q 016846 73 HKDGLECAVCLTR-----FEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121 (381)
Q Consensus 73 ~~~~~~C~ICle~-----~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR 121 (381)
....+.|.+|... |+.....+.. .|+++||..|+.. ....||.|-
T Consensus 508 ~~~gfiCe~Cq~~~iiyPF~~~~~~rC~-~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 508 TGKGFICELCQHNDIIYPFETRNTRRCS-TCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred ccCeeeeeeccCCCcccccccccceeHH-HHHHHHHHHHHhc---cCCCCCchH
Confidence 3456789999432 3322233334 5999999999665 344599993
No 117
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.62 E-value=1.7 Score=42.49 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=40.9
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS 132 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~ 132 (381)
.+.|+|---+|........+..|||+|-..-+.+. ...+|++|...+..++++..
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvl 165 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVL 165 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEee
Confidence 45799987777655544455569999988877763 36789999999988886544
No 118
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=76.42 E-value=1.8 Score=40.64 Aligned_cols=41 Identities=34% Similarity=0.896 Sum_probs=29.9
Q ss_pred CCccccccccc-----ccCCcceeecCCCCceeChhcHHHHhcCCCCCCccc
Q 016846 75 DGLECAVCLTR-----FEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121 (381)
Q Consensus 75 ~~~~C~ICle~-----~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR 121 (381)
.++.|-||-+. |+. +.+...++|+-+||..|..+ ..||.|-
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 35689999753 333 35566778999999999762 6699994
No 119
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.22 E-value=0.95 Score=45.05 Aligned_cols=32 Identities=22% Similarity=0.603 Sum_probs=24.6
Q ss_pred CCceeChhcHHHHhc-------------CCCCCCccccccCCCcc
Q 016846 98 CKHAFHVECVDTWLD-------------SHSTCPLCRYRVDPEDI 129 (381)
Q Consensus 98 CgH~FH~~CI~~Wl~-------------~~~tCPlCR~~v~~~~~ 129 (381)
|.-.+|..|+.+|+. ++-+||+||+.+...++
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 566788999999873 34589999999876554
No 120
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.38 E-value=0.84 Score=49.64 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=30.4
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR 121 (381)
..|.||+..|......-+.+.|||..|..|+... .+.+|| |+
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~ 53 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TK 53 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CC
Confidence 4699998887665433333459999999999874 356788 54
No 121
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=74.90 E-value=2.5 Score=31.57 Aligned_cols=43 Identities=28% Similarity=0.597 Sum_probs=23.0
Q ss_pred cccccccccCCc------ceeecCCCCceeChhcHHHHhcCCCCCCccc
Q 016846 79 CAVCLTRFEPTE------VLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121 (381)
Q Consensus 79 C~ICle~~~~~~------~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR 121 (381)
|--|+..|.... .....|+|++.||.+|=.---+.-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 666777776652 3456778999999999443223445799884
No 122
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=73.81 E-value=1.5 Score=45.87 Aligned_cols=35 Identities=29% Similarity=0.692 Sum_probs=29.0
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS 113 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~ 113 (381)
+++.|+||..-|+++ ++|| |+|..|..|...-+.+
T Consensus 3 eelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILP-CSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc---eEee-cccHHHHHHHHhhccc
Confidence 456899999999877 6788 9999999998876544
No 123
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.16 E-value=4.7 Score=34.81 Aligned_cols=45 Identities=27% Similarity=0.438 Sum_probs=34.1
Q ss_pred cccccccccccCCc----------ceeecCCCCceeChhcHHHHhcCCCCCCccc
Q 016846 77 LECAVCLTRFEPTE----------VLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121 (381)
Q Consensus 77 ~~C~ICle~~~~~~----------~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR 121 (381)
..|--|+..|.... .....++|++.||.+|=.-+-+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999999886431 1234667999999999877777767799995
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=71.87 E-value=2.6 Score=46.74 Aligned_cols=44 Identities=25% Similarity=0.461 Sum_probs=32.7
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCc--cccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPL--CRYR 123 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPl--CR~~ 123 (381)
.|.+|-..+.. .....+.|+|.-|..|+.+|+.....||. |-..
T Consensus 781 ~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 781 KCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHL 826 (839)
T ss_pred Cceeecceeee--eEeecccccccccHHHHHHHHhcCCCCccccCCcc
Confidence 58888766532 22345569999999999999998888876 6443
No 125
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=70.34 E-value=2 Score=27.59 Aligned_cols=23 Identities=26% Similarity=0.655 Sum_probs=14.4
Q ss_pred ccccccccccCCcceeecCCCCcee
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAF 102 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~F 102 (381)
.||-|...+. ......|.|||.|
T Consensus 2 ~CP~C~~~V~--~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP--ESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCch--hhcCcCCCCCCCC
Confidence 4777777663 3344556677776
No 126
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.03 E-value=3.1 Score=42.92 Aligned_cols=44 Identities=25% Similarity=0.505 Sum_probs=32.9
Q ss_pred CcccccccccccCCc--ceeecCCCCceeChhcHHHHhcCCCCCCcc
Q 016846 76 GLECAVCLTRFEPTE--VLRLLPKCKHAFHVECVDTWLDSHSTCPLC 120 (381)
Q Consensus 76 ~~~C~ICle~~~~~~--~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlC 120 (381)
-..|+.|.-.++... ...... |||.||+.|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 347999887765544 233455 99999999999998888877655
No 127
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.93 E-value=3.6 Score=40.94 Aligned_cols=39 Identities=26% Similarity=0.521 Sum_probs=28.9
Q ss_pred CCcccccccccccCCcceeecCC-CCceeChhcHHHHhcCC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPK-CKHAFHVECVDTWLDSH 114 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~-CgH~FH~~CI~~Wl~~~ 114 (381)
.-+.|.+|.|.+++..-| .+|. =.|.||+.|-.+-++.+
T Consensus 267 apLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHhh
Confidence 347899999999887554 2221 15999999999988753
No 128
>PLN02189 cellulose synthase
Probab=64.88 E-value=6.8 Score=45.16 Aligned_cols=49 Identities=16% Similarity=0.464 Sum_probs=36.1
Q ss_pred ccccccccccc---CCcceeecCCCCceeChhcHHHH-hcCCCCCCccccccC
Q 016846 77 LECAVCLTRFE---PTEVLRLLPKCKHAFHVECVDTW-LDSHSTCPLCRYRVD 125 (381)
Q Consensus 77 ~~C~ICle~~~---~~~~v~~lp~CgH~FH~~CI~~W-l~~~~tCPlCR~~v~ 125 (381)
..|.||-+++. +++.-+.+..|+--.|..|.+-= -+.++.||.|+..+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 37999999974 34455556668888999998432 234778999998875
No 129
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=64.67 E-value=3.2 Score=39.60 Aligned_cols=43 Identities=26% Similarity=0.674 Sum_probs=34.4
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRY 122 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~ 122 (381)
..|.+|..-.-.+ ++.- .|+-.+|..|+...++....||.|..
T Consensus 182 k~Cn~Ch~LvIqg--~rCg-~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCG-SCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhhee--eccC-cccchhhhHHHHHHhcccCcCCchhc
Confidence 4799999877555 2222 48888999999999999999999944
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=62.96 E-value=6.4 Score=39.84 Aligned_cols=47 Identities=26% Similarity=0.584 Sum_probs=35.1
Q ss_pred cccccccccccCCc-ceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846 77 LECAVCLTRFEPTE-VLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124 (381)
Q Consensus 77 ~~C~ICle~~~~~~-~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v 124 (381)
..|+||.+.....+ ...-.| |++..|..|+..-...+..||.||++.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCcc
Confidence 57999999874333 222334 888888888888888889999999544
No 131
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=61.36 E-value=6.9 Score=39.69 Aligned_cols=61 Identities=21% Similarity=0.433 Sum_probs=39.0
Q ss_pred hCCceeecccCCC--CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccc
Q 016846 61 SLPIFRFGALRGH--KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRY 122 (381)
Q Consensus 61 ~Lp~~~~~~~~~~--~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~ 122 (381)
-+|...+.+.... .....|-.|.++.......+ .+.|.+.||.+|=.---+.-..||-|..
T Consensus 313 L~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~-C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 313 LFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYR-CESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred hcCCcchhhccccccCCCcceeeeccccCCCCcEE-chhccceeeccchHHHHhhhhcCCCcCC
Confidence 3454445443322 23445999988877665554 4459999999995544344557999963
No 132
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=60.65 E-value=6 Score=34.32 Aligned_cols=20 Identities=25% Similarity=0.535 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 016846 8 LTTMFSMTFLLLLYAKHCKR 27 (381)
Q Consensus 8 l~iif~l~~llliyik~c~r 27 (381)
|+++|+++|+|++++.+|..
T Consensus 4 l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 133
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=59.37 E-value=10 Score=44.03 Aligned_cols=49 Identities=18% Similarity=0.473 Sum_probs=35.5
Q ss_pred cccccccccccC---CcceeecCCCCceeChhcHH-HHhcCCCCCCccccccC
Q 016846 77 LECAVCLTRFEP---TEVLRLLPKCKHAFHVECVD-TWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 77 ~~C~ICle~~~~---~~~v~~lp~CgH~FH~~CI~-~Wl~~~~tCPlCR~~v~ 125 (381)
..|.||-+++.. ++.-+.+..|+--.|..|.+ +.-+.++.||.|+..+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 379999998733 34445555688889999984 22344788999998875
No 134
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=59.30 E-value=6.7 Score=26.95 Aligned_cols=26 Identities=38% Similarity=0.759 Sum_probs=16.8
Q ss_pred ccccccccccCCcc-------eeecCCCCceeC
Q 016846 78 ECAVCLTRFEPTEV-------LRLLPKCKHAFH 103 (381)
Q Consensus 78 ~C~ICle~~~~~~~-------v~~lp~CgH~FH 103 (381)
.|+-|...|..++. ....++|+|.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 68888887766542 234456777774
No 135
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=59.28 E-value=6.4 Score=30.02 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=19.4
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHh
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL 111 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl 111 (381)
...|.+|...|..-..-.....||++||..|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 457999999996655444555699999999987654
No 136
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=59.22 E-value=10 Score=30.73 Aligned_cols=51 Identities=22% Similarity=0.482 Sum_probs=20.3
Q ss_pred CcccccccccccC---CcceeecCCCCceeChhcHHHHh-cCCCCCCccccccCC
Q 016846 76 GLECAVCLTRFEP---TEVLRLLPKCKHAFHVECVDTWL-DSHSTCPLCRYRVDP 126 (381)
Q Consensus 76 ~~~C~ICle~~~~---~~~v~~lp~CgH~FH~~CI~~Wl-~~~~tCPlCR~~v~~ 126 (381)
...|.||-+.+.. ++..+..-.|+--.|..|..-=. ..++.||.|+..+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 3479999998733 33333334577788999986433 447889999987753
No 137
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PLN02436 cellulose synthase A
Probab=57.80 E-value=11 Score=43.71 Aligned_cols=49 Identities=18% Similarity=0.465 Sum_probs=36.0
Q ss_pred cccccccccc---cCCcceeecCCCCceeChhcHHHHh-cCCCCCCccccccC
Q 016846 77 LECAVCLTRF---EPTEVLRLLPKCKHAFHVECVDTWL-DSHSTCPLCRYRVD 125 (381)
Q Consensus 77 ~~C~ICle~~---~~~~~v~~lp~CgH~FH~~CI~~Wl-~~~~tCPlCR~~v~ 125 (381)
..|.||-+++ .+++.-+.+..|+--.|..|.+-=- +.++.||.|+..+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3799999996 4445555555688889999985322 33778999999886
No 139
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=56.91 E-value=5.4 Score=39.32 Aligned_cols=50 Identities=26% Similarity=0.544 Sum_probs=35.2
Q ss_pred cccccccccccCCcceeec---CCCCceeChhcHHHHhcC---------CCCCCccccccCC
Q 016846 77 LECAVCLTRFEPTEVLRLL---PKCKHAFHVECVDTWLDS---------HSTCPLCRYRVDP 126 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~l---p~CgH~FH~~CI~~Wl~~---------~~tCPlCR~~v~~ 126 (381)
.+|-+|.+++...+..+.. |.|.-.+|..|+..-+.. ...||.|++.+.-
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~w 244 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLSW 244 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceeeH
Confidence 4899999999555543322 258888999999984322 3469999886543
No 140
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=55.82 E-value=9.5 Score=27.18 Aligned_cols=44 Identities=27% Similarity=0.491 Sum_probs=29.8
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhc------CCCCCCcccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD------SHSTCPLCRY 122 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~------~~~tCPlCR~ 122 (381)
.|.||...-... .++..-.|+..||..|+..-.. ....||.|+.
T Consensus 1 ~C~vC~~~~~~~-~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDG-DMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTS-SEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCC-CeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 388999844434 4444556999999999975432 2457888853
No 141
>PLN02400 cellulose synthase
Probab=55.46 E-value=12 Score=43.55 Aligned_cols=49 Identities=20% Similarity=0.488 Sum_probs=34.8
Q ss_pred ccccccccccc---CCcceeecCCCCceeChhcHHH-HhcCCCCCCccccccC
Q 016846 77 LECAVCLTRFE---PTEVLRLLPKCKHAFHVECVDT-WLDSHSTCPLCRYRVD 125 (381)
Q Consensus 77 ~~C~ICle~~~---~~~~v~~lp~CgH~FH~~CI~~-Wl~~~~tCPlCR~~v~ 125 (381)
..|.||-+++. +++.-+.+-.|+--.|..|.+- .-+.++.||.|+..+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 37999999873 3344444456888899999842 2234778999998875
No 142
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.05 E-value=4.5 Score=45.11 Aligned_cols=44 Identities=20% Similarity=0.496 Sum_probs=31.4
Q ss_pred cccccccccccCC----cceeecCCCCceeChhcHHHHhcCCCCCCcccc
Q 016846 77 LECAVCLTRFEPT----EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRY 122 (381)
Q Consensus 77 ~~C~ICle~~~~~----~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~ 122 (381)
..|.-|.+..-.. +.+.++. |+|.||..|+..-..++. |-.|-.
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~~~ 832 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIESG 832 (846)
T ss_pred hhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChhhc
Confidence 4799999986533 3556665 999999999987655544 666643
No 143
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.03 E-value=5.5 Score=41.66 Aligned_cols=54 Identities=22% Similarity=0.571 Sum_probs=37.7
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC--------CCC--CccccccCCCccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH--------STC--PLCRYRVDPEDIL 130 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~--------~tC--PlCR~~v~~~~~~ 130 (381)
....+|-||.+.+.. .+..+. |+|.||..|....+..+ -+| +-|...+....+.
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~ 131 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVE 131 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceee
Confidence 345689999999865 344555 99999999999988641 235 4576666555443
No 144
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=54.43 E-value=12 Score=24.47 Aligned_cols=36 Identities=25% Similarity=0.533 Sum_probs=23.6
Q ss_pred cccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124 (381)
Q Consensus 79 C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v 124 (381)
|..|.+.+...+..... =+..||..|+ .|..|..++
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccCC--------CCcccCCcC
Confidence 78888888765333222 3677888773 477776655
No 145
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=53.48 E-value=11 Score=25.84 Aligned_cols=27 Identities=26% Similarity=0.637 Sum_probs=17.2
Q ss_pred cccccccccccCCcc-------eeecCCCCceeC
Q 016846 77 LECAVCLTRFEPTEV-------LRLLPKCKHAFH 103 (381)
Q Consensus 77 ~~C~ICle~~~~~~~-------v~~lp~CgH~FH 103 (381)
.+|+=|...|..++. ....++|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 368888888866653 123445778774
No 146
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=53.32 E-value=6.8 Score=28.87 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=16.3
Q ss_pred cceeecCCCCceeChhcHHHH
Q 016846 90 EVLRLLPKCKHAFHVECVDTW 110 (381)
Q Consensus 90 ~~v~~lp~CgH~FH~~CI~~W 110 (381)
...+..+.|+|.||..|...|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 344556569999999999888
No 147
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=53.17 E-value=12 Score=37.88 Aligned_cols=52 Identities=25% Similarity=0.575 Sum_probs=34.0
Q ss_pred Cccccccccccc---------CC-------cceeecCCCCceeChhcHHHHhcC---------CCCCCccccccCCCc
Q 016846 76 GLECAVCLTRFE---------PT-------EVLRLLPKCKHAFHVECVDTWLDS---------HSTCPLCRYRVDPED 128 (381)
Q Consensus 76 ~~~C~ICle~~~---------~~-------~~v~~lp~CgH~FH~~CI~~Wl~~---------~~tCPlCR~~v~~~~ 128 (381)
+.+|++|+..-. .+ -.-...| |||+--.+-..-|-+. +..||.|-..+..+.
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 568999987521 00 0112456 9998877777778643 457999988776443
No 148
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=50.23 E-value=16 Score=33.32 Aligned_cols=7 Identities=43% Similarity=1.042 Sum_probs=2.9
Q ss_pred ehhhHHH
Q 016846 3 VVVGVLT 9 (381)
Q Consensus 3 iII~Vl~ 9 (381)
||++|++
T Consensus 80 iivgvi~ 86 (179)
T PF13908_consen 80 IIVGVIC 86 (179)
T ss_pred eeeehhh
Confidence 3444444
No 149
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.46 E-value=7.4 Score=39.03 Aligned_cols=51 Identities=24% Similarity=0.589 Sum_probs=40.9
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
..+...|-||...+.-+... ..|.|.|+..|...|......||.|+....+
T Consensus 102 ~~~~~~~~~~~g~l~vpt~~---qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTRI---QGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred cCCccceeeeeeeEEecccc---cCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 44556899999988776443 2499999999999999999999999876643
No 150
>PF15102 TMEM154: TMEM154 protein family
Probab=48.92 E-value=11 Score=34.03 Aligned_cols=9 Identities=44% Similarity=1.058 Sum_probs=5.0
Q ss_pred hcHHHHhcC
Q 016846 105 ECVDTWLDS 113 (381)
Q Consensus 105 ~CI~~Wl~~ 113 (381)
.=|++|...
T Consensus 128 eeldkwm~s 136 (146)
T PF15102_consen 128 EELDKWMNS 136 (146)
T ss_pred HHHHhHHHh
Confidence 446667643
No 151
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=46.30 E-value=4.5 Score=39.76 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=21.2
Q ss_pred cccccccccccCCcceeec-CCCCceeChhcHHHHhcCCCCCCcccc
Q 016846 77 LECAVCLTRFEPTEVLRLL-PKCKHAFHVECVDTWLDSHSTCPLCRY 122 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~l-p~CgH~FH~~CI~~Wl~~~~tCPlCR~ 122 (381)
..||||-..-........- ..-.|.+|.-|-..|--....||.|-.
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 4799998774322111000 013577899999999888889999954
No 152
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=45.77 E-value=23 Score=27.04 Aligned_cols=44 Identities=25% Similarity=0.672 Sum_probs=31.3
Q ss_pred ccccccccccCCc-ceeecCCCC--ceeChhcHHHHhcCCCCCCccccccCC
Q 016846 78 ECAVCLTRFEPTE-VLRLLPKCK--HAFHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 78 ~C~ICle~~~~~~-~v~~lp~Cg--H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
.|-.|-.++.... ...+ |. ..||.+|.+..| +..||.|-..+..
T Consensus 7 nCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 4777877776554 2333 55 459999999866 6789999877643
No 153
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.89 E-value=17 Score=35.69 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=27.2
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD 112 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~ 112 (381)
-..|..||.++.++ +++| =||+|+.+||.+.+.
T Consensus 43 FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDP---VITP-DGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccCC---ccCC-CCeeeeHHHHHHHHH
Confidence 34799999999887 4555 799999999999864
No 154
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=44.58 E-value=13 Score=37.64 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=34.7
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC---CCCCccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH---STCPLCR 121 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~---~tCPlCR 121 (381)
-.-+.||+--+.-.+......+. |||+.-.+-++..-+.. ..||.|=
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred cceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 34568998777666666666776 99999999988865542 3599994
No 155
>PLN02195 cellulose synthase A
Probab=44.22 E-value=23 Score=40.85 Aligned_cols=51 Identities=20% Similarity=0.355 Sum_probs=36.1
Q ss_pred cccccccccccC---CcceeecCCCCceeChhcHHHH-hcCCCCCCccccccCCC
Q 016846 77 LECAVCLTRFEP---TEVLRLLPKCKHAFHVECVDTW-LDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 77 ~~C~ICle~~~~---~~~v~~lp~CgH~FH~~CI~~W-l~~~~tCPlCR~~v~~~ 127 (381)
..|.||-+.+.. ++.-+.+-.|+--.|..|.+-= -+.++.||.|+..+..+
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~~ 61 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDAE 61 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccccc
Confidence 379999997643 3444455568888999998421 23377899999988743
No 156
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=42.26 E-value=15 Score=30.78 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=11.4
Q ss_pred eehhhHHHHHHHHHHHHHHHHH
Q 016846 2 AVVVGVLTTMFSMTFLLLLYAK 23 (381)
Q Consensus 2 aiII~Vl~iif~l~~llliyik 23 (381)
+++|++++++.++++++++|.+
T Consensus 63 iili~lls~v~IlVily~IyYF 84 (101)
T PF06024_consen 63 IILISLLSFVCILVILYAIYYF 84 (101)
T ss_pred chHHHHHHHHHHHHHHhhheEE
Confidence 3455555555555555555544
No 158
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=42.03 E-value=16 Score=40.82 Aligned_cols=46 Identities=33% Similarity=0.739 Sum_probs=27.3
Q ss_pred CCcccccccccccC---------CcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846 75 DGLECAVCLTRFEP---------TEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124 (381)
Q Consensus 75 ~~~~C~ICle~~~~---------~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v 124 (381)
.+..|+-|...|-. ....-.+|.|+|.-|..=|.+ ...||+|...+
T Consensus 1130 ~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1130 YDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred cCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 34566666665511 012335566888877665433 56799997654
No 159
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=41.20 E-value=8.9 Score=39.81 Aligned_cols=50 Identities=22% Similarity=0.549 Sum_probs=0.0
Q ss_pred Cccccccccccc--------------C--CcceeecCCCCceeChhcHHHHhcC---------CCCCCccccccCC
Q 016846 76 GLECAVCLTRFE--------------P--TEVLRLLPKCKHAFHVECVDTWLDS---------HSTCPLCRYRVDP 126 (381)
Q Consensus 76 ~~~C~ICle~~~--------------~--~~~v~~lp~CgH~FH~~CI~~Wl~~---------~~tCPlCR~~v~~ 126 (381)
..+|++|+..-. + +-.....| |||+--.+...-|-+. +..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 568999996520 0 01223566 9999888888889643 3579999888864
No 160
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=41.07 E-value=17 Score=26.46 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=24.4
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHh
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL 111 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl 111 (381)
.|.+|-..|..-..-.....||++||..|.....
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 6999988886544333444699999999976543
No 161
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=40.45 E-value=29 Score=24.95 Aligned_cols=40 Identities=28% Similarity=0.535 Sum_probs=29.1
Q ss_pred cccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 79 C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
|+.|...+...+.+... -+..||..|+ .|-.|..++....
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEcccc--------ccCCCCCccCCCe
Confidence 77888888766554322 6888998883 5889988887665
No 162
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=40.25 E-value=24 Score=25.35 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=14.1
Q ss_pred ehhhHHHHHHHHHHHHHHHHHhhcCC
Q 016846 3 VVVGVLTTMFSMTFLLLLYAKHCKRG 28 (381)
Q Consensus 3 iII~Vl~iif~l~~llliyik~c~rr 28 (381)
+++.++.++...++.+++|-|+..++
T Consensus 12 lVF~lVglv~i~iva~~iYRKw~aRk 37 (43)
T PF08114_consen 12 LVFCLVGLVGIGIVALFIYRKWQARK 37 (43)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445556667776665543
No 163
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=39.46 E-value=10 Score=29.66 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=0.0
Q ss_pred eehhhHHHHHHHHHHHHHHHH
Q 016846 2 AVVVGVLTTMFSMTFLLLLYA 22 (381)
Q Consensus 2 aiII~Vl~iif~l~~llliyi 22 (381)
++|.+++++++++++++++++
T Consensus 13 avIaG~Vvgll~ailLIlf~i 33 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLILFLI 33 (64)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555544444444444333
No 164
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=37.62 E-value=13 Score=29.65 Aligned_cols=39 Identities=21% Similarity=0.443 Sum_probs=21.0
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v 124 (381)
..||.|..++.... +|.+|..|-.. +.....||-|..++
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHH
Confidence 36999988865432 56667777554 34456799998776
No 165
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=36.42 E-value=28 Score=40.38 Aligned_cols=50 Identities=18% Similarity=0.391 Sum_probs=35.5
Q ss_pred CcccccccccccC---CcceeecCCCCceeChhcHHHH-hcCCCCCCccccccC
Q 016846 76 GLECAVCLTRFEP---TEVLRLLPKCKHAFHVECVDTW-LDSHSTCPLCRYRVD 125 (381)
Q Consensus 76 ~~~C~ICle~~~~---~~~v~~lp~CgH~FH~~CI~~W-l~~~~tCPlCR~~v~ 125 (381)
...|.||-+++.. ++.-+.+..|+--.|..|.+-= -+.++.||.|+..+.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3479999998743 3444455568888999998432 234778999998875
No 166
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=35.04 E-value=38 Score=28.70 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=19.3
Q ss_pred CceeChhcHHHHhcC---------CCCCCccccc
Q 016846 99 KHAFHVECVDTWLDS---------HSTCPLCRYR 123 (381)
Q Consensus 99 gH~FH~~CI~~Wl~~---------~~tCPlCR~~ 123 (381)
.=.||..||..++.. +-.||.||.-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 667999999888743 3469999873
No 167
>PHA02650 hypothetical protein; Provisional
Probab=34.75 E-value=45 Score=27.16 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q 016846 6 GVLTTMFSMTFLLLLYAKHCKR 27 (381)
Q Consensus 6 ~Vl~iif~l~~llliyik~c~r 27 (381)
.++++++++++++++|.|-.++
T Consensus 54 i~i~~v~i~~l~~flYLK~~~r 75 (81)
T PHA02650 54 FLIFSLIIVALFSFFVFKGYTR 75 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3344555556666777765444
No 168
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=34.20 E-value=14 Score=35.37 Aligned_cols=15 Identities=13% Similarity=0.479 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 016846 7 VLTTMFSMTFLLLLY 21 (381)
Q Consensus 7 Vl~iif~l~~llliy 21 (381)
+++++++|+++++.|
T Consensus 18 iaI~IV~lLIiiva~ 32 (217)
T PF07423_consen 18 IAIGIVSLLIIIVAY 32 (217)
T ss_pred HHHHHHHHHHHHHhh
Confidence 333333333333333
No 169
>PHA02902 putative IMV membrane protein; Provisional
Probab=34.00 E-value=1.4e+02 Score=23.49 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=4.7
Q ss_pred CCCHHHHhhC
Q 016846 53 GIDRTVIESL 62 (381)
Q Consensus 53 gl~~~~i~~L 62 (381)
.+..+++++|
T Consensus 53 ~lTpDQirAl 62 (70)
T PHA02902 53 SLTPDQIKAL 62 (70)
T ss_pred cCCHHHHHHH
Confidence 3444555443
No 170
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=33.86 E-value=29 Score=35.23 Aligned_cols=44 Identities=7% Similarity=-0.102 Sum_probs=31.3
Q ss_pred CCcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCcccccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRV 124 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v 124 (381)
...+|..|-+.+-. ....+ |+|. ||..|.. +....+||+|..-+
T Consensus 342 s~~~~~~~~~~~~s---t~~~~-~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLS---TIWSG-GNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCceee---eEeec-CCcccChhhhhh--cccCCccccccccc
Confidence 34578888766432 34556 9987 8888876 56678999997643
No 171
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=33.24 E-value=5.5 Score=29.32 Aligned_cols=40 Identities=25% Similarity=0.598 Sum_probs=21.0
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v 124 (381)
.+.||.|-+.|... .| +.|+.-....+ .....||+|...+
T Consensus 2 ~f~CP~C~~~~~~~----~L--~~H~~~~H~~~---~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSES----SL--VEHCEDEHRSE---SKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHH----HH--HHHHHhHCcCC---CCCccCCCchhhh
Confidence 46799998865432 12 34432111110 1245799997643
No 172
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=33.02 E-value=14 Score=33.57 Aligned_cols=12 Identities=42% Similarity=0.492 Sum_probs=5.3
Q ss_pred eehhhHHHHHHH
Q 016846 2 AVVVGVLTTMFS 13 (381)
Q Consensus 2 aiII~Vl~iif~ 13 (381)
.+++||...+++
T Consensus 53 GvVVGVGg~ill 64 (154)
T PF04478_consen 53 GVVVGVGGPILL 64 (154)
T ss_pred EEEecccHHHHH
Confidence 344554444443
No 173
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.48 E-value=18 Score=37.94 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=26.2
Q ss_pred ccccccccccCCccee----ecCCCCceeChhcHHHHhcC
Q 016846 78 ECAVCLTRFEPTEVLR----LLPKCKHAFHVECVDTWLDS 113 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~----~lp~CgH~FH~~CI~~Wl~~ 113 (381)
.||.|.-.++.....- ..+.|+|.||+.|+..|-..
T Consensus 228 ~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 228 ECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred cCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 5999999887765221 11139999999998888655
No 174
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=32.46 E-value=23 Score=34.80 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=31.2
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCC--CCCCcc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH--STCPLC 120 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPlC 120 (381)
+..|||-...+..+ + +-.+|||+|-.+-|...+... -.||+=
T Consensus 176 s~rdPis~~~I~nP--v-iSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--V-ISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhch--h-hhcCcCcchhhhhHHHHhccCceeecccc
Confidence 34799988888776 2 233699999999999988763 348864
No 175
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=32.11 E-value=21 Score=28.19 Aligned_cols=11 Identities=27% Similarity=0.981 Sum_probs=8.3
Q ss_pred eChhcHHHHhc
Q 016846 102 FHVECVDTWLD 112 (381)
Q Consensus 102 FH~~CI~~Wl~ 112 (381)
||..||.+|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 176
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=31.81 E-value=45 Score=28.40 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=15.2
Q ss_pred ehhhHHHHHHHHHHHHHHHHHh
Q 016846 3 VVVGVLTTMFSMTFLLLLYAKH 24 (381)
Q Consensus 3 iII~Vl~iif~l~~llliyik~ 24 (381)
+++||+++++++-+|+++.+||
T Consensus 19 ~LVGVv~~al~~SlLIalaaKC 40 (102)
T PF15176_consen 19 FLVGVVVTALVTSLLIALAAKC 40 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777777776666664
No 177
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.37 E-value=34 Score=39.69 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=32.7
Q ss_pred CcccccccccccCCcceeecCCCC-----ceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCK-----HAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~Cg-----H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
...|+=|-... ....+|.|| ..||..| .+......||.|...+.+..
T Consensus 626 ~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~~s 677 (1121)
T PRK04023 626 RRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTPYS 677 (1121)
T ss_pred CccCCCCCCcC----CcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCccc
Confidence 44799998774 224677898 4599999 33344567999988776543
No 178
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=31.24 E-value=71 Score=35.35 Aligned_cols=27 Identities=26% Similarity=0.744 Sum_probs=14.3
Q ss_pred ehhhHHHHHHHHH-HHHHHHHHhhcCCC
Q 016846 3 VVVGVLTTMFSMT-FLLLLYAKHCKRGN 29 (381)
Q Consensus 3 iII~Vl~iif~l~-~llliyik~c~rr~ 29 (381)
||+||++-+++++ +++++|.++|++..
T Consensus 271 II~gVlvPv~vV~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 271 IIAGVLVPVLVVLLIIIILYWKLCRKNK 298 (684)
T ss_pred EEehHhHHHHHHHHHHHHHHHHHhcccc
Confidence 4566655555444 44455556665543
No 179
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=31.20 E-value=38 Score=24.88 Aligned_cols=25 Identities=32% Similarity=0.808 Sum_probs=15.0
Q ss_pred cCCCCceeChhcHHHHhcCCCCCCcc
Q 016846 95 LPKCKHAFHVECVDTWLDSHSTCPLC 120 (381)
Q Consensus 95 lp~CgH~FH~~CI~~Wl~~~~tCPlC 120 (381)
.+.|||.|-.. +..-......||.|
T Consensus 31 C~~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 31 CPKCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCCCeeEcc-HhhhccCCCCCCCC
Confidence 33577877544 33323456779988
No 180
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=30.70 E-value=28 Score=33.47 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=18.7
Q ss_pred cccccccccccCCcceeecCCCCceeC
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFH 103 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH 103 (381)
+.||+|...+...+....++ ++|.|-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~fd 28 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQFD 28 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCCc
Confidence 47999999997655544555 678774
No 181
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=30.25 E-value=17 Score=36.31 Aligned_cols=25 Identities=4% Similarity=0.016 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcCC
Q 016846 4 VVGVLTTMFSMTFLLLLYAKHCKRG 28 (381)
Q Consensus 4 II~Vl~iif~l~~llliyik~c~rr 28 (381)
|++|++++++|+..++++++|+++|
T Consensus 150 IpaVVI~~iLLIA~iIa~icyrrkR 174 (290)
T PF05454_consen 150 IPAVVIAAILLIAGIIACICYRRKR 174 (290)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4444444444444444444444443
No 182
>PHA02844 putative transmembrane protein; Provisional
Probab=29.81 E-value=54 Score=26.41 Aligned_cols=19 Identities=32% Similarity=0.446 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 016846 7 VLTTMFSMTFLLLLYAKHC 25 (381)
Q Consensus 7 Vl~iif~l~~llliyik~c 25 (381)
++++++++++++++|.|-.
T Consensus 54 ~i~~v~~~~~~~flYLK~~ 72 (75)
T PHA02844 54 TIIFVVFATFLTFLYLKAV 72 (75)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 3444445555566666643
No 183
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=29.71 E-value=82 Score=23.83 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=21.0
Q ss_pred CcccccccccccC--CcceeecCCCCceeChhcH
Q 016846 76 GLECAVCLTRFEP--TEVLRLLPKCKHAFHVECV 107 (381)
Q Consensus 76 ~~~C~ICle~~~~--~~~v~~lp~CgH~FH~~CI 107 (381)
.-.|+.|-..... .......|.||+.+|.+-.
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~n 61 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVN 61 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEECcHHH
Confidence 3479999887766 3445556667777776643
No 184
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=29.52 E-value=21 Score=35.88 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=30.0
Q ss_pred cccccccccccCCcceeec---CCCCceeChhcHHHHhcCCCCCCcccc
Q 016846 77 LECAVCLTRFEPTEVLRLL---PKCKHAFHVECVDTWLDSHSTCPLCRY 122 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~l---p~CgH~FH~~CI~~Wl~~~~tCPlCR~ 122 (381)
..||||-..-.... ++.. ..=.|.+|..|-..|-.....||.|-.
T Consensus 185 ~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 185 TLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 37999987642221 1110 112366888899999888889999965
No 185
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=29.37 E-value=40 Score=29.22 Aligned_cols=28 Identities=18% Similarity=0.466 Sum_probs=18.5
Q ss_pred cCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 95 LPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 95 lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
+|.|+|. .+-+.+...|+.|++++..+.
T Consensus 72 CP~C~K~------TKmLGr~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 72 CPNCGKQ------TKMLGRVDACMHCKEPLTLDP 99 (114)
T ss_pred CCCCCCh------HhhhchhhccCcCCCcCccCc
Confidence 3456663 244556678999999986544
No 186
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=28.95 E-value=44 Score=28.56 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=28.2
Q ss_pred CCcccccccccccCCc-ceeecCCCCceeChhcHHHHhcCC--CCCCcccc
Q 016846 75 DGLECAVCLTRFEPTE-VLRLLPKCKHAFHVECVDTWLDSH--STCPLCRY 122 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~-~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPlCR~ 122 (381)
+...|.+|..+|..-. .-.....|+|.+|..|-.. .... -.|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 3458999998863321 1234456999999999655 1111 24888865
No 187
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.60 E-value=39 Score=29.59 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcCCC
Q 016846 4 VVGVLTTMFSMTFLLLLYAKHCKRGN 29 (381)
Q Consensus 4 II~Vl~iif~l~~llliyik~c~rr~ 29 (381)
|++|+++++..++++++++-||.+|+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555543
No 188
>PRK09458 pspB phage shock protein B; Provisional
Probab=28.19 E-value=1.1e+02 Score=24.62 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=14.7
Q ss_pred ehhhHHHHHHHHHHHHHHHHHhhcC
Q 016846 3 VVVGVLTTMFSMTFLLLLYAKHCKR 27 (381)
Q Consensus 3 iII~Vl~iif~l~~llliyik~c~r 27 (381)
+++++.+++|++++..+..+.+++.
T Consensus 4 ~fl~~PliiF~ifVaPiWL~LHY~s 28 (75)
T PRK09458 4 LFLAIPLTIFVLFVAPIWLWLHYRS 28 (75)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhhcc
Confidence 4566666666666665555555444
No 189
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=28.17 E-value=1.1e+02 Score=25.50 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC
Q 016846 8 LTTMFSMTFLLLLYAKHCKRGN 29 (381)
Q Consensus 8 l~iif~l~~llliyik~c~rr~ 29 (381)
++++.++++++++|..+|+.|.
T Consensus 38 lvI~~iFil~VilwfvCC~kRk 59 (94)
T PF05393_consen 38 LVICGIFILLVILWFVCCKKRK 59 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333444555555665544
No 190
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=27.99 E-value=71 Score=21.58 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 016846 4 VVGVLTTMFSMTFLLLLYAK 23 (381)
Q Consensus 4 II~Vl~iif~l~~llliyik 23 (381)
+...+.+++-..|++++|+|
T Consensus 9 iAtaLfi~iPt~FLiilyvq 28 (31)
T PF05151_consen 9 IATALFILIPTAFLIILYVQ 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhheEee
Confidence 34445555566677777765
No 191
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=27.95 E-value=18 Score=26.42 Aligned_cols=33 Identities=24% Similarity=0.574 Sum_probs=18.7
Q ss_pred cccc--ccccccCCcce----eecCCCCceeChhcHHHH
Q 016846 78 ECAV--CLTRFEPTEVL----RLLPKCKHAFHVECVDTW 110 (381)
Q Consensus 78 ~C~I--Cle~~~~~~~v----~~lp~CgH~FH~~CI~~W 110 (381)
-|+- |-..+...... +..+.|++.||..|-..|
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 5766 76666444321 445569999999998877
No 192
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=26.76 E-value=74 Score=30.63 Aligned_cols=26 Identities=4% Similarity=0.590 Sum_probs=11.3
Q ss_pred ehhhHHHHHHHH--HHHHHHHHHhhcCC
Q 016846 3 VVVGVLTTMFSM--TFLLLLYAKHCKRG 28 (381)
Q Consensus 3 iII~Vl~iif~l--~~llliyik~c~rr 28 (381)
|+|||+.+++.+ ++++.+++++|+..
T Consensus 39 I~iaiVAG~~tVILVI~i~v~vR~CRq~ 66 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLVRYCRQS 66 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHHHHHhhc
Confidence 444444433332 23333344666643
No 193
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.70 E-value=26 Score=24.63 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=15.1
Q ss_pred CCCceeChhcHHHHhcCCCCCCcccc
Q 016846 97 KCKHAFHVECVDTWLDSHSTCPLCRY 122 (381)
Q Consensus 97 ~CgH~FH~~CI~~Wl~~~~tCPlCR~ 122 (381)
+|||.|-...-..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 58888865432111 23457999976
No 194
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=26.54 E-value=96 Score=30.20 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHh
Q 016846 4 VVGVLTTMFSMTFLLLLYAKH 24 (381)
Q Consensus 4 II~Vl~iif~l~~llliyik~ 24 (381)
+|+++++.++++.++.+|..|
T Consensus 194 vIaliVitl~vf~LvgLyr~C 214 (259)
T PF07010_consen 194 VIALIVITLSVFTLVGLYRMC 214 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333344333
No 195
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=25.97 E-value=65 Score=25.89 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=5.0
Q ss_pred hhHHHHHHHHHHH
Q 016846 5 VGVLTTMFSMTFL 17 (381)
Q Consensus 5 I~Vl~iif~l~~l 17 (381)
+++.+++|++++.
T Consensus 6 l~~plivf~ifVa 18 (75)
T PF06667_consen 6 LFVPLIVFMIFVA 18 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444433333
No 196
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=25.96 E-value=50 Score=21.94 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=12.5
Q ss_pred CCCceeChhcHHHHhcCCCCCCcccc
Q 016846 97 KCKHAFHVECVDTWLDSHSTCPLCRY 122 (381)
Q Consensus 97 ~CgH~FH~~CI~~Wl~~~~tCPlCR~ 122 (381)
.|||++-..- ....||+|..
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCC
Confidence 3777665432 3447999965
No 197
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=25.86 E-value=24 Score=37.50 Aligned_cols=50 Identities=22% Similarity=0.517 Sum_probs=32.2
Q ss_pred CCCccccccccc-ccCCcceeecCCCCceeChhcHHHHhcC--------CCCCCccccc
Q 016846 74 KDGLECAVCLTR-FEPTEVLRLLPKCKHAFHVECVDTWLDS--------HSTCPLCRYR 123 (381)
Q Consensus 74 ~~~~~C~ICle~-~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--------~~tCPlCR~~ 123 (381)
.-+..|.+|+.- .-..+.+..+-+|+-.||..|....... ...|=+|...
T Consensus 166 ~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 166 KVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred cccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 345579999853 3333345555568888999998765321 2359888653
No 198
>PRK05978 hypothetical protein; Provisional
Probab=25.71 E-value=42 Score=30.36 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=18.5
Q ss_pred CceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 99 KHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 99 gH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
|+.|+ .+|+.+..||.|-..+...
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccC
Confidence 36675 6788899999998877543
No 199
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=25.67 E-value=32 Score=34.67 Aligned_cols=46 Identities=15% Similarity=0.306 Sum_probs=30.4
Q ss_pred CcccccccccccCCcceee--cCCCCceeChhcHHHHhcCCCCCCcccc
Q 016846 76 GLECAVCLTRFEPTEVLRL--LPKCKHAFHVECVDTWLDSHSTCPLCRY 122 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~--lp~CgH~FH~~CI~~Wl~~~~tCPlCR~ 122 (381)
...||||-..-.... +.. -..=.|.+|..|-..|-.....||.|-.
T Consensus 187 ~~~CPvCGs~P~~s~-v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSSV-VQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhhe-eeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 347999987642221 111 0112366888899999888889999964
No 200
>PHA03054 IMV membrane protein; Provisional
Probab=25.40 E-value=74 Score=25.42 Aligned_cols=16 Identities=25% Similarity=0.523 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 016846 8 LTTMFSMTFLLLLYAK 23 (381)
Q Consensus 8 l~iif~l~~llliyik 23 (381)
+++++++++++++|.|
T Consensus 55 l~~v~~~~l~~flYLK 70 (72)
T PHA03054 55 FFIVLILLLLIYLYLK 70 (72)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444444555555554
No 201
>PHA02819 hypothetical protein; Provisional
Probab=25.37 E-value=75 Score=25.35 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016846 8 LTTMFSMTFLLLLYAKH 24 (381)
Q Consensus 8 l~iif~l~~llliyik~ 24 (381)
+++++++++++++|.|-
T Consensus 53 l~~~~~~~~~~flYLK~ 69 (71)
T PHA02819 53 LVTIVFVIIFIIFYLKV 69 (71)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444555555666553
No 202
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.06 E-value=46 Score=36.96 Aligned_cols=46 Identities=26% Similarity=0.566 Sum_probs=32.6
Q ss_pred ccccccccccCCcceeecCCCCc-eeChhcHHHHhc--C----CCCCCccccccCCC
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKH-AFHVECVDTWLD--S----HSTCPLCRYRVDPE 127 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH-~FH~~CI~~Wl~--~----~~tCPlCR~~v~~~ 127 (381)
.|+||-..+.- . ....||| ..|..|...... . ...||+|+..+...
T Consensus 2 ~c~ic~~s~~~---~-~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPDF---V-GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCccc---c-ccccccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 59999877533 2 3446999 799999987642 2 44689999977543
No 203
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=24.96 E-value=67 Score=25.74 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 016846 13 SMTFLLLLYAK 23 (381)
Q Consensus 13 ~l~~llliyik 23 (381)
++++++++|.|
T Consensus 60 ii~~l~flYLK 70 (72)
T PF12575_consen 60 IIVLLTFLYLK 70 (72)
T ss_pred HHHHHHHHHhc
Confidence 33344455544
No 204
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=24.55 E-value=47 Score=27.48 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=21.2
Q ss_pred CCcccccccccccCCccee-ecCCCCceeChhcHHH
Q 016846 75 DGLECAVCLTRFEPTEVLR-LLPKCKHAFHVECVDT 109 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~-~lp~CgH~FH~~CI~~ 109 (381)
....|.||.... +..+. .-+.|...||..|...
T Consensus 54 ~~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSG--GACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHH
Confidence 345899999872 32221 1113778999999866
No 205
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=24.27 E-value=43 Score=34.82 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=19.0
Q ss_pred eehhhHHHHHHHHHHHHHHHHHhhcC
Q 016846 2 AVVVGVLTTMFSMTFLLLLYAKHCKR 27 (381)
Q Consensus 2 aiII~Vl~iif~l~~llliyik~c~r 27 (381)
++.++|.+++++++++++.|+.||++
T Consensus 286 ~vtl~iPl~i~llL~llLs~Imc~rR 311 (386)
T PF05510_consen 286 LVTLAIPLIIALLLLLLLSYIMCCRR 311 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheech
Confidence 35566777777777777888877776
No 206
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=24.16 E-value=62 Score=28.65 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=10.3
Q ss_pred CCCCccccccCCC
Q 016846 115 STCPLCRYRVDPE 127 (381)
Q Consensus 115 ~tCPlCR~~v~~~ 127 (381)
..||.|...+...
T Consensus 124 f~Cp~Cg~~l~~~ 136 (147)
T smart00531 124 FTCPRCGEELEED 136 (147)
T ss_pred EECCCCCCEEEEc
Confidence 6799999988543
No 207
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=23.41 E-value=33 Score=38.82 Aligned_cols=33 Identities=21% Similarity=0.579 Sum_probs=25.2
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHh
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL 111 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl 111 (381)
..|-.|...... ..-+++.|++.||..|+..|.
T Consensus 230 ~mC~~C~~tlfn--~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 230 EMCDRCETTLFN--IHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred hhhhhhcccccc--eeEEccccCCeeeecchhhcc
Confidence 468888776532 234566799999999999995
No 208
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.39 E-value=22 Score=31.85 Aligned_cols=45 Identities=31% Similarity=0.695 Sum_probs=25.5
Q ss_pred CCCCCccccccccc-ccCCcceeecCCCCceeC-------hhcHHHH-hcCCC---CCCcccccc
Q 016846 72 GHKDGLECAVCLTR-FEPTEVLRLLPKCKHAFH-------VECVDTW-LDSHS---TCPLCRYRV 124 (381)
Q Consensus 72 ~~~~~~~C~ICle~-~~~~~~v~~lp~CgH~FH-------~~CI~~W-l~~~~---tCPlCR~~v 124 (381)
+..++..|.||+.. |.++ |||.-| ..|--+- |..+. .|-+|+...
T Consensus 61 Gv~ddatC~IC~KTKFADG--------~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFADG--------CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred ccCcCcchhhhhhcccccc--------cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 34566799999985 4444 777533 3332221 22222 488887654
No 209
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=23.36 E-value=56 Score=21.06 Aligned_cols=29 Identities=21% Similarity=0.549 Sum_probs=10.4
Q ss_pred ccccccccccCCcceeecCCCCceeChhcH
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECV 107 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI 107 (381)
.|.+|.+.... ......+.|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 58889888765 233344459999999885
No 210
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.28 E-value=1.2e+02 Score=24.34 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=16.2
Q ss_pred eehhhHHHHHHHHHHHHHHHHHhh
Q 016846 2 AVVVGVLTTMFSMTFLLLLYAKHC 25 (381)
Q Consensus 2 aiII~Vl~iif~l~~llliyik~c 25 (381)
++.++|+++++..+.+++.|...+
T Consensus 7 ~~plivf~ifVap~WL~lHY~sk~ 30 (75)
T PF06667_consen 7 FVPLIVFMIFVAPIWLILHYRSKW 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666777777777777776553
No 211
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=23.25 E-value=27 Score=36.35 Aligned_cols=45 Identities=29% Similarity=0.543 Sum_probs=0.0
Q ss_pred CcccccccccccCCc-----------ceeecCCCCceeChhcHHHHhcC------CCCCCcccccc
Q 016846 76 GLECAVCLTRFEPTE-----------VLRLLPKCKHAFHVECVDTWLDS------HSTCPLCRYRV 124 (381)
Q Consensus 76 ~~~C~ICle~~~~~~-----------~v~~lp~CgH~FH~~CI~~Wl~~------~~tCPlCR~~v 124 (381)
...||+=|..+.-+. .-+.+ +|||++-+ ..|-.. ..+||+||..-
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl-~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYL-NCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeec-cccceeee---cccccccccccccccCCCccccC
Confidence 347888877764432 22345 49998754 356432 45799998754
No 212
>PF15102 TMEM154: TMEM154 protein family
Probab=23.16 E-value=40 Score=30.50 Aligned_cols=7 Identities=29% Similarity=0.102 Sum_probs=2.7
Q ss_pred HHhhcCC
Q 016846 22 AKHCKRG 28 (381)
Q Consensus 22 ik~c~rr 28 (381)
+.+++|+
T Consensus 79 v~~~kRk 85 (146)
T PF15102_consen 79 VIYYKRK 85 (146)
T ss_pred eeEEeec
Confidence 3333443
No 213
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=23.06 E-value=56 Score=27.82 Aligned_cols=32 Identities=19% Similarity=0.409 Sum_probs=26.6
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHh
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL 111 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl 111 (381)
.|.||-+++..++....+.+ -..|+.|+..=.
T Consensus 4 kC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK--GPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecC--CcEeHHHHHHHH
Confidence 69999999999988777763 669999998754
No 214
>PHA03030 hypothetical protein; Provisional
Probab=22.75 E-value=72 Score=27.36 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhcCCCC
Q 016846 11 MFSMTFLLLLYAKHCKRGNS 30 (381)
Q Consensus 11 if~l~~llliyik~c~rr~~ 30 (381)
++++++++++|++..++.+.
T Consensus 10 ~lfifl~iffYI~~IkRDnf 29 (122)
T PHA03030 10 FLFIFLFIFFYIRIIKRDNF 29 (122)
T ss_pred HHHHHHHHHHHheeeecccc
Confidence 33344445666666666554
No 215
>PHA03164 hypothetical protein; Provisional
Probab=22.53 E-value=86 Score=25.49 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHh
Q 016846 4 VVGVLTTMFSMTFLLLLYAKH 24 (381)
Q Consensus 4 II~Vl~iif~l~~llliyik~ 24 (381)
|+.-|++.+++++++++|++.
T Consensus 62 vLtgLaIamILfiifvlyvFn 82 (88)
T PHA03164 62 VLTGLAIAMILFIIFVLYVFN 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHhee
Confidence 334444444555555555544
No 216
>PHA02975 hypothetical protein; Provisional
Probab=22.42 E-value=94 Score=24.68 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 016846 8 LTTMFSMTFLLLLYAK 23 (381)
Q Consensus 8 l~iif~l~~llliyik 23 (381)
++.++++++++++|.|
T Consensus 51 i~~v~~~~~~~flYLK 66 (69)
T PHA02975 51 IIFITCIAVFTFLYLK 66 (69)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444555556655
No 217
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.38 E-value=31 Score=25.29 Aligned_cols=14 Identities=43% Similarity=0.971 Sum_probs=7.3
Q ss_pred CCCCccccccCCCc
Q 016846 115 STCPLCRYRVDPED 128 (381)
Q Consensus 115 ~tCPlCR~~v~~~~ 128 (381)
..||+|..++..+.
T Consensus 21 ~~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 21 GCCPLCGRPLDEEH 34 (54)
T ss_dssp EE-TTT--EE-HHH
T ss_pred CcCCCCCCCCCHHH
Confidence 38999999887543
No 218
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=22.31 E-value=36 Score=32.67 Aligned_cols=14 Identities=14% Similarity=0.515 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHHH
Q 016846 4 VVGVLTTMFSMTFL 17 (381)
Q Consensus 4 II~Vl~iif~l~~l 17 (381)
+++|+++||+.+++
T Consensus 47 ~~tVILVI~i~v~v 60 (221)
T PF08374_consen 47 IMTVILVIFIVVLV 60 (221)
T ss_pred hhhhHHHHHHHHHH
Confidence 44444444444333
No 219
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=21.75 E-value=74 Score=30.23 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCC
Q 016846 5 VGVLTTMFSMTFLLLLYAKHCKRGNS 30 (381)
Q Consensus 5 I~Vl~iif~l~~llliyik~c~rr~~ 30 (381)
|.|-++|+++++|..+.+|+|..+..
T Consensus 104 ITvSlImViaAliTtlvlK~C~~~s~ 129 (205)
T PF15298_consen 104 ITVSLIMVIAALITTLVLKNCCAQSQ 129 (205)
T ss_pred EeeehhHHHHHhhhhhhhhhhhhhhc
Confidence 33444444555555566666665443
No 220
>PHA02657 hypothetical protein; Provisional
Probab=21.72 E-value=91 Score=25.88 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 016846 14 MTFLLLLYAK 23 (381)
Q Consensus 14 l~~llliyik 23 (381)
++|+++++++
T Consensus 40 l~flLLYLvk 49 (95)
T PHA02657 40 LIYLLIYLVD 49 (95)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 221
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=21.64 E-value=47 Score=28.61 Aligned_cols=9 Identities=22% Similarity=0.929 Sum_probs=5.8
Q ss_pred ccccccccc
Q 016846 78 ECAVCLTRF 86 (381)
Q Consensus 78 ~C~ICle~~ 86 (381)
.||-|..+|
T Consensus 4 ~CP~C~sey 12 (109)
T TIGR00686 4 PCPKCNSEY 12 (109)
T ss_pred cCCcCCCcc
Confidence 477776665
No 222
>PHA02849 putative transmembrane protein; Provisional
Probab=20.90 E-value=90 Score=25.45 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 016846 6 GVLTTMFSMTFLLLLY 21 (381)
Q Consensus 6 ~Vl~iif~l~~llliy 21 (381)
.|+++++++++.+++|
T Consensus 21 ~v~v~vI~i~~flLly 36 (82)
T PHA02849 21 LVFVLVISFLAFMLLY 36 (82)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 223
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=20.70 E-value=3.1e+02 Score=22.73 Aligned_cols=19 Identities=0% Similarity=0.090 Sum_probs=12.3
Q ss_pred CCCCCHHHHhhCCceeecc
Q 016846 51 NSGIDRTVIESLPIFRFGA 69 (381)
Q Consensus 51 ~~gl~~~~i~~Lp~~~~~~ 69 (381)
...+..++++.|-.+....
T Consensus 49 ~D~lTpDQVrAlHRlvTsS 67 (92)
T PHA02681 49 EDKMTDDQVRAFHALVTSS 67 (92)
T ss_pred hccCCHHHHHHHHHHHhCC
Confidence 4457778888876655443
No 224
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=20.63 E-value=57 Score=35.58 Aligned_cols=35 Identities=23% Similarity=0.598 Sum_probs=24.0
Q ss_pred CCCcccccccccccCC-----------cceeecCCCCceeChhcHHHH
Q 016846 74 KDGLECAVCLTRFEPT-----------EVLRLLPKCKHAFHVECVDTW 110 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~-----------~~v~~lp~CgH~FH~~CI~~W 110 (381)
.....|+||.|.|+.- +.+. +. -|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~-le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVY-LE-FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceee-ec-cCceeeccccchH
Confidence 3445899999998542 2233 32 5889999998764
No 225
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=20.40 E-value=80 Score=28.66 Aligned_cols=7 Identities=43% Similarity=0.947 Sum_probs=2.8
Q ss_pred ehhhHHH
Q 016846 3 VVVGVLT 9 (381)
Q Consensus 3 iII~Vl~ 9 (381)
||++|++
T Consensus 84 vi~~Vi~ 90 (179)
T PF13908_consen 84 VICGVIA 90 (179)
T ss_pred hhhHHHH
Confidence 3443443
No 226
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.26 E-value=18 Score=35.26 Aligned_cols=48 Identities=25% Similarity=0.568 Sum_probs=35.2
Q ss_pred cccccccccccCCc--c-eeecCC-------CCceeChhcHHHHhcC-CCCCCcccccc
Q 016846 77 LECAVCLTRFEPTE--V-LRLLPK-------CKHAFHVECVDTWLDS-HSTCPLCRYRV 124 (381)
Q Consensus 77 ~~C~ICle~~~~~~--~-v~~lp~-------CgH~FH~~CI~~Wl~~-~~tCPlCR~~v 124 (381)
..|.||...|...+ . .+++.. |+|..|..|+..-+.+ ...||.|+...
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 46999999997432 2 223323 9999999999998765 45899998753
Done!