Query 016846
Match_columns 381
No_of_seqs 347 out of 2084
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 04:45:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 4.2E-16 1.4E-20 125.8 8.2 82 44-126 7-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 5.8E-16 2E-20 120.0 4.7 70 57-127 4-73 (75)
3 2ect_A Ring finger protein 126 99.5 4.6E-14 1.6E-18 109.7 6.1 56 73-129 12-67 (78)
4 1iym_A EL5; ring-H2 finger, ub 99.5 5.2E-14 1.8E-18 102.2 4.9 51 75-125 4-54 (55)
5 2ep4_A Ring finger protein 24; 99.4 1E-13 3.4E-18 106.7 5.3 53 73-126 12-64 (74)
6 2kiz_A E3 ubiquitin-protein li 99.4 1.3E-13 4.4E-18 104.7 4.7 53 73-126 11-63 (69)
7 2ecl_A Ring-box protein 2; RNF 99.4 1.7E-13 5.9E-18 108.4 3.2 53 75-127 14-77 (81)
8 3ng2_A RNF4, snurf, ring finge 99.4 2.1E-13 7.3E-18 103.6 3.3 57 74-131 8-68 (71)
9 2xeu_A Ring finger protein 4; 99.3 3.5E-13 1.2E-17 100.1 2.7 56 75-131 2-61 (64)
10 2ecm_A Ring finger and CHY zin 99.3 8.7E-13 3E-17 95.5 4.1 51 74-125 3-54 (55)
11 1v87_A Deltex protein 2; ring- 99.3 8.9E-13 3.1E-17 109.5 4.5 50 76-126 25-94 (114)
12 2ea6_A Ring finger protein 4; 99.3 7.8E-13 2.7E-17 99.6 3.3 53 73-126 12-68 (69)
13 2ecn_A Ring finger protein 141 99.3 1.6E-12 5.4E-17 98.9 3.6 51 73-128 12-62 (70)
14 2djb_A Polycomb group ring fin 99.3 3.4E-12 1.2E-16 98.0 5.2 56 72-130 11-66 (72)
15 3dpl_R Ring-box protein 1; ubi 99.2 3.2E-12 1.1E-16 106.7 3.9 50 75-125 36-100 (106)
16 2d8t_A Dactylidin, ring finger 99.2 2.3E-12 7.9E-17 98.7 2.6 52 73-128 12-63 (71)
17 1chc_A Equine herpes virus-1 r 99.2 5.8E-12 2E-16 95.1 4.7 48 75-125 4-51 (68)
18 2ct2_A Tripartite motif protei 99.2 7E-12 2.4E-16 98.8 5.1 56 73-129 12-71 (88)
19 2ysl_A Tripartite motif-contai 99.2 1.3E-11 4.6E-16 94.2 5.1 52 73-128 17-71 (73)
20 2ecy_A TNF receptor-associated 99.2 1.4E-11 4.9E-16 92.8 4.4 52 74-129 13-65 (66)
21 2yur_A Retinoblastoma-binding 99.2 1.9E-11 6.6E-16 94.5 5.1 53 73-128 12-66 (74)
22 2egp_A Tripartite motif-contai 99.2 1.3E-11 4.4E-16 95.6 3.3 54 73-130 9-69 (79)
23 2ecw_A Tripartite motif-contai 99.1 2.6E-11 9E-16 94.4 5.0 53 74-130 17-75 (85)
24 2csy_A Zinc finger protein 183 99.1 1.7E-11 5.8E-16 96.0 3.8 49 73-125 12-60 (81)
25 1t1h_A Gspef-atpub14, armadill 99.1 2.4E-11 8.2E-16 94.2 4.6 53 74-130 6-59 (78)
26 2d8s_A Cellular modulator of i 99.1 1.8E-11 6.3E-16 97.2 4.0 53 74-128 13-72 (80)
27 4ayc_A E3 ubiquitin-protein li 99.1 1.1E-11 3.8E-16 106.9 2.3 48 76-127 53-100 (138)
28 2ecv_A Tripartite motif-contai 99.1 3.4E-11 1.2E-15 93.8 4.8 53 74-130 17-75 (85)
29 4ap4_A E3 ubiquitin ligase RNF 99.1 2.4E-11 8.3E-16 102.0 4.2 56 75-131 6-65 (133)
30 4a0k_B E3 ubiquitin-protein li 99.1 6.3E-12 2.2E-16 106.9 0.5 52 75-127 47-113 (117)
31 3lrq_A E3 ubiquitin-protein li 99.1 1.4E-11 4.7E-16 100.9 2.0 54 75-131 21-75 (100)
32 1g25_A CDK-activating kinase a 99.1 4.1E-11 1.4E-15 90.0 4.2 55 76-131 3-60 (65)
33 2y43_A E3 ubiquitin-protein li 99.1 3.5E-11 1.2E-15 97.7 2.6 52 75-129 21-72 (99)
34 2ysj_A Tripartite motif-contai 99.1 1.2E-10 4.1E-15 86.8 5.1 44 73-120 17-63 (63)
35 4ap4_A E3 ubiquitin ligase RNF 99.1 6E-11 2.1E-15 99.6 3.3 58 74-132 70-131 (133)
36 3ztg_A E3 ubiquitin-protein li 99.0 1.5E-10 5E-15 92.5 5.0 50 73-125 10-61 (92)
37 2ckl_A Polycomb group ring fin 99.0 1.1E-10 3.8E-15 96.3 4.1 51 74-127 13-63 (108)
38 2ecj_A Tripartite motif-contai 99.0 1.8E-10 6.2E-15 83.9 4.0 43 74-120 13-58 (58)
39 3fl2_A E3 ubiquitin-protein li 99.0 1E-10 3.5E-15 98.8 3.0 48 75-126 51-99 (124)
40 1jm7_A BRCA1, breast cancer ty 99.0 2.4E-10 8.1E-15 94.1 4.1 51 76-130 21-74 (112)
41 3hct_A TNF receptor-associated 99.0 1.8E-10 6.3E-15 96.6 3.0 54 72-129 14-68 (118)
42 2ckl_B Ubiquitin ligase protei 99.0 1.5E-10 5E-15 102.4 2.5 50 75-127 53-103 (165)
43 2ct0_A Non-SMC element 1 homol 98.9 5.8E-10 2E-14 87.6 4.7 48 75-125 14-63 (74)
44 2kr4_A Ubiquitin conjugation f 98.9 4.2E-10 1.4E-14 89.8 3.9 54 74-131 12-65 (85)
45 2kre_A Ubiquitin conjugation f 98.9 5.8E-10 2E-14 91.9 4.6 55 74-132 27-81 (100)
46 3l11_A E3 ubiquitin-protein li 98.9 1.7E-10 5.9E-15 96.0 1.3 48 74-125 13-61 (115)
47 1wgm_A Ubiquitin conjugation f 98.9 8.7E-10 3E-14 90.5 4.8 55 74-132 20-75 (98)
48 1z6u_A NP95-like ring finger p 98.9 5.9E-10 2E-14 98.0 3.9 49 75-127 77-126 (150)
49 1rmd_A RAG1; V(D)J recombinati 98.9 4.7E-10 1.6E-14 93.5 2.0 50 76-129 23-73 (116)
50 1e4u_A Transcriptional repress 98.9 2.1E-09 7.1E-14 84.8 5.3 56 73-129 8-65 (78)
51 1jm7_B BARD1, BRCA1-associated 98.8 8.7E-10 3E-14 92.3 2.5 50 75-130 21-71 (117)
52 1bor_A Transcription factor PM 98.8 1.9E-09 6.5E-14 79.2 2.4 46 74-126 4-49 (56)
53 2vje_A E3 ubiquitin-protein li 98.8 2.5E-09 8.5E-14 80.9 2.7 48 75-125 7-56 (64)
54 3knv_A TNF receptor-associated 98.7 2.1E-09 7.2E-14 93.6 2.0 50 74-127 29-79 (141)
55 2y1n_A E3 ubiquitin-protein li 98.7 3.4E-09 1.2E-13 106.5 3.6 49 76-128 332-381 (389)
56 2c2l_A CHIP, carboxy terminus 98.7 3.8E-09 1.3E-13 99.0 3.6 54 74-131 206-260 (281)
57 2yu4_A E3 SUMO-protein ligase 98.7 3.4E-09 1.2E-13 85.9 2.5 55 74-131 5-68 (94)
58 2vje_B MDM4 protein; proto-onc 98.7 5.9E-09 2E-13 78.6 2.4 49 75-125 6-55 (63)
59 3hcs_A TNF receptor-associated 98.7 6.8E-09 2.3E-13 91.9 2.8 54 72-129 14-68 (170)
60 4ic3_A E3 ubiquitin-protein li 98.6 6.4E-09 2.2E-13 80.6 0.9 44 75-126 23-67 (74)
61 3k1l_B Fancl; UBC, ring, RWD, 98.6 1.4E-08 4.8E-13 100.5 2.4 52 74-125 306-372 (381)
62 1wim_A KIAA0161 protein; ring 98.6 9.9E-09 3.4E-13 82.6 1.1 55 74-129 3-69 (94)
63 2f42_A STIP1 homology and U-bo 98.6 1.7E-08 5.9E-13 91.6 2.7 55 73-131 103-158 (179)
64 2ecg_A Baculoviral IAP repeat- 98.4 4.1E-08 1.4E-12 76.0 1.3 43 76-126 25-68 (75)
65 3htk_C E3 SUMO-protein ligase 98.4 1.2E-07 4E-12 90.8 3.2 55 74-131 179-237 (267)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.4 1.5E-07 5.3E-12 70.6 3.2 48 74-125 4-58 (60)
67 2bay_A PRE-mRNA splicing facto 98.4 8.8E-08 3E-12 72.1 1.7 53 77-132 4-56 (61)
68 2ea5_A Cell growth regulator w 98.3 2.5E-07 8.6E-12 70.8 3.6 44 75-126 14-58 (68)
69 2yho_A E3 ubiquitin-protein li 98.3 1.1E-07 3.6E-12 74.9 0.7 43 76-126 18-61 (79)
70 3t6p_A Baculoviral IAP repeat- 98.2 3.5E-07 1.2E-11 90.6 2.5 43 75-125 294-337 (345)
71 3vk6_A E3 ubiquitin-protein li 97.8 1.1E-05 3.7E-10 66.5 3.6 46 78-126 3-49 (101)
72 3nw0_A Non-structural maintena 97.8 1.6E-05 5.3E-10 75.0 5.0 49 76-127 180-230 (238)
73 2ko5_A Ring finger protein Z; 95.0 0.024 8.1E-07 46.2 4.4 48 75-127 27-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 93.9 0.031 1.1E-06 44.6 2.9 35 75-110 2-36 (101)
75 2lri_C Autoimmune regulator; Z 91.9 0.16 5.6E-06 38.4 4.2 46 75-124 11-60 (66)
76 1we9_A PHD finger family prote 91.3 0.088 3E-06 39.0 2.0 49 74-122 4-57 (64)
77 3lqh_A Histone-lysine N-methyl 87.1 0.3 1E-05 44.1 2.7 49 77-125 3-65 (183)
78 2k16_A Transcription initiatio 86.1 0.3 1E-05 37.2 1.8 51 74-125 16-70 (75)
79 2l5u_A Chromodomain-helicase-D 85.5 0.58 2E-05 34.5 3.1 44 75-122 10-57 (61)
80 1mm2_A MI2-beta; PHD, zinc fin 84.6 0.52 1.8E-05 34.8 2.5 47 74-124 7-57 (61)
81 3u5n_A E3 ubiquitin-protein li 84.6 0.53 1.8E-05 42.6 3.1 47 74-124 5-55 (207)
82 3m62_A Ubiquitin conjugation f 84.5 0.5 1.7E-05 52.4 3.3 56 73-132 888-944 (968)
83 3o36_A Transcription intermedi 84.1 0.57 1.9E-05 41.6 3.0 45 76-124 4-52 (184)
84 1wil_A KIAA1045 protein; ring 83.5 0.94 3.2E-05 36.2 3.6 34 75-110 14-47 (89)
85 2yt5_A Metal-response element- 82.3 0.58 2E-05 34.6 1.9 51 74-124 4-62 (66)
86 2yql_A PHD finger protein 21A; 81.9 0.49 1.7E-05 34.2 1.3 46 73-122 6-55 (56)
87 1wep_A PHF8; structural genomi 81.7 1.4 4.6E-05 34.0 3.9 49 75-124 11-64 (79)
88 2lv9_A Histone-lysine N-methyl 79.7 1 3.5E-05 36.3 2.7 45 76-122 28-75 (98)
89 2xb1_A Pygopus homolog 2, B-ce 79.2 0.44 1.5E-05 39.0 0.4 48 77-124 4-62 (105)
90 2ysm_A Myeloid/lymphoid or mix 79.0 1.2 4.2E-05 36.2 3.0 46 75-121 6-55 (111)
91 1f62_A Transcription factor WS 79.0 1.2 4E-05 31.3 2.5 44 78-122 2-49 (51)
92 1xwh_A Autoimmune regulator; P 78.6 0.67 2.3E-05 34.6 1.2 44 75-122 7-54 (66)
93 3v43_A Histone acetyltransfera 77.0 1.2 4.2E-05 36.5 2.4 45 78-122 63-111 (112)
94 2ri7_A Nucleosome-remodeling f 76.5 0.66 2.3E-05 40.6 0.7 49 74-123 6-59 (174)
95 2kgg_A Histone demethylase jar 76.0 1.5 5.1E-05 31.1 2.4 44 78-121 4-52 (52)
96 1fp0_A KAP-1 corepressor; PHD 75.7 2.5 8.4E-05 33.8 3.8 46 74-123 23-72 (88)
97 2cs3_A Protein C14ORF4, MY039 75.2 3.6 0.00012 32.6 4.5 39 74-113 13-52 (93)
98 2puy_A PHD finger protein 21A; 75.2 0.95 3.3E-05 33.0 1.1 46 75-124 4-53 (60)
99 1wee_A PHD finger family prote 74.7 1.2 4E-05 33.7 1.6 50 74-124 14-67 (72)
100 2vpb_A Hpygo1, pygopus homolog 74.1 2.1 7.2E-05 32.0 2.9 47 75-121 7-64 (65)
101 2l43_A N-teminal domain from h 73.9 1.1 3.9E-05 35.4 1.4 53 75-127 24-79 (88)
102 1weo_A Cellulose synthase, cat 72.4 8.2 0.00028 31.0 6.0 51 76-126 16-70 (93)
103 2lbm_A Transcriptional regulat 72.1 3.5 0.00012 35.7 4.2 46 73-122 60-116 (142)
104 3i2d_A E3 SUMO-protein ligase 70.6 2.2 7.7E-05 42.4 2.9 51 77-131 250-305 (371)
105 1weu_A Inhibitor of growth fam 69.9 3.6 0.00012 33.0 3.5 46 74-124 34-86 (91)
106 1wem_A Death associated transc 69.9 2.1 7.2E-05 32.5 2.1 47 76-124 16-71 (76)
107 2ku3_A Bromodomain-containing 69.7 1.9 6.6E-05 32.8 1.8 49 74-122 14-65 (71)
108 4fo9_A E3 SUMO-protein ligase 69.1 2.4 8.3E-05 42.0 2.8 50 77-130 216-270 (360)
109 2e6r_A Jumonji/ARID domain-con 68.4 1.7 5.8E-05 34.7 1.3 48 75-123 15-66 (92)
110 1wev_A Riken cDNA 1110020M19; 68.4 1.7 5.8E-05 34.4 1.2 49 76-124 16-73 (88)
111 3o70_A PHD finger protein 13; 68.4 1.9 6.4E-05 32.5 1.4 47 74-122 17-66 (68)
112 1y02_A CARP2, FYVE-ring finger 67.0 1.1 3.8E-05 37.8 -0.1 46 77-122 20-65 (120)
113 2ro1_A Transcription intermedi 66.4 2 6.9E-05 38.5 1.5 43 77-123 3-49 (189)
114 1wfk_A Zinc finger, FYVE domai 66.3 5.2 0.00018 31.6 3.7 51 74-124 7-64 (88)
115 2yw8_A RUN and FYVE domain-con 65.5 5.3 0.00018 30.9 3.6 36 75-110 18-53 (82)
116 1wew_A DNA-binding family prot 65.0 2.5 8.6E-05 32.4 1.6 48 75-124 15-73 (78)
117 1z2q_A LM5-1; membrane protein 64.9 5.6 0.00019 30.9 3.6 36 75-110 20-55 (84)
118 1joc_A EEA1, early endosomal a 64.4 4.3 0.00015 34.1 3.1 35 76-110 69-103 (125)
119 3t7l_A Zinc finger FYVE domain 64.0 4.7 0.00016 31.8 3.1 49 76-124 20-74 (90)
120 2ct7_A Ring finger protein 31; 63.9 1.4 4.8E-05 34.4 -0.0 42 79-120 28-73 (86)
121 1dvp_A HRS, hepatocyte growth 63.3 4.1 0.00014 37.0 2.9 35 76-110 161-195 (220)
122 1vfy_A Phosphatidylinositol-3- 62.4 6.1 0.00021 29.8 3.3 34 77-110 12-45 (73)
123 3zyq_A Hepatocyte growth facto 61.8 4.6 0.00016 37.0 3.1 49 76-124 164-220 (226)
124 1wen_A Inhibitor of growth fam 61.2 8.1 0.00028 29.3 3.8 45 75-124 15-66 (71)
125 3ql9_A Transcriptional regulat 61.2 8.1 0.00028 32.9 4.2 46 73-122 54-110 (129)
126 3v43_A Histone acetyltransfera 60.4 9.5 0.00032 31.0 4.4 45 77-121 6-62 (112)
127 1z60_A TFIIH basal transcripti 60.1 2.9 9.9E-05 31.0 1.1 42 78-120 17-58 (59)
128 1x4u_A Zinc finger, FYVE domai 60.0 6.6 0.00023 30.4 3.2 34 76-109 14-47 (84)
129 3shb_A E3 ubiquitin-protein li 59.0 3 0.0001 32.3 1.0 44 78-122 28-76 (77)
130 1zbd_B Rabphilin-3A; G protein 56.5 7.1 0.00024 33.3 3.1 49 75-123 54-107 (134)
131 2kwj_A Zinc finger protein DPF 55.6 9.2 0.00032 31.3 3.6 33 78-110 3-41 (114)
132 2rsd_A E3 SUMO-protein ligase 55.0 2.8 9.5E-05 31.4 0.2 46 76-122 10-64 (68)
133 3mpx_A FYVE, rhogef and PH dom 54.9 2.6 8.7E-05 41.5 0.0 49 76-124 375-430 (434)
134 2jmo_A Parkin; IBR, E3 ligase, 54.5 2.1 7.3E-05 33.1 -0.5 20 97-118 55-74 (80)
135 3ask_A E3 ubiquitin-protein li 54.3 5.3 0.00018 37.1 2.0 44 78-122 176-224 (226)
136 3mjh_B Early endosome antigen 53.2 1.9 6.4E-05 28.6 -0.9 17 74-90 3-19 (34)
137 2e6s_A E3 ubiquitin-protein li 52.7 5.5 0.00019 30.7 1.6 44 78-122 28-76 (77)
138 4gne_A Histone-lysine N-methyl 51.9 14 0.00048 30.3 4.0 46 74-125 13-64 (107)
139 2jwa_A Receptor tyrosine-prote 50.2 13 0.00045 25.9 3.0 21 4-25 18-38 (44)
140 3asl_A E3 ubiquitin-protein li 49.9 6.1 0.00021 29.8 1.4 44 78-122 20-68 (70)
141 1x61_A Thyroid receptor intera 48.1 24 0.00083 25.4 4.5 42 76-127 5-46 (72)
142 2vnf_A ING 4, P29ING4, inhibit 46.6 8 0.00027 28.2 1.6 43 75-122 9-58 (60)
143 2ysm_A Myeloid/lymphoid or mix 46.3 5.1 0.00018 32.4 0.5 45 78-123 56-104 (111)
144 3c6w_A P28ING5, inhibitor of g 45.5 9 0.00031 27.9 1.7 43 75-122 8-57 (59)
145 3kqi_A GRC5, PHD finger protei 44.7 11 0.00037 28.5 2.1 47 77-124 11-62 (75)
146 2cu8_A Cysteine-rich protein 2 43.3 32 0.0011 25.2 4.6 42 76-128 9-50 (76)
147 2ks1_B Epidermal growth factor 43.3 22 0.00076 24.7 3.3 6 4-9 14-19 (44)
148 3kv5_D JMJC domain-containing 43.2 12 0.00043 38.2 3.0 50 75-125 36-90 (488)
149 1x4k_A Skeletal muscle LIM-pro 43.2 30 0.001 24.9 4.3 42 77-128 6-47 (72)
150 1wyh_A SLIM 2, skeletal muscle 41.5 28 0.00096 25.0 4.0 42 77-128 6-47 (72)
151 2kwj_A Zinc finger protein DPF 40.6 3.8 0.00013 33.6 -1.1 46 78-124 60-109 (114)
152 1g47_A Pinch protein; LIM doma 40.0 31 0.001 25.2 4.0 43 76-128 11-53 (77)
153 1x4l_A Skeletal muscle LIM-pro 39.5 43 0.0015 24.1 4.7 43 76-128 5-49 (72)
154 2zet_C Melanophilin; complex, 38.8 19 0.00064 31.3 3.0 48 75-123 67-117 (153)
155 2jmi_A Protein YNG1, ING1 homo 37.8 11 0.00039 29.9 1.3 46 74-122 24-75 (90)
156 2k9y_A Ephrin type-A receptor 37.3 22 0.00074 23.6 2.5 12 4-15 16-27 (41)
157 2klu_A T-cell surface glycopro 37.0 28 0.00095 26.5 3.2 8 98-105 59-66 (70)
158 2ks1_B Epidermal growth factor 36.9 41 0.0014 23.3 3.9 23 4-26 17-39 (44)
159 3f6q_B LIM and senescent cell 36.1 22 0.00076 25.3 2.6 42 76-127 11-52 (72)
160 3o7a_A PHD finger protein 13 v 35.7 10 0.00035 26.6 0.6 41 81-122 8-51 (52)
161 1zfo_A LAsp-1; LIM domain, zin 35.7 12 0.00042 23.6 1.0 27 78-107 5-31 (31)
162 2g6q_A Inhibitor of growth pro 35.5 15 0.00053 26.9 1.6 45 75-122 10-59 (62)
163 2pv0_B DNA (cytosine-5)-methyl 35.4 33 0.0011 34.2 4.5 46 73-122 90-147 (386)
164 1x63_A Skeletal muscle LIM-pro 35.2 42 0.0014 24.8 4.1 42 77-128 16-57 (82)
165 2l2t_A Receptor tyrosine-prote 35.0 43 0.0015 23.3 3.7 9 16-24 28-36 (44)
166 2knc_B Integrin beta-3; transm 35.0 23 0.00079 27.5 2.6 21 3-23 13-33 (79)
167 2a20_A Regulating synaptic mem 34.0 9.8 0.00034 28.3 0.3 49 73-122 6-59 (62)
168 1iml_A CRIP, cysteine rich int 33.2 28 0.00097 25.5 2.8 39 78-127 2-40 (76)
169 2co8_A NEDD9 interacting prote 32.6 40 0.0014 25.2 3.7 43 76-129 15-57 (82)
170 2jne_A Hypothetical protein YF 32.5 15 0.00052 29.9 1.2 39 77-124 33-71 (101)
171 2l2t_A Receptor tyrosine-prote 32.1 35 0.0012 23.7 2.9 28 3-30 12-39 (44)
172 2dj7_A Actin-binding LIM prote 31.6 49 0.0017 24.7 4.0 39 76-125 15-53 (80)
173 2d8x_A Protein pinch; LIM doma 31.4 63 0.0021 23.0 4.5 41 76-128 5-45 (70)
174 1x68_A FHL5 protein; four-and- 30.7 59 0.002 23.7 4.3 42 77-128 6-49 (76)
175 1pi7_A VPU protein, U ORF prot 30.6 31 0.0011 23.0 2.3 19 6-24 14-32 (36)
176 2k1k_A Ephrin type-A receptor 30.2 29 0.001 23.2 2.2 16 4-19 17-32 (38)
177 2gmg_A Hypothetical protein PF 29.9 14 0.0005 30.3 0.7 25 97-126 72-96 (105)
178 3a1b_A DNA (cytosine-5)-methyl 28.7 34 0.0011 30.1 2.9 45 73-121 76-132 (159)
179 1a7i_A QCRP2 (LIM1); LIM domai 27.9 31 0.0011 25.6 2.3 41 77-128 8-48 (81)
180 2o35_A Hypothetical protein DU 27.4 18 0.00061 29.6 0.8 12 102-113 43-54 (105)
181 2cup_A Skeletal muscle LIM-pro 27.3 74 0.0025 24.3 4.5 27 78-106 7-33 (101)
182 3fyb_A Protein of unknown func 27.2 18 0.00062 29.5 0.8 11 102-112 42-52 (104)
183 2d8v_A Zinc finger FYVE domain 26.5 50 0.0017 25.0 3.1 32 74-110 6-38 (67)
184 2d8y_A Eplin protein; LIM doma 26.1 64 0.0022 24.4 3.8 41 77-128 16-56 (91)
185 1wd2_A Ariadne-1 protein homol 25.5 13 0.00045 27.2 -0.2 36 78-113 8-47 (60)
186 2fiy_A Protein FDHE homolog; F 25.0 11 0.00037 36.4 -1.0 47 76-123 182-231 (309)
187 2dar_A PDZ and LIM domain prot 24.3 80 0.0027 23.8 4.1 41 76-128 25-65 (90)
188 3arc_M Photosystem II reaction 23.9 57 0.0019 21.8 2.6 22 3-24 8-29 (36)
189 1rut_X Flinc4, fusion protein 23.9 43 0.0015 29.1 2.8 50 76-127 32-82 (188)
190 2jrp_A Putative cytoplasmic pr 23.9 33 0.0011 26.9 1.7 14 78-91 4-17 (81)
191 2d8z_A Four and A half LIM dom 23.8 95 0.0032 22.0 4.2 39 77-127 6-44 (70)
192 2kpi_A Uncharacterized protein 23.7 45 0.0015 24.1 2.3 15 74-88 8-22 (56)
193 1nyp_A Pinch protein; LIM doma 23.5 63 0.0021 22.7 3.2 40 77-128 6-45 (66)
194 2cur_A Skeletal muscle LIM-pro 23.5 1E+02 0.0035 21.7 4.4 39 77-127 6-44 (69)
195 2egq_A FHL1 protein; LIM domai 23.2 70 0.0024 23.2 3.5 41 77-127 16-59 (77)
196 2l4z_A DNA endonuclease RBBP8, 22.6 50 0.0017 27.0 2.7 38 77-125 62-99 (123)
197 1v6g_A Actin binding LIM prote 22.0 90 0.0031 22.9 3.9 40 77-128 16-55 (81)
198 3kv4_A PHD finger protein 8; e 22.0 22 0.00075 36.1 0.5 50 79-128 7-61 (447)
199 4bbq_A Lysine-specific demethy 21.9 14 0.00049 29.8 -0.8 45 78-122 61-113 (117)
200 2l3k_A Rhombotin-2, linker, LI 21.6 52 0.0018 26.6 2.7 38 78-125 10-47 (123)
201 1m3v_A FLIN4, fusion of the LI 21.5 52 0.0018 26.5 2.6 50 77-128 33-83 (122)
202 2xjy_A Rhombotin-2; oncoprotei 21.4 66 0.0023 25.8 3.3 51 75-127 28-79 (131)
203 1x64_A Alpha-actinin-2 associa 21.4 1E+02 0.0035 23.2 4.2 41 76-128 25-65 (89)
204 1afo_A Glycophorin A; integral 21.1 62 0.0021 22.0 2.4 22 3-24 15-36 (40)
205 2l8s_A Integrin alpha-1; trans 20.4 66 0.0023 23.3 2.6 18 4-21 13-30 (54)
206 2rgt_A Fusion of LIM/homeobox 20.2 68 0.0023 27.3 3.2 38 78-125 67-104 (169)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.64 E-value=4.2e-16 Score=125.81 Aligned_cols=82 Identities=30% Similarity=0.657 Sum_probs=70.2
Q ss_pred CCCccccCCCCCHHHHhhCCceeecccCC-CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccc
Q 016846 44 PSSTNRKNSGIDRTVIESLPIFRFGALRG-HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRY 122 (381)
Q Consensus 44 ~~~~~~~~~gl~~~~i~~Lp~~~~~~~~~-~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~ 122 (381)
.........+++++.|+.||.+.+..... ..++..|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||.
T Consensus 7 ~~~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 85 (91)
T 2l0b_A 7 HHSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRC 85 (91)
T ss_dssp CSCCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCC
T ss_pred cCCCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCc
Confidence 33455667899999999999999876443 445678999999999988888999 9999999999999999999999999
Q ss_pred ccCC
Q 016846 123 RVDP 126 (381)
Q Consensus 123 ~v~~ 126 (381)
.+.+
T Consensus 86 ~~~~ 89 (91)
T 2l0b_A 86 MFPP 89 (91)
T ss_dssp BSSC
T ss_pred cCCC
Confidence 8854
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.8e-16 Score=120.00 Aligned_cols=70 Identities=40% Similarity=0.954 Sum_probs=61.5
Q ss_pred HHHhhCCceeecccCCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 57 TVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 57 ~~i~~Lp~~~~~~~~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
..++.||..++.......++..|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+.+.+.
T Consensus 4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3456789999887776777789999999999998888998 999999999999999999999999988653
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=4.6e-14 Score=109.73 Aligned_cols=56 Identities=39% Similarity=0.971 Sum_probs=49.5
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI 129 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 129 (381)
..+..+|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+...++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 345668999999999888888898 99999999999999999999999999876554
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.45 E-value=5.2e-14 Score=102.21 Aligned_cols=51 Identities=65% Similarity=1.300 Sum_probs=45.8
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
++.+|+||++.|..++.+..++.|+|.||..||.+|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456899999999988888888779999999999999999999999998763
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=106.74 Aligned_cols=53 Identities=43% Similarity=0.925 Sum_probs=47.4
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
..++..|+||++.|..+..+..++ |+|.||..||.+|+..+.+||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 344568999999999998888888 99999999999999999999999998854
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=104.74 Aligned_cols=53 Identities=40% Similarity=0.962 Sum_probs=47.2
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
..+...|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 345568999999998888888898 99999999999999999999999998854
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.7e-13 Score=108.35 Aligned_cols=53 Identities=25% Similarity=0.701 Sum_probs=42.8
Q ss_pred CCcccccccccccC-----------CcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 75 DGLECAVCLTRFEP-----------TEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 75 ~~~~C~ICle~~~~-----------~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
++..|+||++.|.. .+.++.++.|+|.||..||.+||..+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 34578888888854 344556656999999999999999999999999988644
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.36 E-value=2.1e-13 Score=103.62 Aligned_cols=57 Identities=21% Similarity=0.632 Sum_probs=47.9
Q ss_pred CCCcccccccccccCC----cceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846 74 KDGLECAVCLTRFEPT----EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL 131 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~----~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~ 131 (381)
.++..|+||++.|..+ ..+..++ |||.||..||.+|+..+.+||+||..+...++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 68 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhheee
Confidence 4556899999998764 4456777 9999999999999999999999999998776543
No 9
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.33 E-value=3.5e-13 Score=100.08 Aligned_cols=56 Identities=21% Similarity=0.626 Sum_probs=47.1
Q ss_pred CCcccccccccccCC----cceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846 75 DGLECAVCLTRFEPT----EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL 131 (381)
Q Consensus 75 ~~~~C~ICle~~~~~----~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~ 131 (381)
++.+|+||++.+..+ +.+..++ |||.||..|+.+|+..+.+||+||.++...++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccceee
Confidence 356899999999764 3456777 9999999999999999999999999998776544
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.32 E-value=8.7e-13 Score=95.55 Aligned_cols=51 Identities=29% Similarity=0.723 Sum_probs=43.0
Q ss_pred CCCcccccccccccCCc-ceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846 74 KDGLECAVCLTRFEPTE-VLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~-~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
.++..|+||++.|...+ .+..++ |+|.||..||.+|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34568999999996543 466777 9999999999999999999999998763
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.31 E-value=8.9e-13 Score=109.50 Aligned_cols=50 Identities=30% Similarity=0.705 Sum_probs=40.9
Q ss_pred CcccccccccccCCc---------------ceeecCCCCceeChhcHHHHh-----cCCCCCCccccccCC
Q 016846 76 GLECAVCLTRFEPTE---------------VLRLLPKCKHAFHVECVDTWL-----DSHSTCPLCRYRVDP 126 (381)
Q Consensus 76 ~~~C~ICle~~~~~~---------------~v~~lp~CgH~FH~~CI~~Wl-----~~~~tCPlCR~~v~~ 126 (381)
+..|+||++.|..+. .++.++ |+|.||..||..|+ ..+.+||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999999997653 334666 99999999999999 457799999998753
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=7.8e-13 Score=99.63 Aligned_cols=53 Identities=23% Similarity=0.698 Sum_probs=44.2
Q ss_pred CCCCcccccccccccCC----cceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846 73 HKDGLECAVCLTRFEPT----EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~----~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
..+...|+||++.|..+ ..+..++ |||.||..||..|+..+.+||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34566899999999764 3346677 99999999999999999999999998753
No 13
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.6e-12 Score=98.93 Aligned_cols=51 Identities=35% Similarity=0.962 Sum_probs=43.9
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
..+...|+||++.+.. ..++ |+|.||..||..|+..+..||+||..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 3456689999999876 5677 9999999999999999999999999986544
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.4e-12 Score=98.00 Aligned_cols=56 Identities=20% Similarity=0.443 Sum_probs=45.7
Q ss_pred CCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccc
Q 016846 72 GHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 72 ~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~ 130 (381)
...+...|+||++.+.++ +.+++ |||.||..||..|+..+..||+||..+...++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred hcCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 344567899999999765 33346 999999999999999889999999999766543
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.24 E-value=3.2e-12 Score=106.74 Aligned_cols=50 Identities=28% Similarity=0.636 Sum_probs=42.6
Q ss_pred CCcccccccccccCCc---------------ceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846 75 DGLECAVCLTRFEPTE---------------VLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~---------------~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
++..|+||++.|..+. .++.++ |+|.||..||..||..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4568999999998652 255676 9999999999999999999999999874
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.3e-12 Score=98.69 Aligned_cols=52 Identities=33% Similarity=0.546 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
..+...|+||++.+.++ +.++ |||.||..||..|+..+..||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 34556899999998665 4667 9999999999999999999999999886443
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.23 E-value=5.8e-12 Score=95.14 Aligned_cols=48 Identities=35% Similarity=0.852 Sum_probs=41.7
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
.+..|+||++.+.++ +..++ |||.||..|+..|+..+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 345899999998653 46777 9999999999999999999999999885
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=7e-12 Score=98.84 Aligned_cols=56 Identities=27% Similarity=0.704 Sum_probs=46.2
Q ss_pred CCCCcccccccccccCCcc-eeecCCCCceeChhcHHHHhcCC---CCCCccccccCCCcc
Q 016846 73 HKDGLECAVCLTRFEPTEV-LRLLPKCKHAFHVECVDTWLDSH---STCPLCRYRVDPEDI 129 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~-v~~lp~CgH~FH~~CI~~Wl~~~---~tCPlCR~~v~~~~~ 129 (381)
..+..+|+||++.|...+. .+.++ |||.||..||..|+..+ ..||+||..+...++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 3456789999999987654 56777 99999999999999875 789999999876543
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=94.22 Aligned_cols=52 Identities=23% Similarity=0.657 Sum_probs=42.6
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhc---CCCCCCccccccCCCc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD---SHSTCPLCRYRVDPED 128 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~---~~~tCPlCR~~v~~~~ 128 (381)
..+...|+||++.|.++ +.++ |||.||..||..|+. ....||+||..+..++
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34567899999998754 4567 999999999999997 4568999999987654
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.4e-11 Score=92.80 Aligned_cols=52 Identities=21% Similarity=0.547 Sum_probs=43.0
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhc-CCCCCCccccccCCCcc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-SHSTCPLCRYRVDPEDI 129 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-~~~tCPlCR~~v~~~~~ 129 (381)
.+...|+||++.+.++. .++ |||.||..||..|+. ....||+||..+..+++
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 45678999999998763 356 999999999999995 56789999999876543
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.17 E-value=1.9e-11 Score=94.48 Aligned_cols=53 Identities=28% Similarity=0.576 Sum_probs=42.6
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC--CCCCccccccCCCc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH--STCPLCRYRVDPED 128 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPlCR~~v~~~~ 128 (381)
..+...|+||++.|.++ +.++.|||.||..||..|+..+ ..||+||+++...+
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34567899999999876 3455599999999999999865 68999999765433
No 22
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.15 E-value=1.3e-11 Score=95.57 Aligned_cols=54 Identities=22% Similarity=0.571 Sum_probs=44.5
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-------CCCCCccccccCCCccc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-------HSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-------~~tCPlCR~~v~~~~~~ 130 (381)
..+...|+||++.|.++ +.++ |||.||..||..|+.. ...||+||..+...++.
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred cccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC
Confidence 34567899999999776 3467 9999999999999986 56899999999765543
No 23
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.15 E-value=2.6e-11 Score=94.45 Aligned_cols=53 Identities=25% Similarity=0.645 Sum_probs=44.4
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC------CCCCCccccccCCCccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS------HSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~------~~tCPlCR~~v~~~~~~ 130 (381)
.+...|+||++.|..+ ..++ |||.||..||..|+.. ...||+||..+...++.
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 4556899999999776 3677 9999999999999987 67899999998766544
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.7e-11 Score=96.00 Aligned_cols=49 Identities=18% Similarity=0.522 Sum_probs=42.3
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
..+...|+||++.|..+ ++++ |||.||..||..|+.....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34456899999999664 3577 9999999999999998899999999985
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.15 E-value=2.4e-11 Score=94.23 Aligned_cols=53 Identities=17% Similarity=0.486 Sum_probs=44.6
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~ 130 (381)
.+.+.|+||++.|.++ +.++ |||.||..||..|+.. +.+||+||.++...++.
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~ 59 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT 59 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE
T ss_pred cccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc
Confidence 4567899999999776 4567 9999999999999987 78899999998766543
No 26
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.8e-11 Score=97.22 Aligned_cols=53 Identities=28% Similarity=0.710 Sum_probs=44.0
Q ss_pred CCCcccccccccccCCcceeecCCCC-----ceeChhcHHHHhcCC--CCCCccccccCCCc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCK-----HAFHVECVDTWLDSH--STCPLCRYRVDPED 128 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~Cg-----H~FH~~CI~~Wl~~~--~tCPlCR~~v~~~~ 128 (381)
.++..|.||+++|..++.+ ++| |+ |.||..||++||..+ .+||+||..+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4456899999999877766 588 96 999999999999875 58999999986543
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.13 E-value=1.1e-11 Score=106.92 Aligned_cols=48 Identities=29% Similarity=0.862 Sum_probs=42.0
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
+..|+||++.|.++ +.+| |||.||..||..|+..+.+||+||.++...
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 45799999999765 4677 999999999999999999999999998643
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.4e-11 Score=93.79 Aligned_cols=53 Identities=32% Similarity=0.765 Sum_probs=44.0
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC------CCCCCccccccCCCccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS------HSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~------~~tCPlCR~~v~~~~~~ 130 (381)
.+...|+||++.+..+ ..++ |||.||..|+..|+.. ...||+||..+...++.
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 4556899999999775 3467 9999999999999976 77899999998765543
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.13 E-value=2.4e-11 Score=101.98 Aligned_cols=56 Identities=21% Similarity=0.643 Sum_probs=47.6
Q ss_pred CCcccccccccccCC----cceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846 75 DGLECAVCLTRFEPT----EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL 131 (381)
Q Consensus 75 ~~~~C~ICle~~~~~----~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~ 131 (381)
+...|+||++.|.++ ..++.++ |||.||..||.+|+..+.+||+||+.+....+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence 456899999999765 4456777 9999999999999999999999999998766544
No 30
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.13 E-value=6.3e-12 Score=106.92 Aligned_cols=52 Identities=27% Similarity=0.599 Sum_probs=0.9
Q ss_pred CCcccccccccccCCc---------------ceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 75 DGLECAVCLTRFEPTE---------------VLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~---------------~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
+++.|+||++.|..+. .+..++ |+|.||..||.+||..+.+||+||+++...
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CC------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 4458999999997632 222345 999999999999999999999999987543
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.11 E-value=1.4e-11 Score=100.87 Aligned_cols=54 Identities=19% Similarity=0.639 Sum_probs=44.3
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC-CCCCccccccCCCcccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH-STCPLCRYRVDPEDILL 131 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~~~~ 131 (381)
+...|+||++.|..+ +..++ |||.||..||..|+... ..||+||.++...++..
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVN 75 (100)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHh
Confidence 456899999999754 33366 99999999999999887 69999999997666543
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=4.1e-11 Score=90.04 Aligned_cols=55 Identities=20% Similarity=0.501 Sum_probs=44.2
Q ss_pred Ccccccccc-cccCCcce-eecCCCCceeChhcHHHHhcC-CCCCCccccccCCCcccc
Q 016846 76 GLECAVCLT-RFEPTEVL-RLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDILL 131 (381)
Q Consensus 76 ~~~C~ICle-~~~~~~~v-~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~~ 131 (381)
+..|+||++ .+..+... ..++ |||.||..||.+|+.. ...||+||..+...++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence 458999999 78777543 3466 9999999999999765 467999999998776544
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.07 E-value=3.5e-11 Score=97.70 Aligned_cols=52 Identities=27% Similarity=0.729 Sum_probs=43.1
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI 129 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 129 (381)
+...|+||++.|.++ +..++ |||.||..||..|+..+..||+||..+...++
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l 72 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDL 72 (99)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred CCCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChhhC
Confidence 346899999999764 32336 99999999999999999999999999876544
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=86.80 Aligned_cols=44 Identities=25% Similarity=0.748 Sum_probs=37.0
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhc---CCCCCCcc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD---SHSTCPLC 120 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~---~~~tCPlC 120 (381)
..++..|+||++.|.++ +.++ |||.||..||..|+. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567899999999865 4567 999999999999998 46689998
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=6e-11 Score=99.55 Aligned_cols=58 Identities=21% Similarity=0.611 Sum_probs=47.8
Q ss_pred CCCcccccccccccCC----cceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846 74 KDGLECAVCLTRFEPT----EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS 132 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~----~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~ 132 (381)
.+...|+||++.|..+ ...+.++ |||.||..||..|+..+.+||+||..+..+++.+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence 4556899999998764 2345666 99999999999999999999999999987766543
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.04 E-value=1.5e-10 Score=92.50 Aligned_cols=50 Identities=28% Similarity=0.584 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC--CCCCCccccccC
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVD 125 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPlCR~~v~ 125 (381)
..+.+.|+||++.|.++ +.++.|||.||..||..|+.. ...||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34567899999999876 345559999999999999964 368999999873
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.03 E-value=1.1e-10 Score=96.27 Aligned_cols=51 Identities=25% Similarity=0.686 Sum_probs=43.1
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
.+...|+||++.|.++ +..++ |||.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3456899999999764 33347 999999999999999999999999998764
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.8e-10 Score=83.93 Aligned_cols=43 Identities=28% Similarity=0.875 Sum_probs=36.0
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhc---CCCCCCcc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD---SHSTCPLC 120 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~---~~~tCPlC 120 (381)
.+...|+||++.+.++ +.++ |||.||..||..|+. .+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4556899999999876 3467 999999999999954 56789998
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.01 E-value=1e-10 Score=98.77 Aligned_cols=48 Identities=23% Similarity=0.641 Sum_probs=40.8
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCC-CCCccccccCC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDP 126 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~-tCPlCR~~v~~ 126 (381)
+...|+||++.|.++ +.++ |||.||..||..|+..+. .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 446899999999865 4567 999999999999998644 89999999865
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=2.4e-10 Score=94.05 Aligned_cols=51 Identities=29% Similarity=0.668 Sum_probs=42.3
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCC---CCCCccccccCCCccc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH---STCPLCRYRVDPEDIL 130 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~---~tCPlCR~~v~~~~~~ 130 (381)
...|+||++.+..+ ..++ |||.||..||..|+..+ ..||+||..+...++.
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 45899999999766 3467 99999999999999875 4899999998766543
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.97 E-value=1.8e-10 Score=96.62 Aligned_cols=54 Identities=20% Similarity=0.495 Sum_probs=44.6
Q ss_pred CCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCC-CCCccccccCCCcc
Q 016846 72 GHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDPEDI 129 (381)
Q Consensus 72 ~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~-tCPlCR~~v~~~~~ 129 (381)
...+...|+||++.+..+ +.++ |||.||..||..|+.... .||+||.++...++
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhc
Confidence 345567999999999766 4567 999999999999998755 99999999876544
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.97 E-value=1.5e-10 Score=102.39 Aligned_cols=50 Identities=32% Similarity=0.727 Sum_probs=41.8
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPE 127 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~ 127 (381)
+...|+||++.|.++ +..++ |||.||..||..|+.. +..||+||..+...
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 456899999999764 44446 9999999999999987 77899999998543
No 43
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=5.8e-10 Score=87.56 Aligned_cols=48 Identities=21% Similarity=0.518 Sum_probs=40.3
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC--CCCCccccccC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH--STCPLCRYRVD 125 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPlCR~~v~ 125 (381)
...+|+||++.+..++.. +.|+|.||..||.+||+.+ .+||+||.++.
T Consensus 14 ~i~~C~IC~~~i~~g~~C---~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC---SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCcc---CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 446899999999866433 2599999999999999887 89999998874
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.94 E-value=4.2e-10 Score=89.80 Aligned_cols=54 Identities=15% Similarity=0.064 Sum_probs=46.2
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL 131 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~ 131 (381)
.+.+.|+||++.|.++ ++++ |||.|+..||..|+..+.+||+|+.++...++.+
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred chheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhcch
Confidence 4567999999999887 4677 9999999999999998899999999987665443
No 45
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.93 E-value=5.8e-10 Score=91.89 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=47.2
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS 132 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~ 132 (381)
.+.+.|+||++.|.++ ++++ |||.||..||..||..+.+||+|+.++...++.+.
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEEC
T ss_pred cHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhceEC
Confidence 4567899999999887 4677 99999999999999988999999999987665443
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.93 E-value=1.7e-10 Score=95.99 Aligned_cols=48 Identities=27% Similarity=0.740 Sum_probs=41.0
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVD 125 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~ 125 (381)
.+++.|+||++.|..+ +.++ |||.||..||..|+.. +..||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3457899999999765 4567 9999999999999977 678999999875
No 47
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.91 E-value=8.7e-10 Score=90.49 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=47.0
Q ss_pred CCCcccccccccccCCcceeecCCCC-ceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCK-HAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS 132 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~Cg-H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~ 132 (381)
.+.+.|+||++.|.++ ++++ || |.||..||..||..+.+||+|+.++...++.+.
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEc
Confidence 3567899999999887 4567 99 999999999999988899999999987665543
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.90 E-value=5.9e-10 Score=97.98 Aligned_cols=49 Identities=18% Similarity=0.522 Sum_probs=41.8
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCC-CCCccccccCCC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDPE 127 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~-tCPlCR~~v~~~ 127 (381)
+...|+||++.|.++ +.++ |||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 346899999999765 3477 999999999999998754 899999999765
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.87 E-value=4.7e-10 Score=93.46 Aligned_cols=50 Identities=32% Similarity=0.683 Sum_probs=42.2
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCcc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDI 129 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~ 129 (381)
...|+||++.+.++ +.++ |||.||..||..|+.. +..||+||.++...++
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 45899999999765 3467 9999999999999987 7789999999876553
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.86 E-value=2.1e-09 Score=84.84 Aligned_cols=56 Identities=20% Similarity=0.440 Sum_probs=42.9
Q ss_pred CCCCcccccccccccCCcce-eecCCCCceeChhcHHHHhcC-CCCCCccccccCCCcc
Q 016846 73 HKDGLECAVCLTRFEPTEVL-RLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDI 129 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v-~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~ 129 (381)
..++..|+||++.+...+.. .-++ |||.||..|+..++.. ...||+||+++....+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 34567899999998654332 2244 9999999999998754 6789999999976654
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=8.7e-10 Score=92.33 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=41.3
Q ss_pred CCcccccccccccCCcceeec-CCCCceeChhcHHHHhcCCCCCCccccccCCCccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLL-PKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~l-p~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~ 130 (381)
+...|+||++.|..+ +.+ + |||.||..||..|+. ..||+||..+...++.
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCC
T ss_pred hCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcccccc
Confidence 356899999999776 345 6 999999999999998 7899999998655443
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=1.9e-09 Score=79.20 Aligned_cols=46 Identities=26% Similarity=0.604 Sum_probs=38.6
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
.+...|+||++.|..+ +.++ |||.||..|+..| ...||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeec
Confidence 4567899999999876 5677 9999999999884 5689999998854
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.76 E-value=2.5e-09 Score=80.90 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=39.4
Q ss_pred CCcccccccccccCCccee-ecCCCCce-eChhcHHHHhcCCCCCCccccccC
Q 016846 75 DGLECAVCLTRFEPTEVLR-LLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~-~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
++.+|+||++.+.+. +. .+| |||. ||..|+..|+..+..||+||.++.
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 445899999986543 22 238 9999 899999999998899999999884
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.74 E-value=2.1e-09 Score=93.58 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=41.8
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCC-CCCccccccCCC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDPE 127 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~-tCPlCR~~v~~~ 127 (381)
.+.+.|+||++.|.++ +.++ |||.||..||..|+.... .||+||.++..+
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 4567899999999877 3466 999999999999998654 899999987543
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.74 E-value=3.4e-09 Score=106.50 Aligned_cols=49 Identities=22% Similarity=0.727 Sum_probs=41.7
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhc-CCCCCCccccccCCCc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-SHSTCPLCRYRVDPED 128 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-~~~tCPlCR~~v~~~~ 128 (381)
...|+||++.+..+ +.+| |||.||..|+..|+. ....||+||.++....
T Consensus 332 ~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 35899999998553 5677 999999999999998 6889999999986544
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=3.8e-09 Score=98.95 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=44.7
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCcccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDILL 131 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~~ 131 (381)
.+.+.|+||++.|.+| +++| |||.||..||..|+.. +.+||+|+.++...++.+
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred CcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence 4567899999999877 4677 9999999999999986 445999999997665543
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=3.4e-09 Score=85.87 Aligned_cols=55 Identities=16% Similarity=0.500 Sum_probs=43.1
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC------CCCCc--cccc-cCCCcccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH------STCPL--CRYR-VDPEDILL 131 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~------~tCPl--CR~~-v~~~~~~~ 131 (381)
.+.+.|+||++.|.++ +.++.|||.||..||..||..+ .+||+ |+.. +...++.+
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 4567899999999876 3453499999999999999753 48999 9877 65555543
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.68 E-value=5.9e-09 Score=78.55 Aligned_cols=49 Identities=16% Similarity=0.379 Sum_probs=39.4
Q ss_pred CCcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
....|+||++...+.. +..+| |||. ||..|+..|...+..||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3458999999865431 22348 9998 999999999988889999999884
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.66 E-value=6.8e-09 Score=91.94 Aligned_cols=54 Identities=20% Similarity=0.491 Sum_probs=44.5
Q ss_pred CCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC-CCCCccccccCCCcc
Q 016846 72 GHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH-STCPLCRYRVDPEDI 129 (381)
Q Consensus 72 ~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~~ 129 (381)
...+.+.|+||++.|.++ +.++ |||.||..||..|+... ..||+||..+...++
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhhh
Confidence 345667999999999876 4567 99999999999999764 489999999876543
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.61 E-value=6.4e-09 Score=80.56 Aligned_cols=44 Identities=23% Similarity=0.645 Sum_probs=36.8
Q ss_pred CCcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccCC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
++..|+||++.+.++ ..+| |||. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 345899999987553 5678 9999 999999998 789999998853
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.58 E-value=1.4e-08 Score=100.48 Aligned_cols=52 Identities=23% Similarity=0.656 Sum_probs=39.6
Q ss_pred CCCcccccccccccCCc----ceeecCCCCceeChhcHHHHhcCC-----------CCCCccccccC
Q 016846 74 KDGLECAVCLTRFEPTE----VLRLLPKCKHAFHVECVDTWLDSH-----------STCPLCRYRVD 125 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~----~v~~lp~CgH~FH~~CI~~Wl~~~-----------~tCPlCR~~v~ 125 (381)
....+|+||++.+.+.. .+...++|+|.||..||.+||+.. ..||.||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45568999999987622 222233699999999999999752 46999999884
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=9.9e-09 Score=82.65 Aligned_cols=55 Identities=18% Similarity=0.602 Sum_probs=43.8
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC--------CCCCCc--cccc--cCCCcc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--------HSTCPL--CRYR--VDPEDI 129 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--------~~tCPl--CR~~--v~~~~~ 129 (381)
.+..+|+||++.+..++.+...+ |||.||..|+..++.. ...||. |+.. +.+..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 34568999999998877766667 9999999999999863 236999 9998 655444
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.57 E-value=1.7e-08 Score=91.61 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=45.3
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC-CCCCccccccCCCcccc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH-STCPLCRYRVDPEDILL 131 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~~~~ 131 (381)
..+.+.||||++.|.+| +++| |||.||..||..|+..+ .+||+|+.++...++.+
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred CcHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc
Confidence 45678999999999876 4567 99999999999999763 47999999987665544
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=4.1e-08 Score=76.00 Aligned_cols=43 Identities=23% Similarity=0.644 Sum_probs=35.3
Q ss_pred CcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccCC
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
...|+||++.+.++ ..+| |||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 45799999997654 4677 9999 99999965 3689999998864
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.2e-07 Score=90.81 Aligned_cols=55 Identities=25% Similarity=0.538 Sum_probs=44.1
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC--CCCCc--cccccCCCcccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH--STCPL--CRYRVDPEDILL 131 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPl--CR~~v~~~~~~~ 131 (381)
...+.||||++.|.+| |+.+. |||.||..||..|+..+ ..||+ |++.+...++.+
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred ceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence 3456899999999777 33345 99999999999999864 47999 999887766544
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.38 E-value=1.5e-07 Score=70.58 Aligned_cols=48 Identities=23% Similarity=0.611 Sum_probs=37.0
Q ss_pred CCCcccccccccccCCcceeecCCCC--c---eeChhcHHHHhcC--CCCCCccccccC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCK--H---AFHVECVDTWLDS--HSTCPLCRYRVD 125 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~Cg--H---~FH~~CI~~Wl~~--~~tCPlCR~~v~ 125 (381)
.+...|.||+++.. +.+ ++| |. | .||..||.+|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34568999999843 333 577 65 4 8999999999964 678999998874
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.37 E-value=8.8e-08 Score=72.06 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=44.6
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS 132 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~ 132 (381)
+.|+||++.+.++ ++++.|||.|...||.+|+..+.+||+++.++..+++.+.
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEEC
Confidence 5799999999876 4552399999999999999988889999999987776543
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2.5e-07 Score=70.78 Aligned_cols=44 Identities=34% Similarity=0.787 Sum_probs=36.0
Q ss_pred CCcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccCC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
+...|.||++...+ +..+| |||. ||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 45689999998643 46788 9999 99999984 4689999998854
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.30 E-value=1.1e-07 Score=74.92 Aligned_cols=43 Identities=30% Similarity=0.712 Sum_probs=35.6
Q ss_pred CcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccCC
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
+..|+||++.+.+ +..+| |||. ||..|+..|. .||+||.++..
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~~----~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQLQ----SCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTCS----BCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhcC----cCCCCCchhhC
Confidence 3479999998654 46778 9999 9999999873 89999998854
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.22 E-value=3.5e-07 Score=90.63 Aligned_cols=43 Identities=28% Similarity=0.768 Sum_probs=36.5
Q ss_pred CCcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
++..|+||++.+..+ ..+| |||. ||..|+..| ..||+||.++.
T Consensus 294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 346899999998654 5678 9999 999999998 67999999885
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.81 E-value=1.1e-05 Score=66.54 Aligned_cols=46 Identities=28% Similarity=0.575 Sum_probs=37.8
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCC
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDP 126 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~ 126 (381)
-|.+|--++ ....+.+| |+|+||.+|+..|.++ .++||.|+.++..
T Consensus 3 fC~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 488887666 34568899 9999999999999855 6889999998853
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.80 E-value=1.6e-05 Score=75.00 Aligned_cols=49 Identities=22% Similarity=0.518 Sum_probs=40.1
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCC--CCCCccccccCCC
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH--STCPLCRYRVDPE 127 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPlCR~~v~~~ 127 (381)
-..|.||.+.+..+ ..+++|+|.||..|+..|++.+ ..||.|+..+..+
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 45899999998866 3445699999999999999875 4899999987543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.98 E-value=0.024 Score=46.19 Aligned_cols=48 Identities=19% Similarity=0.442 Sum_probs=36.7
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
+-..|-.|+-..+ .++.. ..|.+|..|+...|.....||+|++++..+
T Consensus 27 G~~nCKsCWf~~k---~LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK---GLVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS---SEEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccC---Ceeee--cchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3457999985532 33321 359999999999999999999999988544
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.88 E-value=0.031 Score=44.62 Aligned_cols=35 Identities=17% Similarity=0.419 Sum_probs=25.8
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHH
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W 110 (381)
++..|.||++.+..+....-+. |+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3468999998753333333466 9999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.93 E-value=0.16 Score=38.36 Aligned_cols=46 Identities=30% Similarity=0.482 Sum_probs=33.4
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRV 124 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v 124 (381)
.+..|.||.+. ++ +...-.|...||..|+...|.. .-.||.|....
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34579999753 44 4445569999999999988765 34799997543
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.29 E-value=0.088 Score=39.01 Aligned_cols=49 Identities=22% Similarity=0.477 Sum_probs=35.0
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhc-----CCCCCCcccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-----SHSTCPLCRY 122 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-----~~~tCPlCR~ 122 (381)
.+...|+||...+.+....+..-.|..-||..|+.--.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 445679999998865544444446999999999864321 3567999965
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=87.10 E-value=0.3 Score=44.06 Aligned_cols=49 Identities=22% Similarity=0.433 Sum_probs=35.8
Q ss_pred cccccccccccCCcc---eeecCCCCceeChhcHHHH------hc-----CCCCCCccccccC
Q 016846 77 LECAVCLTRFEPTEV---LRLLPKCKHAFHVECVDTW------LD-----SHSTCPLCRYRVD 125 (381)
Q Consensus 77 ~~C~ICle~~~~~~~---v~~lp~CgH~FH~~CI~~W------l~-----~~~tCPlCR~~v~ 125 (381)
..|+||...|.+++. .+..-.|..-||..|+.-- +. ....||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 369999999987763 5555569999999998431 11 1678999987543
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.11 E-value=0.3 Score=37.24 Aligned_cols=51 Identities=18% Similarity=0.376 Sum_probs=35.6
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCccccccC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRVD 125 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v~ 125 (381)
.+...|.||..... ++.++..-.|.-.||..|+..-+.. ...||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34456999988754 3334444469999999999765432 457999987664
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.53 E-value=0.58 Score=34.51 Aligned_cols=44 Identities=27% Similarity=0.643 Sum_probs=31.7
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRY 122 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~ 122 (381)
.+..|.||... + .+...-.|...||..|+..-+.. .-.||.|..
T Consensus 10 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 44579999873 3 34445569999999999875543 347999965
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.63 E-value=0.52 Score=34.78 Aligned_cols=47 Identities=26% Similarity=0.549 Sum_probs=32.2
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRV 124 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v 124 (381)
..+..|.||.+. ++ +...-.|...||..|+..-+.. .-.||.|....
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345579999863 33 3344458899999999865543 34699997643
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=84.62 E-value=0.53 Score=42.63 Aligned_cols=47 Identities=32% Similarity=0.470 Sum_probs=33.9
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRV 124 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v 124 (381)
..+..|.+|... + .+...-.|...||..|+..-+.. .-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 344579999854 3 35556679999999999876654 34799997643
No 82
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.54 E-value=0.5 Score=52.41 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=46.7
Q ss_pred CCCCcccccccccccCCcceeecCCCC-ceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCK-HAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS 132 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~Cg-H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~ 132 (381)
..+.+.|||-++-+.+| +++| .| +.|-..+|.+||..+.+||.=|.++...++.+.
T Consensus 888 iP~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred CcHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence 34567899999999887 5677 76 689999999999999999999999987666544
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=84.11 E-value=0.57 Score=41.57 Aligned_cols=45 Identities=33% Similarity=0.568 Sum_probs=32.8
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccccc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRV 124 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v 124 (381)
+..|.+|.+. ++ +...-.|.-.||..|+..-+.. .-.||.|+..-
T Consensus 4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4579999854 44 4455569999999999876654 34699997643
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=83.53 E-value=0.94 Score=36.16 Aligned_cols=34 Identities=21% Similarity=0.546 Sum_probs=22.3
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHH
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W 110 (381)
.+..|.||-- +...+....- -|+-+||..|+.+-
T Consensus 14 ~D~~C~VC~~-~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEV-WTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCC-CCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCcccCcccc-ccccceeccc-cccccccHhhcccc
Confidence 4568999952 3333222111 38999999999985
No 85
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=82.30 E-value=0.58 Score=34.61 Aligned_cols=51 Identities=20% Similarity=0.563 Sum_probs=35.3
Q ss_pred CCCcccccccccc-cCCcceeecCCCCceeChhcHHHHhc-------CCCCCCcccccc
Q 016846 74 KDGLECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLD-------SHSTCPLCRYRV 124 (381)
Q Consensus 74 ~~~~~C~ICle~~-~~~~~v~~lp~CgH~FH~~CI~~Wl~-------~~~tCPlCR~~v 124 (381)
.++..|.||.... .....+.....|.-.||..|+..-+. ..-.||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3456899999764 23345556667999999999986432 245799996543
No 86
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.88 E-value=0.49 Score=34.20 Aligned_cols=46 Identities=24% Similarity=0.619 Sum_probs=31.7
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRY 122 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~ 122 (381)
...+..|.||.+. ++. ...-.|...||..|+..-|.. .-.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g~l-l~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQL-LMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCC-EECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeE-EEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3445679999874 333 344469999999999865543 335998854
No 87
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.73 E-value=1.4 Score=33.99 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=33.1
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHh-----cCCCCCCcccccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL-----DSHSTCPLCRYRV 124 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl-----~~~~tCPlCR~~v 124 (381)
+...| ||...+......+..-.|..-||..|+.--. .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 44467 9998875444444444699999999995321 1356899997654
No 88
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=79.75 E-value=1 Score=36.28 Aligned_cols=45 Identities=18% Similarity=0.397 Sum_probs=31.3
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcC---CCCCCcccc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS---HSTCPLCRY 122 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~ 122 (381)
...| ||......+..+ ..-.|.-.||..|+..-+.. ...||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3568 898776555444 44569999999999753322 457999964
No 89
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=79.24 E-value=0.44 Score=39.04 Aligned_cols=48 Identities=25% Similarity=0.511 Sum_probs=33.9
Q ss_pred cccccccccccCCcceeecC-CCCceeChhcHHHH------h----cCCCCCCcccccc
Q 016846 77 LECAVCLTRFEPTEVLRLLP-KCKHAFHVECVDTW------L----DSHSTCPLCRYRV 124 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp-~CgH~FH~~CI~~W------l----~~~~tCPlCR~~v 124 (381)
..|.||...+.+....+..- .|.--||..|+.-- + .....||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46999999986655555553 58899999998532 1 1356799997643
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.99 E-value=1.2 Score=36.21 Aligned_cols=46 Identities=26% Similarity=0.641 Sum_probs=30.2
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCR 121 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR 121 (381)
++..|.||.+.-+..+.+ ....|+..||..|+...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll-~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQF-FCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSE-ECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCe-ECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 445899998874333234 33459999999999877642 23466553
No 91
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.98 E-value=1.2 Score=31.28 Aligned_cols=44 Identities=34% Similarity=0.679 Sum_probs=30.1
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRY 122 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~ 122 (381)
.|.||...-... .+...-.|...||..|+..=+.. .-.||.|..
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998764333 34444569999999999764443 336999964
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=78.61 E-value=0.67 Score=34.61 Aligned_cols=44 Identities=34% Similarity=0.614 Sum_probs=31.4
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRY 122 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~ 122 (381)
.+..|.||.+. ++ +...-.|...||..|+..-|.. .-.||.|..
T Consensus 7 ~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 45579999864 33 3444469999999999865543 346999965
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=76.99 E-value=1.2 Score=36.51 Aligned_cols=45 Identities=27% Similarity=0.648 Sum_probs=31.6
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRY 122 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~ 122 (381)
.|.||.+.-.+.+.+...-.|...||..|+..-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588888653333445555569999999999866544 347999974
No 94
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=76.49 E-value=0.66 Score=40.59 Aligned_cols=49 Identities=22% Similarity=0.515 Sum_probs=33.8
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHh-----cCCCCCCccccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL-----DSHSTCPLCRYR 123 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl-----~~~~tCPlCR~~ 123 (381)
.+...| ||..........+..-.|...||..|+.--. .....||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345579 9998875444455555699999999995321 235689999763
No 95
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=75.98 E-value=1.5 Score=31.13 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=30.7
Q ss_pred ccccccccccCCcceeecC-CCCceeChhcHHHHh----cCCCCCCccc
Q 016846 78 ECAVCLTRFEPTEVLRLLP-KCKHAFHVECVDTWL----DSHSTCPLCR 121 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp-~CgH~FH~~CI~~Wl----~~~~tCPlCR 121 (381)
.|.+|..++.++...+..- .|.--||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4789998886555555544 588899999985321 3567899985
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.69 E-value=2.5 Score=33.78 Aligned_cols=46 Identities=26% Similarity=0.636 Sum_probs=32.7
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCccccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYR 123 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~ 123 (381)
..+..|.+|... ++ +...-.|.-.||..|+..=|.. .-.||.|...
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345579999865 43 3444568999999999876644 3469999753
No 97
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=75.24 E-value=3.6 Score=32.60 Aligned_cols=39 Identities=26% Similarity=0.545 Sum_probs=29.3
Q ss_pred CCCcccccccccccCCcceeecC-CCCceeChhcHHHHhcC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLP-KCKHAFHVECVDTWLDS 113 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp-~CgH~FH~~CI~~Wl~~ 113 (381)
...+.|.+|.+.+++..-|. .| .=.|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHh
Confidence 34468999999998876553 22 22599999999988864
No 98
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.18 E-value=0.95 Score=33.03 Aligned_cols=46 Identities=24% Similarity=0.651 Sum_probs=32.3
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRV 124 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v 124 (381)
.+..|.||... ++. ...-.|...||..|+..-+.. .-.||.|....
T Consensus 4 ~~~~C~vC~~~---g~l-l~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQL-LMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSC-EECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcE-EEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 34579999874 433 344469999999999865543 34699996644
No 99
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.74 E-value=1.2 Score=33.74 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=33.9
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHh----cCCCCCCcccccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL----DSHSTCPLCRYRV 124 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl----~~~~tCPlCR~~v 124 (381)
.+...| ||......++..+..-.|..-||..|+.--- .....||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 344569 7988776554444555699999999986532 2356799997543
No 100
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=74.07 E-value=2.1 Score=32.03 Aligned_cols=47 Identities=21% Similarity=0.448 Sum_probs=32.8
Q ss_pred CCcccccccccccCCcceeecC-CCCceeChhcHHHH------hc----CCCCCCccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLP-KCKHAFHVECVDTW------LD----SHSTCPLCR 121 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp-~CgH~FH~~CI~~W------l~----~~~tCPlCR 121 (381)
....|++|..++.+.+..+..- .|.--||..|+.-- |. ....||.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 4457999999987776666665 69999999998422 11 144688885
No 101
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=73.95 E-value=1.1 Score=35.42 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=35.7
Q ss_pred CCcccccccccc-cCCcceeecCCCCceeChhcHHHHhc--CCCCCCccccccCCC
Q 016846 75 DGLECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLD--SHSTCPLCRYRVDPE 127 (381)
Q Consensus 75 ~~~~C~ICle~~-~~~~~v~~lp~CgH~FH~~CI~~Wl~--~~~tCPlCR~~v~~~ 127 (381)
++..|.||...- ...+.+...-.|.-.||..|+..-+. ..-.||.|.......
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 456899998753 23345555566989999999975432 244699997755433
No 102
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.37 E-value=8.2 Score=31.01 Aligned_cols=51 Identities=20% Similarity=0.475 Sum_probs=35.8
Q ss_pred CcccccccccccCC---cceeecCCCCceeChhcHHHHh-cCCCCCCccccccCC
Q 016846 76 GLECAVCLTRFEPT---EVLRLLPKCKHAFHVECVDTWL-DSHSTCPLCRYRVDP 126 (381)
Q Consensus 76 ~~~C~ICle~~~~~---~~v~~lp~CgH~FH~~CI~~Wl-~~~~tCPlCR~~v~~ 126 (381)
...|.||-+.+-.. +..+..-.|+--.|..|.+-=. +.++.||.|+..+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 34799999986332 3333333578789999987543 457899999998853
No 103
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=72.14 E-value=3.5 Score=35.67 Aligned_cols=46 Identities=20% Similarity=0.429 Sum_probs=32.7
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhc-----------CCCCCCcccc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-----------SHSTCPLCRY 122 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-----------~~~tCPlCR~ 122 (381)
+..+..|.||.+. ++.+ ..-.|...||..||..-+. ..-.||.|..
T Consensus 60 Dg~~d~C~vC~~G---G~Ll-cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLI-CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEE-ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEE-eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3445689999875 4433 4445999999999997653 2447999974
No 104
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=70.59 E-value=2.2 Score=42.42 Aligned_cols=51 Identities=24% Similarity=0.571 Sum_probs=35.0
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhc---C--CCCCCccccccCCCcccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD---S--HSTCPLCRYRVDPEDILL 131 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~---~--~~tCPlCR~~v~~~~~~~ 131 (381)
+.|||-+..+..+ ++-.. |.|.-|++ +..||. + ...||+|.+.+..+++..
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred ecCCCcccccccc--CcCCc-CCCcceEC-HHHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 5799988887665 56665 99985444 334443 2 457999999887777643
No 105
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.90 E-value=3.6 Score=32.96 Aligned_cols=46 Identities=26% Similarity=0.532 Sum_probs=29.0
Q ss_pred CCCcccccccccccCCcceeecCC--CC-ceeChhcHHHHhcC----CCCCCcccccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPK--CK-HAFHVECVDTWLDS----HSTCPLCRYRV 124 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~--Cg-H~FH~~CI~~Wl~~----~~tCPlCR~~v 124 (381)
.+..-| ||..... ++ ++..-. |. ..||..|+. |.. +..||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 344568 9988653 33 333334 54 579999997 332 45799997643
No 106
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.87 E-value=2.1 Score=32.54 Aligned_cols=47 Identities=23% Similarity=0.537 Sum_probs=31.9
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHH---------hcCCCCCCcccccc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW---------LDSHSTCPLCRYRV 124 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W---------l~~~~tCPlCR~~v 124 (381)
...| ||...+.....+ ..-.|..-||..|+.-- ......||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI-~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMI-CCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEE-ECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEE-EeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3568 899887644444 44459999999998422 12467899997643
No 107
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=69.68 E-value=1.9 Score=32.82 Aligned_cols=49 Identities=20% Similarity=0.456 Sum_probs=33.5
Q ss_pred CCCcccccccccc-cCCcceeecCCCCceeChhcHHHHhc--CCCCCCcccc
Q 016846 74 KDGLECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLD--SHSTCPLCRY 122 (381)
Q Consensus 74 ~~~~~C~ICle~~-~~~~~v~~lp~CgH~FH~~CI~~Wl~--~~~tCPlCR~ 122 (381)
.++..|.||.+.- .+.+.+...-.|.-.||..|+..-.. ..-.||.|..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3456899998753 33445556667999999999975321 2346999965
No 108
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=69.09 E-value=2.4 Score=42.00 Aligned_cols=50 Identities=22% Similarity=0.512 Sum_probs=34.2
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhc---C--CCCCCccccccCCCccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD---S--HSTCPLCRYRVDPEDIL 130 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~---~--~~tCPlCR~~v~~~~~~ 130 (381)
+.|||-+..+..+ ++-.. |.|.=|.+ +..||. + .-.||+|.+.+..+++.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 4699888887665 56665 99984443 344443 2 45799999998777654
No 109
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.45 E-value=1.7 Score=34.67 Aligned_cols=48 Identities=27% Similarity=0.524 Sum_probs=33.2
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCccccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYR 123 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~ 123 (381)
+...|.||...-.. ..+...-.|...||..|+..=|.. .-.||.|...
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34579999876433 334455569999999999854433 3469999654
No 110
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.42 E-value=1.7 Score=34.35 Aligned_cols=49 Identities=22% Similarity=0.497 Sum_probs=34.8
Q ss_pred CcccccccccccC-CcceeecCCCCceeChhcHHHHhc--------CCCCCCcccccc
Q 016846 76 GLECAVCLTRFEP-TEVLRLLPKCKHAFHVECVDTWLD--------SHSTCPLCRYRV 124 (381)
Q Consensus 76 ~~~C~ICle~~~~-~~~v~~lp~CgH~FH~~CI~~Wl~--------~~~tCPlCR~~v 124 (381)
+..|.||...-.. ...+...-.|...||..|+..-|. ..-.|+.|....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 3479999976432 245556667999999999987553 245799997654
No 111
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=68.39 E-value=1.9 Score=32.54 Aligned_cols=47 Identities=19% Similarity=0.478 Sum_probs=31.7
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHh---cCCCCCCcccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL---DSHSTCPLCRY 122 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl---~~~~tCPlCR~ 122 (381)
.+...| ||...+. +...+..-.|..-||..|+.--. .....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 445578 9988765 33344444599999999986432 23567999964
No 112
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=67.01 E-value=1.1 Score=37.76 Aligned_cols=46 Identities=24% Similarity=0.496 Sum_probs=31.8
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRY 122 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~ 122 (381)
..|..|...|..-..--....||.+||..|.........+|-.|-.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 4799999998654433445569999999998776555667888844
No 113
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=66.39 E-value=2 Score=38.46 Aligned_cols=43 Identities=26% Similarity=0.681 Sum_probs=30.3
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCccccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYR 123 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~ 123 (381)
..|.+|.+. ++.+ ..-.|...||..|+..=+.. .-.||.|+..
T Consensus 3 ~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC---SSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC---Ccee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 469999855 4433 44458899999999765543 3369999754
No 114
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=66.32 E-value=5.2 Score=31.57 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=34.0
Q ss_pred CCCcccccccccccCCcceeecCCCCceeChhcHHHHhc-------CCCCCCcccccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-------SHSTCPLCRYRV 124 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-------~~~tCPlCR~~v 124 (381)
.+...|.+|...|..-..--....||++||..|....+. ...+|-.|-..+
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 344589999999876543344456999999999876431 123577775443
No 115
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=65.49 E-value=5.3 Score=30.90 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=26.7
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHH
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W 110 (381)
+...|.+|...|..-..--....||.+||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 334799999999755433345569999999997654
No 116
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=65.04 E-value=2.5 Score=32.44 Aligned_cols=48 Identities=25% Similarity=0.457 Sum_probs=31.7
Q ss_pred CCcccccccccccCCcceeecC--CCCceeChhcHHHHh---------cCCCCCCcccccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLP--KCKHAFHVECVDTWL---------DSHSTCPLCRYRV 124 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp--~CgH~FH~~CI~~Wl---------~~~~tCPlCR~~v 124 (381)
+...| ||-.....+..+ ..- .|..-||..|+.--- ..+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI-~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEE-EECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 44578 898875444333 333 599999999985321 2356799997643
No 117
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=64.89 E-value=5.6 Score=30.89 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=26.9
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHH
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W 110 (381)
+...|.+|...|..-..--....||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345799999999765433344569999999997764
No 118
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.44 E-value=4.3 Score=34.07 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=25.9
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHH
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W 110 (381)
...|.+|...|..-..--....||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 34799999999755433345569999999997654
No 119
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=64.04 E-value=4.7 Score=31.85 Aligned_cols=49 Identities=18% Similarity=0.394 Sum_probs=33.1
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcC------CCCCCcccccc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS------HSTCPLCRYRV 124 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~------~~tCPlCR~~v 124 (381)
...|.+|...|..-..--....||++||..|...+... ..+|-.|-..+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 34799999998755433445569999999998765421 23566665433
No 120
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=63.93 E-value=1.4 Score=34.45 Aligned_cols=42 Identities=29% Similarity=0.689 Sum_probs=25.2
Q ss_pred cccccccccC--CcceeecCCCCceeChhcHHHHhcCC--CCCCcc
Q 016846 79 CAVCLTRFEP--TEVLRLLPKCKHAFHVECVDTWLDSH--STCPLC 120 (381)
Q Consensus 79 C~ICle~~~~--~~~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPlC 120 (381)
||-|-..+.. ....+..|.|++.||..|-..|=++| .+|..-
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHH
Confidence 6655443321 12234566799999999999884443 345443
No 121
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.25 E-value=4.1 Score=37.00 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=26.4
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHH
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W 110 (381)
+..|.+|...|..-..--....||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 35899999998655433455579999999997654
No 122
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=62.43 E-value=6.1 Score=29.84 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=25.2
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHH
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W 110 (381)
..|.+|...|..-..--....||.+||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 3799999998755433344569999999997543
No 123
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=61.82 E-value=4.6 Score=37.00 Aligned_cols=49 Identities=18% Similarity=0.415 Sum_probs=33.2
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhc--------CCCCCCcccccc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD--------SHSTCPLCRYRV 124 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~--------~~~tCPlCR~~v 124 (381)
+..|.+|...|..-..--....||++||..|...... ....|-.|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 3589999999876544445557999999999775431 123576665443
No 124
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=61.24 E-value=8.1 Score=29.26 Aligned_cols=45 Identities=27% Similarity=0.538 Sum_probs=28.6
Q ss_pred CCcccccccccccCCcceeecCC--CC-ceeChhcHHHHhcC----CCCCCcccccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPK--CK-HAFHVECVDTWLDS----HSTCPLCRYRV 124 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~--Cg-H~FH~~CI~~Wl~~----~~tCPlCR~~v 124 (381)
+..-| ||..... +. ++..-. |. ..||..|+. |.. +..||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 44568 8988643 33 333334 55 589999997 332 45799997643
No 125
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=61.21 E-value=8.1 Score=32.86 Aligned_cols=46 Identities=22% Similarity=0.423 Sum_probs=31.5
Q ss_pred CCCCcccccccccccCCcceeecCCCCceeChhcHHHHh-----------cCCCCCCcccc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL-----------DSHSTCPLCRY 122 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl-----------~~~~tCPlCR~ 122 (381)
+..+..|.||.+. ++ +...-.|-..||..||..-+ ...-.|++|..
T Consensus 54 Dg~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3344579999865 33 33444699999999999752 12357999954
No 126
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=60.36 E-value=9.5 Score=31.05 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=28.6
Q ss_pred cccccccccc-----cCCcceeecCCCCceeChhcHHHH------h-cCCCCCCccc
Q 016846 77 LECAVCLTRF-----EPTEVLRLLPKCKHAFHVECVDTW------L-DSHSTCPLCR 121 (381)
Q Consensus 77 ~~C~ICle~~-----~~~~~v~~lp~CgH~FH~~CI~~W------l-~~~~tCPlCR 121 (381)
..|.+|+..- ..++.+.....|+..||..|+..+ + ...-.||.|+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4799998752 123345555569999999999532 2 2244566664
No 127
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=60.12 E-value=2.9 Score=30.99 Aligned_cols=42 Identities=26% Similarity=0.562 Sum_probs=30.3
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLC 120 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlC 120 (381)
.|-.|+..|.... ....++|++.||.+|=.---+.-..||-|
T Consensus 17 ~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 5999999985432 24577899999999954433444579988
No 128
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.03 E-value=6.6 Score=30.42 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=24.5
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHH
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDT 109 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~ 109 (381)
...|.+|...|..-..--....||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3479999999865443334446999999999554
No 129
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=58.97 E-value=3 Score=32.34 Aligned_cols=44 Identities=34% Similarity=0.720 Sum_probs=28.9
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcC----C-CCCCcccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----H-STCPLCRY 122 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~-~tCPlCR~ 122 (381)
.|.||...-. +..+...-.|...||..|+..-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4666665432 2344455569999999999876543 2 47999975
No 130
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=56.47 E-value=7.1 Score=33.26 Aligned_cols=49 Identities=14% Similarity=0.290 Sum_probs=32.4
Q ss_pred CCccccccccccc-CCcceeecCCCCceeChhcHHHHhcC----CCCCCccccc
Q 016846 75 DGLECAVCLTRFE-PTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYR 123 (381)
Q Consensus 75 ~~~~C~ICle~~~-~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~ 123 (381)
+...|.+|..+|. ....-.....|.|.+|..|-..-... .-.|-+|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 4458999999983 33333455569999999996543111 1248888664
No 131
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=55.64 E-value=9.2 Score=31.27 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=23.0
Q ss_pred cccccccccc------CCcceeecCCCCceeChhcHHHH
Q 016846 78 ECAVCLTRFE------PTEVLRLLPKCKHAFHVECVDTW 110 (381)
Q Consensus 78 ~C~ICle~~~------~~~~v~~lp~CgH~FH~~CI~~W 110 (381)
.|.||+..-. .++.++....|+..||..|+...
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 6999987541 12344444469999999999754
No 132
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=55.04 E-value=2.8 Score=31.35 Aligned_cols=46 Identities=22% Similarity=0.497 Sum_probs=28.5
Q ss_pred CcccccccccccCCcceeec-CCCCceeChhcHHHHh--------cCCCCCCcccc
Q 016846 76 GLECAVCLTRFEPTEVLRLL-PKCKHAFHVECVDTWL--------DSHSTCPLCRY 122 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~l-p~CgH~FH~~CI~~Wl--------~~~~tCPlCR~ 122 (381)
...| ||......+..+..- +.|..-||..|+.--- ..+..||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3567 797765555444321 1488889999984210 12467999974
No 133
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=54.90 E-value=2.6 Score=41.55 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcC-------CCCCCcccccc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-------HSTCPLCRYRV 124 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-------~~tCPlCR~~v 124 (381)
...|.+|...|..-..-..+..||++||..|....+.. ..+|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45799999988654332344469999999999765421 23577775433
No 134
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=54.46 E-value=2.1 Score=33.06 Aligned_cols=20 Identities=30% Similarity=0.818 Sum_probs=16.0
Q ss_pred CCCceeChhcHHHHhcCCCCCC
Q 016846 97 KCKHAFHVECVDTWLDSHSTCP 118 (381)
Q Consensus 97 ~CgH~FH~~CI~~Wl~~~~tCP 118 (381)
.|+|.||..|...|-. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999999854 4553
No 135
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=54.32 E-value=5.3 Score=37.14 Aligned_cols=44 Identities=36% Similarity=0.756 Sum_probs=26.6
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcC-----CCCCCcccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-----HSTCPLCRY 122 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-----~~tCPlCR~ 122 (381)
.|.+|...-..+ .+...-.|...||..|+..=|.. .-.||.|..
T Consensus 176 ~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 588887643223 33445569999999999965543 236999964
No 136
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=53.23 E-value=1.9 Score=28.60 Aligned_cols=17 Identities=18% Similarity=0.747 Sum_probs=11.2
Q ss_pred CCCcccccccccccCCc
Q 016846 74 KDGLECAVCLTRFEPTE 90 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~ 90 (381)
.+++.||||+..+...+
T Consensus 3 ~EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSAD 19 (34)
T ss_dssp SEEEECTTTCCEESSHH
T ss_pred CcccCCcHHHHHcCCHH
Confidence 34567888887775543
No 137
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.66 E-value=5.5 Score=30.72 Aligned_cols=44 Identities=32% Similarity=0.712 Sum_probs=29.7
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcC-----CCCCCcccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-----HSTCPLCRY 122 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-----~~tCPlCR~ 122 (381)
.|.||...-. +..+...-.|...||..|+..=|.. .-.||.|..
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6888986433 3344455569999999999864433 346999864
No 138
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=51.91 E-value=14 Score=30.28 Aligned_cols=46 Identities=24% Similarity=0.468 Sum_probs=29.7
Q ss_pred CCCcccccccccccCCcceeecC--CCCceeChhcHHHHhcC----CCCCCccccccC
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLP--KCKHAFHVECVDTWLDS----HSTCPLCRYRVD 125 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp--~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v~ 125 (381)
..+..|.+|.+. ++ +...- .|...||..|+. |.. .-.||.|.-.+.
T Consensus 13 ~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 445579999842 33 33433 488999999997 443 235887764443
No 139
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=50.24 E-value=13 Score=25.94 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 016846 4 VVGVLTTMFSMTFLLLLYAKHC 25 (381)
Q Consensus 4 II~Vl~iif~l~~llliyik~c 25 (381)
+++ +++++++.+++++|++..
T Consensus 18 vVG-vll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 18 VVG-ILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHhheehh
Confidence 444 334444445555555543
No 140
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=49.93 E-value=6.1 Score=29.79 Aligned_cols=44 Identities=34% Similarity=0.720 Sum_probs=28.4
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcC-----CCCCCcccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-----HSTCPLCRY 122 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-----~~tCPlCR~ 122 (381)
.|.||...-. +..+...-.|...||..|+..=|.. .-.||.|..
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4567765422 2344455569999999999865433 336999964
No 141
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.06 E-value=24 Score=25.42 Aligned_cols=42 Identities=21% Similarity=0.458 Sum_probs=29.3
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
...|+.|-+.+...+.++.. -+..||..|+ .|-.|..++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGCF--------VCSTCRAQLRGQ 46 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccCC--------cccccCCcCCcC
Confidence 34799999988764433222 5788999883 588898888543
No 142
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=46.61 E-value=8 Score=28.21 Aligned_cols=43 Identities=26% Similarity=0.525 Sum_probs=27.2
Q ss_pred CCcccccccccccCCcceeecCC--CC-ceeChhcHHHHhcC----CCCCCcccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPK--CK-HAFHVECVDTWLDS----HSTCPLCRY 122 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~--Cg-H~FH~~CI~~Wl~~----~~tCPlCR~ 122 (381)
+..-| ||..... + .++..-. |. ..||..|+. |.. ...||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34457 8988643 3 3434444 44 689999997 332 446999964
No 143
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=46.30 E-value=5.1 Score=32.40 Aligned_cols=45 Identities=22% Similarity=0.497 Sum_probs=30.1
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCccccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYR 123 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~ 123 (381)
.|.||...-.. +.+.....|...||..|+..-|.. .-.||.|..-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 47777765433 344455569999999999865543 3469999653
No 144
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=45.51 E-value=9 Score=27.91 Aligned_cols=43 Identities=30% Similarity=0.584 Sum_probs=27.8
Q ss_pred CCcccccccccccCCcceeecCC--CC-ceeChhcHHHHhcC----CCCCCcccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPK--CK-HAFHVECVDTWLDS----HSTCPLCRY 122 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~--Cg-H~FH~~CI~~Wl~~----~~tCPlCR~ 122 (381)
+..-| ||..... ++ ++..-. |. ..||..|+. |.. +..||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34467 8988642 33 444445 65 689999997 332 447999964
No 145
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=44.69 E-value=11 Score=28.54 Aligned_cols=47 Identities=28% Similarity=0.546 Sum_probs=31.8
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhc-----CCCCCCcccccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-----SHSTCPLCRYRV 124 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-----~~~tCPlCR~~v 124 (381)
..| ||...+......+..-.|.--||..|+.---. ....||.|+...
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 345 89887754444445556999999999954321 356799997654
No 146
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.33 E-value=32 Score=25.17 Aligned_cols=42 Identities=19% Similarity=0.432 Sum_probs=31.7
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
...|+.|-+.+...+.+.. -+..||..|+ .|-.|..++....
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~~ 50 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTPGG 50 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCTTS
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCCCc
Confidence 3479999999987665543 5788998883 4899998886543
No 147
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=43.25 E-value=22 Score=24.71 Aligned_cols=6 Identities=17% Similarity=0.501 Sum_probs=2.4
Q ss_pred hhhHHH
Q 016846 4 VVGVLT 9 (381)
Q Consensus 4 II~Vl~ 9 (381)
..+|+.
T Consensus 14 A~gVVg 19 (44)
T 2ks1_B 14 ATGMVG 19 (44)
T ss_dssp THHHHH
T ss_pred EeehhH
Confidence 334443
No 148
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=43.25 E-value=12 Score=38.24 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=33.3
Q ss_pred CCcccccccccccCCcceeecCCCCceeChhcHHHHhc-----CCCCCCccccccC
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-----SHSTCPLCRYRVD 125 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-----~~~tCPlCR~~v~ 125 (381)
+...| ||...+......+.+-.|.--||..|+.---. ....||.|+....
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 33456 99988754444445556999999999953221 2468999986543
No 149
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.24 E-value=30 Score=24.89 Aligned_cols=42 Identities=17% Similarity=0.412 Sum_probs=30.6
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
..|+.|-+.+...+.++.. -+..||..|+ .|-.|..++....
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~~ 47 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTKS 47 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCCc
Confidence 4799999998876544332 4788998884 5889988886553
No 150
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.46 E-value=28 Score=25.01 Aligned_cols=42 Identities=17% Similarity=0.393 Sum_probs=30.3
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
..|+.|-+.+...+.+... -+..||..|+ .|-.|..++....
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~~ 47 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEY--GGQTWHEHCF--------LCSGCEQPLGSRS 47 (72)
T ss_dssp CBCSSSCCBCCSSSCEECS--TTCCEETTTC--------BCTTTCCBTTTSC
T ss_pred CCCccCCCccccCccEEEE--CccccCcccC--------eECCCCCcCCCCc
Confidence 4799999998865443322 5788998884 5888988886554
No 151
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=40.61 E-value=3.8 Score=33.63 Aligned_cols=46 Identities=22% Similarity=0.534 Sum_probs=30.9
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRV 124 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v 124 (381)
.|.||...-..+ .+...-.|...||..|+..=|.. .-.||.|...+
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 477887754333 34444469999999999865443 33699996544
No 152
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.96 E-value=31 Score=25.16 Aligned_cols=43 Identities=21% Similarity=0.465 Sum_probs=30.7
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
...|+-|-+.+...+.+... -+..||..|+ .|-.|..++....
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~~ 53 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEGL 53 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGGGC
T ss_pred CCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCCCC
Confidence 34799999998765554322 5788999883 5888888876543
No 153
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.45 E-value=43 Score=24.11 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=30.2
Q ss_pred CcccccccccccC--CcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 76 GLECAVCLTRFEP--TEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 76 ~~~C~ICle~~~~--~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
...|+-|-+.+.. .+.++. . -+..||..|+ .|-.|..++....
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~-a-~~~~wH~~CF--------~C~~C~~~L~~~~ 49 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS-F-EERQWHNDCF--------NCKKCSLSLVGRG 49 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE-C-SSCEECTTTC--------BCSSSCCBCTTSC
T ss_pred CCCCcCCCccccCCCCcceEE-E-CCcccCcccC--------EeccCCCcCCCCc
Confidence 3479999999875 333322 2 5888999884 5889988886443
No 154
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=38.84 E-value=19 Score=31.32 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCcccccccccccCC-cceeecCCCCceeChhcHHHHhcCC--CCCCccccc
Q 016846 75 DGLECAVCLTRFEPT-EVLRLLPKCKHAFHVECVDTWLDSH--STCPLCRYR 123 (381)
Q Consensus 75 ~~~~C~ICle~~~~~-~~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPlCR~~ 123 (381)
+...|.+|..+|..- ..-.....|.|.+|..|- .|+... -.|-+|...
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 456899999986332 122344469999999997 344332 358888654
No 155
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=37.79 E-value=11 Score=29.92 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=27.7
Q ss_pred CCCcccccccccccCCcceeecCCCC---ceeChhcHHHHh--cCCCCCCc-ccc
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKCK---HAFHVECVDTWL--DSHSTCPL-CRY 122 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~Cg---H~FH~~CI~~Wl--~~~~tCPl-CR~ 122 (381)
.+..-| ||..... ++ ++..-.|. ..||..|+.--- .....||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 344568 9987533 33 33333444 679999996211 12457999 964
No 156
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=37.31 E-value=22 Score=23.63 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=5.1
Q ss_pred hhhHHHHHHHHH
Q 016846 4 VVGVLTTMFSMT 15 (381)
Q Consensus 4 II~Vl~iif~l~ 15 (381)
+++++..+.+++
T Consensus 16 ~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 16 IGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHH
T ss_pred EeehhHHHHHHH
Confidence 344444444433
No 157
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=37.04 E-value=28 Score=26.45 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=4.3
Q ss_pred CCceeChh
Q 016846 98 CKHAFHVE 105 (381)
Q Consensus 98 CgH~FH~~ 105 (381)
|.|.|-+.
T Consensus 59 C~hr~qk~ 66 (70)
T 2klu_A 59 SPHRFQKT 66 (70)
T ss_dssp CCCCCCCC
T ss_pred CcHHHhhc
Confidence 66655443
No 158
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=36.85 E-value=41 Score=23.30 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhc
Q 016846 4 VVGVLTTMFSMTFLLLLYAKHCK 26 (381)
Q Consensus 4 II~Vl~iif~l~~llliyik~c~ 26 (381)
+++-+++++++.+++++|.+..+
T Consensus 17 VVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHhhhhH
Confidence 34433444444455566665533
No 159
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=36.14 E-value=22 Score=25.34 Aligned_cols=42 Identities=21% Similarity=0.508 Sum_probs=30.8
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
...|+-|...+...+.+... =+..||..|+ .|-.|..++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 34799999998876654332 4778999885 588888877544
No 160
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=35.75 E-value=10 Score=26.64 Aligned_cols=41 Identities=20% Similarity=0.463 Sum_probs=26.7
Q ss_pred cccccccCCcceeecCCCCceeChhcHHHHh---cCCCCCCcccc
Q 016846 81 VCLTRFEPTEVLRLLPKCKHAFHVECVDTWL---DSHSTCPLCRY 122 (381)
Q Consensus 81 ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl---~~~~tCPlCR~ 122 (381)
||..... +...+..-.|..-||..|+.--- .....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6777654 33333444599999999986432 23567999964
No 161
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=35.72 E-value=12 Score=23.56 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=20.3
Q ss_pred ccccccccccCCcceeecCCCCceeChhcH
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECV 107 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI 107 (381)
.|+.|-..+-..+.+.. =|..||..|+
T Consensus 5 ~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred cCCccCCEEecceeEEE---CCeEecccCC
Confidence 69999998876665532 5788999884
No 162
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=35.47 E-value=15 Score=26.92 Aligned_cols=45 Identities=27% Similarity=0.487 Sum_probs=27.5
Q ss_pred CCcccccccccccCCcceeecCC--CC-ceeChhcHHHHh--cCCCCCCcccc
Q 016846 75 DGLECAVCLTRFEPTEVLRLLPK--CK-HAFHVECVDTWL--DSHSTCPLCRY 122 (381)
Q Consensus 75 ~~~~C~ICle~~~~~~~v~~lp~--Cg-H~FH~~CI~~Wl--~~~~tCPlCR~ 122 (381)
+..-| ||..... ++ ++..-. |. ..||..|+.--- ..+..||.|+.
T Consensus 10 e~~yC-~C~~~~~-g~-MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GE-MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-CC-eeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34467 8988642 43 334444 44 789999997311 12457999964
No 163
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=35.36 E-value=33 Score=34.24 Aligned_cols=46 Identities=24% Similarity=0.567 Sum_probs=32.3
Q ss_pred CCCCcccccccccccCCcceeecC--CCCceeChhcHHHHhcC----------CCCCCcccc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLP--KCKHAFHVECVDTWLDS----------HSTCPLCRY 122 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp--~CgH~FH~~CI~~Wl~~----------~~tCPlCR~ 122 (381)
+..+..|.+|-+. + .+...- .|...||..||+.++.. .-.|=+|.-
T Consensus 90 DG~~~yCr~C~~G---g-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSG---E-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCC---S-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCC---C-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 3345579999764 3 344444 69999999999998832 457988854
No 164
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.25 E-value=42 Score=24.77 Aligned_cols=42 Identities=17% Similarity=0.433 Sum_probs=31.0
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
..|+.|-+.+...+.++.. -+..||..|+ .|-.|..++....
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~~ 57 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGTGS 57 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTTSC
T ss_pred CcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCCCc
Confidence 4799999998866554332 5788998884 5889988886554
No 165
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=35.02 E-value=43 Score=23.25 Aligned_cols=9 Identities=11% Similarity=0.538 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 016846 16 FLLLLYAKH 24 (381)
Q Consensus 16 ~llliyik~ 24 (381)
+++++|.+.
T Consensus 28 ~~~~~~~RR 36 (44)
T 2l2t_A 28 LTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 333344433
No 166
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.98 E-value=23 Score=27.46 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=10.6
Q ss_pred ehhhHHHHHHHHHHHHHHHHH
Q 016846 3 VVVGVLTTMFSMTFLLLLYAK 23 (381)
Q Consensus 3 iII~Vl~iif~l~~llliyik 23 (381)
++++|+.+++++-++++++.+
T Consensus 13 Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554454444444
No 167
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=34.00 E-value=9.8 Score=28.32 Aligned_cols=49 Identities=24% Similarity=0.493 Sum_probs=27.4
Q ss_pred CCCCccccccccc-ccCCcceeecCCCCceeChhcHHHHh-cCCC---CCCcccc
Q 016846 73 HKDGLECAVCLTR-FEPTEVLRLLPKCKHAFHVECVDTWL-DSHS---TCPLCRY 122 (381)
Q Consensus 73 ~~~~~~C~ICle~-~~~~~~v~~lp~CgH~FH~~CI~~Wl-~~~~---tCPlCR~ 122 (381)
.++...|.||+.. |.++-.-... .|.-.||..|--.|- ..+. .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~-yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCS-YCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBT-TTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCcccc-ccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 4556689999984 5444222222 255566666766553 2222 3666654
No 168
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=33.25 E-value=28 Score=25.45 Aligned_cols=39 Identities=18% Similarity=0.439 Sum_probs=24.3
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
.|+.|-+.+...+.+.. -+..||..|+ .|-.|..++...
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~ 40 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPCL--------KCEKCGKTLTSG 40 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTTC--------BCTTTCCBCCTT
T ss_pred cCCCCCCEEECceEEEE---CCccccCCCC--------CccccCccCCCC
Confidence 47777777765544432 3677777763 477777776554
No 169
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.56 E-value=40 Score=25.24 Aligned_cols=43 Identities=30% Similarity=0.538 Sum_probs=31.4
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI 129 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 129 (381)
...|+.|-+.+...+.+.. -+..||..|+ .|-.|...+.....
T Consensus 15 ~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~~~~~ 57 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLWPGGY 57 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCCTTSE
T ss_pred CCCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcCCCce
Confidence 3479999999876655542 5778999883 58889888865543
No 170
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=32.48 E-value=15 Score=29.93 Aligned_cols=39 Identities=23% Similarity=0.584 Sum_probs=24.2
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v 124 (381)
..||+|..+++... ++.+|..|-.. +.....||-|..++
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBC
T ss_pred ccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHH
Confidence 47999998875432 23345555332 34455699998877
No 171
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=32.13 E-value=35 Score=23.72 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=18.7
Q ss_pred ehhhHHHHHHHHHHHHHHHHHhhcCCCC
Q 016846 3 VVVGVLTTMFSMTFLLLLYAKHCKRGNS 30 (381)
Q Consensus 3 iII~Vl~iif~l~~llliyik~c~rr~~ 30 (381)
|..+|+..++.++++++....+.++++.
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 4556666677777777666777777553
No 172
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.56 E-value=49 Score=24.75 Aligned_cols=39 Identities=23% Similarity=0.532 Sum_probs=29.9
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
...|+-|-+.+...+.+.. -+..||..|+ .|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 3479999999876666544 4788999883 5889988876
No 173
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.37 E-value=63 Score=23.02 Aligned_cols=41 Identities=22% Similarity=0.502 Sum_probs=29.8
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
...|..|-+.+.. +.+.. -+..||..|+ .|-.|..++....
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~~ 45 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLADIG 45 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSSSC
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCCCc
Confidence 3479999998873 33332 5788999884 5889988887654
No 174
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.71 E-value=59 Score=23.68 Aligned_cols=42 Identities=17% Similarity=0.419 Sum_probs=29.5
Q ss_pred cccccccccccC--CcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 77 LECAVCLTRFEP--TEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 77 ~~C~ICle~~~~--~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
..|+.|-+.+.. ...++.. -+..||..|+ .|-.|..++....
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~~~~ 49 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLVGKG 49 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCSSSC
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCCCCc
Confidence 479999999875 3233222 5788999884 5889988886443
No 175
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=30.65 E-value=31 Score=22.99 Aligned_cols=19 Identities=0% Similarity=0.125 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 016846 6 GVLTTMFSMTFLLLLYAKH 24 (381)
Q Consensus 6 ~Vl~iif~l~~llliyik~ 24 (381)
++++.++.-++++.-|.+.
T Consensus 14 alIiaIVVWtiv~ieYrk~ 32 (36)
T 1pi7_A 14 AIIIAIVVWSIVIIEGRGG 32 (36)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444333
No 176
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=30.23 E-value=29 Score=23.23 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHHH
Q 016846 4 VVGVLTTMFSMTFLLL 19 (381)
Q Consensus 4 II~Vl~iif~l~~lll 19 (381)
+++++..+.+++.+++
T Consensus 17 VvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 17 IFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHH
Confidence 4444444444443333
No 177
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.92 E-value=14 Score=30.32 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=16.7
Q ss_pred CCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846 97 KCKHAFHVECVDTWLDSHSTCPLCRYRVDP 126 (381)
Q Consensus 97 ~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~ 126 (381)
+||+.|. .=+.....||.|+.....
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 5999991 123345679999886543
No 178
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=28.72 E-value=34 Score=30.09 Aligned_cols=45 Identities=24% Similarity=0.534 Sum_probs=31.2
Q ss_pred CCCCcccccccccccCCcceeecC--CCCceeChhcHHHHhcC----------CCCCCccc
Q 016846 73 HKDGLECAVCLTRFEPTEVLRLLP--KCKHAFHVECVDTWLDS----------HSTCPLCR 121 (381)
Q Consensus 73 ~~~~~~C~ICle~~~~~~~v~~lp--~CgH~FH~~CI~~Wl~~----------~~tCPlCR 121 (381)
+..+..|.||-+. + .+...- .|...||..||+.++.. .-.|=+|.
T Consensus 76 DG~~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 76 DGYQSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp TSSBSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCcceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 3445679999764 3 444443 48899999999998743 33688884
No 179
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=27.93 E-value=31 Score=25.55 Aligned_cols=41 Identities=24% Similarity=0.531 Sum_probs=30.7
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
..|+.|-+.+...+.+.. -+..||..|+ .|-.|..++....
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~~ 48 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDSTT 48 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECSSC
T ss_pred CcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCCCC
Confidence 479999999876665433 5788998884 4888988886554
No 180
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=27.38 E-value=18 Score=29.59 Aligned_cols=12 Identities=25% Similarity=0.916 Sum_probs=10.8
Q ss_pred eChhcHHHHhcC
Q 016846 102 FHVECVDTWLDS 113 (381)
Q Consensus 102 FH~~CI~~Wl~~ 113 (381)
||..||..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 181
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=27.34 E-value=74 Score=24.31 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=12.7
Q ss_pred ccccccccccCCcceeecCCCCceeChhc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVEC 106 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~C 106 (381)
.|+.|-+.+.....++.. =+..||..|
T Consensus 7 ~C~~C~~~I~~~~~~~~a--~~~~~H~~C 33 (101)
T 2cup_A 7 GCVECRKPIGADSKEVHY--KNRFWHDTC 33 (101)
T ss_dssp BCSSSCCBCCSSSCEEEE--TTEEEETTT
T ss_pred cCcccCCcccCCceEEEE--CccChhhcC
Confidence 566666666432222111 245566555
No 182
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=27.23 E-value=18 Score=29.52 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=10.4
Q ss_pred eChhcHHHHhc
Q 016846 102 FHVECVDTWLD 112 (381)
Q Consensus 102 FH~~CI~~Wl~ 112 (381)
||..||..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 183
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=26.55 E-value=50 Score=24.97 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=23.8
Q ss_pred CCCcccccccccccCCcceeecCCC-CceeChhcHHHH
Q 016846 74 KDGLECAVCLTRFEPTEVLRLLPKC-KHAFHVECVDTW 110 (381)
Q Consensus 74 ~~~~~C~ICle~~~~~~~v~~lp~C-gH~FH~~CI~~W 110 (381)
.+..-|.||.++ ..++.+. | +-+||..|..+-
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 344579999887 3466776 9 789999997773
No 184
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.07 E-value=64 Score=24.45 Aligned_cols=41 Identities=24% Similarity=0.631 Sum_probs=30.3
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
..|+-|-+.+...+.+. . -+..||..|+ .|-.|...+....
T Consensus 16 ~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~~~ 56 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLSLGT 56 (91)
T ss_dssp CBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCCTTT
T ss_pred CcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCCCCC
Confidence 47999999988666543 2 6788999884 4788888776543
No 185
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.54 E-value=13 Score=27.17 Aligned_cols=36 Identities=25% Similarity=0.564 Sum_probs=25.1
Q ss_pred ccccccccccCCcceeecC--C--CCceeChhcHHHHhcC
Q 016846 78 ECAVCLTRFEPTEVLRLLP--K--CKHAFHVECVDTWLDS 113 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp--~--CgH~FH~~CI~~Wl~~ 113 (381)
.||-|.-.++..+....+. . |++.||+.|+..|-..
T Consensus 8 ~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 8 ECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 6898988887765432222 2 7788999898888543
No 186
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.04 E-value=11 Score=36.44 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=30.9
Q ss_pred CcccccccccccCCcceee-cCCCC--ceeChhcHHHHhcCCCCCCccccc
Q 016846 76 GLECAVCLTRFEPTEVLRL-LPKCK--HAFHVECVDTWLDSHSTCPLCRYR 123 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~-lp~Cg--H~FH~~CI~~Wl~~~~tCPlCR~~ 123 (381)
...||+|-..-... .++. -..=| |.+|..|-..|-.....||.|-..
T Consensus 182 ~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 34799998774333 1110 00123 668888999998888899999764
No 187
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.26 E-value=80 Score=23.80 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=29.7
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
...|+.|-+.+. ++.+. . -+..||..|+ .|-.|...+....
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~~~ 65 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--A-LGKSWHPEEF--------NCAHCKNTMAYIG 65 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--E-TTEEECTTTC--------BCSSSCCBCSSSC
T ss_pred CCCCccCCCEec-ceEEE--E-CCccccccCC--------ccCCCCCCCCCCE
Confidence 347999999985 33332 2 6889999884 5889998887544
No 188
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=23.93 E-value=57 Score=21.79 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=14.4
Q ss_pred ehhhHHHHHHHHHHHHHHHHHh
Q 016846 3 VVVGVLTTMFSMTFLLLLYAKH 24 (381)
Q Consensus 3 iII~Vl~iif~l~~llliyik~ 24 (381)
++...+.+++-.+|++++|++-
T Consensus 8 fiAt~Lfi~iPt~FLlilYvqT 29 (36)
T 3arc_M 8 LIATALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhee
Confidence 3444555666667788888775
No 189
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=23.88 E-value=43 Score=29.13 Aligned_cols=50 Identities=10% Similarity=0.210 Sum_probs=28.5
Q ss_pred CcccccccccccC-CcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 76 GLECAVCLTRFEP-TEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 76 ~~~C~ICle~~~~-~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
=+.|..|...+.. +...... =+..||..|..+-+..+..|..|...|...
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~--~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTK--SGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEE--TTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred CcccCCCCcccccCCceEEEe--CCccccccccccccccCCccccCCCccccC
Confidence 3567777666654 2222222 356677777666544333688887777543
No 190
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=23.88 E-value=33 Score=26.87 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=8.8
Q ss_pred ccccccccccCCcc
Q 016846 78 ECAVCLTRFEPTEV 91 (381)
Q Consensus 78 ~C~ICle~~~~~~~ 91 (381)
.||.|..++.....
T Consensus 4 ~CP~C~~~l~~~~~ 17 (81)
T 2jrp_A 4 TCPVCHHALERNGD 17 (81)
T ss_dssp CCSSSCSCCEECSS
T ss_pred CCCCCCCccccCCC
Confidence 57777777654433
No 191
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.80 E-value=95 Score=21.97 Aligned_cols=39 Identities=21% Similarity=0.538 Sum_probs=28.1
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
..|+.|-+.+... .+. . -+..||..|+ .|-.|..++...
T Consensus 6 ~~C~~C~~~I~~~-~~~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8z_A 6 SGCVQCKKPITTG-GVT--Y-REQPWHKECF--------VCTACRKQLSGQ 44 (70)
T ss_dssp CBCSSSCCBCCSS-EEE--S-SSSEEETTTS--------BCSSSCCBCTTS
T ss_pred CCCcccCCeeccc-eEE--E-CccccCCCCC--------ccCCCCCcCCcC
Confidence 4799999988743 332 2 5788998884 588898888544
No 192
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.72 E-value=45 Score=24.05 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=10.4
Q ss_pred CCCcccccccccccC
Q 016846 74 KDGLECAVCLTRFEP 88 (381)
Q Consensus 74 ~~~~~C~ICle~~~~ 88 (381)
.+-..|++|...++.
T Consensus 8 L~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 8 LEILACPACHAPLEE 22 (56)
T ss_dssp TTSCCCSSSCSCEEE
T ss_pred HhheeCCCCCCccee
Confidence 345679999887643
No 193
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.54 E-value=63 Score=22.73 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=28.7
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
..|+.|-+.+. ++.+ .. -+..||..|+ .|-.|..++....
T Consensus 6 ~~C~~C~~~I~-~~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~~~ 45 (66)
T 1nyp_A 6 PICGACRRPIE-GRVV--NA-MGKQWHVEHF--------VCAKCEKPFLGHR 45 (66)
T ss_dssp CEETTTTEECC-SCEE--CC-TTSBEETTTC--------BCTTTCCBCSSSC
T ss_pred CCCcccCCEec-ceEE--EE-CccccccCcC--------EECCCCCCCCCCc
Confidence 47999999987 4332 22 5788998883 5889988886543
No 194
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.51 E-value=1e+02 Score=21.75 Aligned_cols=39 Identities=15% Similarity=0.516 Sum_probs=28.2
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
..|+-|-+.+.. +.+.. -+..||..|+ .|-.|..++...
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLAGQ 44 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCTTS
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCCCC
Confidence 479999998864 34432 5788998884 488898888643
No 195
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=23.23 E-value=70 Score=23.17 Aligned_cols=41 Identities=17% Similarity=0.402 Sum_probs=28.8
Q ss_pred cccccccccccC---CcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 77 LECAVCLTRFEP---TEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 77 ~~C~ICle~~~~---~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
..|+-|-..+.. ...++.. =+..||..|+ .|-.|..++...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYCF--------HCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTTC--------BCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCcccC--------EehhcCCCCCCC
Confidence 479999999875 3233222 4788998883 588998888644
No 196
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.63 E-value=50 Score=27.02 Aligned_cols=38 Identities=21% Similarity=0.495 Sum_probs=28.6
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
..|+-|-+.+.....+.. -+..||..| ..|-.|...+.
T Consensus 62 ~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 479999999875533432 678899988 35889988875
No 197
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.98 E-value=90 Score=22.91 Aligned_cols=40 Identities=30% Similarity=0.704 Sum_probs=29.0
Q ss_pred cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
..|+.|-+.+. ++.+.. -+..||..|+ .|-.|..++....
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~CF--------~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDCF--------VCAVCRLPFPPGD 55 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTTS--------SCSSSCCCCCSSS
T ss_pred CcCccccCEec-cceEEE---CCceeCccCC--------ccccCCCCCCCCC
Confidence 37999999887 333332 5788998884 5889988886544
No 198
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=21.96 E-value=22 Score=36.07 Aligned_cols=50 Identities=22% Similarity=0.394 Sum_probs=33.2
Q ss_pred cccccccccCCcceeecCCCCceeChhcHHHHh-----cCCCCCCccccccCCCc
Q 016846 79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL-----DSHSTCPLCRYRVDPED 128 (381)
Q Consensus 79 C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl-----~~~~tCPlCR~~v~~~~ 128 (381)
+-||...+......+.+-.|.--||..|+.--- .....||.|+....+..
T Consensus 7 yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~~ 61 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSI 61 (447)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCCE
T ss_pred EEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCCch
Confidence 448988775444444555699999999994211 13568999987655443
No 199
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=21.86 E-value=14 Score=29.79 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=27.2
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhc----C----CCCCCcccc
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD----S----HSTCPLCRY 122 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~----~----~~tCPlCR~ 122 (381)
.|..|.........+.....|...||..|+..-.. . ...||.|+.
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 34555544444444555556999999999864321 1 235999864
No 200
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.64 E-value=52 Score=26.56 Aligned_cols=38 Identities=26% Similarity=0.613 Sum_probs=26.1
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
.|+.|-..+...+.++. .-+..||..|+ .|-.|...+.
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLECF--------KCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTTC--------BCTTTCCBCC
T ss_pred cccCCCCeecCCceEEE--ECCcccccccC--------ccccCCCCCC
Confidence 69999988876544322 24778888883 4777877774
No 201
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.55 E-value=52 Score=26.52 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=31.9
Q ss_pred cccccccccccC-CcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 77 LECAVCLTRFEP-TEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 77 ~~C~ICle~~~~-~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
+.|..|...+.+ +.... . .=+..||..|..+-+..+..|-.|..+|....
T Consensus 33 F~C~~C~~~L~~~~~~~~-~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-E-ETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCeEE-E-ECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 567777777752 11221 1 14677888888776655557889988886543
No 202
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=21.42 E-value=66 Score=25.84 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=32.6
Q ss_pred CCcccccccccccC-CcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846 75 DGLECAVCLTRFEP-TEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127 (381)
Q Consensus 75 ~~~~C~ICle~~~~-~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 127 (381)
+=+.|..|...+.. +...... =+..||..|..+-+.....|..|..+|...
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~--~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEE--TTEEECHHHHHHHHCCCEECTTTCCEECTT
T ss_pred HHcccCcCCCccccCCCeEEEE--CCEEeecCchhhhCCCccChhhcCCccCcc
Confidence 34678888877753 2222222 467788888777554444788888888653
No 203
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.37 E-value=1e+02 Score=23.15 Aligned_cols=41 Identities=20% Similarity=0.405 Sum_probs=29.8
Q ss_pred CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846 76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128 (381)
Q Consensus 76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 128 (381)
...|..|-+.+.. ..+. .-+..||..|+ .|-.|...+....
T Consensus 25 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~~~~ 65 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVK---ARDKYRHPECF--------VCADCNLNLKQKG 65 (89)
T ss_dssp CCBCTTTCCBCCS-CCEE---SSSCEECTTTC--------CCSSSCCCTTTSC
T ss_pred CCCcccCCCEecc-cEEE---ECCceECccCC--------EecCCCCCCCCCC
Confidence 3479999998875 3332 26789999883 5889988886554
No 204
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=21.10 E-value=62 Score=22.02 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=10.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHHh
Q 016846 3 VVVGVLTTMFSMTFLLLLYAKH 24 (381)
Q Consensus 3 iII~Vl~iif~l~~llliyik~ 24 (381)
+|++|+..++-.++++-++++.
T Consensus 15 II~~vmaGiIG~IllI~y~I~r 36 (40)
T 1afo_A 15 IIFGVMAGVIGTILLISYGIRR 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444444443
No 205
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=20.39 E-value=66 Score=23.33 Aligned_cols=18 Identities=11% Similarity=0.410 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 016846 4 VVGVLTTMFSMTFLLLLY 21 (381)
Q Consensus 4 II~Vl~iif~l~~llliy 21 (381)
+++++..++++++++++.
T Consensus 13 i~svl~GLLLL~Lii~~L 30 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILAL 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 206
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.19 E-value=68 Score=27.27 Aligned_cols=38 Identities=29% Similarity=0.808 Sum_probs=20.6
Q ss_pred ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846 78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125 (381)
Q Consensus 78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~ 125 (381)
.|..|.+.+...+.+... -++.||..|+ .|-.|...+.
T Consensus 67 ~C~~C~~~I~~~~~v~~a--~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 67 KCAACQLGIPPTQVVRRA--QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp BCTTTCCBCCTTSEEEEE--TTEEEEGGGC--------BCTTTCCBCC
T ss_pred cccccccccCCCcEEEEc--CCceEeeCCC--------cCCCCCCCCC
Confidence 466666655544333221 4566666663 4666766664
Done!