BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016847
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 138/270 (51%), Gaps = 11/270 (4%)
Query: 110 LFCRSWIPVSGELKGILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHG 169
LFCR W P +G K ++ + HG EHSGRY + AR L + V+A D +GHG S+G
Sbjct: 47 LFCRYWKP-TGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERM 105
Query: 170 YVPSLDHVVADTGAFLEKIKLENPTVPCFLFGHSTGGAV-VLKAASYPHIEAMLEGIVLS 228
V V D ++ ++ + P +P FL GHS GGA+ +L AA P G+VL
Sbjct: 106 VVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERP---GHFAGMVLI 162
Query: 229 APALRVEPAHPIVGAV--APLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPLVYTG 286
+P + P V A + +LV+P G V +SR+ + SDPL+
Sbjct: 163 SPLVLANPESATTFKVLAAKVLNLVLPNLSL-GPIDSSV-LSRNKTEVDIYNSDPLICRA 220
Query: 287 PIRVRTGHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKL 346
++V G ++L S ++R ++VPF +L G+ D++ D + L A S+ K +K+
Sbjct: 221 GLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKI 280
Query: 347 YEGLLHDLLFELER--DEVAQDIIVWLEKK 374
YEG H L EL + V +I +W+ ++
Sbjct: 281 YEGAYHVLHKELPEVTNSVFHEINMWVSQR 310
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 138/270 (51%), Gaps = 11/270 (4%)
Query: 110 LFCRSWIPVSGELKGILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHG 169
LFCR W P +G K ++ + HG EHSGRY + AR L + V+A D +GHG S+G
Sbjct: 48 LFCRYWKP-TGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERM 106
Query: 170 YVPSLDHVVADTGAFLEKIKLENPTVPCFLFGHSTGGAV-VLKAASYPHIEAMLEGIVLS 228
V V D ++ ++ + P +P FL GHS GGA+ +L AA P G+VL
Sbjct: 107 VVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERP---GHFAGMVLI 163
Query: 229 APALRVEPAHPIVGAV--APLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPLVYTG 286
+P + P V A + +LV+P G V +SR+ + SDPL+
Sbjct: 164 SPLVLANPESATTFKVLAAKVLNLVLPNLSL-GPIDSSV-LSRNKTEVDIYNSDPLICRA 221
Query: 287 PIRVRTGHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKL 346
++V G ++L S ++R ++VPF +L G+ D++ D + L A S+ K +K+
Sbjct: 222 GLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKI 281
Query: 347 YEGLLHDLLFELER--DEVAQDIIVWLEKK 374
YEG H L EL + V +I +W+ ++
Sbjct: 282 YEGAYHVLHKELPEVTNSVFHEINMWVSQR 311
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 137/270 (50%), Gaps = 11/270 (4%)
Query: 110 LFCRSWIPVSGELKGILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHG 169
LFCR W P +G K ++ + HG EHSGRY + AR L + V+A D +GHG S+G
Sbjct: 30 LFCRYWAP-TGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERM 88
Query: 170 YVPSLDHVVADTGAFLEKIKLENPTVPCFLFGHSTGGAV-VLKAASYPHIEAMLEGIVLS 228
V V D ++ ++ + P +P FL GHS GGA+ +L AA P G+VL
Sbjct: 89 VVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERP---GHFAGMVLI 145
Query: 229 APALRVEPAHPIVGAV--APLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPLVYTG 286
+P + P V A + + V+P G V +SR+ + SDPL+
Sbjct: 146 SPLVLANPESATTFKVLAAKVLNSVLPNLS-SGPIDSSV-LSRNKTEVDIYNSDPLICRA 203
Query: 287 PIRVRTGHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKL 346
++V G ++L S ++R ++VPF +L G+ D++ D + L A S+ K +K+
Sbjct: 204 GLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKI 263
Query: 347 YEGLLHDLLFELER--DEVAQDIIVWLEKK 374
YEG H L EL + V +I +W+ ++
Sbjct: 264 YEGAYHVLHKELPEVTNSVFHEINMWVSQR 293
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 135/270 (50%), Gaps = 11/270 (4%)
Query: 110 LFCRSWIPVSGELKGILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHG 169
LFCR W P +G K ++ + HG EHSGRY + AR L + V+A D +GHG S+G
Sbjct: 47 LFCRYWKP-TGTPKALIFVSHGAGEHSGRYEELARXLXGLDLLVFAHDHVGHGQSEGERX 105
Query: 170 YVPSLDHVVADTGAFLEKIKLENPTVPCFLFGHSTGGAV-VLKAASYPHIEAMLEGIVLS 228
V V D ++ + + P +P FL GHS GGA+ +L AA P G VL
Sbjct: 106 VVSDFHVFVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERP---GHFAGXVLI 162
Query: 229 APALRVEPAHPIVGAV--APLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPLVYTG 286
+P + P V A + +LV+P G V +SR+ + SDPL+
Sbjct: 163 SPLVLANPESATTFKVLAAKVLNLVLPNLSL-GPIDSSV-LSRNKTEVDIYNSDPLICRA 220
Query: 287 PIRVRTGHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKL 346
++V G ++L S ++R ++VPF +L G+ D++ D + L A S+ K +K+
Sbjct: 221 GLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLXELAKSQDKTLKI 280
Query: 347 YEGLLHDLLFELER--DEVAQDIIVWLEKK 374
YEG H L EL + V +I W+ ++
Sbjct: 281 YEGAYHVLHKELPEVTNSVFHEINXWVSQR 310
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 33/215 (15%)
Query: 120 GELKGILIIIHGL--NEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHGYVPSLDHV 177
GE+ + II HG N ++ + A L N D+ GHG SDG + L+ +
Sbjct: 43 GEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTVLNEI 102
Query: 178 VADTGAFLEKIKLENPTVPCFLFGHSTGGAVV-LKAASYPHIEAMLEGIVLSAPALRVEP 236
D A L +K + +L GHS GG V + A YP +++ +VL APA +
Sbjct: 103 -EDANAILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPD---LIKKVVLLAPAATL-- 156
Query: 237 AHPIVGAVAPLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPLVYTGPIRVRTGHEI 296
K N +GV + D + D + +R+ I
Sbjct: 157 -----------------KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPI 199
Query: 297 LRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQ 331
+S+ + P ++HGT D V P AS+
Sbjct: 200 YEVSAQFTK-------PVCLIHGTDDTVVSPNASK 227
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 33/215 (15%)
Query: 120 GELKGILIIIHGL--NEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHGYVPSLDHV 177
GE+ + II HG N ++ + A L N D+ GHG SDG + L+
Sbjct: 43 GEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTVLNE- 101
Query: 178 VADTGAFLEKIKLENPTVPCFLFGHSTGGAVV-LKAASYPHIEAMLEGIVLSAPALRVEP 236
+ D A L +K + +L GH+ GG V + A YP +++ +VL APA +
Sbjct: 102 IEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPD---LIKKVVLLAPAATL-- 156
Query: 237 AHPIVGAVAPLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPLVYTGPIRVRTGHEI 296
K N +GV + D + D + +R+ I
Sbjct: 157 -----------------KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPI 199
Query: 297 LRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQ 331
+S+ + P ++HGT D V P AS+
Sbjct: 200 YEVSAQFTK-------PVCLIHGTDDTVVSPNASK 227
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 33/215 (15%)
Query: 120 GELKGILIIIHGL--NEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHGYVPSLDHV 177
GE+ + II HG N ++ + A L N D+ GHG SDG + L+
Sbjct: 43 GEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTVLNE- 101
Query: 178 VADTGAFLEKIKLENPTVPCFLFGHSTGGAVV-LKAASYPHIEAMLEGIVLSAPALRVEP 236
+ D A L +K + +L GH+ GG V + A YP +++ +VL APA +
Sbjct: 102 IEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPD---LIKKVVLLAPAATL-- 156
Query: 237 AHPIVGAVAPLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPLVYTGPIRVRTGHEI 296
K N +GV + D + D + +R+ I
Sbjct: 157 -----------------KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPI 199
Query: 297 LRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQ 331
+S+ + P ++HGT D V P AS+
Sbjct: 200 YEVSAQFTK-------PVCLIHGTDDTVVSPNASK 227
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 290 VRTGHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKLYEG 349
++T + L + ++ + + P FV+ D++ +P ++ +YNE S K IK YE
Sbjct: 161 MKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIESPVKQIKWYEQ 220
Query: 350 LLHDLLFELERDEVAQDIIVWLE 372
H + + E+D++ +DI +LE
Sbjct: 221 SGHVITLDQEKDQLHEDIYAFLE 243
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 310 VSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKLYEGLLHDLLFELERDEVAQDIIV 369
+ P FV+ D++ +P ++ +YNE S K IK YE H + + E+D++ +DI
Sbjct: 180 IYAPTFVVQARHDEMINPDSANIIYNEIESPVKQIKWYEQSGHVITLDQEKDQLHEDIYA 239
Query: 370 WLE 372
+LE
Sbjct: 240 FLE 242
>pdb|1R1D|A Chain A, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
pdb|1R1D|B Chain B, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
Length = 247
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 310 VSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKLYEGLLHDLLFELERDEVAQDIIV 369
V P FV+ D+ +P ++ +YNE S K IK YE H + + E+D++ +DI
Sbjct: 181 VYAPTFVVQARHDEXINPDSANIIYNEIESPVKQIKWYEQSGHVITLDQEKDQLHEDIYA 240
Query: 370 WLE 372
+LE
Sbjct: 241 FLE 243
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 111/287 (38%), Gaps = 47/287 (16%)
Query: 110 LFCRSWIPVSGELKGILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGL-H 168
+F + W P + ++ HG S + + F V A D GHG S +
Sbjct: 16 IFYKDWGPRDAK---VIHFHHGWPLSSDDWDAQLLFFVNKGFRVVAHDRRGHGRSSQVWD 72
Query: 169 GYVPSLDHVVADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKAASYPHIEAMLEGIVL- 227
G+ +DH D A +EK+ T GHSTGG V++ + H E + VL
Sbjct: 73 GH--DMDHYADDAAAVVEKLG----THGAMHVGHSTGGGEVVRYIAR-HGERNVSKAVLI 125
Query: 228 -SAPALRVEPA--------------HPIVGAVAPLFSLVVPKYQFKGANKRGVPVSRDPA 272
S P L V+ + V A F L VP F G N+ G
Sbjct: 126 SSVPPLMVKTSSNPNGTPKSVFDDFQAHVAANRAQFYLDVPAGPFYGYNRPG-------- 177
Query: 273 ALLAKYSDPLVYT-------GPIRVRTGHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVT 325
AK S+ ++Y G + + + + + K +++P V+HG D+V
Sbjct: 178 ---AKPSEGVIYNWWRQGMMGSTKAQYDGIVAFSQTDFTNDLKGITIPVLVIHGDDDQVV 234
Query: 326 DPLASQDLYNEAASRFKDIKLYEGLLHDLLFELERDEVAQDIIVWLE 372
P A + + + + Y+G H + D+V D++ +L+
Sbjct: 235 -PYADSGVLSAKLVKNGKLITYKGAPHGIP-TTHADKVNADLLEFLQ 279
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 102/269 (37%), Gaps = 44/269 (16%)
Query: 110 LFCRSWIPVSGELKGILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHG 169
+F + W P G ++ HG + + S + V A D GHG SD
Sbjct: 11 IFYKDWGPRDGL---PVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSD---- 63
Query: 170 YVPS----LDHVVADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKAASYPHIEAMLEGI 225
PS +D AD A E + L GHSTGG V + + + + +
Sbjct: 64 -QPSTGHDMDTYAADVAALTEALDLRG----AVHIGHSTGGGEVARYVARAEPGRVAKAV 118
Query: 226 VLSA--PALRVEPAHP-------------IVGAVAPLFSLVVPKYQFKGANKRGVPVSRD 270
++SA P + +P + A F + VP F G N+ G VS+
Sbjct: 119 LVSAVPPVMVKSDTNPDGLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQ- 177
Query: 271 PAALLAKYSDPLVYTGPIRVRTGHEILRLSSYLKRNF----KSVSVPFFVLHGTGDKVTD 326
L+ D G + H ++++ + +F K + VP V HGT D+V
Sbjct: 178 --GLI----DHWWLQGMMGAANAHYEC-IAAFSETDFTDDLKRIDVPVLVAHGTDDQVV- 229
Query: 327 PLASQDLYNEAASRFKDIKLYEGLLHDLL 355
P A + +K YEGL H +L
Sbjct: 230 PYADAAPKSAELLANATLKSYEGLPHGML 258
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 121 ELKGILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHGYVPSLDHVVAD 180
E +L+ +HG S Y + T N+ V +D GHG + D++
Sbjct: 14 ETNQVLVFLHGFLSDSRTYHNHIEKFTD-NYHVITIDLPGHGEDQSSMDETWNFDYITTL 72
Query: 181 TGAFLEKIKLENPTVPCFLFGHSTGGAVVLKAASYPHI 218
L+K K ++ T LFG+S GG V L A HI
Sbjct: 73 LDRILDKYKDKSIT----LFGYSMGGRVALYYAINGHI 106
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 126 LIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHGYVPSLDHVVADTGAFL 185
+++ HG N +G + + L + V A+D +G S Y S + A+T A L
Sbjct: 49 ILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANTHALL 108
Query: 186 EKIKLENPTVPCFLFGHSTGGAVVLKAA-SYPHIEAMLEGIVLSAP 230
E++ + +V GHS GG + + A YP +E +VL P
Sbjct: 109 ERLGVARASV----IGHSXGGXLATRYALLYPR---QVERLVLVNP 147
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 125 ILIIIHGLNEHSGRYAQFARQLTSCNFGVYAM--DWIGHGGSDGL---HGYVPSLDHVVA 179
+ IIIHG HS A Q T GV + D GHG SDG H L +++A
Sbjct: 29 LCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILA 88
Query: 180 DTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKAAS 214
++ K + ++ GHS GG V+ AA+
Sbjct: 89 ----VVDYAKKLDFVTDIYMAGHSQGGLSVMLAAA 119
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 125 ILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHGYVPSLDHVVADTGAF 184
+++ IHG+ E + + A L + + V A D GHG S L V S + A
Sbjct: 28 VVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLE-MVTSYSSLTFL--AQ 84
Query: 185 LEKIKLENPTVPCFLFGHSTGGAVVLKAAS 214
++++ E P P L GHS G + AS
Sbjct: 85 IDRVIQELPDQPLLLVGHSMGAMLATAIAS 114
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 119 SGELKGILIIIHGLNEHSGRYAQFARQLTS-CNFGVYAMDWIGHGGSDGLHGYVPSLDHV 177
SG +L+++HG + +A F + S + A+D HG + + S + +
Sbjct: 34 SGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETM 93
Query: 178 VADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKAASYPHIEAML 222
D G +E + + P P L GHS GGA+ + AS + ++L
Sbjct: 94 AKDVGNVVEAMYGDLPP-PIMLIGHSMGGAIAVHTASSNLVPSLL 137
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 119 SGELKGILIIIHGLNEHSGRYAQFARQLTS-CNFGVYAMDWIGHGGSDGLHGYVPSLDHV 177
SG +L+++HG + +A F + S + A+D HG + + S + +
Sbjct: 38 SGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETM 97
Query: 178 VADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKAASYPHIEAML 222
D G +E + + P P L GH+ GGA+ + AS + ++L
Sbjct: 98 AKDVGNVVEAMYGDLPP-PIMLIGHAMGGAIAVHTASSNLVPSLL 141
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 303 LKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKLYEGLLHDLLFELERDE 362
+ K + VP V+HG D+V P+ + + + A + +K+Y G H L + +D+
Sbjct: 205 FTEDLKKIDVPTLVVHGDADQVV-PIEASGIASAALVKGSTLKIYSGAPHGLT-DTHKDQ 262
Query: 363 VAQDIIVWLE 372
+ D++ +++
Sbjct: 263 LNADLLAFIK 272
>pdb|1VSY|5 Chain 5, Proteasome Activator Complex
pdb|1VSY|8 Chain 8, Proteasome Activator Complex
pdb|3L5Q|6 Chain 6, Proteasome Activator Complex
pdb|3L5Q|8 Chain 8, Proteasome Activator Complex
Length = 997
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 288 IRVRTGHEILRLSSYLKRNFKSVSVPF-FVLHGTGDKVTDPLASQDLYNEAASRFKDIKL 346
+R R GH +L +L NF++ + F +LHG TD L + ++NE + F D+
Sbjct: 29 VRARIGHFFHKLYVFLSTNFENNTNMFQILLHGLKVWFTD-LGQETVFNEDPNAFIDVDF 87
Query: 347 YEGL 350
E +
Sbjct: 88 LENV 91
>pdb|3KS7|A Chain A, Crystal Structure Of Putative Peptide:n-Glycosidase F
(Pngase F) (Yp_210507.1) From Bacteroides Fragilis Nctc
9343 At 2.30 A Resolution
pdb|3KS7|B Chain B, Crystal Structure Of Putative Peptide:n-Glycosidase F
(Pngase F) (Yp_210507.1) From Bacteroides Fragilis Nctc
9343 At 2.30 A Resolution
pdb|3KS7|C Chain C, Crystal Structure Of Putative Peptide:n-Glycosidase F
(Pngase F) (Yp_210507.1) From Bacteroides Fragilis Nctc
9343 At 2.30 A Resolution
pdb|3KS7|D Chain D, Crystal Structure Of Putative Peptide:n-Glycosidase F
(Pngase F) (Yp_210507.1) From Bacteroides Fragilis Nctc
9343 At 2.30 A Resolution
Length = 397
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 23/144 (15%)
Query: 142 FARQLTSCNFGV------YAMDWI--GHGGSDGLHGYVPSLDHVVADTGAFLEKIKLENP 193
FAR+ S +F V + +I GHGG G +V + + D L I +
Sbjct: 240 FARRDVSTDFTVPKGAKNIRLKYIVTGHGGHSGGDEFVQKRNIISVDGKEVLNFIPWRDD 299
Query: 194 TVPCFLFGHSTGGAVVLKAASY--------PHIEAMLEGIVLS----APALRVEPAHPIV 241
F +TG ++ + ASY +E L LS P V P ++
Sbjct: 300 CASFRRFNPATGVWLIKRLASYIGEKGYTEKEVEEPLASSDLSRSNWCPGSDVVPEEAVI 359
Query: 242 GAVAP---LFSLVVPKYQFKGANK 262
G +AP F++ +P+ Q NK
Sbjct: 360 GTLAPGKHTFTVSIPEAQAVDGNK 383
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 33/226 (14%)
Query: 148 SCNFGVYAMDWIGHGGS----DGLHGYVPSLDHVVADTGAFLEKIKLENPTVPCFLFGHS 203
+ + V A D GHG S DG +DH D A + + ++ GHS
Sbjct: 47 AHGYRVVAHDRRGHGRSSQVWDGH-----DMDHYADDVAAVVAHLGIQG----AVHVGHS 97
Query: 204 TGGAVVLK-AASYPHIEAMLEGIVLSAPALRVE-PAHP-------------IVGAVAPLF 248
TGG V++ A +P + ++ + P L V+ P +P V + F
Sbjct: 98 TGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVFDGFQAQVASNRAQF 157
Query: 249 SLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRLSSYLKRNFK 308
VP F G N+ GV S ++ + + G + + + + K
Sbjct: 158 YRDVPAGPFYGYNRPGVEASE---GIIGNWWRQGM-IGSAKAHYDGIVAFSQTDFTEDLK 213
Query: 309 SVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKLYEGLLHDL 354
+ P V+HG D++ P + + + +K Y+G H +
Sbjct: 214 GIQQPVLVMHGDDDQIV-PYENSGVLSAKLLPNGALKTYKGYPHGM 258
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 24/174 (13%)
Query: 195 VPCFLFGHSTGGAVVLKA----ASYPHIEAMLEGIVLSAPALRVEPAHPIVGAV--APLF 248
+P G + GGA + +A +YP A++ + +L +P VG++ LF
Sbjct: 139 IPIAQLGCAAGGAAINRAHDFCTAYPEANALI--VACEFCSLCYQPTDLGVGSLLCNGLF 196
Query: 249 SLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILR---------L 299
+ +G GV + R+ + L+ K D ++Y ++ H +L L
Sbjct: 197 GDGIAAAVVRGRGGTGVRLERNGSYLIPKTEDWIMYD--VKATGFHFLLDKRVPATMEPL 254
Query: 300 SSYLKR-----NFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKLYE 348
+ LK + + + F+++H G ++ D L++ + A RF L E
Sbjct: 255 APALKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTE 308
>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
Length = 246
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 284 YTGPIRVRTGHEILRLSSYLK--RNFK------SVSVPFFVLHGTGDKVTDPLASQDLYN 335
YT R I+ LS+YL NFK + +P V HGT D+V + DL +
Sbjct: 148 YTAITSQRKLGGIMALSTYLPAWDNFKGKITSINKGLPILVCHGTDDQVLPEVLGHDLSD 207
Query: 336 E-AASRF-KDIKLYEGLLHDLLFELERD 361
+ S F + K Y G+ H + E +D
Sbjct: 208 KLKVSGFANEYKHYVGMQHSVCMEEIKD 235
>pdb|3E0X|A Chain A, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
pdb|3E0X|B Chain B, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
Length = 245
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 126 LIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDG-----LHGYVPSLDHVVAD 180
L+ +HG + + + + L ++ +D GHG S G ++GY+ ++ + + +
Sbjct: 19 LLFVHGSGCNLKIFGELEKYLE--DYNCILLDLKGHGESKGQCPSTVYGYIDNVANFITN 76
Query: 181 TGAFLEKIKLENPTVPCFLFGHSTGGAVVLKAA 213
+ + +N T L G+S GGA+VL A
Sbjct: 77 SEVTKHQ---KNIT----LIGYSXGGAIVLGVA 102
>pdb|3H04|A Chain A, The Crystal Structure Of The Protein With Unknown Function
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 275
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 173 SLDHVVADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKAASYPHIEAMLE 223
SLD ++ D A + I+ + P F FG S+G + L A I+ +++
Sbjct: 74 SLDCIIEDVYASFDAIQSQYSNCPIFTFGRSSGAYLSLLIARDRDIDGVID 124
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 296 ILRLSSY------LKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKLYEG 349
+L LS+Y L + + +P LHG+ D V DP + ++ ++ ++ ++
Sbjct: 145 VLALSTYAPTFDDLALDERHKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHD- 203
Query: 350 LLHDLLFELERDEVAQDIIVWLEKKL 375
+ + E+ +E+ DI WL K+L
Sbjct: 204 --YPMGHEVSLEEI-HDIGAWLRKRL 226
>pdb|2RON|A Chain A, The External Thioesterase Of The Surfactin-Synthetase
pdb|2K2Q|B Chain B, Complex Structure Of The External Thioesterase Of The
Surfactin-Synthetase With A Carrier Domain
Length = 242
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 193 PTVPCFLFGHSTGGAVVLKAASYPHIEAML-EGIVLSAPALRVEPAH 238
P P LFGHS GG + + A E + + +++SA ++P H
Sbjct: 76 PDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAVIISA----IQPPH 118
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 32/139 (23%)
Query: 95 CRWSTSLFFGVKRNALFCRSWIP--------------------VSGELKGILIIIHGLNE 134
CR S+ G K + + C+ W+P S + K I ++ G N
Sbjct: 29 CR---SVVPGNKWDCVQCQKWVPDGKIITTFTSLLSDTNGYVLRSDKQKTIYLVFRGTNS 85
Query: 135 HSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHGYVPSLDHVVADTGAFLEKIKLENPT 194
F +T F D+ G+ G++ S + VV D +++ +PT
Sbjct: 86 -------FRSAITDIVFNF--SDYKPVKGAKVHAGFLSSYEQVVNDYFPVVQEQLTAHPT 136
Query: 195 VPCFLFGHSTGGAVVLKAA 213
+ GHS GGA L A
Sbjct: 137 YKVIVTGHSLGGAQALLAG 155
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D
pdb|2IUK|B Chain B, Crystal Structure Of Soybean Lipoxygenase-D
Length = 864
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 255 YQFKGANKRGVPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRLSS--------YLKR- 305
Y + N G P DP +L S +Y P+RVRTG E R Y+ R
Sbjct: 210 YDYDVYNDLGNPDGGDPRPILGGCS---IYPYPLRVRTGRERTRTDPNSEKPGEVYVPRD 266
Query: 306 -NFKSVSVPFFVLHGTGDKVTD--PLASQDLY-----NEAASRFKDIK-LYEG 349
NF + F+ +G D PL ++ + F+D++ LYEG
Sbjct: 267 ENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEG 319
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 105 VKRNALFCRSWIPVSGELKGILIIIHGLNEHSGRYAQFA--RQLTSCNFGVYAMDWIGHG 162
V+ ALF R +P SG+ + ++++HG+ S + +L + A+D G G
Sbjct: 14 VQGQALFFREALPGSGQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLG 73
Query: 163 GS 164
S
Sbjct: 74 HS 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,274,492
Number of Sequences: 62578
Number of extensions: 473708
Number of successful extensions: 957
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 933
Number of HSP's gapped (non-prelim): 50
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)