BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016848
         (381 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZU0|A Chain A, Crystal Structure Of Sufc-Sufd Complex Involved In The
           Iron- Sulfur Cluster Biosynthesis
 pdb|2ZU0|B Chain B, Crystal Structure Of Sufc-Sufd Complex Involved In The
           Iron- Sulfur Cluster Biosynthesis
          Length = 423

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 5/74 (6%)

Query: 308 GGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC--RQLHKCIVA 365
           GG + RHN   Q  G ++   ++S  + V ++  D  +R  L+H +G+C  RQLHK IV+
Sbjct: 249 GGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCD--TRTWLEHNKGFCNSRQLHKTIVS 306

Query: 366 HSLGQAVFDGNVKV 379
              G+AVF+G + V
Sbjct: 307 DK-GRAVFNGLINV 319


>pdb|1VH4|A Chain A, Crystal Structure Of A Stabilizer Of Iron Transporter
 pdb|1VH4|B Chain B, Crystal Structure Of A Stabilizer Of Iron Transporter
          Length = 435

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 5/74 (6%)

Query: 308 GGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC--RQLHKCIVA 365
           GG + RHN   Q  G ++   ++S  + V ++  D  +R  L+H +G+C  RQLHK IV+
Sbjct: 251 GGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCD--TRTWLEHNKGFCNSRQLHKTIVS 308

Query: 366 HSLGQAVFDGNVKV 379
              G+AVF+G + V
Sbjct: 309 DK-GRAVFNGLINV 321


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,068,517
Number of Sequences: 62578
Number of extensions: 369840
Number of successful extensions: 865
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 2
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)