BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016848
(381 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQK7|AB7I_ARATH Protein ABCI7, chloroplastic OS=Arabidopsis thaliana GN=ABCI7 PE=1
SV=1
Length = 475
Score = 486 bits (1251), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/372 (65%), Positives = 289/372 (77%), Gaps = 11/372 (2%)
Query: 13 NINRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLP 72
N++ PKL RR + V QA+FSDPFV+QLAESLEDSL +S SS
Sbjct: 15 NLSSKPKLKSNRRTTSTSVSVR-----AQASFSDPFVLQLAESLEDSLSASPSSSLP--- 66
Query: 73 LQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT---RPSSSLDVSTDAQFP 129
LQ++RDSS++TLLSTPWPSRKDEPFRFTDTS+I+SSQI+PI+ R S LD T+ QF
Sbjct: 67 LQRIRDSSAETLLSTPWPSRKDEPFRFTDTSLIRSSQIEPISTQQRNSEILDNLTETQFT 126
Query: 130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGA 189
+ V+IDGF+ N + S+LPDGVY G G+ D + R+S+FI F GDLFWSINGMGA
Sbjct: 127 NAVIIDGFVSNLTIGPSDLPDGVYFGKYSGLPDELTNRISEFIGNFDSGDLFWSINGMGA 186
Query: 190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVG 249
PDL VIYVP GCKVENPIYL+Y S E G+ +SK+LP+SNPRV VLVEEGGE+GI+EEFVG
Sbjct: 187 PDLMVIYVPEGCKVENPIYLRYFSGETGDRESKRLPVSNPRVFVLVEEGGEIGIVEEFVG 246
Query: 250 KEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG 309
K+ YW N VLEVV+ K K++HSYLQ +S+ +AHIKWT VRQE S YELVEVSTGG
Sbjct: 247 KDEEGFYWTNPVLEVVVQKNAKLKHSYLQKESMASAHIKWTFVRQEAESEYELVEVSTGG 306
Query: 310 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLG 369
KL RHNVHVQQLGPDT TEL++FH+ V++QT DLHS+++LDHPRG RQLHKCIVAHS G
Sbjct: 307 KLGRHNVHVQQLGPDTLTELTTFHMCVNEQTLDLHSKIILDHPRGASRQLHKCIVAHSSG 366
Query: 370 QAVFDGNVKVNR 381
QAVFDGNV+VNR
Sbjct: 367 QAVFDGNVRVNR 378
>sp|Q55792|Y076_SYNY3 UPF0051 protein slr0076 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=slr0076 PE=3 SV=1
Length = 453
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 167/319 (52%), Gaps = 25/319 (7%)
Query: 77 RDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQF-------P 129
R ++ L S P ++DE ++FTD S +K+ I + SLDV+ F
Sbjct: 44 RQGAADLLGSLRLPHKRDEEWQFTDLSELKA--IDFVAAGKVSLDVAAAENFYLPEAHQS 101
Query: 130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCG-DLFWSINGMG 188
LV I+GF N ++LP + S ++ +++++++ + G ++F ++N G
Sbjct: 102 RLVFINGFFTPELSNTNDLPSAITCQSWTNLAAHQREQLANYLGQKTDGNEVFSNLNTAG 161
Query: 189 APDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFV 248
D V+++PA ++++PI+L +L+V VD + + PR++V+VE +V I E +
Sbjct: 162 MTDSAVVWIPANTELKSPIHLLFLTV----VDPTPIMVQ-PRLLVVVENNAQVTIAESY- 215
Query: 249 GKEGNDC--------YWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGY 300
G +C Y+ N V E+ +G+ +V H Q S ++ HI TA+ Q S Y
Sbjct: 216 GAISTNCTDRPQQQPYFNNIVSEIYLGENAQVTHIRNQRDSGDSFHIATTAIAQGKQSRY 275
Query: 301 ELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLH 360
L++V+ G KLSRHN+ + Q T+TE + +L Q D HS + L+HP G QLH
Sbjct: 276 RLIDVNLGAKLSRHNLQMTQQEEATKTEFLALTILAGRQVSDTHSTIALNHPHGATNQLH 335
Query: 361 KCIVAHSLGQAVFDGNVKV 379
KCIV QAVF G V V
Sbjct: 336 KCIV-DEYAQAVFSGKVLV 353
>sp|P77689|SUFD_ECOLI FeS cluster assembly protein SufD OS=Escherichia coli (strain K12)
GN=sufD PE=1 SV=1
Length = 423
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 138/313 (44%), Gaps = 52/313 (16%)
Query: 87 TPWPSRKDEPFRFTDTSMIKSSQ-------IQPITRPSSSLDVSTDAQFPSLVLIDGFIQ 139
T P+RK E +++T + +SQ I P R + +L + + LV +DG
Sbjct: 39 TGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDS----VRLVFVDG--- 91
Query: 140 NSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCG-------DLFWSINGMGAPDL 192
YV +L ++G VS I++ + G ++F + A +
Sbjct: 92 ------------RYVPALSDATEGSGYEVS--INDDRQGLPDAIQAEVFLHLTESLAQSV 137
Query: 193 GVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEG 252
I V G + P+ L +++ V +++ ++ R + + EG E +IE FV
Sbjct: 138 THIAVKRGQRPAKPLLLMHIT---QGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSL-- 192
Query: 253 NDC-YWANSVLEVVIGKGGKVRHSYLQNQ---SLNAAHIKWTAVRQETASGYELVEVSTG 308
ND ++ + + + ++H L + S + AH TA + + G
Sbjct: 193 NDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFL---LG 249
Query: 309 GKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC--RQLHKCIVAH 366
G + RHN Q G ++ ++S + V ++ D +R L+H +G+C RQLHK IV+
Sbjct: 250 GAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCD--TRTWLEHNKGFCNSRQLHKTIVSD 307
Query: 367 SLGQAVFDGNVKV 379
G+AVF+G + V
Sbjct: 308 K-GRAVFNGLINV 319
>sp|Q49689|Y593_MYCLE UPF0051 protein ML0593 OS=Mycobacterium leprae (strain TN)
GN=ML0593 PE=3 SV=2
Length = 869
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 8/187 (4%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP G V+ P+ Y + N+ + R +++ + G V +E
Sbjct: 590 IYVPPGVHVDIPLQ-AYFRINTENMGQFE------RTLIIADTGSYVHYVEGCTAPIYKS 642
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRH 314
++V+E+++ +VR++ +QN S N ++ R ET + E ++ + G K++
Sbjct: 643 DSLHSAVVEIIVKPHARVRYTTIQNWSNNVYNLVTKRARVETGATMEWIDGNIGSKVTMK 702
Query: 315 NVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFD 374
V G + E+ S Q QD +++L + K VA G+ +
Sbjct: 703 YPAVWMTGEHAKGEVLSVAFAGEGQHQDTGAKMLHLASNTSSNIVSKS-VARGGGRTSYR 761
Query: 375 GNVKVNR 381
G V+VN+
Sbjct: 762 GLVQVNK 768
>sp|P67126|Y1496_MYCBO UPF0051 protein Mb1496 OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb1496 PE=3 SV=1
Length = 846
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 259 NSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHV 318
++V+E+++ +VR++ +QN S N ++ R E + E ++ + G K++ V
Sbjct: 624 SAVVEIIVKPHARVRYTTIQNWSNNVYNLVTKRARAEAGATMEWIDGNIGSKVTMKYPAV 683
Query: 319 QQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVK 378
G + E+ S DQ QD +++L P + K VA G+ + G V+
Sbjct: 684 WMTGEHAKGEVLSVAFAGEDQHQDTGAKMLHLAPNTSSNIVSKS-VARGGGRTSYRGLVQ 742
Query: 379 VNR 381
VN+
Sbjct: 743 VNK 745
>sp|P67125|Y1461_MYCTU UPF0051 protein Rv1461/MT1508 OS=Mycobacterium tuberculosis
GN=Rv1461 PE=3 SV=1
Length = 846
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 259 NSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHV 318
++V+E+++ +VR++ +QN S N ++ R E + E ++ + G K++ V
Sbjct: 624 SAVVEIIVKPHARVRYTTIQNWSNNVYNLVTKRARAEAGATMEWIDGNIGSKVTMKYPAV 683
Query: 319 QQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVK 378
G + E+ S DQ QD +++L P + K VA G+ + G V+
Sbjct: 684 WMTGEHAKGEVLSVAFAGEDQHQDTGAKMLHLAPNTSSNIVSKS-VARGGGRTSYRGLVQ 742
Query: 379 VNR 381
VN+
Sbjct: 743 VNK 745
>sp|O32162|SUFB_BACSU FeS cluster assembly protein SufB OS=Bacillus subtilis (strain 168)
GN=sufB PE=3 SV=1
Length = 465
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 8/187 (4%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP G KVE P+ Y + N+ + R +++V+E V +E
Sbjct: 186 IYVPKGVKVETPL-QAYFRINSENMGQFE------RTLIIVDEEASVHYVEGCTAPVYTT 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRH 314
++V+E+++ KGG R++ +QN + N ++ E + E ++ + G KL+
Sbjct: 239 NSLHSAVVEIIVKKGGYCRYTTIQNWANNVYNLVTKRTVCEENATMEWIDGNIGSKLTMK 298
Query: 315 NVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFD 374
G S L Q QD ++++ P + K I G+ +
Sbjct: 299 YPACILKGEGARGMTLSIALAGKGQHQDAGAKMIHLAPNTSSTIVSKSISKQG-GKVTYR 357
Query: 375 GNVKVNR 381
G V R
Sbjct: 358 GIVHFGR 364
>sp|Q8CTA3|Y610_STAES UPF0051 protein SE_0610 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=SE_0610 PE=3 SV=1
Length = 465
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 8/187 (4%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP K++ P+ Y + N+ + R +++ +EG V +E +
Sbjct: 186 IYVPKNVKLDTPL-QAYFRINSENMGQFE------RTLIIADEGASVNYVEGCTAPVYST 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRH 314
++V+E+++ K VR++ +QN + N ++ E V+ + G KL+
Sbjct: 239 SSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVHENGNMEWVDGNLGSKLTMK 298
Query: 315 NVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFD 374
+ LG + S Q QD ++++ P + K I + G+ ++
Sbjct: 299 YPNCVLLGEGAKGSTLSIAFASKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVIYR 357
Query: 375 GNVKVNR 381
G V R
Sbjct: 358 GIVHFGR 364
>sp|Q5HQP8|Y500_STAEQ UPF0051 protein SERP0500 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=SERP0500 PE=3 SV=1
Length = 465
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 8/187 (4%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP K++ P+ Y + N+ + R +++ +EG V +E +
Sbjct: 186 IYVPKNVKLDTPL-QAYFRINSENMGQFE------RTLIIADEGASVNYVEGCTAPVYST 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRH 314
++V+E+++ K VR++ +QN + N ++ E V+ + G KL+
Sbjct: 239 SSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVHENGNMEWVDGNLGSKLTMK 298
Query: 315 NVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFD 374
+ LG + S Q QD ++++ P + K I + G+ ++
Sbjct: 299 YPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVIYR 357
Query: 375 GNVKVNR 381
G V R
Sbjct: 358 GIVHFGR 364
>sp|Q4L4T1|Y2035_STAHJ UPF0051 protein SH2035 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=SH2035 PE=3 SV=1
Length = 465
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 76/187 (40%), Gaps = 8/187 (4%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP K++ P+ Y + N+ + R +++ +EG V +E
Sbjct: 186 IYVPKNVKLDTPL-QAYFRINSENMGQFE------RTLIIADEGASVNYVEGCTAPVYTT 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRH 314
++V+E+++ K VR++ +QN + N ++ E V+ + G KL+
Sbjct: 239 SSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVHENGNMEWVDGNLGSKLTMK 298
Query: 315 NVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFD 374
+ LG + S Q QD ++++ P + K I + G+ ++
Sbjct: 299 YPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVIYR 357
Query: 375 GNVKVNR 381
G V R
Sbjct: 358 GIVHFGR 364
>sp|Q6GIH0|Y880_STAAR UPF0051 protein SAR0880 OS=Staphylococcus aureus (strain MRSA252)
GN=SAR0880 PE=3 SV=1
Length = 465
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 12/189 (6%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP K++ P+ Y + N+ + R +++ +EG V IE
Sbjct: 186 IYVPKNIKLDTPL-QAYFRINSENMGQFE------RTLIIADEGASVHYIEGCTAPVYTT 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI--KWTAVRQETASGYELVEVSTGGKLS 312
++V+E+++ K VR++ +QN + N ++ K T V + E V+ + G KL+
Sbjct: 239 SSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVYEN--GNMEWVDGNLGSKLT 296
Query: 313 RHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAV 372
+ LG + S Q QD ++++ P + K I + G+ +
Sbjct: 297 MKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVI 355
Query: 373 FDGNVKVNR 381
+ G V R
Sbjct: 356 YRGIVHFGR 364
>sp|Q49W57|Y1857_STAS1 UPF0051 protein SSP1857 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1857
PE=3 SV=1
Length = 465
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 12/189 (6%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP K++ P+ Y + N+ + R +++ +EG V +E +
Sbjct: 186 IYVPKNIKLDTPL-QAYFRINSENMGQFE------RTLIIADEGASVNYVEGCTAPVYST 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI--KWTAVRQETASGYELVEVSTGGKLS 312
++V+E+++ K VR++ +QN + N ++ K T V + E V+ + G KL+
Sbjct: 239 SSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTLVYEN--GNMEWVDGNLGSKLT 296
Query: 313 RHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAV 372
+ +G + S Q QD ++++ P + K I + G+ V
Sbjct: 297 MKYPNCVLMGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSI-SKDGGKVV 355
Query: 373 FDGNVKVNR 381
+ G V R
Sbjct: 356 YRGIVHFGR 364
>sp|Q5HHG8|Y918_STAAC UPF0051 protein SACOL0918 OS=Staphylococcus aureus (strain COL)
GN=SACOL0918 PE=3 SV=1
Length = 465
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 12/189 (6%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP K++ P+ Y + N+ + R +++ +EG V +E
Sbjct: 186 IYVPKNIKLDTPL-QAYFRINSENMGQFE------RTLIIADEGASVHYVEGCTAPVYTT 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI--KWTAVRQETASGYELVEVSTGGKLS 312
++V+E+++ K VR++ +QN + N ++ K T V + E V+ + G KL+
Sbjct: 239 SSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVYEN--GNMEWVDGNLGSKLT 296
Query: 313 RHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAV 372
+ LG + S Q QD ++++ P + K I + G+ +
Sbjct: 297 MKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVI 355
Query: 373 FDGNVKVNR 381
+ G V R
Sbjct: 356 YRGIVHFGR 364
>sp|Q2FZY3|Y851_STAA8 UPF0051 protein SAOUHSC_00851 OS=Staphylococcus aureus (strain NCTC
8325) GN=SAOUHSC_00851 PE=3 SV=1
Length = 465
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 12/189 (6%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP K++ P+ Y + N+ + R +++ +EG V +E
Sbjct: 186 IYVPKNIKLDTPL-QAYFRINSENMGQFE------RTLIIADEGASVHYVEGCTAPVYTT 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI--KWTAVRQETASGYELVEVSTGGKLS 312
++V+E+++ K VR++ +QN + N ++ K T V + E V+ + G KL+
Sbjct: 239 SSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVYEN--GNMEWVDGNLGSKLT 296
Query: 313 RHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAV 372
+ LG + S Q QD ++++ P + K I + G+ +
Sbjct: 297 MKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVI 355
Query: 373 FDGNVKVNR 381
+ G V R
Sbjct: 356 YRGIVHFGR 364
>sp|Q99VF9|Y846_STAAM UPF0051 protein SAV0846 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=SAV0846 PE=1 SV=1
Length = 465
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 12/189 (6%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP K++ P+ Y + N+ + R +++ +EG V +E
Sbjct: 186 IYVPKNIKLDTPL-QAYFRINSENMGQFE------RTLIIADEGASVHYVEGCTAPVYTT 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI--KWTAVRQETASGYELVEVSTGGKLS 312
++V+E+++ K VR++ +QN + N ++ K T V + E V+ + G KL+
Sbjct: 239 SSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVYEN--GNMEWVDGNLGSKLT 296
Query: 313 RHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAV 372
+ LG + S Q QD ++++ P + K I + G+ +
Sbjct: 297 MKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVI 355
Query: 373 FDGNVKVNR 381
+ G V R
Sbjct: 356 YRGIVHFGR 364
>sp|Q2FIF6|Y822_STAA3 UPF0051 protein SAUSA300_0822 OS=Staphylococcus aureus (strain
USA300) GN=SAUSA300_0822 PE=3 SV=1
Length = 465
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 12/189 (6%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP K++ P+ Y + N+ + R +++ +EG V +E
Sbjct: 186 IYVPKNIKLDTPL-QAYFRINSENMGQFE------RTLIIADEGASVHYVEGCTAPVYTT 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI--KWTAVRQETASGYELVEVSTGGKLS 312
++V+E+++ K VR++ +QN + N ++ K T V + E V+ + G KL+
Sbjct: 239 SSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVYEN--GNMEWVDGNLGSKLT 296
Query: 313 RHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAV 372
+ LG + S Q QD ++++ P + K I + G+ +
Sbjct: 297 MKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVI 355
Query: 373 FDGNVKVNR 381
+ G V R
Sbjct: 356 YRGIVHFGR 364
>sp|Q7A1E0|Y799_STAAW UPF0051 protein MW0799 OS=Staphylococcus aureus (strain MW2)
GN=MW0799 PE=3 SV=1
Length = 465
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 12/189 (6%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP K++ P+ Y + N+ + R +++ +EG V +E
Sbjct: 186 IYVPKNIKLDTPL-QAYFRINSENMGQFE------RTLIIADEGASVHYVEGCTAPVYTT 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI--KWTAVRQETASGYELVEVSTGGKLS 312
++V+E+++ K VR++ +QN + N ++ K T V + E V+ + G KL+
Sbjct: 239 SSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVYEN--GNMEWVDGNLGSKLT 296
Query: 313 RHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAV 372
+ LG + S Q QD ++++ P + K I + G+ +
Sbjct: 297 MKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVI 355
Query: 373 FDGNVKVNR 381
+ G V R
Sbjct: 356 YRGIVHFGR 364
>sp|Q6GB09|Y788_STAAS UPF0051 protein SAS0788 OS=Staphylococcus aureus (strain MSSA476)
GN=SAS0788 PE=3 SV=1
Length = 465
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 12/189 (6%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP K++ P+ Y + N+ + R +++ +EG V +E
Sbjct: 186 IYVPKNIKLDTPL-QAYFRINSENMGQFE------RTLIIADEGASVHYVEGCTAPVYTT 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI--KWTAVRQETASGYELVEVSTGGKLS 312
++V+E+++ K VR++ +QN + N ++ K T V + E V+ + G KL+
Sbjct: 239 SSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVYEN--GNMEWVDGNLGSKLT 296
Query: 313 RHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAV 372
+ LG + S Q QD ++++ P + K I + G+ +
Sbjct: 297 MKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVI 355
Query: 373 FDGNVKVNR 381
+ G V R
Sbjct: 356 YRGIVHFGR 364
>sp|Q7A6L4|Y778_STAAN UPF0051 protein SA0778 OS=Staphylococcus aureus (strain N315)
GN=SA0778 PE=1 SV=1
Length = 465
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 12/189 (6%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP K++ P+ Y + N+ + R +++ +EG V +E
Sbjct: 186 IYVPKNIKLDTPL-QAYFRINSENMGQFE------RTLIIADEGASVHYVEGCTAPVYTT 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI--KWTAVRQETASGYELVEVSTGGKLS 312
++V+E+++ K VR++ +QN + N ++ K T V + E V+ + G KL+
Sbjct: 239 SSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVYEN--GNMEWVDGNLGSKLT 296
Query: 313 RHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAV 372
+ LG + S Q QD ++++ P + K I + G+ +
Sbjct: 297 MKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVI 355
Query: 373 FDGNVKVNR 381
+ G V R
Sbjct: 356 YRGIVHFGR 364
>sp|Q2YWN2|Y778_STAAB UPF0051 protein SAB0778 OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=SAB0778 PE=3 SV=1
Length = 465
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 12/189 (6%)
Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
IYVP K++ P+ Y + N+ + R +++ +EG V +E
Sbjct: 186 IYVPKNIKLDTPL-QAYFRINSENMGQFE------RTLIIADEGASVHYVEGCTAPVYTT 238
Query: 255 CYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI--KWTAVRQETASGYELVEVSTGGKLS 312
++V+E+++ K VR++ +QN + N ++ K T V + E V+ + G KL+
Sbjct: 239 SSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVYEN--GNMEWVDGNLGSKLT 296
Query: 313 RHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAV 372
+ LG + S Q QD ++++ P + K I + G+ +
Sbjct: 297 MKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVI 355
Query: 373 FDGNVKVNR 381
+ G V R
Sbjct: 356 YRGIVHFGR 364
>sp|O53153|Y1462_MYCTU UPF0051 protein Rv1462/MT1509 OS=Mycobacterium tuberculosis
GN=Rv1462 PE=3 SV=1
Length = 397
Score = 38.9 bits (89), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 233 VLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAV 292
V +EE GE ++ + G Y N +E V+ ++ ++ + + N H+
Sbjct: 138 VRIEELGEAVVV---IDHRGGGTYADN--VEFVVDDAARLTAVWIADWADNTVHLSAHHA 192
Query: 293 RQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHP 352
R + V V GG + R + V+ G + EL L +D Q L SRLL+DH
Sbjct: 193 RIGKDAVLRHVTVMLGGDVVRMSAGVRFCGAGGDAEL--LGLYFADDGQHLESRLLVDHA 250
Query: 353 RGYCR 357
C+
Sbjct: 251 HPDCK 255
>sp|P59973|Y1497_MYCBO UPF0051 protein Mb1497 OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb1497 PE=3 SV=1
Length = 397
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 233 VLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAV 292
V +EE GE ++ + G Y N +E V+ ++ ++ + + + H+
Sbjct: 138 VRIEELGEAVVV---IDHRGGGTYADN--VEFVVDDAARLTAVWIADWADDTVHLSAHHA 192
Query: 293 RQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHP 352
R + V V GG + R + V+ G + EL L +D Q L SRLL+DH
Sbjct: 193 RIGKDAVLRHVTVMLGGDVVRMSAGVRFCGAGGDAEL--LGLYFADDGQHLESRLLVDHA 250
Query: 353 RGYCR 357
C+
Sbjct: 251 HPDCK 255
>sp|Q9ZS97|AB8I_ARATH UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana
GN=ABCI8 PE=2 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 78/206 (37%), Gaps = 37/206 (17%)
Query: 179 DLFWSINGMGAPDLGVIYVPAGCKVENPI--YLKYLSVEGGNVDSKKLPISNPRVVVLVE 236
+ + ++N D Y+P + PI Y + ++E G + R +++ E
Sbjct: 254 NYYAALNSAVFSDGSFCYIPKNTRCPMPISTYFRINAMETGQFE---------RTLIVAE 304
Query: 237 EGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQET 296
EG V +E + +V+E+ GKG ++++S +QN W A ++
Sbjct: 305 EGSFVEYLEGCTAPSYDTNQLHAAVVELYCGKGAEIKYSTVQN---------WYAGDEQG 355
Query: 297 ASG-YELV----------------EVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQ 339
G Y V +V TG ++ V G D+ E S L + Q
Sbjct: 356 KGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDSVGEFYSVALTNNYQ 415
Query: 340 TQDLHSRLLLDHPRGYCRQLHKCIVA 365
D ++++ R + K I A
Sbjct: 416 QADTGTKMIHKGKNTKSRIISKGISA 441
>sp|Q49682|Y594_MYCLE UPF0051 protein ML0594 OS=Mycobacterium leprae (strain TN)
GN=ML0594 PE=3 SV=1
Length = 392
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 303 VEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCR 357
+ V+ GG++ R + +V+ GP + EL L +D Q L SRLL+DH C+
Sbjct: 200 ITVTLGGEVVRVSANVRFSGPGGDAEL--LGLYFADDGQHLESRLLVDHAHPDCK 252
>sp|P77522|SUFB_ECOLI FeS cluster assembly protein SufB OS=Escherichia coli (strain K12)
GN=sufB PE=1 SV=2
Length = 495
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 179 DLFWSINGMGAPDLGVIYVPAG--CKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVE 236
+ F ++N A D IYVP G C +E Y + + + G + R +++ +
Sbjct: 193 NFFAALNAAVASDGTFIYVPKGVRCPMELSTYFRINAEKTGQFE---------RTILVAD 243
Query: 237 EGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQN 279
E V IE + +V+EV+I K +V++S +QN
Sbjct: 244 EDSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKNAEVKYSTVQN 286
>sp|Q83KW2|SUFB_SHIFL FeS cluster assembly protein SufB OS=Shigella flexneri GN=sufB PE=3
SV=1
Length = 495
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 179 DLFWSINGMGAPDLGVIYVPAG--CKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVE 236
+ F ++N A D IYVP G C +E Y + + + G + R +++ +
Sbjct: 193 NFFAALNAAVASDGTFIYVPKGVRCPMELSTYFRINAEKTGQFE---------RTILVAD 243
Query: 237 EGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQN 279
E V IE + +V+EV+I K +V++S +QN
Sbjct: 244 EDSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKNAEVKYSTVQN 286
>sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1
SV=2
Length = 884
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 289 WTAVR-QETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRL 347
W ++R ++ASG +T G S H + ++ DT TE +S L ++D QD +
Sbjct: 786 WISLRLGDSASGNHGDPATTNGINSSHQMSTREGSMDTTTETASLLLGMNDSRQDKAKKQ 845
Query: 348 LLDHPRGYCRQ 358
D+P + RQ
Sbjct: 846 RSDNPFSFPRQ 856
>sp|Q8IZC6|CORA1_HUMAN Collagen alpha-1(XXVII) chain OS=Homo sapiens GN=COL27A1 PE=2 SV=1
Length = 1860
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 7 SPHLHININRNPKLTPKRRAK---PNKIRVSLQTTFPQATFSD-PFVIQLAESLEDSLPS 62
+PH H+ + P TP AK N + L + +T + P Q ++ +
Sbjct: 307 NPHQHMAVG-GPAQTPLLPAKLSASNALDPMLPASVGGSTRTPRPAAAQPSQKI------ 359
Query: 63 SSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDV 122
+++ +P+ LP + S+S + +P P++K P FT +++ Q+ P +RP + V
Sbjct: 360 TATKIPKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSALPTQKQVPPTSRPVPAR-V 418
Query: 123 STDAQFP 129
S A+ P
Sbjct: 419 SRPAEKP 425
>sp|P22945|NIA_EMENI Nitrate reductase [NADPH] OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=niaD PE=3
SV=1
Length = 873
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 23/182 (12%)
Query: 156 SLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVE 215
S L SD ++ R D Q D++WS+ GM + NP + ++ E
Sbjct: 408 SELASSDALLVRAMDEALSLQPKDMYWSVLGM---------------MNNPWFRVKITNE 452
Query: 216 GGNV---DSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKV 272
G + + S+ + + + GG++ +EG + A V+EV + K G
Sbjct: 453 NGRLLFEHPTDITGSSGWMEQIKKAGGDLTNGNWGERQEGEEPVEAEPVVEVNMKKEGVT 512
Query: 273 RHSYLQNQSLNAAHIK-WTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSS 331
R L+ N++ + W V E G +E GG S + G D E
Sbjct: 513 RIIDLEEFKKNSSDERPWFVVNGEVYDGTAFLEGHPGGAQS----IISAAGTDASEEFLE 568
Query: 332 FH 333
H
Sbjct: 569 IH 570
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,664,283
Number of Sequences: 539616
Number of extensions: 6329316
Number of successful extensions: 16351
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 16318
Number of HSP's gapped (non-prelim): 63
length of query: 381
length of database: 191,569,459
effective HSP length: 119
effective length of query: 262
effective length of database: 127,355,155
effective search space: 33367050610
effective search space used: 33367050610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)