Query 016848
Match_columns 381
No_of_seqs 226 out of 1462
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:21:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01980 sufB FeS assembly pr 100.0 9.1E-56 2E-60 447.1 38.6 302 69-381 35-356 (448)
2 PRK11814 cysteine desulfurase 100.0 2.7E-54 5.9E-59 439.2 38.8 302 69-381 50-385 (486)
3 PRK10948 cysteine desulfurase 100.0 5.3E-54 1.2E-58 430.4 37.2 290 75-381 28-322 (424)
4 CHL00085 ycf24 putative ABC tr 100.0 2E-53 4.3E-58 433.2 37.5 302 69-381 51-384 (485)
5 TIGR01981 sufD FeS assembly pr 100.0 7.7E-49 1.7E-53 388.7 35.1 273 89-381 1-277 (366)
6 COG0719 SufB Cysteine desulfur 100.0 6E-43 1.3E-47 350.8 32.0 301 69-381 11-314 (412)
7 PF01458 UPF0051: Uncharacteri 100.0 3.3E-27 7.1E-32 220.0 25.5 155 225-381 3-157 (229)
8 PF01458 UPF0051: Uncharacteri 98.7 2.4E-05 5.2E-10 72.9 27.1 175 192-379 8-187 (229)
9 PRK10948 cysteine desulfurase 98.2 0.0012 2.6E-08 67.1 25.5 171 190-372 171-345 (424)
10 TIGR01981 sufD FeS assembly pr 98.1 0.001 2.2E-08 66.4 22.9 171 190-371 124-299 (366)
11 TIGR01980 sufB FeS assembly pr 98.0 0.0022 4.8E-08 65.7 24.7 171 191-372 205-379 (448)
12 COG0719 SufB Cysteine desulfur 97.7 0.0058 1.3E-07 62.0 20.9 168 192-371 165-336 (412)
13 CHL00085 ycf24 putative ABC tr 97.6 0.019 4.2E-07 59.4 23.0 141 227-371 192-345 (485)
14 PRK11814 cysteine desulfurase 97.5 0.026 5.7E-07 58.4 22.7 141 227-371 193-346 (486)
15 PF01774 UreD: UreD urease acc 87.9 9 0.0002 35.1 11.6 84 228-311 16-102 (209)
16 COG0829 UreH Urease accessory 86.6 8.6 0.00019 36.8 10.9 117 189-311 28-146 (269)
17 COG0829 UreH Urease accessory 57.6 92 0.002 29.9 9.6 69 260-330 62-138 (269)
18 PF01774 UreD: UreD urease acc 43.3 2.6E+02 0.0056 25.4 13.8 91 260-351 17-123 (209)
19 PF06069 PerC: PerC transcript 40.9 29 0.00064 27.5 2.9 31 70-100 57-88 (90)
No 1
>TIGR01980 sufB FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=100.00 E-value=9.1e-56 Score=447.13 Aligned_cols=302 Identities=18% Similarity=0.195 Sum_probs=265.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCC--CCCCCCCCCCCccccccCCCCCCC----CCC------CCCCC-----CCCCcceE
Q 016848 69 QPLPLQKLRDSSSQTLLSTPWPS--RKDEPFRFTDTSMIKSSQIQPITR----PSS------SLDVS-----TDAQFPSL 131 (381)
Q Consensus 69 ~p~~l~~~R~~a~~~~~~l~~Pt--~k~E~WryT~l~~l~~~~~~~~~~----~~~------~~~~~-----~~~~~~~l 131 (381)
+|.||.++|++|++.|.++|||+ +|+|+|||||++.+...++..... +.. ..+++ ..+.. ++
T Consensus 35 ep~wl~~~R~~A~~~~~~l~~P~~~~~~e~w~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 113 (448)
T TIGR01980 35 EPDWMLDFRLRALELFEKMPMPTWGPDLSGIDYEDIVYYSKPDKKKATSWDEVPDEIKDTFEKLGIPEAERKALAGV-GA 113 (448)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCCCCCCCCcCccccEEeecccccccCChhhCCHHHHHHHHHcCCChHHhhhcCce-EE
Confidence 79999999999999999999999 999999999998776543311111 111 01122 12333 59
Q ss_pred EEECCEEcccccCCCCCCCCeEEEeccCCc---hhHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEeeeeEE
Q 016848 132 VLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIY 208 (381)
Q Consensus 132 vfvnG~~~~~~s~~~~lp~GV~v~~l~~a~---~~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~~PI~ 208 (381)
+|+||.+...+++.. .++||+++++.++. ++++++|++.... ..+|+|++||+|++++|+|||||+|+++++||+
T Consensus 114 ~~~~~~~~~~ls~~l-~~~GV~~~~l~~a~~~~~~~v~~~l~~~~~-~~~~~f~aLn~A~~~~G~~i~Vp~g~~~~~Pi~ 191 (448)
T TIGR01980 114 QYDSEVIYHNIKEDL-EEKGVIFCDMDTALKEYPDLVKEYFMSVVP-PSDNKFAALNGAVWSGGSFVYVPKGVRVDMPLQ 191 (448)
T ss_pred EEcCEEEEEcchhHH-hcCCEEEecHHHHHHhCHHHHHHHHhccCC-CcccHHHhHhhcccCceEEEEECCCCEeCCCEE
Confidence 999999999887753 38899999999876 5779999987443 347899999999999999999999999999999
Q ss_pred EEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecCCCceEEE
Q 016848 209 LKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIK 288 (381)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~ 288 (381)
++|+.++.+ ..+++|++|++|+||+++|||+|.+......+++|+++||++++||+|+|+++|+|+.+++|+.
T Consensus 192 ~~~~~~~~~-------~~~~~r~lIi~ee~s~~~iie~~~s~~~~~~~~~~~v~Ei~v~~~A~v~~~~iq~~~~~~~~~~ 264 (448)
T TIGR01980 192 TYFRINSEN-------TGQFEHTLIIADEGASVHYIEGCSAPIYSTNSLHAAVVELIVKEDARVRYSTVQNWSKNVYNLV 264 (448)
T ss_pred EEEEEcCCc-------cceeeeEEEEECCCCEEEEEEeccccCCCccceEEEEEEEEEcCCCEEEEEEEeecCCCeEEEE
Confidence 999876543 3678999999999999999999998632457899999999999999999999999999999999
Q ss_pred EEEEEEcCCcEEEEEEEEeCCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCC
Q 016848 289 WTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSL 368 (381)
Q Consensus 289 ~~~v~~~~~a~~~~~~~~~Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~ 368 (381)
++++.++++|+|+|+.+.+|++++|+++.+.|.|++|+++++|++++.++|++|+++.++|.+|+|+|++++|||+. |+
T Consensus 265 ~~~~~~~~~a~~~~~~~~lG~~~s~~~~~~~L~G~~a~~~~~~~~l~~~~q~~D~~t~v~h~~p~t~s~~~~k~v~~-d~ 343 (448)
T TIGR01980 265 TKRALVEENGTMEWVSGSIGSKITMKYPSSILKGEGAKTEFLSIAFAGKGQHLDTGAKMIHLAPNTSSTIISKSISK-GG 343 (448)
T ss_pred EEEEEEcCCCEEEEEEEEecCceEEEeceEEEEcCCcEEEEEEEEecCCCEEEEcceEEEEeCCCcEEEEEEEEEEC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eEEEEEeEEEecC
Q 016848 369 GQAVFDGNVKVNR 381 (381)
Q Consensus 369 s~~VF~G~I~V~~ 381 (381)
|++||+|+|+|.+
T Consensus 344 s~~vf~G~i~v~~ 356 (448)
T TIGR01980 344 GKSTYRGLVKIGP 356 (448)
T ss_pred cEEEEEEEEEECC
Confidence 9999999999975
No 2
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=100.00 E-value=2.7e-54 Score=439.25 Aligned_cols=302 Identities=16% Similarity=0.162 Sum_probs=262.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCC---CCCCCCCCCCCccccccCC---CC-C-CCCCC------CCCCC--CC-------
Q 016848 69 QPLPLQKLRDSSSQTLLSTPWPS---RKDEPFRFTDTSMIKSSQI---QP-I-TRPSS------SLDVS--TD------- 125 (381)
Q Consensus 69 ~p~~l~~~R~~a~~~~~~l~~Pt---~k~E~WryT~l~~l~~~~~---~~-~-~~~~~------~~~~~--~~------- 125 (381)
+|.||.++|++|++.|.++|||+ +|.|+|||||++.+...++ .+ . ..+.. ..+++ +.
T Consensus 50 ep~Wl~~~R~~A~~~~~~l~~P~~~~~~~e~w~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 129 (486)
T PRK11814 50 EPEWMLEWRLKAYRHWLTMEEPHWAKVHYPPIDYQDISYYSAPKCKSKPKSLDEVDPELLETFEKLGIPLREQKRLAGRE 129 (486)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcccceeeeccccccccCCcccCCHHHHHHHHhcCCCHHHHhhhhccc
Confidence 79999999999999999999999 8999999999987765433 11 0 01111 01122 11
Q ss_pred CCcceEEEECCEEcccccCCCCCCCCeEEEeccCCc---hhHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcE
Q 016848 126 AQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCK 202 (381)
Q Consensus 126 ~~~~~lvfvnG~~~~~~s~~~~lp~GV~v~~l~~a~---~~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~ 202 (381)
... +++|.+|.+...+++.. .++||+++++.+|. ++++++|+++... ..+++|++||.|++++|+|||||+|++
T Consensus 130 ~~~-~~v~~~~~~~~~ls~~l-~~~GV~~~~l~~a~~~~~~lv~~~l~~~~~-~~~~~f~aLn~A~~~~G~fi~Vp~gv~ 206 (486)
T PRK11814 130 VAV-DAVFDSVSVATTFKEKL-AEAGVIFCSISEAIQEHPELVKKYLGSVVP-VNDNFFAALNSAVFSDGSFVYIPKGVR 206 (486)
T ss_pred cce-EEEEcCeEEEeccCchh-hcCCeEEEcHHHHhhhhHHHHHHHhccCCC-CCchHHHHHHHhhcCCeEEEEECCCCc
Confidence 233 48999999998887754 38899999999876 5779999988443 347899999999999999999999999
Q ss_pred eeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEec--
Q 016848 203 VENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQ-- 280 (381)
Q Consensus 203 ~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~-- 280 (381)
++.||++++..+... ..+++|++|++|+||+++|||+|.++.....+++|+++||++++||+|+|+++|+|
T Consensus 207 ~~~pi~~~~~~~~~~-------~~~~~r~lIi~ee~S~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~~~iq~~~~ 279 (486)
T PRK11814 207 CPMELSTYFRINAAN-------TGQFERTLIIADEGSYVSYLEGCTAPMRDENQLHAAVVELVALDDAEIKYSTVQNWYP 279 (486)
T ss_pred eeEEEEEEEeecCCC-------cceeeEEEEEECCCCEEEEEEEecCCCCCccceeeEEEEEEECCCCEEEEEEEEeecC
Confidence 999999988765432 36899999999999999999999986224568999999999999999999999999
Q ss_pred -----CCCceEEEEEEEE-EcCCcEEEEEEEEeCCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCc
Q 016848 281 -----SLNAAHIKWTAVR-QETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRG 354 (381)
Q Consensus 281 -----~~~~~~~~~~~v~-~~~~a~~~~~~~~~Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t 354 (381)
+.+++|+...++. ++++|+++|..+.+|++++|+++.+.|.|+||+++++|++++.++|++|+++.|.|.+|+|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~lG~~~~r~~~~~~L~G~ga~~~~~gi~l~~~~q~~D~~t~v~H~~p~t 359 (486)
T PRK11814 280 GDENGKGGIYNFVTKRGLCRGENSKISWTQVETGSAITWKYPSCILRGDNSVGEFYSVALTNGHQQADTGTKMIHIGKNT 359 (486)
T ss_pred ccccCCCceEEEeeeEEEEecCCcEEEEEEEEcCCceEEeecceEEecCCcEEEEEeEEeccCCEEEEeeEEEEEcCCCc
Confidence 7888999999988 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEeCCCeEEEEEeEEEecC
Q 016848 355 YCRQLHKCIVAHSLGQAVFDGNVKVNR 381 (381)
Q Consensus 355 ~S~ql~KgVl~~d~s~~VF~G~I~V~~ 381 (381)
+|++++|||+. |+|++||+|+|+|.+
T Consensus 360 ~S~~~~k~V~~-d~s~~vF~G~i~V~~ 385 (486)
T PRK11814 360 KSTIISKGISA-GHSQNTYRGLVKIMP 385 (486)
T ss_pred EEEEEEEEEEc-CCcEEEEEEEEEECC
Confidence 99999999999 999999999999975
No 3
>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional
Probab=100.00 E-value=5.3e-54 Score=430.45 Aligned_cols=290 Identities=22% Similarity=0.250 Sum_probs=246.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccccccCCCCCCCCC-C---CCCCC-CCCCcceEEEECCEEcccccCCCCCC
Q 016848 75 KLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPS-S---SLDVS-TDAQFPSLVLIDGFIQNSALNLSNLP 149 (381)
Q Consensus 75 ~~R~~a~~~~~~l~~Pt~k~E~WryT~l~~l~~~~~~~~~~~~-~---~~~~~-~~~~~~~lvfvnG~~~~~~s~~~~lp 149 (381)
++|++||+.|.++|||++|+|+||||||+.+....|.+...+. . ...++ ..+.+ ++||+||.+.+.+|+.. +|
T Consensus 28 ~~r~~a~~~~~~~glPt~k~E~WkyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lvfvnG~~~~~ls~~~-~~ 105 (424)
T PRK10948 28 PQARQHWQQVLRLGLPTRKHEDWKYTPLEGLLNSQFVFSIAAEISPAQRDALALTIDAV-RLVFVDGRFSPALSDST-EG 105 (424)
T ss_pred HHHHHHHHHHHhCCCCCCCCcCcCCCCHHHHhccccccccccccChhhhhhccccCCce-EEEEECCEEchhhCccc-CC
Confidence 8999999999999999999999999999998876553111111 1 01122 23445 59999999999999843 33
Q ss_pred CCeEEEeccCCchhHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceec
Q 016848 150 DGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNP 229 (381)
Q Consensus 150 ~GV~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~ 229 (381)
+ |.++++. +... +... ...|+|++||+|++++|++||||+|+.+++||+|+|+.++.++ ......++
T Consensus 106 ~-v~v~~~~-a~~~-----~~~~---~~~d~f~aLN~A~~~~g~~i~v~~~~~~~~Pi~i~~~~~~~~~---~~~~~~~~ 172 (424)
T PRK10948 106 P-YQVSIND-DRQG-----LPAA---IQPEVFLHLTESLAQSVTHIRLPRGQRPAKPLYLLHITQGVAG---EELNTAHY 172 (424)
T ss_pred C-eEEEEch-hhhh-----cccc---ccccHHHHHHHhhCcCCEEEEECCCCccccCEEEEEEecCCCc---cccccccc
Confidence 4 7777755 3222 1111 1357999999999999999999999999999999998765311 00125789
Q ss_pred eEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEEEeCC
Q 016848 230 RVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG 309 (381)
Q Consensus 230 r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~~~Gg 309 (381)
|++|++|+||+++|||+|.+.+ ...+|+|.++||++++||+|+|+++|.++.+++|+.+.++.++++|+|+|+.+.+||
T Consensus 173 r~lI~~e~~a~~tiie~~~s~~-~~~~~~n~v~ei~~~~~A~l~~~~lq~~~~~~~~~~~~~~~~~~~s~~~~~~~~~G~ 251 (424)
T PRK10948 173 RHHLDLAEGAEATVIEHFVSLN-EARHFTGARLTMNVADNAHLNHIKLAFENPSSYHFAHNDLLLGRDARAFSHSFLLGA 251 (424)
T ss_pred eEEEEECCCCEEEEEEEeecCC-CCceeEeeeEEEEECCCCEEEEEEEEccCCCcEEEEEeEEEEcCCCEEEEEEEEeCC
Confidence 9999999999999999999864 346899999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEEEEEeEEEecC
Q 016848 310 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381 (381)
Q Consensus 310 ~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~VF~G~I~V~~ 381 (381)
+++|+++.+.|.|++|+++++|++++.++||+|+++.|.|.+|+|+|+|++|||++ |+|++||+|+|+|+|
T Consensus 252 ~~~r~~~~~~L~G~~a~~~~~g~~l~~~~q~~D~~~~i~H~~p~t~S~~~~kgvl~-d~s~~vF~G~i~V~~ 322 (424)
T PRK10948 252 AVLRHNTSTQLNGENSTLRLNSLAMPVKNEVCDTRTWLEHNKGYCNSRQLHKTIVS-DKGRAVFNGLIKVAQ 322 (424)
T ss_pred ceEEEeeeEEEECCCcEEEEEEEEEcCCCEEEEccEEEEEcCCCcEEEEEEEEEEc-CCCEEEEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999 999999999999975
No 4
>CHL00085 ycf24 putative ABC transporter
Probab=100.00 E-value=2e-53 Score=433.21 Aligned_cols=302 Identities=16% Similarity=0.142 Sum_probs=256.6
Q ss_pred CChHHHHHHHHHHHHhhcCCCCC---CCCCCCCCCCCcc----ccccCCCCC-CCCCC------CCCCCC-------CCC
Q 016848 69 QPLPLQKLRDSSSQTLLSTPWPS---RKDEPFRFTDTSM----IKSSQIQPI-TRPSS------SLDVST-------DAQ 127 (381)
Q Consensus 69 ~p~~l~~~R~~a~~~~~~l~~Pt---~k~E~WryT~l~~----l~~~~~~~~-~~~~~------~~~~~~-------~~~ 127 (381)
+|.||.++|++|++.|.++|||+ +|.|+|||||++. +........ ..+.. ...++. ..+
T Consensus 51 ep~Wl~~~R~~A~~~~~~~~~P~~~~~~~e~w~~t~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 130 (485)
T CHL00085 51 EPIFLLIFRLKAYKKWKKMKEPDWAFLKYPEIDYQDISYYSAPKLKKKLNSLDEVDPELLDTFEKLGISLNEQKRLANVA 130 (485)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCchhceeeeccccccccCChhhCCHHHHHHHHhcCCCHHHHhhhcCCc
Confidence 79999999999999999999999 8999999999984 221110000 00100 011111 123
Q ss_pred cceEEEECCEEcccccCCCCCCCCeEEEeccCCc---hhHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEee
Q 016848 128 FPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVE 204 (381)
Q Consensus 128 ~~~lvfvnG~~~~~~s~~~~lp~GV~v~~l~~a~---~~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~ 204 (381)
. +++|++|.+...+++.. .++||+++++.+|. ++++++|++.... ..+++|++||.|++++|+|||||+|++++
T Consensus 131 ~-~~v~~~~~~~~~l~~~l-~~~Gv~~~~l~~a~~~~~~lv~~yl~~~~~-~~~~~f~aLn~A~~~~G~fi~Vp~gv~~~ 207 (485)
T CHL00085 131 V-DAVFDSVSIGTTFKEEL-AKAGVIFCSISEAIQKYPELIKKYLGSVVP-IGDNYFAALNSAVFSDGSFCYIPKDTKCP 207 (485)
T ss_pred e-EEEEccEEEEeeccchh-hcCCeEEEcHHHHHhhhHHHHHHHhcccCC-CCchHHHHHHHHHcCCeEEEEECCCCcce
Confidence 3 48899999998887643 38899999999887 5678999987543 34889999999999999999999999999
Q ss_pred eeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecC---
Q 016848 205 NPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQS--- 281 (381)
Q Consensus 205 ~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~--- 281 (381)
.||++++..++.+ ..+++|++|++|+||+++|||+|.++.+...+++|+++||++++||+|+|++||+|+
T Consensus 208 ~pl~~~~~~~~~~-------~~~~~r~lIi~eega~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~~~iq~~~~~~ 280 (485)
T CHL00085 208 LELSTYFRINNEE-------SGQFERTLIIAEENSYVSYLEGCTAPQYDTNQLHAAVVELIALENAEIKYSTVQNWYAGD 280 (485)
T ss_pred EEEEEEEeecCCc-------cceeeeEEEEECCCCEEEEEEEeccCCCCccceEEEEEEEEECCCCEEEEEEEEeecCcc
Confidence 9999988765422 368999999999999999999999863345789999999999999999999999996
Q ss_pred ----CCceEEEEEEEEE-cCCcEEEEEEEEeCCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEE
Q 016848 282 ----LNAAHIKWTAVRQ-ETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC 356 (381)
Q Consensus 282 ----~~~~~~~~~~v~~-~~~a~~~~~~~~~Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S 356 (381)
.+.+|+...++.+ +++|+++|..+.+||+++|+++.+.|.|+||+++++|++++.++|++|+++.|+|.+|+|+|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~r~~~~~~L~G~~a~~~~~~i~l~~~~Q~~D~~t~v~h~~p~t~S 360 (485)
T CHL00085 281 ENGEGGIYNFVTKRGLCAGKNSKISWTQVETGSAITWKYPSCILIGDNSQGEFYSVALTNNYQQADTGTKMIHIGKNTKS 360 (485)
T ss_pred ccccCceeeeeeeEEEEEcCCcEEEEEEEEecCceEEeeceEEEecCCcEEEEEEEEEccCCEEEEeeEEEEEcCCCcEE
Confidence 5677877777766 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeCCCeEEEEEeEEEecC
Q 016848 357 RQLHKCIVAHSLGQAVFDGNVKVNR 381 (381)
Q Consensus 357 ~ql~KgVl~~d~s~~VF~G~I~V~~ 381 (381)
++++|||+. |+|++||+|+|+|.+
T Consensus 361 ~~~~k~Il~-d~s~~vF~G~i~V~~ 384 (485)
T CHL00085 361 RIISKGISA-GKSKNSYRGLVKIGP 384 (485)
T ss_pred EEEEEEEEC-CCCEEEEEEEEEECC
Confidence 999999999 999999999999975
No 5
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=100.00 E-value=7.7e-49 Score=388.67 Aligned_cols=273 Identities=26% Similarity=0.402 Sum_probs=235.0
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCC-CCCC--CCCCCCCCCcceEEEECCEEcccccCCCCCCCCeEEEeccCCchhHH
Q 016848 89 WPSRKDEPFRFTDTSMIKSSQIQPIT-RPSS--SLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIM 165 (381)
Q Consensus 89 ~Pt~k~E~WryT~l~~l~~~~~~~~~-~~~~--~~~~~~~~~~~~lvfvnG~~~~~~s~~~~lp~GV~v~~l~~a~~~~~ 165 (381)
||++|+|+||||||+.+....+.+.. .+.. ....+..+.. ++||+||.+.+.+++...+++|+.+..+.+..
T Consensus 1 ~P~~~~e~wkyt~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~lv~~~G~~~~~l~~~~~~~~~~~~~~l~~~~---- 75 (366)
T TIGR01981 1 LPPRRIEEWRYTDLENLLNESFQPRAAVPQEVQAAGLPLTKSP-RLVFVDGVIVPDLSDALPLHPELLEDLLDALA---- 75 (366)
T ss_pred CCCCcccCccCCCHHHhhhcccCcccCCCccccccccccCCce-eEEEECCEEecChhhhhccCcceEEeehhccc----
Confidence 69999999999999998876664211 1111 1112222344 59999999999988766677788777665421
Q ss_pred HHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEE
Q 016848 166 KRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIE 245 (381)
Q Consensus 166 ~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE 245 (381)
.. ..+++|++||.|++++|++|+||+|+++++||+++|+.++.++ ...++|++|++|+||+++|||
T Consensus 76 -------~~-~~~~~~~aln~a~~~~G~~i~v~~~~~~~~Pi~i~~~~~~~~~------~~~~~~~~i~v~~~s~~~iie 141 (366)
T TIGR01981 76 -------VL-SDEDRFLALNAALFNDGTVLYVPKGVEVEEPIEIKFIGVGGEK------NFVHPRLLIIVEKGSKITVIE 141 (366)
T ss_pred -------Cc-CCccHHHHHHHHHhCCeEEEEECCCCCcCCCEEEEEEEcCCCc------cceeeEEEEEECCCCEEEEEE
Confidence 11 2479999999999999999999999999999999998765321 357899999999999999999
Q ss_pred EeecCCC-CcceeeeeEEEEEECCCCEEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEEEeCCeeeeEEeEEEEEcCC
Q 016848 246 EFVGKEG-NDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPD 324 (381)
Q Consensus 246 ~~~~~~~-~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~~~Gg~~~r~~~~~~L~G~~ 324 (381)
+|.+... ...+++|.++||++++||+|+|+++|.++.+++|+..+++.++++|+|+++.+.+||+++|+++.+.|.|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~ei~~~~~A~l~~~~iq~~~~~~~~~~~~~~~~~~~a~~~~~~~~~gg~~~r~~~~~~l~G~~ 221 (366)
T TIGR01981 142 RFETISLNSGKAFTNSVVEITVGANASVIFVKVQFFSKNSTHFSNHRAFIGRDATLRLAVVNLGGKLSRHNFDVDLEGEG 221 (366)
T ss_pred EecCCCCCCcccEEEEEEEEEECCCCEEEEEEEEcCCCCcEEEEEeEEEEcCCCEEEEEEEEcCCccEEEeeeEEEEcCC
Confidence 9987531 235799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEEEEEeEEEecC
Q 016848 325 TETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381 (381)
Q Consensus 325 a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~VF~G~I~V~~ 381 (381)
|+++++|++++.++|++|+++.|+|.+|+|+|+|++|||++ |+|+++|+|+|+|++
T Consensus 222 a~~~~~g~~~~~~~q~~D~~~~i~h~~~~t~s~~~~kgvl~-d~s~~vf~G~i~I~~ 277 (366)
T TIGR01981 222 SKLEVKGLAFGAGSQHVDVRTNVVHNGPDTKSNILHRGILD-DRAHGVFRGIIHIPK 277 (366)
T ss_pred cEEEEEEEEECCCCEEeccCeEEEEcCCCcEEEEEEEEEEc-CCcEEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999 999999999999975
No 6
>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-43 Score=350.85 Aligned_cols=301 Identities=22% Similarity=0.282 Sum_probs=251.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCC---CCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcceEEEECCEEcccccCC
Q 016848 69 QPLPLQKLRDSSSQTLLSTPWP---SRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNL 145 (381)
Q Consensus 69 ~p~~l~~~R~~a~~~~~~l~~P---t~k~E~WryT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lvfvnG~~~~~~s~~ 145 (381)
+|+|+.++|.++++.+..+++| ++|.+.|+|++++.+....... .+.....+++.+. .++.++..........
T Consensus 11 ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~--~~~~~~~~~~~~~~~~ 86 (412)
T COG0719 11 EPEWMLALRLKALRASPDLEMPEVPTRRDELWELDFLDRLYYLAPGE--ASFKRLGIPDAEE--VLAQCDSVVVYHAVSG 86 (412)
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCcccccccCcChhHhhhccCCCc--ccccccCCCchhc--cceeecceeehhhcch
Confidence 7999999999999999999998 3667999999988777653221 1111122332221 1345554433333333
Q ss_pred CCCCCCeEEEeccCCchhHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCc
Q 016848 146 SNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLP 225 (381)
Q Consensus 146 ~~lp~GV~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~ 225 (381)
...++||+++++-...+++.++|++.......+++|++||+|++++|+|||||+|++++.||+++|+..+... .
T Consensus 87 ~~~~~gv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~aL~~a~~~~g~fiyVp~g~~~~~Pi~~~~~~~~~~~------~ 160 (412)
T COG0719 87 ELAPEGVIVEDILKEHPDLVKKYFGKGVVPDDDDKFAALNAALFSDGTFIYVPKGVEVPTPIQLYFIINGENT------G 160 (412)
T ss_pred hhhhCccEEeechhhhhHHHHHhCCCcccCCCcceeeeeeeeEEcCcEEEEeCCCceeccceEEEEEecCCCc------c
Confidence 4457899999994444788899988722224689999999999999999999999999999999988754221 3
Q ss_pred ceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEE
Q 016848 226 ISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEV 305 (381)
Q Consensus 226 ~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~ 305 (381)
.++.|++|++|+||++++||+|.++ .....+++.++||++++||+|+|+.+|+|+....++..+.+..+++|+++|+.+
T Consensus 161 ~q~~~~lIiveega~v~~ie~~~~p-~~~~~~h~~vvei~v~~nA~v~~~~vqn~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (412)
T COG0719 161 VQFERTLIIVEEGAEITVIEGCSAP-VGSGSLHNGVVEIFVGENASLTYTTVQNWSPVYNHLTKRAAVEEEDATVRWTQV 239 (412)
T ss_pred ceeeeEEEEECCCCEEEEEccccCC-CCCCcceeeEEEEEEcCCCEEEEEEecccccceeeeeeeeeeeccCcEEEEEEE
Confidence 5899999999999999999999875 344566999999999999999999999999988888888899999999999999
Q ss_pred EeCCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEEEEEeEEEecC
Q 016848 306 STGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381 (381)
Q Consensus 306 ~~Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~VF~G~I~V~~ 381 (381)
.+|++++|.+..+.|.|++|.++++|++++.++|++|+.++|.|.||+|.|++++|||+. |+|+.+|+|+|+|.+
T Consensus 240 ~~G~~~t~~~~~~~l~Ge~a~~e~~sv~~~~~~q~~D~~~~v~h~g~~t~s~i~~kgI~~-d~a~~vfrG~i~i~~ 314 (412)
T COG0719 240 TLGSKVTRKYPSVRLKGEGADGELLSVAFAGGGQHMDVGTKMIHNGPNTRSNILSKGIVK-DGARTVFRGLIDIRK 314 (412)
T ss_pred ecCCceEEEeceEEEEcCCceEEEEEEEEccCCeEEcccceEEEecCCceeEEEEEEEEc-CCCEEEEEeEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999964
No 7
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=99.96 E-value=3.3e-27 Score=220.05 Aligned_cols=155 Identities=27% Similarity=0.457 Sum_probs=132.4
Q ss_pred cceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEE
Q 016848 225 PISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVE 304 (381)
Q Consensus 225 ~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~ 304 (381)
.++++|++|++++||+++|+|.+.... ...++++.+++|++++||+|+|+.+|+++.+..++..+++.++++|+++|+.
T Consensus 3 ~~~~~~~~I~v~~~s~~~i~~~~~~~~-~~~~~~~~~~~i~v~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 81 (229)
T PF01458_consen 3 GAQFPRNLIIVEEGSEVTIIESYSSNS-GESSLHNGVIEIYVGENARLKYVSVQNWGENSIHFSNTRVILGENASLNWVS 81 (229)
T ss_dssp EEEEEEEEEEE-TT-EEEEEEEEEETT-SSEEEEEEEEEEEE-TT-EEEEEEEEE--TCEEEEEEEEEEE-TT-EEEEEE
T ss_pred ccEeeeEEEEECCCCEEEEEEEeCCCC-CCceEEEEEEEEEECCCcEEEEEEEecCCCcEEEEEEEEEEEcCceEEEEEE
Confidence 468999999999999999999965543 4589999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEEEEEeEEEecC
Q 016848 305 VSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381 (381)
Q Consensus 305 ~~~Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~VF~G~I~V~~ 381 (381)
+.+|++++|+++++.|.|++|.++++|++++.++|++|+++.+.|.+|+|+|++++|||+. |+|+++|+|+|+|.+
T Consensus 82 ~~~g~~~~~~~~~~~l~G~~s~~~~~~~~~~~~~~~~d~~~~i~h~~~~t~s~~~~r~v~~-d~s~~vf~G~i~i~~ 157 (229)
T PF01458_consen 82 VSLGGKMSRNRIEIELNGEGSSAELNGVYLGSGDQRIDINTNIIHNGPNTTSNILSRGVLK-DKSKVVFRGRIKIEK 157 (229)
T ss_dssp EES--SEEEEEEEEEE-STT-EEEEEEEEEE-TT-EEEEEEEEEE-STT-EEEEEEEEEES-TTSEEEEEEEEEEEC
T ss_pred EEeCCeeEEEEEEEEEcCCCCEEEEEEEEEecCCEEEeccEEEEEECCCcEEEEEEEEEEc-CCceEEEEeEEEEhh
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999975
No 8
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=98.71 E-value=2.4e-05 Score=72.94 Aligned_cols=175 Identities=16% Similarity=0.148 Sum_probs=115.7
Q ss_pred eEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCE
Q 016848 192 LGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGK 271 (381)
Q Consensus 192 G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~ 271 (381)
-+.|.|.+|.++. |...+...... .......+-|.+++||+++++...... ...+....+.+.++++|+
T Consensus 8 ~~~I~v~~~s~~~--i~~~~~~~~~~------~~~~~~~~~i~v~~~a~l~~~~~~~~~---~~~~~~~~~~~~~~~~a~ 76 (229)
T PF01458_consen 8 RNLIIVEEGSEVT--IIESYSSNSGE------SSLHNGVIEIYVGENARLKYVSVQNWG---ENSIHFSNTRVILGENAS 76 (229)
T ss_dssp EEEEEE-TT-EEE--EEEEEEETTSS------EEEEEEEEEEEE-TT-EEEEEEEEE-----TCEEEEEEEEEEE-TT-E
T ss_pred eEEEEECCCCEEE--EEEEeCCCCCC------ceEEEEEEEEEECCCcEEEEEEEecCC---CcEEEEEEEEEEEcCceE
Confidence 4678999998864 21111111111 135566677999999999999754432 245677889999999999
Q ss_pred EEEEEEEecCCCceEEEEEEEEE-cCCcEEEEEEEEeCCeeee--EEeEEEEEcCCeEEEEEEEEEecCCeEEeeee--E
Q 016848 272 VRHSYLQNQSLNAAHIKWTAVRQ-ETASGYELVEVSTGGKLSR--HNVHVQQLGPDTETELSSFHLLVSDQTQDLHS--R 346 (381)
Q Consensus 272 l~~~~vq~~~~~~~~~~~~~v~~-~~~a~~~~~~~~~Gg~~~r--~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~--~ 346 (381)
++++.+...+ .. ......+.+ +++|+++...+.++.+-.+ ....+.+.|+++..++..-.++.++.+.=+.. .
T Consensus 77 ~~~~~~~~g~-~~-~~~~~~~~l~G~~s~~~~~~~~~~~~~~~~d~~~~i~h~~~~t~s~~~~r~v~~d~s~~vf~G~i~ 154 (229)
T PF01458_consen 77 LNWVSVSLGG-KM-SRNRIEIELNGEGSSAELNGVYLGSGDQRIDINTNIIHNGPNTTSNILSRGVLKDKSKVVFRGRIK 154 (229)
T ss_dssp EEEEEEES---SE-EEEEEEEEE-STT-EEEEEEEEEE-TT-EEEEEEEEEE-STT-EEEEEEEEEESTTSEEEEEEEEE
T ss_pred EEEEEEEeCC-ee-EEEEEEEEEcCCCCEEEEEEEEEecCCEEEeccEEEEEECCCcEEEEEEEEEEcCCceEEEEeEEE
Confidence 9999995544 33 333455555 9999999999998666554 55579999999999999999998876655554 7
Q ss_pred EEEecCCcEEEEEEEEEEeCCCeEEEEEeEEEe
Q 016848 347 LLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKV 379 (381)
Q Consensus 347 i~H~~p~t~S~ql~KgVl~~d~s~~VF~G~I~V 379 (381)
|...+++|.++|.-++++.+|+|+..-.=.+.|
T Consensus 155 i~~~a~~s~~~q~~~~llls~~A~~~s~P~LeI 187 (229)
T PF01458_consen 155 IEKGAQGSDAHQECRNLLLSDEARAYSIPELEI 187 (229)
T ss_dssp EECTSTTEEEEEEEEEEE-STT-EEEEEEEEEE
T ss_pred EhhhhhCChheeeEeeEEccCCeEEEEEEhHhc
Confidence 778889999999999999988888765544443
No 9
>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional
Probab=98.18 E-value=0.0012 Score=67.13 Aligned_cols=171 Identities=6% Similarity=0.034 Sum_probs=118.5
Q ss_pred CCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCC
Q 016848 190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKG 269 (381)
Q Consensus 190 ~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~ 269 (381)
..-..|.+.+|.++. |...|...++. ....+..+-|.+++||+++.+.-... +...++-....+.++++
T Consensus 171 ~~r~lI~~e~~a~~t--iie~~~s~~~~------~~~~n~v~ei~~~~~A~l~~~~lq~~---~~~~~~~~~~~~~~~~~ 239 (424)
T PRK10948 171 HYRHHLDLAEGAEAT--VIEHFVSLNEA------RHFTGARLTMNVADNAHLNHIKLAFE---NPSSYHFAHNDLLLGRD 239 (424)
T ss_pred cceEEEEECCCCEEE--EEEEeecCCCC------ceeEeeeEEEEECCCCEEEEEEEEcc---CCCcEEEEEeEEEEcCC
Confidence 456789999998764 33334332221 13456677899999999999865432 12344556788899999
Q ss_pred CEEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEEEeCCeeeeEEeE--EEEEcCCeEEEEEEEEEecCC--eEEeeee
Q 016848 270 GKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVH--VQQLGPDTETELSSFHLLVSD--QTQDLHS 345 (381)
Q Consensus 270 A~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~~~Gg~~~r~~~~--~~L~G~~a~~~l~g~~l~~~~--q~~D~~~ 345 (381)
|++++..+...+ ............+++|..++..+.++.+-...+++ +...|+++..+..--.+..++ -.+.=..
T Consensus 240 s~~~~~~~~~G~-~~~r~~~~~~L~G~~a~~~~~g~~l~~~~q~~D~~~~i~H~~p~t~S~~~~kgvl~d~s~~vF~G~i 318 (424)
T PRK10948 240 ARAFSHSFLLGA-AVLRHNTSTQLNGENSTLRLNSLAMPVKNEVCDTRTWLEHNKGYCNSRQLHKTIVSDKGRAVFNGLI 318 (424)
T ss_pred CEEEEEEEEeCC-ceEEEeeeEEEECCCcEEEEEEEEEcCCCEEEEccEEEEEcCCCcEEEEEEEEEEcCCCEEEEEEEE
Confidence 999999887644 33333333344589999999999997666555544 678889888877555555555 4445455
Q ss_pred EEEEecCCcEEEEEEEEEEeCCCeEEE
Q 016848 346 RLLLDHPRGYCRQLHKCIVAHSLGQAV 372 (381)
Q Consensus 346 ~i~H~~p~t~S~ql~KgVl~~d~s~~V 372 (381)
.|...+.+|.+.|.-++++.+|+|+..
T Consensus 319 ~V~~~A~~t~a~q~~~~LLLs~~A~~~ 345 (424)
T PRK10948 319 KVAQHAIKTDGQMTNNNLLLGKLAEVD 345 (424)
T ss_pred EEecCCcCcccEEeecEEEECCCcceE
Confidence 556668999999999999997777754
No 10
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=98.09 E-value=0.001 Score=66.39 Aligned_cols=171 Identities=15% Similarity=0.117 Sum_probs=120.7
Q ss_pred CCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCC
Q 016848 190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKG 269 (381)
Q Consensus 190 ~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~ 269 (381)
..-..|.|.+|.++. |.-.+....... .....+..+-|.+++||+++++...... ...++-..+.+.++++
T Consensus 124 ~~~~~i~v~~~s~~~--iie~~~~~~~~~----~~~~~~~~~ei~~~~~A~l~~~~iq~~~---~~~~~~~~~~~~~~~~ 194 (366)
T TIGR01981 124 HPRLLIIVEKGSKIT--VIERFETISLNS----GKAFTNSVVEITVGANASVIFVKVQFFS---KNSTHFSNHRAFIGRD 194 (366)
T ss_pred eeEEEEEECCCCEEE--EEEEecCCCCCC----cccEEEEEEEEEECCCCEEEEEEEEcCC---CCcEEEEEeEEEEcCC
Confidence 346789999998864 222222111010 0124566778999999999998654321 2345556789999999
Q ss_pred CEEEEEEEEecCCCceEEEEEEEE-EcCCcEEEEEEEEeCCee--eeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeee-
Q 016848 270 GKVRHSYLQNQSLNAAHIKWTAVR-QETASGYELVEVSTGGKL--SRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHS- 345 (381)
Q Consensus 270 A~l~~~~vq~~~~~~~~~~~~~v~-~~~~a~~~~~~~~~Gg~~--~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~- 345 (381)
|+++...+...+.-+. ....+. .+++|+++...+.++.+- .-....+.+.|+++..+...-.+..++.+.-+.-
T Consensus 195 a~~~~~~~~~gg~~~r--~~~~~~l~G~~a~~~~~g~~~~~~~q~~D~~~~i~h~~~~t~s~~~~kgvl~d~s~~vf~G~ 272 (366)
T TIGR01981 195 ATLRLAVVNLGGKLSR--HNFDVDLEGEGSKLEVKGLAFGAGSQHVDVRTNVVHNGPDTKSNILHRGILDDRAHGVFRGI 272 (366)
T ss_pred CEEEEEEEEcCCccEE--EeeeEEEEcCCcEEEEEEEEECCCCEEeccCeEEEEcCCCcEEEEEEEEEEcCCcEEEEEEE
Confidence 9999999987654333 234454 479999999999886555 4455668899999999888888887776655544
Q ss_pred -EEEEecCCcEEEEEEEEEEeCCCeEE
Q 016848 346 -RLLLDHPRGYCRQLHKCIVAHSLGQA 371 (381)
Q Consensus 346 -~i~H~~p~t~S~ql~KgVl~~d~s~~ 371 (381)
.|...+.+|.+.|.-++++.+++|+.
T Consensus 273 i~I~~~A~~t~a~q~~~~LlLs~~A~~ 299 (366)
T TIGR01981 273 IHIPKGAKGTDAEQLNRNLLLSDDARA 299 (366)
T ss_pred EEECCCcCcCccccEeeeEEECCCccc
Confidence 45667899999999999999566664
No 11
>TIGR01980 sufB FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=98.05 E-value=0.0022 Score=65.73 Aligned_cols=171 Identities=10% Similarity=0.057 Sum_probs=121.8
Q ss_pred CeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCC
Q 016848 191 DLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGG 270 (381)
Q Consensus 191 ~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A 270 (381)
.-..|.+.+|.++.- |....+.... .....+.-+-|.+++||+++++.-..-. ...++-..+.+.++++|
T Consensus 205 ~r~lIi~ee~s~~~i---ie~~~s~~~~----~~~~~~~v~Ei~v~~~A~v~~~~iq~~~---~~~~~~~~~~~~~~~~a 274 (448)
T TIGR01980 205 EHTLIIADEGASVHY---IEGCSAPIYS----TNSLHAAVVELIVKEDARVRYSTVQNWS---KNVYNLVTKRALVEENG 274 (448)
T ss_pred eeEEEEECCCCEEEE---EEeccccCCC----ccceEEEEEEEEEcCCCEEEEEEEeecC---CCeEEEEEEEEEEcCCC
Confidence 467888999988641 2122211010 0134556667999999999998654332 24556677889999999
Q ss_pred EEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEEEeCCeee--eEEeEEEEEcCCeEEEEEEEEEecCCeEEeeee--E
Q 016848 271 KVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLS--RHNVHVQQLGPDTETELSSFHLLVSDQTQDLHS--R 346 (381)
Q Consensus 271 ~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~~~Gg~~~--r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~--~ 346 (381)
++++..+...+.-+++ .......+++|..++..+.++.+-. -....+.+.|+++..++..-.+..++.+.=++- .
T Consensus 275 ~~~~~~~~lG~~~s~~-~~~~~L~G~~a~~~~~~~~l~~~~q~~D~~t~v~h~~p~t~s~~~~k~v~~d~s~~vf~G~i~ 353 (448)
T TIGR01980 275 TMEWVSGSIGSKITMK-YPSSILKGEGAKTEFLSIAFAGKGQHLDTGAKMIHLAPNTSSTIISKSISKGGGKSTYRGLVK 353 (448)
T ss_pred EEEEEEEEecCceEEE-eceEEEEcCCcEEEEEEEEecCCCEEEEcceEEEEeCCCcEEEEEEEEEECCCcEEEEEEEEE
Confidence 9999999875544442 2233446899999999998865544 455679999999999988888888776666555 4
Q ss_pred EEEecCCcEEEEEEEEEEeCCCeEEE
Q 016848 347 LLLDHPRGYCRQLHKCIVAHSLGQAV 372 (381)
Q Consensus 347 i~H~~p~t~S~ql~KgVl~~d~s~~V 372 (381)
|...++.|.+.|.-++++.+|+|+..
T Consensus 354 v~~~A~~t~a~q~~~~LlLs~~a~~~ 379 (448)
T TIGR01980 354 IGPGAKGAKSHVQCDSLLIDDESASD 379 (448)
T ss_pred ECCCCCCCccEEEEeEEEECCCcceE
Confidence 66678999999999999996677653
No 12
>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0058 Score=62.00 Aligned_cols=168 Identities=14% Similarity=0.074 Sum_probs=118.3
Q ss_pred eEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCE
Q 016848 192 LGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGK 271 (381)
Q Consensus 192 G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~ 271 (381)
-..|.|.+|.++. ++--.+.... .+ ......+-|++++||+++++....-. ..+.+.....+..+++|.
T Consensus 165 ~~lIiveega~v~----~ie~~~~p~~--~~--~~h~~vvei~v~~nA~v~~~~vqn~~---~~~~~~~~~~~~~~~~a~ 233 (412)
T COG0719 165 RTLIIVEEGAEIT----VIEGCSAPVG--SG--SLHNGVVEIFVGENASLTYTTVQNWS---PVYNHLTKRAAVEEEDAT 233 (412)
T ss_pred eEEEEECCCCEEE----EEccccCCCC--CC--cceeeEEEEEEcCCCEEEEEEecccc---cceeeeeeeeeeeccCcE
Confidence 4678888888542 2222211110 00 12355667999999999998654321 234455666688899999
Q ss_pred EEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEEEeCCe--eeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEE
Q 016848 272 VRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGK--LSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLL 349 (381)
Q Consensus 272 l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~~~Gg~--~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H 349 (381)
++++.+...+....+. ......+++|+.++..+.++++ ..-....+.++|+++..++..-.+..++.+.-++-.+.-
T Consensus 234 ~~~~~~~~G~~~t~~~-~~~~l~Ge~a~~e~~sv~~~~~~q~~D~~~~v~h~g~~t~s~i~~kgI~~d~a~~vfrG~i~i 312 (412)
T COG0719 234 VRWTQVTLGSKVTRKY-PSVRLKGEGADGELLSVAFAGGGQHMDVGTKMIHNGPNTRSNILSKGIVKDGARTVFRGLIDI 312 (412)
T ss_pred EEEEEEecCCceEEEe-ceEEEEcCCceEEEEEEEEccCCeEEcccceEEEecCCceeEEEEEEEEcCCCEEEEEeEEEE
Confidence 9999997766544443 3444567999999999999766 445566689999999999988888887766666655555
Q ss_pred --ecCCcEEEEEEEEEEeCCCeEE
Q 016848 350 --DHPRGYCRQLHKCIVAHSLGQA 371 (381)
Q Consensus 350 --~~p~t~S~ql~KgVl~~d~s~~ 371 (381)
.++++.+++--+.++.+|.|++
T Consensus 313 ~~~A~~s~a~~~c~~LlLs~~a~~ 336 (412)
T COG0719 313 RKGATGSDAYQECRTLLLSDDARA 336 (412)
T ss_pred ecCCCCCchheeeceEEecCCccc
Confidence 8899999999999998566765
No 13
>CHL00085 ycf24 putative ABC transporter
Probab=97.60 E-value=0.019 Score=59.41 Aligned_cols=141 Identities=7% Similarity=-0.087 Sum_probs=101.7
Q ss_pred eeceEEEEeCCCCEEEEEEEeec-CCCCcceeeeeEEEEEECCCCEEEEEEEEec---CCCceEEEEEEEEEcCCcEEEE
Q 016848 227 SNPRVVVLVEEGGEVGIIEEFVG-KEGNDCYWANSVLEVVIGKGGKVRHSYLQNQ---SLNAAHIKWTAVRQETASGYEL 302 (381)
Q Consensus 227 ~~~r~lI~veega~~~iiE~~~~-~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~---~~~~~~~~~~~v~~~~~a~~~~ 302 (381)
...-.+|.|.+|.++.+-..+.. ..+ .....+..+-|.+++||+++++.-... .....|..-+.+.++++|++++
T Consensus 192 ~~~G~fi~Vp~gv~~~~pl~~~~~~~~-~~~~~~~r~lIi~eega~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~ 270 (485)
T CHL00085 192 FSDGSFCYIPKDTKCPLELSTYFRINN-EESGQFERTLIIAEENSYVSYLEGCTAPQYDTNQLHAAVVELIALENAEIKY 270 (485)
T ss_pred cCCeEEEEECCCCcceEEEEEEEeecC-CccceeeeEEEEECCCCEEEEEEEeccCCCCccceEEEEEEEEECCCCEEEE
Confidence 34467899999988776433322 221 123567899999999999999865442 3456788889999999999999
Q ss_pred EEEEe---------CCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEE
Q 016848 303 VEVST---------GGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQA 371 (381)
Q Consensus 303 ~~~~~---------Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~ 371 (381)
+.+.. ++............|++|.++...+.++.+-...+. .+.+.|+++.++..--.++. +..+.
T Consensus 271 ~~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~r~~~--~~~L~G~~a~~~~~~i~l~~-~~Q~~ 345 (485)
T CHL00085 271 STVQNWYAGDENGEGGIYNFVTKRGLCAGKNSKISWTQVETGSAITWKYP--SCILIGDNSQGEFYSVALTN-NYQQA 345 (485)
T ss_pred EEEEeecCccccccCceeeeeeeEEEEEcCCcEEEEEEEEecCceEEeec--eEEEecCCcEEEEEEEEEcc-CCEEE
Confidence 99876 223322334445568999999999888888777775 47799999888887777776 54443
No 14
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=97.52 E-value=0.026 Score=58.44 Aligned_cols=141 Identities=8% Similarity=-0.084 Sum_probs=101.5
Q ss_pred eeceEEEEeCCCCEEEEEEE-eecCCCCcceeeeeEEEEEECCCCEEEEEEEEec---CCCceEEEEEEEEEcCCcEEEE
Q 016848 227 SNPRVVVLVEEGGEVGIIEE-FVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQ---SLNAAHIKWTAVRQETASGYEL 302 (381)
Q Consensus 227 ~~~r~lI~veega~~~iiE~-~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~---~~~~~~~~~~~v~~~~~a~~~~ 302 (381)
...-.+|.|.+|.++.+-.. +..... ........+-|.+++||+++++.-..- ....+|..-+.+.++++|++++
T Consensus 193 ~~~G~fi~Vp~gv~~~~pi~~~~~~~~-~~~~~~~r~lIi~ee~S~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~ 271 (486)
T PRK11814 193 FSDGSFVYIPKGVRCPMELSTYFRINA-ANTGQFERTLIIADEGSYVSYLEGCTAPMRDENQLHAAVVELVALDDAEIKY 271 (486)
T ss_pred cCCeEEEEECCCCceeEEEEEEEeecC-CCcceeeEEEEEECCCCEEEEEEEecCCCCCccceeeEEEEEEECCCCEEEE
Confidence 44567899999999876433 322221 123567899999999999999765542 3456788889999999999999
Q ss_pred EEEEeC-------Ceeee--EEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEE
Q 016848 303 VEVSTG-------GKLSR--HNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQA 371 (381)
Q Consensus 303 ~~~~~G-------g~~~r--~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~ 371 (381)
+.+..= +.-+. ......-.|++|.++...+.++.+-...+. .+.+.|+++.++..--.++. ++.+.
T Consensus 272 ~~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~lG~~~~r~~~--~~~L~G~ga~~~~~gi~l~~-~~q~~ 346 (486)
T PRK11814 272 STVQNWYPGDENGKGGIYNFVTKRGLCRGENSKISWTQVETGSAITWKYP--SCILRGDNSVGEFYSVALTN-GHQQA 346 (486)
T ss_pred EEEEeecCccccCCCceEEEeeeEEEEecCCcEEEEEEEEcCCceEEeec--ceEEecCCcEEEEEeEEecc-CCEEE
Confidence 998751 22222 233444368999999998888888777774 47799999988888777776 55443
No 15
>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein. Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.
Probab=87.86 E-value=9 Score=35.08 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=49.2
Q ss_pred eceEEEEeCCCCEEEEEEEeec-C-CCCcceeeeeEEEEEECCCCEEEEEEEEe-cCCCceEEEEEEEEEcCCcEEEEEE
Q 016848 228 NPRVVVLVEEGGEVGIIEEFVG-K-EGNDCYWANSVLEVVIGKGGKVRHSYLQN-QSLNAAHIKWTAVRQETASGYELVE 304 (381)
Q Consensus 228 ~~r~lI~veega~~~iiE~~~~-~-~~~~~~~~n~v~ei~v~~~A~l~~~~vq~-~~~~~~~~~~~~v~~~~~a~~~~~~ 304 (381)
..++-|.+++||++.|...=.. . ...........+++.|++||.|+|.--.. .-.++.....+.+.+.++|++-+..
T Consensus 16 ~l~~~i~v~~ga~~~ltTqaatkvy~~~~~~~a~q~~~~~v~~ga~Le~lP~p~I~f~~A~~~q~~~v~l~~~A~l~~~e 95 (209)
T PF01774_consen 16 RLRIDITVGPGARLLLTTQAATKVYRMRGGRPARQRIRITVEEGAYLEYLPDPTIPFAGARFRQRTRVDLAPGASLIYWE 95 (209)
T ss_dssp EEEEEEEE-TT-EEEEE----EEE---TTS--EEEEEEEEE-TT-EEEE----EEE-TT-EEEEEEEEEE-TT-EEEEEE
T ss_pred EEEEEEEECCCCEEEEechhhhhhcCCCCCCcEEEEEEEEECCCCEEEEcCCCCEeeCCCEEEEEEEEEECCCCEEEEEE
Confidence 4578899999999998742110 0 01112347789999999999999964332 2246778888999999999999998
Q ss_pred EEeCCee
Q 016848 305 VSTGGKL 311 (381)
Q Consensus 305 ~~~Gg~~ 311 (381)
+..-|+.
T Consensus 96 ~i~~GR~ 102 (209)
T PF01774_consen 96 IITPGRP 102 (209)
T ss_dssp EEE-S-G
T ss_pred ecccCCC
Confidence 8876655
No 16
>COG0829 UreH Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]
Probab=86.56 E-value=8.6 Score=36.77 Aligned_cols=117 Identities=10% Similarity=0.019 Sum_probs=68.9
Q ss_pred CCCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeec-CCCCcceeeeeEEEEEEC
Q 016848 189 APDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVG-KEGNDCYWANSVLEVVIG 267 (381)
Q Consensus 189 ~~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~-~~~~~~~~~n~v~ei~v~ 267 (381)
...-+.|.-|.-.. +.+.+++-++.+++-- ..-....-|.+++|+++.|.-.-.. .-....+....-++|.|+
T Consensus 28 ~~~plkV~~p~y~~-~~~~~~~li~~~GGv~-----gGD~l~~di~lg~~a~~~iTTQsatKvYrs~~g~A~Q~~~i~vg 101 (269)
T COG0829 28 QTGPLKVQRPFYPD-EGLCEAMLIHPSGGVV-----GGDRLEIDIELGDNAKALITTQSATKVYRSPGGQATQTTNITVG 101 (269)
T ss_pred ccCCeEEEccCcCC-CCCeEEEEEeCCCCcc-----ccceEEEEEEECCCceEEEEccccceeEeCCCCceEEEEEEEEC
Confidence 33333444444222 3445555555544311 1123456799999999998732111 001123447788999999
Q ss_pred CCCEEEEEEEEecC-CCceEEEEEEEEEcCCcEEEEEEEEeCCee
Q 016848 268 KGGKVRHSYLQNQS-LNAAHIKWTAVRQETASGYELVEVSTGGKL 311 (381)
Q Consensus 268 ~~A~l~~~~vq~~~-~~~~~~~~~~v~~~~~a~~~~~~~~~Gg~~ 311 (381)
+||.|+|.-=..-- +++.-..++.+.++.+|++-...+..=|+.
T Consensus 102 ~nA~LewlPq~tI~F~~a~f~q~~~~~L~~sA~l~~~E~~~~GR~ 146 (269)
T COG0829 102 ENARLEWLPQETIPFEGARFKQHTRFELASSATLLYWEILALGRV 146 (269)
T ss_pred CCCEEEecCCcceecCCceeEEEEEEEeCCCceehhhhhhhcCcc
Confidence 99999995422211 244556678899999999887776654443
No 17
>COG0829 UreH Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]
Probab=57.63 E-value=92 Score=29.86 Aligned_cols=69 Identities=7% Similarity=0.062 Sum_probs=51.8
Q ss_pred eEEEEEECCCCEEEEE-----EEEecCCCceEEEEEEEEEcCCcEEEEEE---EEeCCeeeeEEeEEEEEcCCeEEEEE
Q 016848 260 SVLEVVIGKGGKVRHS-----YLQNQSLNAAHIKWTAVRQETASGYELVE---VSTGGKLSRHNVHVQQLGPDTETELS 330 (381)
Q Consensus 260 ~v~ei~v~~~A~l~~~-----~vq~~~~~~~~~~~~~v~~~~~a~~~~~~---~~~Gg~~~r~~~~~~L~G~~a~~~l~ 330 (381)
.-.+|.+++||++... +|+...... .-..+.+.++++|.++|.. +-+.+..-+.++.++|. ++|++-..
T Consensus 62 l~~di~lg~~a~~~iTTQsatKvYrs~~g~-A~Q~~~i~vg~nA~LewlPq~tI~F~~a~f~q~~~~~L~-~sA~l~~~ 138 (269)
T COG0829 62 LEIDIELGDNAKALITTQSATKVYRSPGGQ-ATQTTNITVGENARLEWLPQETIPFEGARFKQHTRFELA-SSATLLYW 138 (269)
T ss_pred EEEEEEECCCceEEEEccccceeEeCCCCc-eEEEEEEEECCCCEEEecCCcceecCCceeEEEEEEEeC-CCceehhh
Confidence 3678999999999874 566655444 5667889999999999974 66666666778888886 67765433
No 18
>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein. Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.
Probab=43.27 E-value=2.6e+02 Score=25.43 Aligned_cols=91 Identities=10% Similarity=0.093 Sum_probs=49.7
Q ss_pred eEEEEEECCCCEEEEEE-----EEecCCCceEEEEEEEEEcCCcEEEEEE---EEeCCeeeeEEeEEEEEcCCeEE-EEE
Q 016848 260 SVLEVVIGKGGKVRHSY-----LQNQSLNAAHIKWTAVRQETASGYELVE---VSTGGKLSRHNVHVQQLGPDTET-ELS 330 (381)
Q Consensus 260 ~v~ei~v~~~A~l~~~~-----vq~~~~~~~~~~~~~v~~~~~a~~~~~~---~~~Gg~~~r~~~~~~L~G~~a~~-~l~ 330 (381)
.-.+|.+++||++.... |.....+........+.++++|.++|.- +-+.+.--+..+.++|. ++|.+ -..
T Consensus 17 l~~~i~v~~ga~~~ltTqaatkvy~~~~~~~a~q~~~~~v~~ga~Le~lP~p~I~f~~A~~~q~~~v~l~-~~A~l~~~e 95 (209)
T PF01774_consen 17 LRIDITVGPGARLLLTTQAATKVYRMRGGRPARQRIRITVEEGAYLEYLPDPTIPFAGARFRQRTRVDLA-PGASLIYWE 95 (209)
T ss_dssp EEEEEEE-TT-EEEEE----EEE---TTS--EEEEEEEEE-TT-EEEE----EEE-TT-EEEEEEEEEE--TT-EEEEEE
T ss_pred EEEEEEECCCCEEEEechhhhhhcCCCCCCcEEEEEEEEECCCCEEEEcCCCCEeeCCCEEEEEEEEEEC-CCCEEEEEE
Confidence 36889999999998754 3333223335667889999999999975 55677777888999986 45554 444
Q ss_pred EEEEecC--Ce-----EEeeeeEEEEec
Q 016848 331 SFHLLVS--DQ-----TQDLHSRLLLDH 351 (381)
Q Consensus 331 g~~l~~~--~q-----~~D~~~~i~H~~ 351 (381)
.+..+.- ++ +++..+.|...+
T Consensus 96 ~i~~GR~a~GE~f~~~~~~~~~~I~~~g 123 (209)
T PF01774_consen 96 IITPGRPARGERFAFGRYRSRLEIYRDG 123 (209)
T ss_dssp EEE-S-GGGT--S-SSEEEEEEEEEETT
T ss_pred ecccCCCcCCCCccceEEEEEEEEEECC
Confidence 4444432 22 555555555533
No 19
>PF06069 PerC: PerC transcriptional activator; InterPro: IPR024684 This family includes PerC, which is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria []. It also includes a number of uncharacterised proteins, such as Orf40 from bacteriophage SfV.
Probab=40.88 E-value=29 Score=27.49 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCCCCCC-CC
Q 016848 70 PLPLQKLRDSSSQTLLSTPWPSRKDEPFR-FT 100 (381)
Q Consensus 70 p~~l~~~R~~a~~~~~~l~~Pt~k~E~Wr-yT 100 (381)
+.-+.++|+++-....++|++....|.|| |+
T Consensus 57 ~~~f~~l~~Aa~~T~~~MGi~~~~~~~fR~y~ 88 (90)
T PF06069_consen 57 PDNFGDLRKAADRTQKRMGIDQPNGEIFRNYK 88 (90)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCccHHHhcCC
Confidence 45788999999999999999888888887 44
Done!