Query 016848
Match_columns 381
No_of_seqs 226 out of 1462
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 04:47:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vh4_A SUFD protein; structura 100.0 2.2E-54 7.5E-59 435.1 36.6 294 71-381 25-323 (435)
2 4dn7_A ABC transporter, ATP-bi 100.0 8.4E-40 2.9E-44 327.0 31.8 236 130-379 92-330 (429)
3 1vh4_A SUFD protein; structura 98.4 0.0002 6.7E-09 71.7 27.2 170 192-373 174-347 (435)
4 4dn7_A ABC transporter, ATP-bi 98.3 0.0003 1E-08 70.1 26.9 169 192-372 182-353 (429)
5 3sf5_B Urease accessory protei 51.5 1.4E+02 0.0048 27.0 18.0 111 228-338 62-182 (265)
6 3sf5_B Urease accessory protei 31.3 2.9E+02 0.01 24.8 12.9 75 260-336 63-146 (265)
7 1q02_A Sequestosome 1; helical 13.0 2.6E+02 0.0088 18.9 3.9 29 43-77 4-33 (52)
8 3dl8_C SECE; RECA-type ATPase 10.2 38 0.0013 23.9 -1.0 22 78-100 9-30 (65)
9 2jn4_A Hypothetical protein FI 8.4 2E+02 0.007 21.5 2.3 19 190-209 30-48 (87)
10 2ker_A Parvulustat, alpha-amyl 7.0 64 0.0022 23.5 -1.0 10 94-103 13-22 (78)
No 1
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=100.00 E-value=2.2e-54 Score=435.06 Aligned_cols=294 Identities=21% Similarity=0.258 Sum_probs=256.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccccCCCCCCCCCC-----CCCCCCCCCcceEEEECCEEcccccCC
Q 016848 71 LPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSS-----SLDVSTDAQFPSLVLIDGFIQNSALNL 145 (381)
Q Consensus 71 ~~l~~~R~~a~~~~~~l~~Pt~k~E~WryT~l~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~lvfvnG~~~~~~s~~ 145 (381)
.||.++|++||+.|.++|||++|.|+||||||+.+....+.+...... ...++ .++. ++||+||.+.+.+++
T Consensus 25 ~~l~~~R~~a~~~~~~~~~P~~~~e~w~~t~l~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~v~v~g~~~~~ls~- 101 (435)
T 1vh4_A 25 TKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALT-LDSV-RLVFVDGRYVPALSD- 101 (435)
T ss_dssp -CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCC-CCSE-EEEEETTEECGGGSC-
T ss_pred chhHHHHHHHHHHHHhCCCCCCCccccccCchHHhhcccccccccccChhHHhhhcCc-cCce-EEEEECCEEeeeccc-
Confidence 368899999999999999999999999999999998876543221111 01122 2455 599999999988776
Q ss_pred CCCCCCeEEEeccCCchhHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCc
Q 016848 146 SNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLP 225 (381)
Q Consensus 146 ~~lp~GV~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~ 225 (381)
+.+|+||+++++.+ ++|+++... .|+|++||.|++++|+|||||+|+++++||+++|+.++.+. ....
T Consensus 102 ~~~~~Gv~~~~~~~------~~~~~~~~~---~~~f~aln~a~~~~G~~i~Vp~g~~~~~Pi~l~~~~~~~~~---~~~~ 169 (435)
T 1vh4_A 102 ATEGSGYEVSINDD------RQGLPDAIQ---AEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAG---EEVN 169 (435)
T ss_dssp CCTTSSCEEEEESC------CTTCCCCSS---CCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSS---SCEE
T ss_pred cccCCCeEEEecch------hhhhhcccC---chHHHHHHHHhcCCcEEEEECCCCEecccEEEEEEecCCcc---cccc
Confidence 24789999999976 467765443 39999999999999999999999999999999887553220 0013
Q ss_pred ceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEE
Q 016848 226 ISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEV 305 (381)
Q Consensus 226 ~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~ 305 (381)
.+++|++|++|+||+++|||+|.++. ...++++.++||++++||+|+|+.+|+|+.+++++.++++.++++|+++|+.+
T Consensus 170 ~~~~r~lIi~eegs~v~iie~~~~~~-~~~~~~~~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (435)
T 1vh4_A 170 TAHYRHHLDLAEGAEATVIEHFVSLN-DARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSF 248 (435)
T ss_dssp EEEEEEEEEECTTCEEEEEEEEEESS-SSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEE
T ss_pred eeeeEEEEEECCCCEEEEEEEeccCC-cccceeeeEEEEEECCCCEEEEEEEEecCCCeEEEEEEEEEECCCCEEEEEEE
Confidence 57999999999999999999999874 34789999999999999999999999999999999999999999999999999
Q ss_pred EeCCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEEEEEeEEEecC
Q 016848 306 STGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381 (381)
Q Consensus 306 ~~Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~VF~G~I~V~~ 381 (381)
.+|++++|+++.+.|.|++|+++++|++++.++|++|+++.|+|.+|+|+|++++|||+. |+|++||+|+|+|.|
T Consensus 249 ~~G~~~~~~~~~~~L~G~~a~~~~~~~~~~~~~q~~D~~~~v~H~~~~t~S~i~~kgil~-d~s~~vf~G~i~v~~ 323 (435)
T 1vh4_A 249 LLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVS-DKGRAVFNGLINVAQ 323 (435)
T ss_dssp ECCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEEC-TTCEEEEEEEEEECT
T ss_pred EECCceEEEeeEEEEEcCCCEEEEEEEEEccCCEEEEeeEEEEEecCCcEEEEEEEEEEc-CCCeEEEEEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999965
No 2
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=100.00 E-value=8.4e-40 Score=327.00 Aligned_cols=236 Identities=19% Similarity=0.203 Sum_probs=211.3
Q ss_pred eEEEECCEEcccccCCCCCCCCeEEEeccCCch--hHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEeeeeE
Q 016848 130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSD--GIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPI 207 (381)
Q Consensus 130 ~lvfvnG~~~~~~s~~~~lp~GV~v~~l~~a~~--~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~~PI 207 (381)
..+++|...+...+ .|+||+++++.+|+. +++++|+++... ..+|+|++||+|++++|+|||||+|+++++||
T Consensus 92 ~~~q~d~~~v~~~~----~~~GV~~~~l~~Al~~~~lv~~y~~~~v~-~~~d~f~Aln~A~~~~G~fI~Vp~gv~~~~Pi 166 (429)
T 4dn7_A 92 SFLVLDNAVSHSTL----KDKNVELMSTHKAMEKYEWLKDYSWKLVQ-VDADKYTAKTYLEDADGYFIRVPAGKKTSMPV 166 (429)
T ss_dssp EEEEETTEEEEEEE----SSSSSEEEEHHHHHHHCGGGGGTTTTSSC-TTSSHHHHHHHHTTCBCEEEEECTTCBCSSCE
T ss_pred eEEEEcCceEEEee----cCCCEEEEcHHHHhhhhHHHHHHHhccCC-CCcCHHHHHHHhhCCCcEEEEECCCcEEEEEE
Confidence 36888977766432 368999999999874 567889987654 35899999999999999999999999999999
Q ss_pred EEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecCCCceEE
Q 016848 208 YLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI 287 (381)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~ 287 (381)
+++|...+.+ ..+++|++|++|+||+++|||+|.++.....++++.++||++++||+|+|+.+|+|+.+.+++
T Consensus 167 ~~~~~i~~~~-------~~~~~r~lIi~eegA~v~iie~c~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~vq~~~~~~~~~ 239 (429)
T 4dn7_A 167 QTCLMLGSKK-------AAQTVHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEMYIKKGGTLNFTMIHNWAEQIGVR 239 (429)
T ss_dssp EEEEEECSSS-------EEEEEEEEEEECTTCEEEEEEEEEECTTCCEEEEEEEEEEEECTTCEEEEEEEECCCTEEEEE
T ss_pred EEEEEEcCCc-------cceeeeEEEEECCCCEEEEEEEecCCCCcccceEEEEEEEEECCCCEEEEEEEeecCCCcEEe
Confidence 9987765432 468999999999999999999999875445689999999999999999999999999999999
Q ss_pred EEEEEEEcCCcEEEEEEEEeCC-eeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeC
Q 016848 288 KWTAVRQETASGYELVEVSTGG-KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAH 366 (381)
Q Consensus 288 ~~~~v~~~~~a~~~~~~~~~Gg-~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~ 366 (381)
.++++.++++|+|.+..+.+|| +..+.++.+.|.|++|+++++|++++.++|++|+++.|.|.+|+|+|++++|||++
T Consensus 240 ~~~~~~~~~~a~~~~~~v~~~g~~~~~~~~~~~L~Ge~A~~~~~~v~l~~g~q~~D~~t~v~H~gp~t~S~i~~k~V~~- 318 (429)
T 4dn7_A 240 PRTVVSVEEGGTYVSNYICLKPVRSVQTYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITI- 318 (429)
T ss_dssp EEEEEEECTTCEEEEEEEECSCCSEEEECCEEEECSTTCEEEEEEEEEECTTCEEEEEEEEEECSTTCEEEEEEEEEES-
T ss_pred cceeEEECCCcEEEEEEEEecCceEEeeeeeEEEecCCcEEEEEEEEecCCceEEEEEEEEEEecCCcEEEEEeeEEEe-
Confidence 9999999999999999999976 67777788999999999999999999999999999999999999999999999998
Q ss_pred CCeEEEEEeEEEe
Q 016848 367 SLGQAVFDGNVKV 379 (381)
Q Consensus 367 d~s~~VF~G~I~V 379 (381)
+|+.+|+|+|..
T Consensus 319 -~s~~vfrG~I~~ 330 (429)
T 4dn7_A 319 -GGRLIARGEMIG 330 (429)
T ss_dssp -SSEEEEEEEEEE
T ss_pred -ccEEEEeeeEec
Confidence 999999999874
No 3
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=98.39 E-value=0.0002 Score=71.71 Aligned_cols=170 Identities=6% Similarity=0.012 Sum_probs=122.3
Q ss_pred eEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCE
Q 016848 192 LGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGK 271 (381)
Q Consensus 192 G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~ 271 (381)
-..|.+.+|.++. +.-.+...... ....+..+-|++++||+++++....- +...++...+.+.+++||+
T Consensus 174 r~lIi~eegs~v~--iie~~~~~~~~------~~~~~~v~ei~v~~~A~l~~~~vq~~---~~~~~~~~~~~~~~~~~a~ 242 (435)
T 1vh4_A 174 RHHLDLAEGAEAT--VIEHFVSLNDA------RHFTGARFTINVAANAHLQHIKLAFE---NPLSHHFAHNDLLLAEDAT 242 (435)
T ss_dssp EEEEEECTTCEEE--EEEEEEESSSS------CEEEEEEEEEEECTTCEEEEEEEECC---CTTCEEEEEEEEEECTTCE
T ss_pred EEEEEECCCCEEE--EEEEeccCCcc------cceeeeEEEEEECCCCEEEEEEEEec---CCCeEEEEEEEEEECCCCE
Confidence 4668899998764 11112222111 12445556799999999999876542 1245666788899999999
Q ss_pred EEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEEEeCCe--eeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEE
Q 016848 272 VRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGK--LSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLL 349 (381)
Q Consensus 272 l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~~~Gg~--~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H 349 (381)
+++..+...+.-.++. ......+++|..++..+.++.+ ..-....+.+.|+++..++..-.+..++.+.-+.-.+.-
T Consensus 243 ~~~~~~~~G~~~~~~~-~~~~L~G~~a~~~~~~~~~~~~~q~~D~~~~v~H~~~~t~S~i~~kgil~d~s~~vf~G~i~v 321 (435)
T 1vh4_A 243 AFSHSFLLGGAVLRHN-TSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINV 321 (435)
T ss_dssp EEEEEEECCCSEEEEE-EEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEEE
T ss_pred EEEEEEEECCceEEEe-eEEEEEcCCCEEEEEEEEEccCCEEEEeeEEEEEecCCcEEEEEEEEEEcCCCeEEEEEEEEE
Confidence 9999987655333333 2333368999999999988554 455667788999999999999999988877777666666
Q ss_pred --ecCCcEEEEEEEEEEeCCCeEEEE
Q 016848 350 --DHPRGYCRQLHKCIVAHSLGQAVF 373 (381)
Q Consensus 350 --~~p~t~S~ql~KgVl~~d~s~~VF 373 (381)
.+.+|.+.|.-++++.+|+|+.-=
T Consensus 322 ~~~A~~t~a~~~~~~LlLs~~a~~~t 347 (435)
T 1vh4_A 322 AQHAIKTDGQMTNNNLLMGKLAEVDT 347 (435)
T ss_dssp CTTCTTEEEEEEEEEEECSTTCEEEE
T ss_pred ecCCCCCeeEEEeeeEEccCCCcEEe
Confidence 789999999999999956787643
No 4
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=98.34 E-value=0.0003 Score=70.14 Aligned_cols=169 Identities=13% Similarity=0.119 Sum_probs=122.4
Q ss_pred eEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCE
Q 016848 192 LGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGK 271 (381)
Q Consensus 192 G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~ 271 (381)
-..|.+.+|.++.- ..-+....... ....+.-+-|++++||+++++.-..- .....+...+.+.+++||+
T Consensus 182 r~lIi~eegA~v~i--ie~c~~~~~~~-----~~lh~~v~Ei~v~~~A~l~~~~vq~~---~~~~~~~~~~~~~~~~~a~ 251 (429)
T 4dn7_A 182 HNIIIVEEGATLDI--ITGCTTKKGVE-----EGLHLGISEMYIKKGGTLNFTMIHNW---AEQIGVRPRTVVSVEEGGT 251 (429)
T ss_dssp EEEEEECTTCEEEE--EEEEEECTTCC-----EEEEEEEEEEEECTTCEEEEEEEECC---CTEEEEEEEEEEEECTTCE
T ss_pred eEEEEECCCCEEEE--EEEecCCCCcc-----cceEEEEEEEEECCCCEEEEEEEeec---CCCcEEecceeEEECCCcE
Confidence 35788999987641 11122211110 02334456799999999999876532 1245666888999999999
Q ss_pred EEEEEEEecCCCceEEEEEEEE-EcCCcEEEEEEEEe--CCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEE
Q 016848 272 VRHSYLQNQSLNAAHIKWTAVR-QETASGYELVEVST--GGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLL 348 (381)
Q Consensus 272 l~~~~vq~~~~~~~~~~~~~v~-~~~~a~~~~~~~~~--Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~ 348 (381)
+....+...+.... .....+. .+++|..++..+.+ |+........+.+.|+++..++..-.++. +.+.-++-.|.
T Consensus 252 ~~~~~v~~~g~~~~-~~~~~~~L~Ge~A~~~~~~v~l~~g~q~~D~~t~v~H~gp~t~S~i~~k~V~~-~s~~vfrG~I~ 329 (429)
T 4dn7_A 252 YVSNYICLKPVRSV-QTYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITI-GGRLIARGEMI 329 (429)
T ss_dssp EEEEEEECSCCSEE-EECCEEEECSTTCEEEEEEEEEECTTCEEEEEEEEEECSTTCEEEEEEEEEES-SSEEEEEEEEE
T ss_pred EEEEEEEecCceEE-eeeeeEEEecCCcEEEEEEEEecCCceEEEEEEEEEEecCCcEEEEEeeEEEe-ccEEEEeeeEe
Confidence 98877776554433 2222344 46999888887776 56677788899999999999999999999 77777778888
Q ss_pred EecCCcEEEEEEEEEEeCCCeEEE
Q 016848 349 LDHPRGYCRQLHKCIVAHSLGQAV 372 (381)
Q Consensus 349 H~~p~t~S~ql~KgVl~~d~s~~V 372 (381)
..+.+|.+.|.-++++.+|+|+.-
T Consensus 330 ~~A~~t~~~q~~~~LLLsd~A~~~ 353 (429)
T 4dn7_A 330 GNAKGAKGHLECKGLVLTDKGSQL 353 (429)
T ss_dssp ECSTTEEEEEEEEEEECSSSCEEE
T ss_pred cCCcCceeEEEeeeEEecCCceEE
Confidence 889999999999999985668764
No 5
>3sf5_B Urease accessory protein UREH; UREF, chaperone; 2.50A {Helicobacter pylori}
Probab=51.45 E-value=1.4e+02 Score=27.02 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=69.2
Q ss_pred eceEEEEeCCCCEEEEEEEeecC-CCCcceeeeeEEEEEECCCCEEEEEEEEec-CCCceEEEEEEEEEcCCcEEEEEEE
Q 016848 228 NPRVVVLVEEGGEVGIIEEFVGK-EGNDCYWANSVLEVVIGKGGKVRHSYLQNQ-SLNAAHIKWTAVRQETASGYELVEV 305 (381)
Q Consensus 228 ~~r~lI~veega~~~iiE~~~~~-~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~-~~~~~~~~~~~v~~~~~a~~~~~~~ 305 (381)
..++-|.+++||++.|...=... -..........+++.|++||.|+|.=-..- -+++.....+.+.++.+|++-+..+
T Consensus 62 ~l~i~i~v~~ga~~~ltTqaatkvy~~~~~~a~q~~~~~v~~ga~Le~lP~p~I~f~~a~~~~~~~v~L~~~A~l~~~e~ 141 (265)
T 3sf5_B 62 AQDVQLNIGPNCKLRITSQSFEKIHNTEDGFASRDMHIVVGENAFLDFAPFPLIPFENAHFKGNTTISLRSSSQLLYSEI 141 (265)
T ss_dssp EEEEEEEECTTCEEEEECCCCEEECCCTTSCEEEEEEEEECTTCEEEECCCCEEECTTCEEEEEEEEEECTTCEEEEEEE
T ss_pred EEEEEEEECCCCEEEEECcccceEEcCCCCcEEEEEEEEECCCCEEEecCCCcEecCCCEEEEEEEEEECCCCEEEEEEe
Confidence 45778999999999987421100 001123456789999999999999543221 2356677888999999999988887
Q ss_pred EeCCeee--------eEEeEEEEEcCCeEEEEEEEEEecCC
Q 016848 306 STGGKLS--------RHNVHVQQLGPDTETELSSFHLLVSD 338 (381)
Q Consensus 306 ~~Gg~~~--------r~~~~~~L~G~~a~~~l~g~~l~~~~ 338 (381)
..-|+.. +.....++.-+|--.-...+.+..+.
T Consensus 142 ~~~GR~a~GE~f~~g~~~~~~~i~~~g~ll~~d~~~l~~~~ 182 (265)
T 3sf5_B 142 IVAGRVARNELFKFNRLHTKISILQDEKPIYYDNTILDPKT 182 (265)
T ss_dssp EECSCGGGTCCSCSSEEEEEEEEEETTEEEEEEEEEECTTT
T ss_pred eecCcCcCCCCccCCEEEEEEEEEECCEEEEEEeeEECCCc
Confidence 7644442 22222222234445555555555443
No 6
>3sf5_B Urease accessory protein UREH; UREF, chaperone; 2.50A {Helicobacter pylori}
Probab=31.29 E-value=2.9e+02 Score=24.84 Aligned_cols=75 Identities=8% Similarity=0.008 Sum_probs=53.5
Q ss_pred eEEEEEECCCCEEEEEE-----EEecCCCceEEEEEEEEEcCCcEEEEEE---EEeCCeeeeEEeEEEEEcCCeEEE-EE
Q 016848 260 SVLEVVIGKGGKVRHSY-----LQNQSLNAAHIKWTAVRQETASGYELVE---VSTGGKLSRHNVHVQQLGPDTETE-LS 330 (381)
Q Consensus 260 ~v~ei~v~~~A~l~~~~-----vq~~~~~~~~~~~~~v~~~~~a~~~~~~---~~~Gg~~~r~~~~~~L~G~~a~~~-l~ 330 (381)
--.+|.+++||++.... +... .........+++++++|.++|.- +.+.+...+..+.++|. ++|.+- ..
T Consensus 63 l~i~i~v~~ga~~~ltTqaatkvy~~-~~~~a~q~~~~~v~~ga~Le~lP~p~I~f~~a~~~~~~~v~L~-~~A~l~~~e 140 (265)
T 3sf5_B 63 QDVQLNIGPNCKLRITSQSFEKIHNT-EDGFASRDMHIVVGENAFLDFAPFPLIPFENAHFKGNTTISLR-SSSQLLYSE 140 (265)
T ss_dssp EEEEEEECTTCEEEEECCCCEEECCC-TTSCEEEEEEEEECTTCEEEECCCCEEECTTCEEEEEEEEEEC-TTCEEEEEE
T ss_pred EEEEEEECCCCEEEEECcccceEEcC-CCCcEEEEEEEEECCCCEEEecCCCcEecCCCEEEEEEEEEEC-CCCEEEEEE
Confidence 36899999999998854 3332 23344567889999999999974 66777778889999987 455544 44
Q ss_pred EEEEec
Q 016848 331 SFHLLV 336 (381)
Q Consensus 331 g~~l~~ 336 (381)
.+.++.
T Consensus 141 ~~~~GR 146 (265)
T 3sf5_B 141 IIVAGR 146 (265)
T ss_dssp EEECSC
T ss_pred eeecCc
Confidence 444443
No 7
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=13.01 E-value=2.6e+02 Score=18.87 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHHHHhc-CCCCCCCCCCChHHHHHH
Q 016848 43 TFSDPFVIQLAESLEDS-LPSSSSSLPQPLPLQKLR 77 (381)
Q Consensus 43 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~l~~~R 77 (381)
+-.||.+.+..+++++. .+. +..||.++=
T Consensus 4 ~~~D~rl~~al~qMl~MGF~n------egGWLt~LL 33 (52)
T 1q02_A 4 PEADPRLIESLSQMLSMGFSD------EGGWLTRLL 33 (52)
T ss_dssp TTSCHHHHHHHHHHHTTTCCC------TTSHHHHHH
T ss_pred CCcChHHHHHHHHHHHcCCCc------cccHHHHHH
Confidence 44789999988888886 443 677987764
No 8
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=10.22 E-value=38 Score=23.92 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=1.6
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCC
Q 016848 78 DSSSQTLLSTPWPSRKDEPFRFT 100 (381)
Q Consensus 78 ~~a~~~~~~l~~Pt~k~E~WryT 100 (381)
++..+.+++--||+|+ |-|++|
T Consensus 9 ~~v~~ElkKV~WPtr~-e~~~~T 30 (65)
T 3dl8_C 9 KGVRDELKRVVWPSRE-LVVKAT 30 (65)
T ss_dssp --------------------CHH
T ss_pred HHHHHHHhcccCcCHH-HHHHHH
Confidence 3455667788999976 455554
No 9
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=8.43 E-value=2e+02 Score=21.49 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=14.5
Q ss_pred CCeEEEEeCCCcEeeeeEEE
Q 016848 190 PDLGVIYVPAGCKVENPIYL 209 (381)
Q Consensus 190 ~~G~~I~Vp~g~~~~~PI~i 209 (381)
.+|+.+|||+- .+|+||.-
T Consensus 30 ~~GLs~YVpKK-DLEE~VVs 48 (87)
T 2jn4_A 30 ATGHSAYVAKK-DLEELIVE 48 (87)
T ss_dssp SSCEEEEETTT-TEEEEEEE
T ss_pred CCceEEEEeCC-cchhheee
Confidence 45799999995 68888653
No 10
>2ker_A Parvulustat, alpha-amylase inhibitor Z-2685; parvulustat (Z-2685), hydrolase inhibitor; NMR {Streptomyces parvulus}
Probab=7.00 E-value=64 Score=23.45 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=7.4
Q ss_pred CCCCCCCCCc
Q 016848 94 DEPFRFTDTS 103 (381)
Q Consensus 94 ~E~WryT~l~ 103 (381)
.++||||+..
T Consensus 13 ~qsWRYT~v~ 22 (78)
T 2ker_A 13 FQSWRYTDVH 22 (78)
T ss_dssp EECSSEEEEE
T ss_pred ecceEEEeee
Confidence 3689999763
Done!