Query 016849
Match_columns 381
No_of_seqs 429 out of 2705
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:21:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.9 1.1E-21 2.5E-26 152.2 11.3 98 283-380 6-103 (103)
2 KOG0003 Ubiquitin/60s ribosoma 99.9 3.9E-23 8.5E-28 153.2 1.3 76 1-76 1-76 (128)
3 cd01802 AN1_N ubiquitin-like d 99.8 5.3E-20 1.1E-24 142.9 10.3 98 55-152 6-103 (103)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 4.6E-20 1E-24 135.4 8.8 74 305-380 1-74 (74)
5 KOG0004 Ubiquitin/40S ribosoma 99.8 5.7E-21 1.2E-25 153.1 4.2 76 1-76 1-76 (156)
6 cd01807 GDX_N ubiquitin-like d 99.8 7.7E-20 1.7E-24 134.3 7.5 73 1-73 1-73 (74)
7 cd01793 Fubi Fubi ubiquitin-li 99.8 1.4E-19 3E-24 132.9 7.8 73 1-75 1-73 (74)
8 PTZ00044 ubiquitin; Provisiona 99.8 2.2E-19 4.8E-24 132.8 9.0 76 305-380 1-76 (76)
9 cd01810 ISG15_repeat2 ISG15 ub 99.8 4.5E-19 9.9E-24 130.1 8.6 74 307-380 1-74 (74)
10 cd01797 NIRF_N amino-terminal 99.8 3.7E-19 7.9E-24 131.3 7.6 74 1-74 1-76 (78)
11 PTZ00044 ubiquitin; Provisiona 99.8 5.4E-19 1.2E-23 130.7 8.0 75 1-75 1-75 (76)
12 cd01803 Ubiquitin Ubiquitin. U 99.8 1.3E-18 2.9E-23 128.7 8.8 76 305-380 1-76 (76)
13 cd01807 GDX_N ubiquitin-like d 99.8 1.2E-18 2.6E-23 127.9 8.5 74 305-378 1-74 (74)
14 cd01806 Nedd8 Nebb8-like ubiq 99.8 2.6E-18 5.7E-23 127.1 9.3 76 305-380 1-76 (76)
15 KOG0005 Ubiquitin-like protein 99.8 6.2E-19 1.3E-23 116.3 4.2 70 1-70 1-70 (70)
16 cd01810 ISG15_repeat2 ISG15 ub 99.8 2.1E-18 4.6E-23 126.6 7.2 73 3-75 1-73 (74)
17 cd01804 midnolin_N Ubiquitin-l 99.7 5.3E-18 1.1E-22 125.5 8.8 77 304-381 1-77 (78)
18 cd01797 NIRF_N amino-terminal 99.7 8.8E-18 1.9E-22 124.0 8.1 74 305-378 1-76 (78)
19 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 9.8E-18 2.1E-22 121.8 6.8 70 1-70 2-71 (73)
20 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.9E-17 4.1E-22 122.5 8.2 75 1-75 1-75 (76)
21 cd01803 Ubiquitin Ubiquitin. U 99.7 2.1E-17 4.6E-22 122.2 8.0 75 1-75 1-75 (76)
22 cd01798 parkin_N amino-termina 99.7 1.5E-17 3.3E-22 120.7 6.5 70 3-72 1-70 (70)
23 cd01798 parkin_N amino-termina 99.7 2.9E-17 6.3E-22 119.2 7.8 70 307-376 1-70 (70)
24 cd01794 DC_UbP_C dendritic cel 99.7 1.8E-17 3.9E-22 119.6 6.6 68 4-71 2-69 (70)
25 KOG0003 Ubiquitin/60s ribosoma 99.7 1.6E-18 3.4E-23 128.8 0.2 76 305-380 1-76 (128)
26 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 5.3E-17 1.2E-21 117.9 7.9 71 305-375 2-72 (73)
27 cd01804 midnolin_N Ubiquitin-l 99.7 4.9E-17 1.1E-21 120.3 7.1 75 1-76 2-76 (78)
28 cd01763 Sumo Small ubiquitin-r 99.7 3E-16 6.5E-21 118.7 9.9 79 302-380 9-87 (87)
29 cd01805 RAD23_N Ubiquitin-like 99.7 1.5E-16 3.2E-21 118.0 8.0 72 1-72 1-74 (77)
30 cd01794 DC_UbP_C dendritic cel 99.7 1.5E-16 3.2E-21 114.9 7.6 68 308-375 2-69 (70)
31 cd01805 RAD23_N Ubiquitin-like 99.7 2.4E-16 5.3E-21 116.8 8.9 73 305-377 1-75 (77)
32 cd01809 Scythe_N Ubiquitin-lik 99.7 1.5E-16 3.4E-21 116.3 7.4 71 1-71 1-71 (72)
33 cd01800 SF3a120_C Ubiquitin-li 99.7 2E-16 4.3E-21 116.6 7.7 70 312-381 5-74 (76)
34 cd01809 Scythe_N Ubiquitin-lik 99.7 2.9E-16 6.3E-21 114.8 8.4 72 305-376 1-72 (72)
35 KOG0004 Ubiquitin/40S ribosoma 99.7 5.4E-17 1.2E-21 130.3 4.4 77 305-381 1-77 (156)
36 PF00240 ubiquitin: Ubiquitin 99.6 4.8E-16 1E-20 112.6 7.9 69 310-378 1-69 (69)
37 cd01808 hPLIC_N Ubiquitin-like 99.6 5.2E-16 1.1E-20 112.9 7.9 71 305-376 1-71 (71)
38 cd01808 hPLIC_N Ubiquitin-like 99.6 3.8E-16 8.2E-21 113.7 7.2 71 1-72 1-71 (71)
39 cd01792 ISG15_repeat1 ISG15 ub 99.6 2.5E-16 5.5E-21 117.3 6.4 72 1-72 3-76 (80)
40 cd01792 ISG15_repeat1 ISG15 ub 99.6 5.1E-16 1.1E-20 115.6 7.3 72 305-376 3-76 (80)
41 KOG0005 Ubiquitin-like protein 99.6 2.3E-16 5E-21 104.2 3.7 70 77-146 1-70 (70)
42 cd01796 DDI1_N DNA damage indu 99.6 6.3E-16 1.4E-20 112.2 6.0 68 3-70 1-70 (71)
43 cd01796 DDI1_N DNA damage indu 99.6 2.4E-15 5.3E-20 109.1 7.5 68 307-374 1-70 (71)
44 PF00240 ubiquitin: Ubiquitin 99.6 3.2E-15 6.9E-20 108.3 7.3 68 6-73 1-68 (69)
45 cd01800 SF3a120_C Ubiquitin-li 99.6 2.8E-15 6.1E-20 110.5 6.5 68 8-75 5-72 (76)
46 cd01763 Sumo Small ubiquitin-r 99.6 6.6E-15 1.4E-19 111.3 8.4 75 1-75 12-86 (87)
47 cd01790 Herp_N Homocysteine-re 99.6 3.2E-15 7E-20 108.9 6.3 71 1-71 2-78 (79)
48 cd01790 Herp_N Homocysteine-re 99.6 1.3E-14 2.9E-19 105.7 7.2 72 304-375 1-78 (79)
49 cd01812 BAG1_N Ubiquitin-like 99.5 1.7E-14 3.7E-19 105.1 7.3 69 305-374 1-69 (71)
50 cd01812 BAG1_N Ubiquitin-like 99.5 7.4E-14 1.6E-18 101.7 6.6 69 1-70 1-69 (71)
51 cd01799 Hoil1_N Ubiquitin-like 99.5 9E-14 2E-18 101.5 6.8 69 2-71 2-74 (75)
52 cd01813 UBP_N UBP ubiquitin pr 99.5 1.3E-13 2.8E-18 100.6 7.3 68 306-374 2-72 (74)
53 cd01813 UBP_N UBP ubiquitin pr 99.5 1.9E-13 4E-18 99.8 6.8 69 77-146 1-72 (74)
54 smart00213 UBQ Ubiquitin homol 99.4 2.4E-13 5.1E-18 96.8 6.9 64 305-369 1-64 (64)
55 cd01814 NTGP5 Ubiquitin-like N 99.4 1.3E-13 2.8E-18 105.7 4.5 73 2-74 6-92 (113)
56 smart00213 UBQ Ubiquitin homol 99.4 4.3E-13 9.3E-18 95.4 6.6 64 1-65 1-64 (64)
57 cd01799 Hoil1_N Ubiquitin-like 99.4 6.1E-13 1.3E-17 97.1 7.3 64 311-375 9-74 (75)
58 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 1.5E-13 3.3E-18 98.7 4.0 55 17-71 16-74 (75)
59 TIGR00601 rad23 UV excision re 99.4 9.3E-13 2E-17 125.0 7.5 72 1-72 1-75 (378)
60 cd01814 NTGP5 Ubiquitin-like N 99.3 8.8E-13 1.9E-17 101.1 4.6 77 75-151 3-93 (113)
61 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 1.1E-12 2.4E-17 94.2 4.8 55 321-375 16-74 (75)
62 TIGR00601 rad23 UV excision re 99.3 3E-12 6.5E-17 121.6 8.5 72 305-376 1-75 (378)
63 PF11976 Rad60-SLD: Ubiquitin- 99.3 2E-11 4.4E-16 89.0 7.9 71 305-375 1-72 (72)
64 cd01769 UBL Ubiquitin-like dom 99.3 2.3E-11 5E-16 87.8 7.6 67 309-375 2-68 (69)
65 cd01795 USP48_C USP ubiquitin- 99.2 4.1E-11 8.8E-16 89.0 6.6 61 316-376 16-77 (107)
66 cd01795 USP48_C USP ubiquitin- 99.2 4.3E-11 9.3E-16 88.9 6.2 62 164-225 16-78 (107)
67 KOG0010 Ubiquitin-like protein 99.2 4.2E-11 9.1E-16 113.8 6.6 73 304-377 15-87 (493)
68 cd01769 UBL Ubiquitin-like dom 99.1 1.1E-10 2.4E-15 84.2 6.7 67 81-147 2-68 (69)
69 KOG0010 Ubiquitin-like protein 99.1 5.1E-11 1.1E-15 113.2 6.0 73 76-149 15-87 (493)
70 KOG0001 Ubiquitin and ubiquiti 99.1 2.5E-10 5.4E-15 83.1 7.9 73 2-74 1-73 (75)
71 PF11976 Rad60-SLD: Ubiquitin- 99.1 2.5E-10 5.4E-15 83.2 7.8 71 77-147 1-72 (72)
72 KOG0011 Nucleotide excision re 99.1 1.1E-10 2.4E-15 105.4 6.6 72 1-72 1-74 (340)
73 KOG0011 Nucleotide excision re 99.0 2.9E-10 6.4E-15 102.7 6.5 74 77-150 1-76 (340)
74 KOG0001 Ubiquitin and ubiquiti 99.0 3.2E-09 7E-14 77.2 9.5 74 307-380 2-75 (75)
75 cd01788 ElonginB Ubiquitin-lik 99.0 1.7E-09 3.8E-14 82.5 7.5 63 315-377 12-81 (119)
76 cd01789 Alp11_N Ubiquitin-like 99.0 3.5E-09 7.6E-14 79.3 8.5 68 307-374 4-79 (84)
77 PF14560 Ubiquitin_2: Ubiquiti 98.8 1.2E-08 2.6E-13 77.2 7.8 69 306-374 3-81 (87)
78 cd01789 Alp11_N Ubiquitin-like 98.8 2.5E-08 5.4E-13 74.7 7.8 70 78-147 3-80 (84)
79 KOG1769 Ubiquitin-like protein 98.8 1E-07 2.2E-12 71.3 10.2 77 305-381 21-97 (99)
80 PLN02560 enoyl-CoA reductase 98.7 2.1E-08 4.5E-13 93.3 7.1 69 1-69 1-80 (308)
81 PF13881 Rad60-SLD_2: Ubiquiti 98.7 8.5E-08 1.9E-12 75.2 9.1 75 76-150 2-90 (111)
82 cd01788 ElonginB Ubiquitin-lik 98.7 3.2E-08 6.9E-13 75.7 6.3 72 1-72 1-80 (119)
83 PLN02560 enoyl-CoA reductase 98.7 3.8E-08 8.3E-13 91.5 7.5 69 305-373 1-80 (308)
84 KOG4248 Ubiquitin-like protein 98.6 4.2E-08 9E-13 100.6 5.9 74 77-151 3-76 (1143)
85 PF11543 UN_NPL4: Nuclear pore 98.6 6.9E-08 1.5E-12 71.2 4.8 71 303-374 3-78 (80)
86 PF14560 Ubiquitin_2: Ubiquiti 98.6 2.8E-07 6E-12 69.7 8.2 70 78-147 3-82 (87)
87 KOG4248 Ubiquitin-like protein 98.6 6.5E-08 1.4E-12 99.2 5.6 72 2-74 4-75 (1143)
88 PF13881 Rad60-SLD_2: Ubiquiti 98.6 4.3E-07 9.2E-12 71.3 8.7 73 306-378 4-90 (111)
89 cd01811 OASL_repeat1 2'-5' oli 98.5 4.6E-07 9.9E-12 63.6 7.4 73 153-226 1-78 (80)
90 cd01801 Tsc13_N Ubiquitin-like 98.5 3.2E-07 7E-12 67.6 6.0 52 322-373 20-74 (77)
91 cd01811 OASL_repeat1 2'-5' oli 98.5 7.2E-07 1.6E-11 62.6 6.7 70 77-147 1-75 (80)
92 cd00196 UBQ Ubiquitin-like pro 98.3 2.4E-06 5.3E-11 59.4 7.5 64 312-375 5-68 (69)
93 cd01801 Tsc13_N Ubiquitin-like 98.3 1.4E-06 3.1E-11 64.1 5.7 52 94-145 20-74 (77)
94 COG5227 SMT3 Ubiquitin-like pr 98.2 2.7E-06 5.9E-11 61.9 4.2 78 304-381 24-101 (103)
95 PF11543 UN_NPL4: Nuclear pore 98.1 6.2E-06 1.3E-10 60.9 5.1 69 1-70 5-78 (80)
96 KOG3493 Ubiquitin-like protein 98.1 1.3E-06 2.8E-11 59.4 1.3 69 306-374 3-71 (73)
97 cd00196 UBQ Ubiquitin-like pro 98.1 1.2E-05 2.7E-10 55.7 6.4 66 6-71 3-68 (69)
98 KOG1769 Ubiquitin-like protein 97.9 8.2E-05 1.8E-09 55.9 8.9 76 153-228 21-96 (99)
99 KOG3493 Ubiquitin-like protein 97.9 5E-06 1.1E-10 56.5 1.6 70 77-146 2-71 (73)
100 KOG0006 E3 ubiquitin-protein l 97.9 2.1E-05 4.4E-10 70.9 5.9 63 87-149 14-77 (446)
101 KOG0006 E3 ubiquitin-protein l 97.9 2.1E-05 4.6E-10 70.9 5.6 70 305-374 1-73 (446)
102 KOG4495 RNA polymerase II tran 97.9 3E-05 6.5E-10 57.2 5.0 59 315-373 12-79 (110)
103 PF13019 Telomere_Sde2: Telome 97.7 0.00016 3.6E-09 59.9 8.0 76 305-380 1-88 (162)
104 PF11470 TUG-UBL1: GLUT4 regul 97.7 0.00011 2.3E-09 51.7 5.2 63 235-297 3-65 (65)
105 KOG4495 RNA polymerase II tran 97.6 7.4E-05 1.6E-09 55.2 4.3 61 1-61 1-64 (110)
106 PF11470 TUG-UBL1: GLUT4 regul 97.6 0.00017 3.7E-09 50.7 5.9 63 311-373 3-65 (65)
107 KOG1872 Ubiquitin-specific pro 97.4 0.00033 7.3E-09 67.0 6.2 71 78-149 5-76 (473)
108 KOG1872 Ubiquitin-specific pro 97.4 0.00041 8.9E-09 66.4 6.6 68 307-375 6-74 (473)
109 PF08817 YukD: WXG100 protein 97.3 0.00076 1.6E-08 49.8 5.7 68 306-373 4-78 (79)
110 PF00789 UBX: UBX domain; Int 97.1 0.0044 9.5E-08 46.0 8.4 71 304-374 6-81 (82)
111 PF08817 YukD: WXG100 protein 97.0 0.0027 5.8E-08 46.8 6.5 69 77-145 3-78 (79)
112 PF13019 Telomere_Sde2: Telome 97.0 0.0035 7.6E-08 52.1 7.5 64 1-64 1-72 (162)
113 PF00789 UBX: UBX domain; Int 96.8 0.0097 2.1E-07 44.1 8.3 72 75-146 5-81 (82)
114 PF10302 DUF2407: DUF2407 ubiq 96.7 0.0034 7.4E-08 48.0 5.4 57 79-135 3-64 (97)
115 smart00166 UBX Domain present 96.5 0.014 3E-07 43.1 7.4 71 75-145 3-78 (80)
116 smart00166 UBX Domain present 96.5 0.015 3.1E-07 43.0 7.5 71 304-374 4-79 (80)
117 cd01767 UBX UBX (ubiquitin reg 96.3 0.027 5.9E-07 41.1 7.8 68 305-374 3-75 (77)
118 COG5417 Uncharacterized small 96.2 0.035 7.7E-07 39.3 7.4 66 308-373 10-80 (81)
119 cd01770 p47_UBX p47-like ubiqu 96.2 0.028 6.1E-07 41.3 7.3 67 304-370 4-74 (79)
120 PF10302 DUF2407: DUF2407 ubiq 96.2 0.012 2.6E-07 45.0 5.3 50 163-212 12-65 (97)
121 cd01774 Faf1_like2_UBX Faf1 ik 96.1 0.047 1E-06 40.7 8.0 70 304-374 4-83 (85)
122 KOG0013 Uncharacterized conser 96.0 0.011 2.4E-07 50.7 4.9 64 313-376 155-218 (231)
123 COG5227 SMT3 Ubiquitin-like pr 96.0 0.04 8.6E-07 40.5 7.0 71 76-146 24-94 (103)
124 cd01767 UBX UBX (ubiquitin reg 96.0 0.052 1.1E-06 39.7 7.8 67 77-145 3-74 (77)
125 cd01772 SAKS1_UBX SAKS1-like U 96.0 0.051 1.1E-06 40.0 7.7 69 305-374 5-78 (79)
126 KOG1639 Steroid reductase requ 95.8 0.015 3.2E-07 51.2 5.0 69 305-373 1-76 (297)
127 cd01772 SAKS1_UBX SAKS1-like U 95.8 0.059 1.3E-06 39.6 7.5 69 76-145 4-77 (79)
128 cd01770 p47_UBX p47-like ubiqu 95.8 0.056 1.2E-06 39.7 7.2 66 76-141 4-73 (79)
129 KOG0013 Uncharacterized conser 95.6 0.02 4.4E-07 49.1 4.7 61 85-145 155-215 (231)
130 cd01773 Faf1_like1_UBX Faf1 ik 95.5 0.13 2.8E-06 37.9 8.1 73 303-376 4-81 (82)
131 cd01774 Faf1_like2_UBX Faf1 ik 95.4 0.11 2.5E-06 38.7 7.8 70 75-145 3-82 (85)
132 PRK06437 hypothetical protein; 95.4 0.14 3E-06 36.3 7.9 59 313-380 9-67 (67)
133 PF12436 USP7_ICP0_bdg: ICP0-b 95.2 0.13 2.7E-06 46.9 8.9 107 243-349 89-224 (249)
134 cd01771 Faf1_UBX Faf1 UBX doma 95.1 0.17 3.7E-06 37.2 7.7 71 304-375 4-79 (80)
135 PF14533 USP7_C2: Ubiquitin-sp 95.0 0.27 5.9E-06 43.6 10.3 124 239-364 34-194 (213)
136 COG5417 Uncharacterized small 95.0 0.16 3.5E-06 36.1 6.8 68 154-221 8-80 (81)
137 cd01773 Faf1_like1_UBX Faf1 ik 94.5 0.3 6.6E-06 36.0 7.7 69 77-146 6-79 (82)
138 PF15044 CLU_N: Mitochondrial 94.4 0.076 1.6E-06 38.7 4.3 56 321-376 1-58 (76)
139 cd00754 MoaD Ubiquitin domain 94.3 0.19 4.1E-06 36.7 6.5 60 316-380 17-80 (80)
140 PF12436 USP7_ICP0_bdg: ICP0-b 94.3 0.33 7.2E-06 44.1 9.3 122 76-197 68-224 (249)
141 PF09379 FERM_N: FERM N-termin 94.3 0.28 6.1E-06 35.8 7.4 68 309-376 1-77 (80)
142 PF14533 USP7_C2: Ubiquitin-sp 94.2 0.43 9.4E-06 42.3 9.7 103 87-191 34-161 (213)
143 cd01771 Faf1_UBX Faf1 UBX doma 94.2 0.37 8E-06 35.5 7.7 70 76-146 4-78 (80)
144 PRK08364 sulfur carrier protei 94.0 0.59 1.3E-05 33.4 8.3 66 305-380 5-70 (70)
145 KOG3206 Alpha-tubulin folding 93.7 0.17 3.6E-06 43.5 5.7 58 317-374 15-79 (234)
146 PLN02799 Molybdopterin synthas 93.7 0.28 6.1E-06 36.2 6.5 71 305-380 2-82 (82)
147 PRK06488 sulfur carrier protei 93.7 0.44 9.5E-06 33.4 7.1 61 312-380 5-65 (65)
148 PF14453 ThiS-like: ThiS-like 93.4 0.31 6.7E-06 33.2 5.5 56 305-376 1-56 (57)
149 PF09379 FERM_N: FERM N-termin 93.2 0.46 9.9E-06 34.7 6.9 62 233-294 1-69 (80)
150 PF11620 GABP-alpha: GA-bindin 93.0 0.76 1.6E-05 33.7 7.3 59 240-298 4-62 (88)
151 PF15044 CLU_N: Mitochondrial 93.0 0.12 2.7E-06 37.6 3.4 57 245-301 1-59 (76)
152 KOG1639 Steroid reductase requ 92.8 0.15 3.3E-06 45.1 4.3 70 77-146 1-77 (297)
153 PF10790 DUF2604: Protein of U 92.5 0.69 1.5E-05 31.8 6.2 66 313-378 4-73 (76)
154 cd06409 PB1_MUG70 The MUG70 pr 92.2 0.44 9.6E-06 35.5 5.4 43 307-349 3-48 (86)
155 cd01760 RBD Ubiquitin-like dom 91.9 0.41 9E-06 34.4 4.9 45 307-351 2-46 (72)
156 smart00455 RBD Raf-like Ras-bi 91.8 0.46 1E-05 34.0 5.1 48 308-355 3-52 (70)
157 PF12754 Blt1: Cell-cycle cont 91.8 0.048 1.1E-06 50.0 0.0 57 324-380 103-181 (309)
158 TIGR03028 EpsE polysaccharide 91.8 9.6 0.00021 34.4 19.6 212 134-375 1-236 (239)
159 PF11620 GABP-alpha: GA-bindin 91.7 0.87 1.9E-05 33.4 6.3 61 316-376 4-64 (88)
160 cd06406 PB1_P67 A PB1 domain i 91.6 0.96 2.1E-05 33.1 6.5 37 316-352 12-48 (80)
161 PRK06437 hypothetical protein; 91.4 1.6 3.4E-05 30.9 7.5 57 160-225 8-64 (67)
162 PRK06944 sulfur carrier protei 91.4 1.6 3.6E-05 30.4 7.6 60 313-380 6-65 (65)
163 TIGR01682 moaD molybdopterin c 91.3 1.2 2.7E-05 32.5 7.1 59 317-380 18-80 (80)
164 TIGR01683 thiS thiamine biosyn 90.5 1.3 2.9E-05 30.8 6.3 62 312-380 3-64 (64)
165 cd00565 ThiS ThiaminS ubiquiti 90.4 1.2 2.5E-05 31.3 6.0 61 313-380 5-65 (65)
166 PRK05863 sulfur carrier protei 90.3 1.4 3E-05 31.0 6.3 61 312-380 5-65 (65)
167 PRK05659 sulfur carrier protei 90.3 2.3 4.9E-05 29.8 7.4 62 312-380 5-66 (66)
168 PF02597 ThiS: ThiS family; I 90.1 1.1 2.5E-05 32.2 6.0 65 313-380 11-77 (77)
169 PRK08053 sulfur carrier protei 90.1 2.5 5.3E-05 29.7 7.4 61 313-380 6-66 (66)
170 PRK07440 hypothetical protein; 89.8 2.5 5.3E-05 30.2 7.3 67 304-380 4-70 (70)
171 PF10790 DUF2604: Protein of U 89.7 1.1 2.4E-05 30.9 5.0 64 237-300 4-71 (76)
172 TIGR01687 moaD_arch MoaD famil 89.6 2.9 6.2E-05 31.1 8.0 61 316-380 17-88 (88)
173 smart00455 RBD Raf-like Ras-bi 89.2 1.2 2.6E-05 31.8 5.3 45 3-47 2-46 (70)
174 cd06406 PB1_P67 A PB1 domain i 88.9 2.1 4.5E-05 31.3 6.3 38 88-125 12-49 (80)
175 cd06407 PB1_NLP A PB1 domain i 88.7 1.9 4.2E-05 31.8 6.2 65 312-376 7-81 (82)
176 PF14836 Ubiquitin_3: Ubiquiti 88.7 3.1 6.6E-05 31.1 7.2 62 87-149 14-81 (88)
177 KOG4598 Putative ubiquitin-spe 88.4 1.4 2.9E-05 45.0 6.8 181 164-348 878-1105(1203)
178 cd01760 RBD Ubiquitin-like dom 88.3 1.3 2.8E-05 31.8 4.9 46 3-48 2-47 (72)
179 KOG3206 Alpha-tubulin folding 88.1 2.2 4.8E-05 36.9 7.0 92 89-183 15-120 (234)
180 smart00666 PB1 PB1 domain. Pho 88.0 2.2 4.9E-05 31.1 6.3 43 307-350 4-46 (81)
181 PRK06083 sulfur carrier protei 87.7 3.1 6.7E-05 30.9 6.8 66 305-380 19-84 (84)
182 KOG4583 Membrane-associated ER 87.6 0.27 5.9E-06 45.4 1.4 71 76-146 9-85 (391)
183 PF02196 RBD: Raf-like Ras-bin 87.5 1.8 3.9E-05 31.0 5.3 51 307-357 3-55 (71)
184 smart00295 B41 Band 4.1 homolo 87.5 5.2 0.00011 34.7 9.5 73 304-376 3-83 (207)
185 PRK07696 sulfur carrier protei 86.7 4.8 0.0001 28.4 7.1 62 312-380 5-67 (67)
186 cd06409 PB1_MUG70 The MUG70 pr 86.7 2 4.3E-05 32.0 5.3 43 155-197 3-48 (86)
187 PF14836 Ubiquitin_3: Ubiquiti 85.6 7.3 0.00016 29.1 7.7 62 316-378 15-82 (88)
188 COG2104 ThiS Sulfur transfer p 85.0 7.8 0.00017 27.5 7.4 59 317-380 10-68 (68)
189 cd01818 TIAM1_RBD Ubiquitin do 84.4 2.4 5.3E-05 30.5 4.5 49 232-280 3-51 (77)
190 cd00754 MoaD Ubiquitin domain 84.4 4 8.8E-05 29.5 6.1 59 164-227 17-79 (80)
191 KOG2982 Uncharacterized conser 83.2 2.1 4.5E-05 39.7 4.8 57 318-374 351-415 (418)
192 PF14453 ThiS-like: ThiS-like 82.1 4.1 9E-05 27.7 4.8 47 1-58 1-47 (57)
193 PRK06488 sulfur carrier protei 82.1 8.6 0.00019 26.7 6.8 58 161-226 6-63 (65)
194 PRK11130 moaD molybdopterin sy 81.7 9.2 0.0002 28.0 7.1 58 318-380 18-81 (81)
195 KOG0012 DNA damage inducible p 81.0 2.4 5.1E-05 39.9 4.4 62 313-374 11-74 (380)
196 smart00666 PB1 PB1 domain. Pho 80.6 8.8 0.00019 27.8 6.7 45 78-123 3-47 (81)
197 PF02196 RBD: Raf-like Ras-bin 80.4 6.4 0.00014 28.1 5.6 45 3-47 3-47 (71)
198 KOG4261 Talin [Cytoskeleton] 80.2 2.1 4.6E-05 44.1 4.1 99 240-341 14-121 (1003)
199 cd06407 PB1_NLP A PB1 domain i 79.4 7.3 0.00016 28.8 5.8 41 160-200 7-48 (82)
200 cd01818 TIAM1_RBD Ubiquitin do 79.4 6.4 0.00014 28.4 5.1 42 308-349 3-44 (77)
201 PRK08364 sulfur carrier protei 79.3 17 0.00036 25.8 7.5 52 164-224 15-66 (70)
202 PF00564 PB1: PB1 domain; Int 79.2 9.2 0.0002 27.9 6.5 38 312-349 8-46 (84)
203 KOG2086 Protein tyrosine phosp 78.4 5 0.00011 38.2 5.7 69 303-371 304-376 (380)
204 cd01817 RGS12_RBD Ubiquitin do 78.4 15 0.00032 26.4 6.8 46 310-355 5-52 (73)
205 KOG4583 Membrane-associated ER 77.7 1 2.2E-05 41.7 1.0 60 304-363 9-72 (391)
206 cd06408 PB1_NoxR The PB1 domai 77.4 12 0.00027 27.8 6.4 45 306-352 4-48 (86)
207 PF02597 ThiS: ThiS family; I 77.1 6.2 0.00013 28.2 4.9 59 240-300 13-73 (77)
208 KOG0012 DNA damage inducible p 76.7 4 8.7E-05 38.4 4.5 68 161-228 11-80 (380)
209 smart00295 B41 Band 4.1 homolo 75.9 15 0.00033 31.7 8.0 38 2-39 5-42 (207)
210 KOG4250 TANK binding protein k 75.3 5.9 0.00013 40.8 5.6 46 6-51 320-365 (732)
211 KOG2086 Protein tyrosine phosp 75.3 5 0.00011 38.2 4.8 67 77-143 306-376 (380)
212 PLN02799 Molybdopterin synthas 75.1 11 0.00024 27.5 5.9 58 163-225 19-79 (82)
213 cd06408 PB1_NoxR The PB1 domai 74.8 17 0.00038 27.0 6.6 46 77-124 3-48 (86)
214 TIGR02958 sec_mycoba_snm4 secr 74.7 12 0.00026 37.2 7.7 70 307-377 5-81 (452)
215 cd01777 SNX27_RA Ubiquitin dom 74.6 7.7 0.00017 28.9 4.7 41 2-42 3-43 (87)
216 cd06396 PB1_NBR1 The PB1 domai 74.3 12 0.00027 27.5 5.6 37 311-349 6-44 (81)
217 cd06410 PB1_UP2 Uncharacterize 73.7 12 0.00026 28.6 5.7 40 309-349 17-56 (97)
218 cd01768 RA RA (Ras-associating 73.5 30 0.00066 25.4 8.0 36 313-348 11-48 (87)
219 cd05992 PB1 The PB1 domain is 73.4 12 0.00026 27.0 5.7 38 313-350 8-46 (81)
220 cd06411 PB1_p51 The PB1 domain 73.1 7.3 0.00016 28.3 4.2 35 316-350 8-42 (78)
221 PF12754 Blt1: Cell-cycle cont 72.6 1.2 2.5E-05 41.2 0.0 63 75-137 77-159 (309)
222 PF08337 Plexin_cytopl: Plexin 71.4 4 8.6E-05 41.1 3.4 65 9-73 200-290 (539)
223 PRK11840 bifunctional sulfur c 71.2 18 0.00038 34.1 7.3 63 312-381 5-67 (326)
224 cd01775 CYR1_RA Ubiquitin doma 71.1 20 0.00044 27.2 6.3 37 306-342 4-40 (97)
225 TIGR01687 moaD_arch MoaD famil 71.1 23 0.0005 26.1 6.8 61 163-227 16-87 (88)
226 TIGR01682 moaD molybdopterin c 71.1 23 0.0005 25.7 6.7 58 164-226 17-78 (80)
227 COG5100 NPL4 Nuclear pore prot 69.3 19 0.00042 34.5 7.1 70 305-375 1-78 (571)
228 PF14732 UAE_UbL: Ubiquitin/SU 68.9 9 0.0002 28.6 4.1 56 319-374 2-67 (87)
229 TIGR03028 EpsE polysaccharide 68.1 91 0.002 28.0 14.7 140 210-374 1-160 (239)
230 KOG4261 Talin [Cytoskeleton] 66.4 14 0.0003 38.5 6.0 99 164-265 14-121 (1003)
231 KOG4250 TANK binding protein k 66.2 14 0.0003 38.3 5.9 44 83-126 321-364 (732)
232 cd00565 ThiS ThiaminS ubiquiti 66.1 27 0.00059 24.2 5.9 60 161-227 5-64 (65)
233 smart00144 PI3K_rbd PI3-kinase 65.9 40 0.00086 26.2 7.4 63 10-72 28-104 (108)
234 PF00564 PB1: PB1 domain; Int 65.0 29 0.00064 25.1 6.3 34 90-123 15-48 (84)
235 cd01777 SNX27_RA Ubiquitin dom 64.8 13 0.00028 27.7 4.1 41 306-346 3-43 (87)
236 PF14451 Ub-Mut7C: Mut7-C ubiq 64.6 17 0.00037 26.7 4.8 54 238-300 22-76 (81)
237 PRK05863 sulfur carrier protei 64.6 39 0.00085 23.5 6.5 56 161-224 6-61 (65)
238 smart00144 PI3K_rbd PI3-kinase 64.5 45 0.00097 25.9 7.4 64 314-377 28-105 (108)
239 cd06398 PB1_Joka2 The PB1 doma 64.5 25 0.00054 26.5 5.7 66 312-377 7-88 (91)
240 PF00788 RA: Ras association ( 64.4 23 0.00049 26.1 5.7 52 307-358 5-68 (93)
241 cd01817 RGS12_RBD Ubiquitin do 64.3 21 0.00046 25.6 5.0 44 5-48 4-47 (73)
242 KOG4598 Putative ubiquitin-spe 64.0 16 0.00035 37.6 5.9 205 88-297 878-1136(1203)
243 PF10209 DUF2340: Uncharacteri 63.8 14 0.00031 29.3 4.4 56 169-224 22-108 (122)
244 PF02017 CIDE-N: CIDE-N domain 63.6 20 0.00043 26.2 4.8 49 325-376 21-71 (78)
245 PF14451 Ub-Mut7C: Mut7-C ubiq 63.5 31 0.00066 25.4 5.9 53 314-375 22-75 (81)
246 cd01764 Urm1 Urm1-like ubuitin 63.3 16 0.00034 27.7 4.5 60 319-380 23-94 (94)
247 cd01787 GRB7_RA RA (RAS-associ 63.1 41 0.0009 24.9 6.5 56 306-361 4-66 (85)
248 PRK08453 fliD flagellar cappin 63.0 40 0.00087 35.2 8.7 103 235-338 134-261 (673)
249 PF08337 Plexin_cytopl: Plexin 62.8 15 0.00032 37.1 5.4 64 314-377 201-290 (539)
250 PTZ00380 microtubule-associate 62.6 13 0.00029 29.5 4.1 48 315-362 41-88 (121)
251 PRK05659 sulfur carrier protei 62.3 17 0.00038 25.1 4.4 57 236-299 5-61 (66)
252 PF14847 Ras_bdg_2: Ras-bindin 62.3 24 0.00052 27.4 5.4 36 3-38 3-38 (105)
253 cd01768 RA RA (Ras-associating 61.6 61 0.0013 23.7 7.6 44 2-45 3-48 (87)
254 TIGR02958 sec_mycoba_snm4 secr 61.5 22 0.00048 35.3 6.4 64 238-301 11-81 (452)
255 TIGR01683 thiS thiamine biosyn 61.3 40 0.00086 23.2 6.0 59 161-226 4-62 (64)
256 KOG2982 Uncharacterized conser 60.8 13 0.00029 34.6 4.3 56 167-222 352-415 (418)
257 KOG4572 Predicted DNA-binding 60.8 12 0.00026 39.1 4.4 52 313-364 3-56 (1424)
258 PRK01777 hypothetical protein; 60.5 73 0.0016 24.2 7.9 65 304-377 3-77 (95)
259 PF10209 DUF2340: Uncharacteri 59.2 23 0.00051 28.1 4.9 55 93-147 22-107 (122)
260 PF02505 MCR_D: Methyl-coenzym 58.9 94 0.002 25.7 8.4 109 13-135 6-120 (153)
261 PTZ00380 microtubule-associate 57.4 36 0.00077 27.1 5.7 75 73-147 24-104 (121)
262 cd06410 PB1_UP2 Uncharacterize 57.1 31 0.00068 26.3 5.2 40 5-45 17-56 (97)
263 PF14732 UAE_UbL: Ubiquitin/SU 56.7 40 0.00087 25.1 5.6 55 172-226 8-71 (87)
264 PRK06083 sulfur carrier protei 56.4 64 0.0014 23.9 6.6 58 161-225 24-81 (84)
265 cd01615 CIDE_N CIDE_N domain, 56.1 29 0.00063 25.3 4.6 38 325-362 21-60 (78)
266 cd01764 Urm1 Urm1-like ubuitin 55.8 17 0.00037 27.5 3.6 58 167-226 23-92 (94)
267 cd06396 PB1_NBR1 The PB1 domai 55.7 44 0.00095 24.6 5.5 31 83-113 6-38 (81)
268 smart00266 CAD Domains present 55.6 25 0.00055 25.3 4.1 38 325-362 19-58 (74)
269 cd05992 PB1 The PB1 domain is 55.3 48 0.001 23.7 5.9 37 86-122 9-46 (81)
270 PRK08053 sulfur carrier protei 54.9 69 0.0015 22.2 6.9 59 161-226 6-64 (66)
271 cd06411 PB1_p51 The PB1 domain 54.7 30 0.00066 25.2 4.5 36 88-123 8-43 (78)
272 smart00314 RA Ras association 53.9 49 0.0011 24.4 5.9 46 312-357 13-65 (90)
273 PF14847 Ras_bdg_2: Ras-bindin 53.8 32 0.0007 26.7 4.8 36 307-342 3-38 (105)
274 PF08825 E2_bind: E2 binding d 52.5 25 0.00055 26.0 3.9 55 319-374 1-69 (84)
275 smart00314 RA Ras association 52.1 40 0.00086 24.9 5.1 38 2-39 6-44 (90)
276 PF11069 DUF2870: Protein of u 51.4 13 0.00027 28.3 2.1 23 118-141 3-25 (98)
277 PRK15078 polysaccharide export 51.1 2.4E+02 0.0052 27.4 18.3 175 132-337 82-288 (379)
278 KOG3439 Protein conjugation fa 50.9 62 0.0013 25.2 5.8 38 89-126 47-84 (116)
279 PF11834 DUF3354: Domain of un 50.9 21 0.00046 25.4 3.1 43 325-373 26-68 (69)
280 PF02991 Atg8: Autophagy prote 50.6 30 0.00066 26.8 4.2 44 320-363 38-82 (104)
281 PF11069 DUF2870: Protein of u 48.8 16 0.00035 27.7 2.4 27 42-69 3-29 (98)
282 KOG0007 Splicing factor 3a, su 48.7 7.8 0.00017 37.0 0.9 51 311-361 289-340 (341)
283 cd06397 PB1_UP1 Uncharacterize 48.5 46 0.00099 24.4 4.5 39 311-349 6-44 (82)
284 PF00794 PI3K_rbd: PI3-kinase 47.9 87 0.0019 24.0 6.6 71 305-375 17-101 (106)
285 PF00794 PI3K_rbd: PI3-kinase 47.8 1.3E+02 0.0027 23.1 7.8 72 76-147 16-101 (106)
286 TIGR03027 pepcterm_export puta 47.1 1.7E+02 0.0037 24.5 10.8 139 211-374 1-161 (165)
287 PF08825 E2_bind: E2 binding d 46.6 73 0.0016 23.6 5.6 56 91-147 1-70 (84)
288 KOG2689 Predicted ubiquitin re 46.5 37 0.00081 30.9 4.7 70 229-298 211-285 (290)
289 PF06234 TmoB: Toluene-4-monoo 45.7 1.2E+02 0.0027 22.4 6.6 61 316-376 16-84 (85)
290 PRK07440 hypothetical protein; 45.3 46 0.00099 23.6 4.2 57 236-299 9-65 (70)
291 PRK05738 rplW 50S ribosomal pr 44.9 38 0.00082 25.6 3.9 39 314-352 20-59 (92)
292 cd01611 GABARAP Ubiquitin doma 44.8 34 0.00075 26.8 3.8 59 318-376 44-106 (112)
293 COG2104 ThiS Sulfur transfer p 44.2 54 0.0012 23.2 4.4 51 243-298 12-62 (68)
294 cd06539 CIDE_N_A CIDE_N domain 44.1 55 0.0012 23.9 4.4 38 325-362 21-60 (78)
295 TIGR03636 L23_arch archaeal ri 42.4 43 0.00093 24.4 3.7 35 314-348 14-48 (77)
296 cd06536 CIDE_N_ICAD CIDE_N dom 42.0 46 0.00099 24.4 3.8 38 325-362 21-62 (80)
297 KOG4572 Predicted DNA-binding 41.8 36 0.00078 35.8 4.3 63 161-223 3-69 (1424)
298 KOG0007 Splicing factor 3a, su 41.0 12 0.00026 35.8 0.8 50 83-132 289-339 (341)
299 KOG3439 Protein conjugation fa 40.8 55 0.0012 25.5 4.2 38 315-352 45-82 (116)
300 cd01787 GRB7_RA RA (RAS-associ 40.5 1E+02 0.0023 22.8 5.5 57 78-134 4-67 (85)
301 PF02505 MCR_D: Methyl-coenzym 40.5 2.1E+02 0.0046 23.7 8.5 107 169-287 10-120 (153)
302 PF08783 DWNN: DWNN domain; I 40.2 1.4E+02 0.003 21.5 6.2 32 15-46 14-48 (74)
303 cd06538 CIDE_N_FSP27 CIDE_N do 39.3 56 0.0012 23.9 3.9 38 325-362 21-59 (79)
304 PF10407 Cytokin_check_N: Cdc1 38.6 1.1E+02 0.0023 22.1 5.2 61 315-376 3-70 (73)
305 TIGR00038 efp translation elon 38.5 33 0.00072 29.6 3.1 87 2-95 37-126 (184)
306 PF00276 Ribosomal_L23: Riboso 38.4 36 0.00078 25.6 2.9 41 314-354 20-61 (91)
307 PRK14548 50S ribosomal protein 37.6 55 0.0012 24.2 3.7 35 314-348 21-55 (84)
308 PF00788 RA: Ras association ( 37.2 1.3E+02 0.0028 21.9 6.0 25 12-36 18-42 (93)
309 KOG2689 Predicted ubiquitin re 36.3 97 0.0021 28.4 5.7 71 75-145 209-284 (290)
310 cd01782 AF6_RA_repeat1 Ubiquit 36.3 90 0.0019 24.3 4.7 37 1-37 24-62 (112)
311 TIGR03260 met_CoM_red_D methyl 36.1 2.5E+02 0.0054 23.2 8.4 107 15-135 7-118 (150)
312 cd01816 Raf_RBD Ubiquitin doma 36.1 1.3E+02 0.0028 21.6 5.2 43 308-350 3-45 (74)
313 PRK12426 elongation factor P; 35.6 25 0.00055 30.3 1.9 86 3-95 39-127 (185)
314 PF03671 Ufm1: Ubiquitin fold 34.8 1.7E+02 0.0036 21.0 5.4 58 316-373 17-75 (76)
315 COG1977 MoaD Molybdopterin con 33.4 1.1E+02 0.0024 22.4 4.9 56 321-380 24-84 (84)
316 cd01766 Ufm1 Urm1-like ubiquit 33.3 1.8E+02 0.0038 20.9 5.4 63 317-379 18-81 (82)
317 PF06234 TmoB: Toluene-4-monoo 33.2 2E+02 0.0044 21.3 6.1 60 165-224 17-84 (85)
318 cd01666 TGS_DRG_C TGS_DRG_C: 32.7 83 0.0018 22.7 3.9 58 240-298 16-74 (75)
319 PF02824 TGS: TGS domain; Int 32.7 1.5E+02 0.0032 20.1 5.1 59 307-374 1-59 (60)
320 cd01611 GABARAP Ubiquitin doma 32.6 1.6E+02 0.0034 23.1 5.8 62 73-134 21-89 (112)
321 cd06537 CIDE_N_B CIDE_N domain 32.5 83 0.0018 23.1 3.8 38 325-362 21-59 (81)
322 cd01775 CYR1_RA Ubiquitin doma 32.3 1.6E+02 0.0035 22.5 5.4 41 232-272 6-47 (97)
323 CHL00030 rpl23 ribosomal prote 31.9 66 0.0014 24.3 3.4 35 314-348 19-53 (93)
324 cd06398 PB1_Joka2 The PB1 doma 31.5 1.5E+02 0.0032 22.3 5.3 42 235-276 6-53 (91)
325 KOG2561 Adaptor protein NUB1, 30.6 39 0.00085 33.1 2.5 55 318-372 53-107 (568)
326 PRK00529 elongation factor P; 30.5 65 0.0014 27.8 3.7 87 2-95 38-127 (186)
327 COG0089 RplW Ribosomal protein 30.3 94 0.002 23.6 4.0 61 313-373 20-90 (94)
328 PF02192 PI3K_p85B: PI3-kinase 29.2 82 0.0018 23.0 3.4 22 89-110 2-23 (78)
329 KOG2507 Ubiquitin regulatory p 28.1 1E+02 0.0023 30.0 4.7 85 75-161 313-402 (506)
330 PF02991 Atg8: Autophagy prote 27.9 1.4E+02 0.0031 23.0 4.8 44 15-58 37-81 (104)
331 PF02017 CIDE-N: CIDE-N domain 27.9 1.5E+02 0.0033 21.6 4.6 49 249-300 21-71 (78)
332 TIGR03260 met_CoM_red_D methyl 27.8 3.5E+02 0.0076 22.4 8.4 107 169-287 9-118 (150)
333 cd01612 APG12_C Ubiquitin-like 27.7 92 0.002 23.2 3.6 59 317-376 18-81 (87)
334 PRK14578 elongation factor P; 27.2 41 0.00089 29.1 1.8 86 3-95 41-129 (187)
335 PF00276 Ribosomal_L23: Riboso 25.9 1.2E+02 0.0025 22.8 3.9 40 10-49 20-60 (91)
336 PF03671 Ufm1: Ubiquitin fold 24.9 2.7E+02 0.0058 20.0 5.4 57 242-298 19-76 (76)
337 PRK11840 bifunctional sulfur c 24.1 2.9E+02 0.0063 26.2 6.9 61 161-228 6-66 (326)
338 PRK08453 fliD flagellar cappin 23.9 2.2E+02 0.0048 29.9 6.6 84 161-245 136-236 (673)
339 KOG2561 Adaptor protein NUB1, 23.8 70 0.0015 31.4 2.8 58 90-147 53-110 (568)
340 COG5272 UBI4 Ubiquitin [Posttr 23.2 22 0.00047 24.1 -0.5 54 2-55 2-55 (57)
341 PF04023 FeoA: FeoA domain; I 22.8 1.7E+02 0.0036 20.5 4.1 37 206-243 26-62 (74)
342 KOG3309 Ferredoxin [Energy pro 22.7 1.2E+02 0.0025 25.3 3.5 27 1-27 44-70 (159)
343 PF02563 Poly_export: Polysacc 22.6 1.5E+02 0.0032 21.5 3.8 56 283-339 7-68 (82)
344 cd01668 TGS_RelA_SpoT TGS_RelA 22.5 2.3E+02 0.005 18.4 6.3 58 308-374 2-59 (60)
345 PRK12280 rplW 50S ribosomal pr 21.0 1.6E+02 0.0034 24.7 4.0 38 314-351 22-60 (158)
346 PF11816 DUF3337: Domain of un 20.8 2.4E+02 0.0053 26.7 5.9 64 316-379 249-330 (331)
347 smart00143 PI3K_p85B PI3-kinas 20.2 1.2E+02 0.0027 22.1 2.9 22 89-110 2-23 (78)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.87 E-value=1.1e-21 Score=152.17 Aligned_cols=98 Identities=43% Similarity=0.621 Sum_probs=93.4
Q ss_pred cccccccccCceeeEEEEeecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccc
Q 016849 283 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362 (381)
Q Consensus 283 tl~~y~i~~~~tl~l~~~~~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~ 362 (381)
..-.+++.+-+|+|+.+++...|+|+|++..|+++.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~d 85 (103)
T cd01802 6 EPPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLND 85 (103)
T ss_pred CCCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHH
Confidence 34456788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEecCCC
Q 016849 363 YNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 363 ~~i~~~~~i~l~~~~~GG 380 (381)
|+|++|++|+++++++||
T Consensus 86 y~I~~~stL~l~~~l~GG 103 (103)
T cd01802 86 YNISEGCTLKLVLAMRGG 103 (103)
T ss_pred cCCCCCCEEEEEEecCCC
Confidence 999999999999999998
No 2
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.9e-23 Score=153.15 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=74.5
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+||++++.|||++++|+|||||+++|++|++++|||+++|+|+|+|++|+|++||++|+|+..||+|++++++++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998776
No 3
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.82 E-value=5.3e-20 Score=142.87 Aligned_cols=98 Identities=43% Similarity=0.621 Sum_probs=92.9
Q ss_pred ccccccccccccceeeEeecCCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccc
Q 016849 55 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134 (381)
Q Consensus 55 tl~~~~i~~~s~i~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~ 134 (381)
-...+++.+.+++|+++++++.|+|+|++.+|+++.+++.+++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~d 85 (103)
T cd01802 6 EPPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLND 85 (103)
T ss_pred CCCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceeEEEeeecc
Q 016849 135 YNIQKESTLHLVLRLRGG 152 (381)
Q Consensus 135 ~~i~~~~~i~l~~~~~~~ 152 (381)
|+|.++++||++++.+++
T Consensus 86 y~I~~~stL~l~~~l~GG 103 (103)
T cd01802 86 YNISEGCTLKLVLAMRGG 103 (103)
T ss_pred cCCCCCCEEEEEEecCCC
Confidence 999999999999887653
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.82 E-value=4.6e-20 Score=135.44 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=71.5
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|+|+|++. ++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++++|||+++|++||
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999974 689999999999999999999999999999999999999999999999999999999999999998
No 5
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=5.7e-21 Score=153.07 Aligned_cols=76 Identities=96% Similarity=1.328 Sum_probs=74.4
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|||+++.|+++++++++++||+++|+|||+++|||++||+|+|+|++|+|++||+||+|+..||+|++++++++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998765
No 6
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.81 E-value=7.7e-20 Score=134.32 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.5
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~ 73 (381)
|+|+|++++|++++++|.+++||.++|++|++++|+|+++|+|+|+|+.|+|+++|++|+|.+++++|+++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998875
No 7
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.80 E-value=1.4e-19 Score=132.92 Aligned_cols=73 Identities=40% Similarity=0.596 Sum_probs=70.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++. ++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|++||++|+|.+++|+|+++++.+
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 89999984 89999999999999999999999999999999999999999999999999999999999998765
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.80 E-value=2.2e-19 Score=132.80 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=74.9
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 9
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.79 E-value=4.5e-19 Score=130.15 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=72.7
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|+|+++.|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||+++++|++++|++||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998
No 10
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.78 E-value=3.7e-19 Score=131.33 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.9
Q ss_pred CEEEEEcCCCcE-EEEE-eecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeec
Q 016849 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (381)
Q Consensus 1 ~~i~~~~~~g~~-~~~~-v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~ 74 (381)
|+|+|++++|++ ++++ +.+++||.++|++|++.+|+|+++|+|+|.|+.|+|+.+|++|+|.+++++++.+++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 999999999997 7895 8999999999999999999999999999999999999999999999999999998864
No 11
>PTZ00044 ubiquitin; Provisional
Probab=99.78 E-value=5.4e-19 Score=130.74 Aligned_cols=75 Identities=49% Similarity=0.803 Sum_probs=72.8
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++++|+++++++.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|++.+++++|+.+++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988654
No 12
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.77 E-value=1.3e-18 Score=128.72 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=74.8
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|+|+|++.+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++++|++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 13
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.77 E-value=1.2e-18 Score=127.95 Aligned_cols=74 Identities=35% Similarity=0.640 Sum_probs=71.8
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 378 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 378 (381)
|+|+|++.+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||+++++|++++|.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~~ 74 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRPP 74 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998853
No 14
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.76 E-value=2.6e-18 Score=127.11 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=74.7
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|+|+|+..+|+++.++++++.||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 15
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.2e-19 Score=116.35 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=68.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~ 70 (381)
|.|-|++++||.+.++++|.|+|+.+|++|.+++||||.+|+|+|.|+++.|+.|-++|+...+|.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999974
No 16
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.75 E-value=2.1e-18 Score=126.56 Aligned_cols=73 Identities=32% Similarity=0.597 Sum_probs=70.4
Q ss_pred EEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|||++++|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+++|++|+|.+++++++.+++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999887654
No 17
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.75 E-value=5.3e-18 Score=125.48 Aligned_cols=77 Identities=25% Similarity=0.480 Sum_probs=74.8
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
+|+|+|+...|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+ +|++|||++|++|+++..++||+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 589999999999999999999999999999999999999999999999999999 99999999999999999999995
No 18
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.73 E-value=8.8e-18 Score=123.95 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.6
Q ss_pred eeeEEEeeCCcE-EEEE-eeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecC
Q 016849 305 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 378 (381)
Q Consensus 305 m~I~v~~~~g~~-~~~~-v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 378 (381)
|+|+|++.+|++ +.++ +.+++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+-
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999997 6885 8999999999999999999999999999999999999999999999999999999874
No 19
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.72 E-value=9.8e-18 Score=121.76 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=68.4
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~ 70 (381)
|+|+|++..|+++.++++|++||.+||++|+++.|+|+++|+|+|.|+.|+|+.+|++|+|.+++++|+.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999985
No 20
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.72 E-value=1.9e-17 Score=122.51 Aligned_cols=75 Identities=55% Similarity=0.948 Sum_probs=72.7
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++++|+++.+++.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+++|++|++.+++++|+.++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988654
No 21
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.72 E-value=2.1e-17 Score=122.22 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=72.9
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++++|+++.+++.+++||.+||++|+++.|+|++.|+|+|.|+.|+|+.+|++|++.+++++|+.+++++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998655
No 22
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.71 E-value=1.5e-17 Score=120.75 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.7
Q ss_pred EEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEe
Q 016849 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
|+|++++|+++++++.+++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++|++|++.+
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999753
No 23
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.71 E-value=2.9e-17 Score=119.24 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=68.0
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
|+|++..|+++.+++++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||++||+||++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999876
No 24
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.71 E-value=1.8e-17 Score=119.62 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.7
Q ss_pred EEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeE
Q 016849 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (381)
Q Consensus 4 ~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~ 71 (381)
-|++++|++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999865
No 25
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.6e-18 Score=128.77 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=74.6
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|+++++++.|++.++++.|++||..+|++|....|||++.|+|.|+|+.|+|+.||++|||+..|||+++.|++||
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999
No 26
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.70 E-value=5.3e-17 Score=117.89 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=68.8
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
|.|+|++..|+.+.++++|++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|||++|++|||..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999874
No 27
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.69 E-value=4.9e-17 Score=120.30 Aligned_cols=75 Identities=25% Similarity=0.491 Sum_probs=71.8
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++.+|+++++++++++||.+||++|+++.|+|+++|+|+|.|+.|+|+ +|++|+|.++++++++....++
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 89999999999999999999999999999999999999999999999999998 9999999999999999876554
No 28
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.68 E-value=3e-16 Score=118.65 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=76.4
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
...|+|+|++.+|+...++|.+++|++.||++++++.|+|+++|+|+|+|+.|+++.|+++|+|++|++|+++++++||
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 3458899999999999999999999999999999999999999999999999999999999999999999999999998
No 29
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.68 E-value=1.5e-16 Score=117.96 Aligned_cols=72 Identities=39% Similarity=0.725 Sum_probs=70.0
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCC--CCccceEEecCeeccCCCccccccccccccceeeEe
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~i--p~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
|+|+|++++|+++++++.+++||.++|++|++.+|+ |+++|+|+|+|+.|+|+.+|++|+|.+++++++.++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999 999999999999999999999999999999998765
No 30
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.67 E-value=1.5e-16 Score=114.86 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.7
Q ss_pred EEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
.|+..+|+++.+++++++||++||++|++..|+|+++|+|+|+|++|+|+.+|++|+|++|++|||.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 46888999999999999999999999999999999999999999999999999999999999999976
No 31
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.67 E-value=2.4e-16 Score=116.79 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.6
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCC--CCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEec
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 377 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 377 (381)
|+|+|++.+|+++.+++++++||++||++|++.+|+ |++.|+|+|+|+.|+|+.+|++|||++|++|++.++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 789999999999999999999999999999999999 9999999999999999999999999999999998764
No 32
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.67 E-value=1.5e-16 Score=116.27 Aligned_cols=71 Identities=44% Similarity=0.692 Sum_probs=69.4
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeE
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~ 71 (381)
|+|+|++++|+++++++.+++||.++|++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+..
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999875
No 33
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.67 E-value=2e-16 Score=116.60 Aligned_cols=70 Identities=33% Similarity=0.652 Sum_probs=67.9
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
++|+++.+++++++||++||++|+..+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++++++||.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999984
No 34
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.67 E-value=2.9e-16 Score=114.81 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.7
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
|+|+|+.++|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++..|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999865
No 35
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.4e-17 Score=130.29 Aligned_cols=77 Identities=95% Similarity=1.301 Sum_probs=75.4
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
|+|||+.+.|++.++++.+++||..+|++|++.+|||+++|+|+|.|+.|+|..+|+||+|+..+||+|++|++||.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999994
No 36
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.65 E-value=4.8e-16 Score=112.61 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=66.2
Q ss_pred EeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecC
Q 016849 310 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 378 (381)
Q Consensus 310 ~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 378 (381)
++.+|+.+.++|++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.|.+
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 467899999999999999999999999999999999999999999999999999999999999998864
No 37
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.65 E-value=5.2e-16 Score=112.92 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.4
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
++|+|++.+|+ ..+++++++||++||++|++..|+|+++|+|.|+|+.|+|+.+|++|||++|++|++++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 589999999999999999999999999999999999999999999999999999999876
No 38
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.65 E-value=3.8e-16 Score=113.65 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.7
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEe
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
|.|+|++.+|+ .++++++++||.+||++|++++|+|+++|+|+|.|+.|+|+.+|++|++.+++++|++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 68999999997 499999999999999999999999999999999999999999999999999999999763
No 39
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.65 E-value=2.5e-16 Score=117.27 Aligned_cols=72 Identities=32% Similarity=0.451 Sum_probs=69.9
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceE--EecCeeccCCCccccccccccccceeeEe
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l--~~~g~~L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
|+|+|++.+|+++++++++++||.++|++|+++.|+|+++|+| +|.|+.|+|+.+|++|++.+++++++.++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 7899999999999999999999999999999999999999999 89999999999999999999999999876
No 40
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.64 E-value=5.1e-16 Score=115.61 Aligned_cols=72 Identities=32% Similarity=0.451 Sum_probs=70.1
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEE--EECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L--~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
|+|+|+..+|+++.+++++++||++||++|++..|+|+++|+| .|+|+.|+|+.+|++|||++|++|+++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 8899999999999999999999999999999999999999999 78999999999999999999999999987
No 41
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.3e-16 Score=104.24 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.5
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEE
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~ 146 (381)
|.|.|++++|+.+.++++|+++|+.+|+++++++||||.+|+|+|+|+.+.|+.|-++|++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 4688999999999999999999999999999999999999999999999999999999999999999974
No 42
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.62 E-value=6.3e-16 Score=112.24 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.7
Q ss_pred EEEEcC-CCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCC-Cccccccccccccceee
Q 016849 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (381)
Q Consensus 3 i~~~~~-~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~-~tl~~~~i~~~s~i~l~ 70 (381)
|+|++. +|++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.+++++++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999987 68999999999999874
No 43
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.60 E-value=2.4e-15 Score=109.15 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.0
Q ss_pred eEEEee-CCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCC-CcccccCCCCCCEEEEE
Q 016849 307 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 374 (381)
Q Consensus 307 I~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~ 374 (381)
|+|++. .|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 467888 899999999999999999999999999999999999999999987 58999999999999974
No 44
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.59 E-value=3.2e-15 Score=108.29 Aligned_cols=68 Identities=56% Similarity=0.962 Sum_probs=65.5
Q ss_pred EcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEee
Q 016849 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (381)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~ 73 (381)
++++|++++++|.+++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.++++|++..++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 68899999999999999999999999999999999999999999999999999999999999998764
No 45
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.59 E-value=2.8e-15 Score=110.46 Aligned_cols=68 Identities=32% Similarity=0.655 Sum_probs=65.3
Q ss_pred CCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
++|+++++++++++||.++|++|+...|+|+++|+|+|+|+.|+|+++|++|+|.+++++|+.+++++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999999999999999999999999999999988654
No 46
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.58 E-value=6.6e-15 Score=111.30 Aligned_cols=75 Identities=17% Similarity=0.444 Sum_probs=72.5
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++++|+++.++|.+++|+..||++++++.|+|+++|+|+|+|+.|+++.|+++|++.++++|++++++.+
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~G 86 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTG 86 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEeccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999988765
No 47
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.58 E-value=3.2e-15 Score=108.94 Aligned_cols=71 Identities=24% Similarity=0.267 Sum_probs=63.4
Q ss_pred CEEEEEcCCCcEEE--EEeecCccHHHHHHHHhhhcC--CCCccceEEecCeeccCCCcccccc--ccccccceeeE
Q 016849 1 MQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 71 (381)
Q Consensus 1 ~~i~~~~~~g~~~~--~~v~~~dtv~~~K~~i~~~~~--ip~~~q~l~~~g~~L~d~~tl~~~~--i~~~s~i~l~~ 71 (381)
+.++|++++|+++. +++++++||.++|++|.+..+ .|+++|+|+|.|+.|+|+.||++|. +.++.|+||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 57899999999954 555899999999999999874 4579999999999999999999995 99999999974
No 48
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.55 E-value=1.3e-14 Score=105.73 Aligned_cols=72 Identities=25% Similarity=0.254 Sum_probs=64.3
Q ss_pred CeeeEEEeeCCcEEEEEe--eCcchHHHHHHHHHhHhC--CCCCCeEEEECCEEcCCCCcccccC--CCCCCEEEEEE
Q 016849 304 GMQIFVKTLTGKTITLEV--ESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 375 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v--~~~~tV~~lK~~i~~~~g--i~~~~q~L~~~g~~L~d~~~L~~~~--i~~~~~i~l~~ 375 (381)
++.+.|++++|+++.+++ ++++||.+||++|++..+ .|+++|+|+|.|+.|+|+.+|++|+ +.+|.+|||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 467999999999955554 899999999999999884 4579999999999999999999996 99999999984
No 49
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.54 E-value=1.7e-14 Score=105.07 Aligned_cols=69 Identities=29% Similarity=0.490 Sum_probs=65.5
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 374 (381)
++|.|++. |+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 46888886 9999999999999999999999999999999999999999999999999999999999986
No 50
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.48 E-value=7.4e-14 Score=101.70 Aligned_cols=69 Identities=29% Similarity=0.490 Sum_probs=66.2
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~ 70 (381)
|+|.|++. |+++.+++.+++||.++|++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+++++++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 68999997 9999999999999999999999999999999999999999999999999999999999874
No 51
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.48 E-value=9e-14 Score=101.52 Aligned_cols=69 Identities=29% Similarity=0.372 Sum_probs=62.3
Q ss_pred EEEEEc--CCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeecc-CCCcccccccc-ccccceeeE
Q 016849 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (381)
Q Consensus 2 ~i~~~~--~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~-d~~tl~~~~i~-~~s~i~l~~ 71 (381)
.++|+. ..|.+++++|.+++||.+||++|++++|||+++|+| |+|+.|. |+++|++|++. +++++||.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 566765 579999999999999999999999999999999999 9999996 66999999999 779999864
No 52
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.47 E-value=1.3e-13 Score=100.63 Aligned_cols=68 Identities=24% Similarity=0.439 Sum_probs=62.9
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE---CCEEcCCCCcccccCCCCCCEEEEE
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~---~g~~L~d~~~L~~~~i~~~~~i~l~ 374 (381)
.|.|+ ..|+++.++|++++||++||++|++.+|+|+++|+|+| .|+.+.|+.+|++|+|++|+.|.|.
T Consensus 2 ~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 2 PVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred EEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 45555 57899999999999999999999999999999999996 8999999999999999999999875
No 53
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.45 E-value=1.9e-13 Score=99.80 Aligned_cols=69 Identities=23% Similarity=0.440 Sum_probs=64.2
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEE---cCeeccCCCcccccccccCCceeEE
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~g~~L~d~~tl~~~~i~~~~~i~l~ 146 (381)
|.|.|+ +.|+.+.+++++++||++||++|++..|+|+++|+|+| .|+.|.|+.+|++|++++|+.|+|+
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 356776 67899999999999999999999999999999999996 8999999999999999999999886
No 54
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.45 E-value=2.4e-13 Score=96.78 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.1
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 369 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~ 369 (381)
|+|+|++.+ +++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999988 7899999999999999999999999999999999999999999999999999886
No 55
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.43 E-value=1.3e-13 Score=105.71 Aligned_cols=73 Identities=29% Similarity=0.409 Sum_probs=65.5
Q ss_pred EEEEEcCCCcEEE-EEeecCccHHHHHHHHh-----hhcCCC--CccceEEecCeeccCCCcccccc------ccccccc
Q 016849 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (381)
Q Consensus 2 ~i~~~~~~g~~~~-~~v~~~dtv~~~K~~i~-----~~~~ip--~~~q~l~~~g~~L~d~~tl~~~~------i~~~s~i 67 (381)
.|-|+..+|.-+- +.+.+++||.+||++|+ +++|+| +++|+|+|+|++|+|++||++|+ +....|+
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 4678888886665 88899999999999999 667787 99999999999999999999999 8888999
Q ss_pred eeeEeec
Q 016849 68 HLVLRLR 74 (381)
Q Consensus 68 ~l~~~~~ 74 (381)
|++++++
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9999864
No 56
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.42 E-value=4.3e-13 Score=95.43 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.6
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccc
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s 65 (381)
|+|+|++.+ +++.++|.+++||.+||++|+++.|+|++.|+|+|+|+.|.|+.+|++|++.+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999998 7999999999999999999999999999999999999999999999999998875
No 57
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.41 E-value=6.1e-13 Score=97.15 Aligned_cols=64 Identities=30% Similarity=0.372 Sum_probs=59.0
Q ss_pred eeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcC-CCCcccccCCC-CCCEEEEEE
Q 016849 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 375 (381)
Q Consensus 311 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~L~~~~i~-~~~~i~l~~ 375 (381)
...|.++.++|++++||++||.+|++++|+|++.|+| |+|+.|. |+.+|++||++ +|++++|.+
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 4568899999999999999999999999999999999 9999885 77899999999 889999864
No 58
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.41 E-value=1.5e-13 Score=98.66 Aligned_cols=55 Identities=33% Similarity=0.582 Sum_probs=50.1
Q ss_pred eec-CccHHHHHHHHhhh--cCCC-CccceEEecCeeccCCCccccccccccccceeeE
Q 016849 17 VES-SDTIDNVKAKIQDK--EGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (381)
Q Consensus 17 v~~-~dtv~~~K~~i~~~--~~ip-~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~ 71 (381)
|.| ++||.++|++|+++ +|+| +++|+|+|.|++|+|++||++|+|.+++++|++.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 444 79999999999999 5675 9999999999999999999999999999999964
No 59
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.37 E-value=9.3e-13 Score=125.03 Aligned_cols=72 Identities=31% Similarity=0.618 Sum_probs=69.7
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcC---CCCccceEEecCeeccCCCccccccccccccceeeEe
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~---ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
|+|+||+++|+++.|+|.+++||.+||++|++..| +|+++|+|+|.|+.|+|+++|++|+|.+++++++.+.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence 89999999999999999999999999999999998 9999999999999999999999999999999988765
No 60
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.35 E-value=8.8e-13 Score=101.12 Aligned_cols=77 Identities=27% Similarity=0.377 Sum_probs=66.4
Q ss_pred CCeEEEEEccCCcEE-EEEEeCCCCHHHHHHHHH-----hHhCCC--CCCeEEEEcCeeccCCCcccccc------cccC
Q 016849 75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKE 140 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i~-----~~~gip--~~~q~L~~~g~~L~d~~tl~~~~------i~~~ 140 (381)
+.+.|.++..+|..+ +..+++++||.++|++|+ +++|+| +++|+|+|+|++|+|+.||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 457788888899765 778899999999999999 445566 99999999999999999999999 6677
Q ss_pred CceeEEEeeec
Q 016849 141 STLHLVLRLRG 151 (381)
Q Consensus 141 ~~i~l~~~~~~ 151 (381)
.++|+++++..
T Consensus 83 ~TmHvvlr~~~ 93 (113)
T cd01814 83 ITMHVVVQPPL 93 (113)
T ss_pred eEEEEEecCCC
Confidence 89999988753
No 61
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.35 E-value=1.1e-12 Score=94.21 Aligned_cols=55 Identities=33% Similarity=0.549 Sum_probs=50.0
Q ss_pred ee-CcchHHHHHHHHHhHh--CCC-CCCeEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 321 VE-SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 321 v~-~~~tV~~lK~~i~~~~--gi~-~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
|+ .++||.+||++|+++. |++ +++|+|+|+|+.|+|+.+|++|||++|++|+|+.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 44 4779999999999996 575 9999999999999999999999999999999975
No 62
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=3e-12 Score=121.57 Aligned_cols=72 Identities=31% Similarity=0.618 Sum_probs=69.4
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhC---CCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
|+|+||++.|+++.++|++++||.+||++|+...| +|++.|+|+|+|+.|+|+++|++|+|+++++|++.+.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence 78999999999999999999999999999999998 9999999999999999999999999999999998764
No 63
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.27 E-value=2e-11 Score=89.01 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.9
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCC-CCeEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~-~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
|+|++++.+|+.+.+.|.+++++..|++.+++..|+|+ +.++|.|+|+.|++++|++++||++|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 67899999999999999999999999999999999999 999999999999999999999999999999863
No 64
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.25 E-value=2.3e-11 Score=87.78 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.4
Q ss_pred EEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 309 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 309 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
|+..+|+.+.+.+++++||.+||++|+..+|+|++.|+|.|+|+.|+|+.+|++|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5667899999999999999999999999999999999999999999999999999999999999864
No 65
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.20 E-value=4.1e-11 Score=89.02 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=56.9
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcC-CCCcccccCCCCCCEEEEEEe
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~i~l~~~ 376 (381)
...++|++++||.+||.+|+.++++||++|+|.++|+.|. |+.||++|||..||+|.|.+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 4788999999999999999999999999999999999997 456999999999999999875
No 66
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.19 E-value=4.3e-11 Score=88.89 Aligned_cols=62 Identities=27% Similarity=0.328 Sum_probs=57.1
Q ss_pred EEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCccc-CCCCcccccccCCCCEEEEEEee
Q 016849 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL 225 (381)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L-~d~~tL~~y~i~~~~~i~l~~~~ 225 (381)
...++|++++||.+||.+|.+.+++||++|+|+|+|+.| +|.+||++||+.+++.|++.++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 456789999999999999999999999999999999999 56799999999999999999754
No 67
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.16 E-value=4.2e-11 Score=113.80 Aligned_cols=73 Identities=37% Similarity=0.565 Sum_probs=69.2
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEec
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 377 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 377 (381)
.+.|.|++.++ .+.+.|..+.||.+||+.|...+++|+++++|+|.||.|+|++||..|||++|+||||+.+.
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 36788999887 79999999999999999999999999999999999999999999999999999999999874
No 68
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.15 E-value=1.1e-10 Score=84.20 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.2
Q ss_pred EEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEE
Q 016849 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (381)
Q Consensus 81 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~ 147 (381)
|+..+|+.+.+++.+++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|.+|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6677899999999999999999999999999999999999999999999999999999999998864
No 69
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.14 E-value=5.1e-11 Score=113.21 Aligned_cols=73 Identities=37% Similarity=0.565 Sum_probs=69.8
Q ss_pred CeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEee
Q 016849 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (381)
Q Consensus 76 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~ 149 (381)
.+.|+||+.++ .+.+.|..+.||.+||+.|...+++|+++++|||+||+|+|+.||..|||.+|.+|||+++.
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 47899999988 88999999999999999999999999999999999999999999999999999999999864
No 70
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.13 E-value=2.5e-10 Score=83.14 Aligned_cols=73 Identities=84% Similarity=1.127 Sum_probs=69.1
Q ss_pred EEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeec
Q 016849 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (381)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~ 74 (381)
++++.+..|+++.+++.++++|..+|.+|..+.|+|.++|++.+.|+.|+|+.++.+|+|..+++++++.+++
T Consensus 1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 3688899999999999999999999999999999999999999999999999999999999999999987654
No 71
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.12 E-value=2.5e-10 Score=83.19 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.8
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCC-CCeEEEEcCeeccCCCcccccccccCCceeEEE
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~ 147 (381)
|+|+|+..+|+.+.+.|.+++++..|++.++++.|+|+ +..+|.|.|+.|+++.|++++++.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 67899999999999999999999999999999999999 999999999999999999999999999999863
No 72
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.11 E-value=1.1e-10 Score=105.40 Aligned_cols=72 Identities=39% Similarity=0.686 Sum_probs=69.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcC--CCCccceEEecCeeccCCCccccccccccccceeeEe
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~--ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
|.|+|||+.|.+|++++.|++||.++|.+|....| .|.++|+|+|+|+.|.|+.|+.+|+|..++-+-+.+.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMls 74 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLS 74 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEe
Confidence 89999999999999999999999999999999999 9999999999999999999999999999998877664
No 73
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.05 E-value=2.9e-10 Score=102.72 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.7
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhC--CCCCCeEEEEcCeeccCCCcccccccccCCceeEEEeee
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~~ 150 (381)
|.|+||++.+..|++++.|++||.++|.+|+...| .|++.|+|||+|+.|.|+.++.+|++.+++.|-++++..
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 67999999999999999999999999999999998 999999999999999999999999999999999988654
No 74
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.00 E-value=3.2e-09 Score=77.17 Aligned_cols=74 Identities=84% Similarity=1.159 Sum_probs=69.8
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
+++.+..|+++.+.+.+..+|..+|.+|+...|+|++.|++.+.|+.|+|+.+|++|+|..+++++++.++.++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~~ 75 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRGG 75 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 56777889999999999999999999999999999999999999999999999999999999999999988653
No 75
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.99 E-value=1.7e-09 Score=82.50 Aligned_cols=63 Identities=32% Similarity=0.454 Sum_probs=58.4
Q ss_pred cEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCC-------CCCCEEEEEEec
Q 016849 315 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRL 377 (381)
Q Consensus 315 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i-------~~~~~i~l~~~~ 377 (381)
.++.+++.+++||.+||++|+.....||++|+|+.++..|+|++||+|||+ +..++|-|.+|.
T Consensus 12 TTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 12 TTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred eEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 356779999999999999999999999999999988899999999999999 779999999984
No 76
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.97 E-value=3.5e-09 Score=79.31 Aligned_cols=68 Identities=22% Similarity=0.407 Sum_probs=56.4
Q ss_pred eEEEee-CCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE-ECCE-----Ec-CCCCcccccCCCCCCEEEEE
Q 016849 307 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 307 I~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~~g~-----~L-~d~~~L~~~~i~~~~~i~l~ 374 (381)
|+|... +....+..++++.||++||++++..+|+|++.|+|. |.|+ .| +|+.+|++||+++|++||++
T Consensus 4 v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 4 VNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 444432 344556679999999999999999999999999994 7777 46 57789999999999999986
No 77
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.85 E-value=1.2e-08 Score=77.18 Aligned_cols=69 Identities=28% Similarity=0.565 Sum_probs=55.8
Q ss_pred eeEEEeeCC--cEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEEC----CE---Ec-CCCCcccccCCCCCCEEEEE
Q 016849 306 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK---QL-EDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 306 ~I~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~----g~---~L-~d~~~L~~~~i~~~~~i~l~ 374 (381)
.++|..... ......++++.||++||.+|+..+|+|++.|+|.+. +. .+ +|+.+|.+||+++|++|++.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 456665443 588999999999999999999999999999999875 22 23 46789999999999999985
No 78
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.79 E-value=2.5e-08 Score=74.69 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=57.4
Q ss_pred EEEEEccC-CcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE-EcCe-----ec-cCCCcccccccccCCceeEEE
Q 016849 78 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 147 (381)
Q Consensus 78 ~i~v~~~~-g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~g~-----~L-~d~~tl~~~~i~~~~~i~l~~ 147 (381)
.|.|.... .......++++.||.+||++++..+|+||..|+|. |.|+ .| +|..+|++|++.+|.+||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 44554433 33455569999999999999999999999999995 7887 45 678899999999999999974
No 79
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1e-07 Score=71.29 Aligned_cols=77 Identities=18% Similarity=0.472 Sum_probs=72.7
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
+++.|+..+|.+..+.|..+++...|+...+++.|++.+..|+.|+|+.+.+.+|.+++++++|+.|.++..+.||+
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 45666777888899999999999999999999999999999999999999999999999999999999999999996
No 80
>PLN02560 enoyl-CoA reductase
Probab=98.74 E-value=2.1e-08 Score=93.25 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=62.5
Q ss_pred CEEEEEcCCCcEE---EEEeecCccHHHHHHHHhhhcCC-CCccceEEec---C----eeccCCCcccccccccccccee
Q 016849 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (381)
Q Consensus 1 ~~i~~~~~~g~~~---~~~v~~~dtv~~~K~~i~~~~~i-p~~~q~l~~~---g----~~L~d~~tl~~~~i~~~s~i~l 69 (381)
|+|.|+..+|+.+ ++++++++||.+||++|+++.++ ++++|+|.+. | ..|.|+.+|++|++.+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999999999998 79999999999999999999987 8999999983 3 3789999999999999998554
No 81
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.72 E-value=8.5e-08 Score=75.23 Aligned_cols=75 Identities=29% Similarity=0.492 Sum_probs=56.6
Q ss_pred CeEEEEEccCCc-EEEEEEeCCCCHHHHHHHHHhHhC-------CCCCCeEEEEcCeeccCCCcccccccccCC------
Q 016849 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 141 (381)
Q Consensus 76 ~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~------ 141 (381)
.+.|.++..+|. ...+.+++++||.+||+.|...+. ..++..+|+|.||.|+|+.||++|.+..|+
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 466778888998 788999999999999999987531 124668999999999999999999987766
Q ss_pred ceeEEEeee
Q 016849 142 TLHLVLRLR 150 (381)
Q Consensus 142 ~i~l~~~~~ 150 (381)
++||++++.
T Consensus 82 vmHlvvrp~ 90 (111)
T PF13881_consen 82 VMHLVVRPN 90 (111)
T ss_dssp EEEEEE-SS
T ss_pred EEEEEecCC
Confidence 678887654
No 82
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.72 E-value=3.2e-08 Score=75.66 Aligned_cols=72 Identities=31% Similarity=0.461 Sum_probs=61.8
Q ss_pred CEEEEEcC-CCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccc-------cccccceeeEe
Q 016849 1 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 72 (381)
Q Consensus 1 ~~i~~~~~-~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i-------~~~s~i~l~~~ 72 (381)
|.+|+... .-.|+.++++++.||.+||++|+.....||+.|+|+-.+..|+|++||+||++ +..+++-|.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 77888874 45567799999999999999999999999999999976778999999999999 55667666665
No 83
>PLN02560 enoyl-CoA reductase
Probab=98.69 E-value=3.8e-08 Score=91.47 Aligned_cols=69 Identities=30% Similarity=0.521 Sum_probs=61.7
Q ss_pred eeeEEEeeCCcEE---EEEeeCcchHHHHHHHHHhHhCC-CCCCeEEEEC-------CEEcCCCCcccccCCCCCCEEEE
Q 016849 305 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA-------GKQLEDGRTLADYNIQKESTLHL 373 (381)
Q Consensus 305 m~I~v~~~~g~~~---~~~v~~~~tV~~lK~~i~~~~gi-~~~~q~L~~~-------g~~L~d~~~L~~~~i~~~~~i~l 373 (381)
|+|.|+..+|+.+ ++++++++||+|||++|++..++ +++.|+|.+. |..|+|+++|+++|+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6788888889887 79999999999999999999986 8999999972 34789999999999999999875
No 84
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.2e-08 Score=100.57 Aligned_cols=74 Identities=34% Similarity=0.573 Sum_probs=70.2
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEeeec
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~~~ 151 (381)
..|+||+++.++.++.+...+||.+||+.|.++.+|+.+.|||||.||+|.|++++.+|+| +|.+|||+-++..
T Consensus 3 ~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred cceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 3589999999999999999999999999999999999999999999999999999999999 9999999987643
No 85
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.59 E-value=6.9e-08 Score=71.25 Aligned_cols=71 Identities=28% Similarity=0.426 Sum_probs=45.1
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEEC---CEEc--CCCCcccccCCCCCCEEEEE
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~---g~~L--~d~~~L~~~~i~~~~~i~l~ 374 (381)
.+|-|.|++.+| .+-+++++++|+.+|+++|++..++|...|.|+.+ ...+ .++.+|+++||+.|+.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 468889999887 47779999999999999999999999999998763 2345 46789999999999999975
No 86
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.59 E-value=2.8e-07 Score=69.67 Aligned_cols=70 Identities=27% Similarity=0.544 Sum_probs=55.9
Q ss_pred EEEEEccCC--cEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEc----C---eec-cCCCcccccccccCCceeEEE
Q 016849 78 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLVL 147 (381)
Q Consensus 78 ~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----g---~~L-~d~~tl~~~~i~~~~~i~l~~ 147 (381)
.|.|..... ......++++.||.+||.+++..+|+|++.|+|.+. + ..+ +|..+|.+||+.+|.+||+.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 455554443 478899999999999999999999999999999865 1 223 678999999999999998864
No 87
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.5e-08 Score=99.20 Aligned_cols=72 Identities=35% Similarity=0.607 Sum_probs=69.0
Q ss_pred EEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeec
Q 016849 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (381)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~ 74 (381)
.+.|||++.++.++.|+..+||.++|..|.++-+|+.++||++|+|+.|.|++++.+|+| ++-++||+-+++
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 478999999999999999999999999999999999999999999999999999999999 999999998754
No 88
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.56 E-value=4.3e-07 Score=71.31 Aligned_cols=73 Identities=30% Similarity=0.500 Sum_probs=55.4
Q ss_pred eeEEEeeCCc-EEEEEeeCcchHHHHHHHHHhHh-------CCCCCCeEEEECCEEcCCCCcccccCCCCCC------EE
Q 016849 306 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKE-------GIPPDQQRLIFAGKQLEDGRTLADYNIQKES------TL 371 (381)
Q Consensus 306 ~I~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~-------gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~------~i 371 (381)
.+..+..+|. +..+.+++++||++||+.|...+ -..++.++|+|.|+.|+|+.+|++|.+..|. ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 3445556898 89999999999999999999776 1346789999999999999999999998776 68
Q ss_pred EEEEecC
Q 016849 372 HLVLRLR 378 (381)
Q Consensus 372 ~l~~~~~ 378 (381)
||++|..
T Consensus 84 Hlvvrp~ 90 (111)
T PF13881_consen 84 HLVVRPN 90 (111)
T ss_dssp EEEE-SS
T ss_pred EEEecCC
Confidence 8888643
No 89
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.54 E-value=4.6e-07 Score=63.61 Aligned_cols=73 Identities=26% Similarity=0.361 Sum_probs=64.4
Q ss_pred eeeEEEeccCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecC-----cccCCCCcccccccCCCCEEEEEEeec
Q 016849 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVLRLR 226 (381)
Q Consensus 153 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g-----~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (381)
++|+|+..++....+.|+|..+|..+|++|...++++- .|+|.|.. +.|.+..+|++|||...-.|.++-+.+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p 78 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFP 78 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCC
Confidence 46889999999999999999999999999999999988 89999862 567899999999999888888776543
No 90
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.49 E-value=3.2e-07 Score=67.55 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=47.4
Q ss_pred eCcchHHHHHHHHHhHhC-CCCCCeEEE--ECCEEcCCCCcccccCCCCCCEEEE
Q 016849 322 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 373 (381)
Q Consensus 322 ~~~~tV~~lK~~i~~~~g-i~~~~q~L~--~~g~~L~d~~~L~~~~i~~~~~i~l 373 (381)
+++.||++||..|++..+ ++++.|+|. +.|+.|.|+.+|.+||+.+|++||+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 588999999999999976 589999996 6899999999999999999999986
No 91
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.46 E-value=7.2e-07 Score=62.63 Aligned_cols=70 Identities=27% Similarity=0.372 Sum_probs=62.1
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcC-----eeccCCCcccccccccCCceeEEE
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVL 147 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g-----~~L~d~~tl~~~~i~~~~~i~l~~ 147 (381)
++|+|+...+..+.+.|+|..+|.++|++|....|++- .|+|.|.. ..|.+..+|++|||..+-.|.|+-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 47899999999999999999999999999999999988 99999852 457899999999999887777764
No 92
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.34 E-value=2.4e-06 Score=59.38 Aligned_cols=64 Identities=45% Similarity=0.670 Sum_probs=59.8
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
.+|....+.+.++.|+.++|.+|+++.|++++.+.|+++|..+.+...+.++++.+++.|++..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3688899999999999999999999999999999999999999999888899999999999864
No 93
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.30 E-value=1.4e-06 Score=64.11 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.6
Q ss_pred eCCCCHHHHHHHHHhHhC-CCCCCeEEE--EcCeeccCCCcccccccccCCceeE
Q 016849 94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 145 (381)
Q Consensus 94 ~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~g~~L~d~~tl~~~~i~~~~~i~l 145 (381)
+++.||.+||..|+...+ +++++|+|. +.|+.|.|+.+|++||+.+|+++++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 578899999999998876 689999995 7899999999999999999998775
No 94
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.7e-06 Score=61.90 Aligned_cols=78 Identities=17% Similarity=0.359 Sum_probs=73.2
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
.+.+.|...+|.+..+.+..+++...|+...+.+.|-..+..|+.|+|+.++.++|.+++++++++.|.++..+.|||
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 355667778899999999999999999999999999999999999999999999999999999999999999999997
No 95
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.09 E-value=6.2e-06 Score=60.85 Aligned_cols=69 Identities=29% Similarity=0.434 Sum_probs=44.5
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEec---Ceec--cCCCccccccccccccceee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV 70 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~---g~~L--~d~~tl~~~~i~~~s~i~l~ 70 (381)
|-|-|+..+| ++.+++++++|+.++|++|++..++|.+.|.|+.+ ...| .++.+|+++++.+++-+.|.
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 4567888888 89999999999999999999999999999888664 2344 35789999999999988764
No 96
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.3e-06 Score=59.36 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=63.5
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 374 (381)
++.+++.-|+..-+.+++++||.|+|+.|+..+|-.++...|--++..++|.-+|++|.|.+|-.+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 455666779999999999999999999999999999999999999999999999999999999988875
No 97
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.08 E-value=1.2e-05 Score=55.69 Aligned_cols=66 Identities=45% Similarity=0.659 Sum_probs=60.1
Q ss_pred EcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeE
Q 016849 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (381)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~ 71 (381)
...+|+...+.+.+..|+.++|++|.++.|++++.|.|++.|..+.+...+.+|.+..++++++..
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 334789999999999999999999999999999999999999999998888899999999988753
No 98
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=8.2e-05 Score=55.88 Aligned_cols=76 Identities=17% Similarity=0.448 Sum_probs=68.9
Q ss_pred eeeEEEeccCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEeeccc
Q 016849 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (381)
Q Consensus 153 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~ 228 (381)
+++.|+.-++..+.+.|..+++...|....+++.|++.+..|+.|+|+.+....|.++.++.+++.|.++....+|
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 4566766667888999999999999999999999999999999999999999999999999999999998776555
No 99
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5e-06 Score=56.54 Aligned_cols=70 Identities=26% Similarity=0.405 Sum_probs=61.5
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEE
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~ 146 (381)
+++.+...-|+.+.+.+.+++||.++|..|+.+.|..++...|---+..++|+-+|++|.|.+|-.+.+.
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 4566777779999999999999999999999999999998888766778899999999999998776654
No 100
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=2.1e-05 Score=70.92 Aligned_cols=63 Identities=33% Similarity=0.651 Sum_probs=58.3
Q ss_pred cEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEE-Eee
Q 016849 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 149 (381)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~-~~~ 149 (381)
..++++|..+..|.+||+.++...|+|+++.+++|+|++|.++.++..+++...+.+|++ ++|
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 357889999999999999999999999999999999999999999999999999999987 455
No 101
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2.1e-05 Score=70.86 Aligned_cols=70 Identities=30% Similarity=0.599 Sum_probs=60.9
Q ss_pred eeeEEEee---CCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 016849 305 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 305 m~I~v~~~---~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 374 (381)
|.++++.. ....+.++|+.+++|.+||+.++...|+|+++.+++|.|++|.|+.++..|++...|.+|++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 34555532 33457889999999999999999999999999999999999999999999999999988876
No 102
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.86 E-value=3e-05 Score=57.22 Aligned_cols=59 Identities=32% Similarity=0.422 Sum_probs=49.5
Q ss_pred cEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE-CC-EEcCCCCcccccCC-------CCCCEEEE
Q 016849 315 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNI-------QKESTLHL 373 (381)
Q Consensus 315 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~-~g-~~L~d~~~L~~~~i-------~~~~~i~l 373 (381)
.++.++.+++.||-|||.+++....-|+++|+|+. +. +.|+|+++|+|||. +...++-|
T Consensus 12 ttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~pA~vgL 79 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQAPATVGL 79 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccccccCCCceeee
Confidence 35677899999999999999999999999999987 44 67899999999955 45555554
No 103
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.72 E-value=0.00016 Score=59.88 Aligned_cols=76 Identities=30% Similarity=0.523 Sum_probs=60.1
Q ss_pred eeeEEEeeCC----cEEEEEeeCcchHHHHHHHHHhHhCCCCCCe-EEEE-CCEEc--CCCCcccccCCCCC----CEEE
Q 016849 305 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQKE----STLH 372 (381)
Q Consensus 305 m~I~v~~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q-~L~~-~g~~L--~d~~~L~~~~i~~~----~~i~ 372 (381)
|+|+|.+++| .++.+.+.+++||.+|+..|.+..+++...| .|++ .+..| .++..+..+.-.+. .+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 5799999999 6899999999999999999999999999985 4555 34444 34555666654433 3789
Q ss_pred EEEecCCC
Q 016849 373 LVLRLRGG 380 (381)
Q Consensus 373 l~~~~~GG 380 (381)
|.+|++||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 99999998
No 104
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.66 E-value=0.00011 Score=51.69 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.7
Q ss_pred eccCcEEEEEEecCCcHHHHHHhhhhccCCCcccceeeecCccccCCccccccccccCceeeE
Q 016849 235 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (381)
Q Consensus 235 ~~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l 297 (381)
.+++++..+.+.|+.++.++-++.+.++++.++.+.|.|+++.++.+.+++--|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 578899999999999999999999999999999999999999999999999999999999865
No 105
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.65 E-value=7.4e-05 Score=55.20 Aligned_cols=61 Identities=30% Similarity=0.441 Sum_probs=51.7
Q ss_pred CEEEEEc-CCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEec-C-eeccCCCccccccc
Q 016849 1 MQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G-KQLEDGRTLADYNI 61 (381)
Q Consensus 1 ~~i~~~~-~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~-g-~~L~d~~tl~~~~i 61 (381)
|.+|++. ....++.+..+++.||.++|.++.....=|++.|+|+-- . ..|+|+.||+|++.
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 6677776 345677799999999999999999999999999999983 3 56799999999954
No 106
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.63 E-value=0.00017 Score=50.65 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.6
Q ss_pred eeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEE
Q 016849 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 373 (381)
Q Consensus 311 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 373 (381)
..+++...+.+.|++++.++-+..+.++|++++.-.|.|+++.|+-+.++.-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 467899999999999999999999999999999999999999999999999999999999875
No 107
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00033 Score=67.02 Aligned_cols=71 Identities=24% Similarity=0.425 Sum_probs=64.4
Q ss_pred EEEEEccCCcEEEEE-EeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEee
Q 016849 78 QIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (381)
Q Consensus 78 ~i~v~~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~ 149 (381)
.|.|+ +.|+.+.++ ++.++|+..+|.++...+|+||++|++.+.|..+.|+-.+....|++|.+++|+...
T Consensus 5 ~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 5 TVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred eEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 35555 778888888 999999999999999999999999999999999999988989999999999998654
No 108
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00041 Score=66.44 Aligned_cols=68 Identities=25% Similarity=0.451 Sum_probs=62.1
Q ss_pred eEEEeeCCcEEEEE-eeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 307 IFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 307 I~v~~~~g~~~~~~-v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
|.|+ ..|+.+.++ ++.++|+..||+++...+|+||+.|++...|..+.|+--+...+|++|.++++.-
T Consensus 6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence 4444 678999997 9999999999999999999999999999999999999889999999999999863
No 109
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.25 E-value=0.00076 Score=49.77 Aligned_cols=68 Identities=22% Similarity=0.396 Sum_probs=48.1
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCC------eEEE-ECCEEcCCCCcccccCCCCCCEEEE
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ------QRLI-FAGKQLEDGRTLADYNIQKESTLHL 373 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~------q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l 373 (381)
.|.|...+|+.+.+.+..+.+|++|...|.+..+.+... ..|. -+|..|+++.+|+++||.+|+.+.|
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 355555557899999999999999999999998874433 2344 4799999999999999999999986
No 110
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.09 E-value=0.0044 Score=45.97 Aligned_cols=71 Identities=23% Similarity=0.329 Sum_probs=60.6
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCC-eEEE--ECCEEcCCC--CcccccCCCCCCEEEEE
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 374 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~L~--~~g~~L~d~--~~L~~~~i~~~~~i~l~ 374 (381)
...|.||.++|+.+.-.+.+++||++|..-|......+... ..|. |-.+.+.++ .||+++|+.+.++|.|.
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 35788899999999999999999999999999998877765 7775 467788644 69999999999999874
No 111
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.01 E-value=0.0027 Score=46.84 Aligned_cols=69 Identities=22% Similarity=0.386 Sum_probs=48.8
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCC------eEEE-EcCeeccCCCcccccccccCCceeE
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ------QRLI-FAGKQLEDGRTLADYNIQKESTLHL 145 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~------q~L~-~~g~~L~d~~tl~~~~i~~~~~i~l 145 (381)
+.|+|...+|+.+.+.++.+.+|.++...+.+..+.+... -.|. -.|..|+++.+|+++||.+|+.+.+
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 4567776557899999999999999999999988765433 2333 4689999999999999999998876
No 112
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.97 E-value=0.0035 Score=52.11 Aligned_cols=64 Identities=22% Similarity=0.412 Sum_probs=50.4
Q ss_pred CEEEEEcCCC----cEEEEEeecCccHHHHHHHHhhhcCCCCccc-eEEec-Ceecc--CCCcccccccccc
Q 016849 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQLE--DGRTLADYNIQKE 64 (381)
Q Consensus 1 ~~i~~~~~~g----~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q-~l~~~-g~~L~--d~~tl~~~~i~~~ 64 (381)
|+|+|.++.| .++.+.+.++.||.+|+..|.+..++|...| .|.+. +..|. ++..++.+.-...
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~ 72 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ 72 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcC
Confidence 7999999999 6999999999999999999999999999885 45554 55663 4445555544333
No 113
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.82 E-value=0.0097 Score=44.10 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=59.6
Q ss_pred CCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCC-eEEE--EcCeeccCC--CcccccccccCCceeEE
Q 016849 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 146 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~L~--~~g~~L~d~--~tl~~~~i~~~~~i~l~ 146 (381)
+...|.|+..+|+.+.-.+.+++||.+|...+......+... -.|+ |-.+.+.+. .||++.|+..+++|++.
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 346788999999999999999999999999999887777654 6665 567888544 69999999999888764
No 114
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.74 E-value=0.0034 Score=48.03 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=43.6
Q ss_pred EEEEccC-CcEEEEEEe--CCCCHHHHHHHHHhHhC--CCCCCeEEEEcCeeccCCCccccc
Q 016849 79 IFVKTLT-GKTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 135 (381)
Q Consensus 79 i~v~~~~-g~~~~l~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~~ 135 (381)
|+|+..+ -..+.++++ ...||..||..|.+..+ ..-.+++|+|+|+.|.|...|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 4444444 244677777 78999999999999884 445678999999999998877764
No 115
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.54 E-value=0.014 Score=43.07 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=57.4
Q ss_pred CCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE--EcCeeccC---CCcccccccccCCceeE
Q 016849 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 145 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~d---~~tl~~~~i~~~~~i~l 145 (381)
+...|.|+..+|+.+.-.+.+++||.++.+.+....+.....-.|+ |-.+.+.+ +.||.+.|+..++++.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 3467889999999999999999999999999976666666666775 56677754 47999999988877665
No 116
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.54 E-value=0.015 Score=42.98 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=58.1
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE--ECCEEcCC---CCcccccCCCCCCEEEEE
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 374 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~--~~g~~L~d---~~~L~~~~i~~~~~i~l~ 374 (381)
...|.||.++|..+.-.+.+++|+++|.+-+....+.+.....|. |-.+.+.+ +.||.++|+-+.++|.|-
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence 356889999999999999999999999999977667766677775 45666753 479999999988888763
No 117
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.33 E-value=0.027 Score=41.15 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=53.2
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE--CCEEcCC---CCcccccCCCCCCEEEEE
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLADYNIQKESTLHLV 374 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~--~g~~L~d---~~~L~~~~i~~~~~i~l~ 374 (381)
..|.||.++|+...-....++|+++|.+-|.....- .....|.. -.+.+.+ +.||.++|+. .+.+.+.
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 468899999999999999999999999999876543 45566654 4567754 7799999999 5555443
No 118
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.24 E-value=0.035 Score=39.30 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=55.0
Q ss_pred EEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCC--CC---CCeEEEECCEEcCCCCcccccCCCCCCEEEE
Q 016849 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PP---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 373 (381)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi--~~---~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 373 (381)
-.+..+|.++.+.++...+|..|-..+.+...+ ++ +.++..-.++.|.++..|.+|+|.+|+.+.+
T Consensus 10 D~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 10 DFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 345678999999999999999999888887654 33 3467777899999999999999999998864
No 119
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.21 E-value=0.028 Score=41.34 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=53.5
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCC-CCCCeEEE--ECCEEcCC-CCcccccCCCCCCE
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKEST 370 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi-~~~~q~L~--~~g~~L~d-~~~L~~~~i~~~~~ 370 (381)
...|.||.++|+.....++.++||++|.+-|....+- ......|. |-.+.|.| +.||.|.|+.+.+.
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 4578999999999999999999999999999987643 23556665 56777764 67999999986443
No 120
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.18 E-value=0.012 Score=45.03 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=39.6
Q ss_pred cEEEEEec--CCchHHHHHHHhhhhhC--CCCCceEEEecCcccCCCCcccccc
Q 016849 163 KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN 212 (381)
Q Consensus 163 ~~~~i~v~--~~~tV~~lK~~i~~~~~--ip~~~q~L~~~g~~L~d~~tL~~y~ 212 (381)
..+.+++. ...||..||..|.+..+ ..-..++|+|+|+.|.|...|+.--
T Consensus 12 pDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 12 PDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred CCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence 34566666 78899999999999983 3445789999999999988776644
No 121
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.08 E-value=0.047 Score=40.75 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=57.5
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECC--EEcC--------CCCcccccCCCCCCEEEE
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE--------DGRTLADYNIQKESTLHL 373 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g--~~L~--------d~~~L~~~~i~~~~~i~l 373 (381)
...|.+|.++|....-.+..++||++|..-|.. .+-.++...|..+= +.+. .+.||.+.|+.+..+|.|
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 357889999999999999999999999999965 45566788887754 6675 357999999998888876
Q ss_pred E
Q 016849 374 V 374 (381)
Q Consensus 374 ~ 374 (381)
.
T Consensus 83 ~ 83 (85)
T cd01774 83 Q 83 (85)
T ss_pred e
Confidence 4
No 122
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.011 Score=50.71 Aligned_cols=64 Identities=28% Similarity=0.428 Sum_probs=57.2
Q ss_pred CCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 313 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
.++.+-+.+..-+|+.++|.++....|+++..|+++|+|..|-|...|.+|+|++|....+-++
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVI 218 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEE
Confidence 4566888899999999999999999999999999999999999999999999999976555443
No 123
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.04 Score=40.55 Aligned_cols=71 Identities=15% Similarity=0.365 Sum_probs=63.7
Q ss_pred CeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEE
Q 016849 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 76 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~ 146 (381)
-+.+.|...+|..+.+.+..+.+...|-+......|=.-+..|+.|+|+.++.++|..++++.+++.|..+
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav 94 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAV 94 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHH
Confidence 45666767788999999999999999999999999999999999999999999999999999999887654
No 124
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.98 E-value=0.052 Score=39.65 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=51.9
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE--EcCeecc---CCCcccccccccCCceeE
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 145 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~---d~~tl~~~~i~~~~~i~l 145 (381)
..|.|+..+|+.+.-.++.++||.++.+.|.....- ...-.|+ |-.+.+. .+.||.+.|+. .+.+.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQ 74 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEE
Confidence 468899999999999999999999999999866543 4445555 5667775 47899999998 444443
No 125
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.97 E-value=0.051 Score=39.97 Aligned_cols=69 Identities=16% Similarity=0.312 Sum_probs=55.6
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE--ECCEEcCC---CCcccccCCCCCCEEEEE
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 374 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~--~~g~~L~d---~~~L~~~~i~~~~~i~l~ 374 (381)
..|.||.++|....-....++|+++|.+-|....+-+ ....|. |-.+.+.+ +.||.++|+.+.++|.|-
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 4688899999999999999999999999999765543 445554 45677753 479999999999988763
No 126
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=95.84 E-value=0.015 Score=51.25 Aligned_cols=69 Identities=29% Similarity=0.427 Sum_probs=51.1
Q ss_pred eeeEEEeeCC-cEE-EEEeeCcchHHHHHHHHHhHh-CCCCCCeEEEE----CCEEcCCCCcccccCCCCCCEEEE
Q 016849 305 MQIFVKTLTG-KTI-TLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHL 373 (381)
Q Consensus 305 m~I~v~~~~g-~~~-~~~v~~~~tV~~lK~~i~~~~-gi~~~~q~L~~----~g~~L~d~~~L~~~~i~~~~~i~l 373 (381)
|.|++...++ -.. ....+..+|+.|+++++..+. .+.+..+|+.+ +|++|-|+++|++|+..+|+++++
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 4566665444 222 356667889999997666654 68887776665 799999999999999999987764
No 127
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.80 E-value=0.059 Score=39.61 Aligned_cols=69 Identities=16% Similarity=0.308 Sum_probs=54.8
Q ss_pred CeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE--EcCeeccC---CCcccccccccCCceeE
Q 016849 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 145 (381)
Q Consensus 76 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~d---~~tl~~~~i~~~~~i~l 145 (381)
...|.|+..+|+.+.-.++.++|+.++.+.+....+-+ ..-.|+ |-.+.+.+ +.||.+.|+.+.+++.|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 35688999999999999999999999999998765433 345555 66788853 58999999988887765
No 128
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.79 E-value=0.056 Score=39.73 Aligned_cols=66 Identities=23% Similarity=0.287 Sum_probs=52.1
Q ss_pred CeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCC-CCCeEEE--EcCeeccC-CCcccccccccCC
Q 016849 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQLED-GRTLADYNIQKES 141 (381)
Q Consensus 76 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip-~~~q~L~--~~g~~L~d-~~tl~~~~i~~~~ 141 (381)
...|.|+..+|+.+.-.++.++||.++.+.+....+-+ .....|. |-.+.|.| +.||.+.|+.+..
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 35788999999999999999999999999999876432 2445564 66787754 7899999988543
No 129
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.02 Score=49.14 Aligned_cols=61 Identities=30% Similarity=0.461 Sum_probs=55.8
Q ss_pred CCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeE
Q 016849 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (381)
Q Consensus 85 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l 145 (381)
+++.+.+.+...+|+.++|...+...|+.+..|+++|+|+.|-|+..|.+|++..|+.-.+
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 5778889999999999999999999999999999999999999999999999999964433
No 130
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.47 E-value=0.13 Score=37.94 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=60.8
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE--CCEEcC---CCCcccccCCCCCCEEEEEEe
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~--~g~~L~---d~~~L~~~~i~~~~~i~l~~~ 376 (381)
+..+|.||.++|+...-....++++++|-.-+.. .|.+++...|+- --+.+. .+.||.+.|+.+..+|.|--|
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 3457999999999999999999999999999998 578888888874 345553 357999999999999987544
No 131
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.40 E-value=0.11 Score=38.68 Aligned_cols=70 Identities=13% Similarity=0.228 Sum_probs=55.6
Q ss_pred CCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE--EcCeecc--------CCCcccccccccCCcee
Q 016849 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--------DGRTLADYNIQKESTLH 144 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~--------d~~tl~~~~i~~~~~i~ 144 (381)
+.+.|.|+..+|+.+.-.+..++||++|...+.. .+-.+....|+ |--+.+. .+.||.+.|+.+..++.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 4567889999999999999999999999999964 45556677776 4347775 36799999998777665
Q ss_pred E
Q 016849 145 L 145 (381)
Q Consensus 145 l 145 (381)
+
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 5
No 132
>PRK06437 hypothetical protein; Provisional
Probab=95.40 E-value=0.14 Score=36.30 Aligned_cols=59 Identities=20% Similarity=0.372 Sum_probs=46.8
Q ss_pred CCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 313 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.++...++++++.||++|-+. .|+++....+..||+.+. .++-+++|+.|.+.-...||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 345678888999999998755 488999998999999997 45566679999998666555
No 133
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=95.16 E-value=0.13 Score=46.89 Aligned_cols=107 Identities=17% Similarity=0.342 Sum_probs=72.9
Q ss_pred EEEecCCcHHHHHHhhhhccCCCcccceeeecC------ccccCCccccccccccCceeeEEEEeec-------------
Q 016849 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG------------- 303 (381)
Q Consensus 243 ~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g------~~l~d~~tl~~y~i~~~~tl~l~~~~~~------------- 303 (381)
+.|...++|++|-..|.++.|+|.+...++|.- ..++...|+....+.+||.|..-.....
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 667899999999999999999999977776642 3378899999999999999976543211
Q ss_pred -------CeeeEEEe---eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE
Q 016849 304 -------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349 (381)
Q Consensus 304 -------~m~I~v~~---~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~ 349 (381)
.+.|.++. .++..+++.++...|-.+|-++|++..|++|+..+|+-
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 13455543 34558999999999999999999999999999999874
No 134
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.06 E-value=0.17 Score=37.24 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=58.4
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE--CCEEcC---CCCcccccCCCCCCEEEEEE
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~--~g~~L~---d~~~L~~~~i~~~~~i~l~~ 375 (381)
...|.+|.++|....-....++++++|..-+... |.++....|.- --+.+. .+.||.+.|+.+..+|.|--
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Vee 79 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEE 79 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEc
Confidence 3578899999999999999999999999999875 77888888863 355553 35699999999999988743
No 135
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=95.00 E-value=0.27 Score=43.56 Aligned_cols=124 Identities=20% Similarity=0.285 Sum_probs=63.8
Q ss_pred cEEEEEEecCCcHHHHHHhhhhccCCCcc-cceee----ecCcc---ccCCccccccccccCceeeEEEEe------e--
Q 016849 239 KTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI----FAGKQ---LEDGRTLADYNIQKESTLHLVLRL------R-- 302 (381)
Q Consensus 239 ~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~-~q~L~----~~g~~---l~d~~tl~~y~i~~~~tl~l~~~~------~-- 302 (381)
+.+.+-|..+.||.+|..++..+.+++.. ...|. ++++. +..+.++... .+..++++-.-+ .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 46788899999999999999999998765 23332 34443 5667777666 332344432111 1
Q ss_pred --cCeeeEEEee-------CCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCe---E--EEECC-----EEcCCCC--ccc
Q 016849 303 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ---R--LIFAG-----KQLEDGR--TLA 361 (381)
Q Consensus 303 --~~m~I~v~~~-------~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q---~--L~~~g-----~~L~d~~--~L~ 361 (381)
..+-|.|... -|-.+.+.|.++.|..++|++|++++|++-..+ + ++.++ ..++|+. .|.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~ 191 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILF 191 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEETTEE---EE--TT-T----
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEecCCcccceeccccchhhhh
Confidence 1244555432 266789999999999999999999999975433 3 33333 4566654 454
Q ss_pred ccC
Q 016849 362 DYN 364 (381)
Q Consensus 362 ~~~ 364 (381)
+..
T Consensus 192 ~~~ 194 (213)
T PF14533_consen 192 DEI 194 (213)
T ss_dssp GGG
T ss_pred hhh
Confidence 443
No 136
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.99 E-value=0.16 Score=36.07 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=55.1
Q ss_pred eeEEEeccCcEEEEEecCCchHHHHHHHhhhhhCC--CC---CceEEEecCcccCCCCcccccccCCCCEEEE
Q 016849 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PP---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (381)
Q Consensus 154 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i--p~---~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l 221 (381)
.|-++..+|.++.+.++...++..|-..+.+...+ ++ ..-+..-+++.|.++..|.+|+|.+|+.+.+
T Consensus 8 TvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 8 TVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 44556678999999999999999998888776543 33 3456677899999999999999999998865
No 137
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.50 E-value=0.3 Score=36.02 Aligned_cols=69 Identities=16% Similarity=0.338 Sum_probs=58.0
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE--EcCeec---cCCCcccccccccCCceeEE
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L---~d~~tl~~~~i~~~~~i~l~ 146 (381)
-.|.|+.++|+.+.-.+..++++.+|...+.. .|.++....|+ |--|.+ +.+.||.+.|+...+++.+.
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 46889999999999999999999999999988 57788888887 556666 33579999999988887764
No 138
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=94.37 E-value=0.076 Score=38.70 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=48.3
Q ss_pred eeCcchHHHHHHHHHhHhC-CCCCCeEEEECCEEcCCCCccccc-CCCCCCEEEEEEe
Q 016849 321 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLR 376 (381)
Q Consensus 321 v~~~~tV~~lK~~i~~~~g-i~~~~q~L~~~g~~L~d~~~L~~~-~i~~~~~i~l~~~ 376 (381)
|.++++|.|+++.+..... ....+..|.++|+.|++...|++. |+++|+++.++..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5789999999999999875 777888999999999988888877 5888999998754
No 139
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.31 E-value=0.19 Score=36.72 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=46.9
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCC----CCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi----~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
...++++++.||.+|.+.+...++- ......+..||+.... +.-+++|+.|.+..+..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~-----~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL-----DTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC-----CcccCCCCEEEEeCCCCCC
Confidence 3567777789999999999987642 3455677779998873 4557779999999988887
No 140
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=94.29 E-value=0.33 Score=44.12 Aligned_cols=122 Identities=17% Similarity=0.362 Sum_probs=80.8
Q ss_pred CeEEEEEccC--CcEE----EEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcC------eeccCCCcccccccccCCce
Q 016849 76 GMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTL 143 (381)
Q Consensus 76 ~~~i~v~~~~--g~~~----~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g------~~L~d~~tl~~~~i~~~~~i 143 (381)
.+-|++|-.+ .+++ .+-|+.+++|.++-..|.++.|+|++...++|.. ..++.+.|++...+.+|+.|
T Consensus 68 ~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi 147 (249)
T PF12436_consen 68 DILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDII 147 (249)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEE
T ss_pred cEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEE
Confidence 3455566443 2222 4678999999999999999999999888777753 45788999999999999999
Q ss_pred eEEEeee--------------------cceeeEEEec---cCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEe
Q 016849 144 HLVLRLR--------------------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197 (381)
Q Consensus 144 ~l~~~~~--------------------~~~~v~v~~~---~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~ 197 (381)
....... ..+.|.++.. .+..+.+.++...|-.+|-++|.++.++.|+..+|.-
T Consensus 148 ~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 148 CFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp EEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred EEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 8887442 1244555442 2457899999999999999999999999998888863
No 141
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=94.27 E-value=0.28 Score=35.82 Aligned_cols=68 Identities=25% Similarity=0.321 Sum_probs=51.6
Q ss_pred EEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCC-CCeEEEE----CC--EEcCCCCcccccCCC--CCCEEEEEEe
Q 016849 309 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF----AG--KQLEDGRTLADYNIQ--KESTLHLVLR 376 (381)
Q Consensus 309 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~-~~q~L~~----~g--~~L~d~~~L~~~~i~--~~~~i~l~~~ 376 (381)
|+.++|...++++++++|+.+|-++|++..|+.. +..-|.+ +| .-|+.+++|.+.... ...++++.++
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 5678999999999999999999999999999754 3445777 23 346788899999887 3445555443
No 142
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=94.23 E-value=0.43 Score=42.28 Aligned_cols=103 Identities=20% Similarity=0.294 Sum_probs=56.8
Q ss_pred cEEEEEEeCCCCHHHHHHHHHhHhCCCCC---CeEEE--EcCee---ccCCCcccccccccCCceeEEEee------e--
Q 016849 87 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGKQ---LEDGRTLADYNIQKESTLHLVLRL------R-- 150 (381)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~---~q~L~--~~g~~---L~d~~tl~~~~i~~~~~i~l~~~~------~-- 150 (381)
+.+.+-|+.+.||.+|.+.++.+.+++.+ ..++. ++++. +..+.++.+. .+...+.+-.-+ .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 45788999999999999999999998765 34443 56654 5666677665 222223322111 1
Q ss_pred --cceeeEEEec-------cCcEEEEEecCCchHHHHHHHhhhhhCCCCC
Q 016849 151 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPPD 191 (381)
Q Consensus 151 --~~~~v~v~~~-------~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~ 191 (381)
+..-|.|-.. -|-.+.+.|.+..|..++|+.|+++.|+|..
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 1233333322 2566788899999999999999999999853
No 143
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.16 E-value=0.37 Score=35.47 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=56.8
Q ss_pred CeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE--EcCeecc---CCCcccccccccCCceeEE
Q 016849 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 76 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~---d~~tl~~~~i~~~~~i~l~ 146 (381)
...|.|+..+|+.+.-.+..++++.+|...+... |.++...+|+ |--+.+. .+.||.+.|+....++.+-
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 4578899999999999999999999999999764 7777777776 6667773 3579999999877776653
No 144
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=93.97 E-value=0.59 Score=33.38 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=48.4
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|.|.+... +....+++.++.||++|-+.+ ++++....+..||+.+.. +.-+++|+.|.+.-...||
T Consensus 5 m~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 5 IRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 45555422 125678888999999998765 778877788889999854 4456679999998766665
No 145
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.17 Score=43.54 Aligned_cols=58 Identities=19% Similarity=0.349 Sum_probs=48.8
Q ss_pred EEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE-ECC-----EEcC-CCCcccccCCCCCCEEEEE
Q 016849 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 317 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~~g-----~~L~-d~~~L~~~~i~~~~~i~l~ 374 (381)
...+..++.|+++||.+++-.+|.+++.+.|. |+| -.|. ++..|..|...+|..||++
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 44567789999999999999999999999984 554 3455 5568999999999999986
No 146
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=93.73 E-value=0.28 Score=36.17 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=48.5
Q ss_pred eeeEEEee------CC-cEEEEEeeCcchHHHHHHHHHhHh-CCCC--CCeEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 016849 305 MQIFVKTL------TG-KTITLEVESSDTIDNVKAKIQDKE-GIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 305 m~I~v~~~------~g-~~~~~~v~~~~tV~~lK~~i~~~~-gi~~--~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 374 (381)
|.|.|+.. -| ....+++..+.|+++|.+.+.... ++.. ....+..||+...++ .-+++|++|.+.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~-----~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTES-----AALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCC-----cCcCCCCEEEEe
Confidence 45566543 24 456778888999999999997765 1111 123466788887544 345679999999
Q ss_pred EecCCC
Q 016849 375 LRLRGG 380 (381)
Q Consensus 375 ~~~~GG 380 (381)
-+..||
T Consensus 77 PpvsGG 82 (82)
T PLN02799 77 PPISGG 82 (82)
T ss_pred CCCCCC
Confidence 888887
No 147
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=93.67 E-value=0.44 Score=33.42 Aligned_cols=61 Identities=15% Similarity=0.330 Sum_probs=44.3
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.||+.+.+ + ..|+++|.+.+ ++++....+-.|++.+.. ...++.-+++|+.|.+.-...||
T Consensus 5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEEeccCC
Confidence 45766666 3 46899998765 677766677889998863 23455667789999998777776
No 148
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=93.42 E-value=0.31 Score=33.16 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=41.7
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
|+|+++ | ..+++..+.|+.+||.++... .=.++++|.+..++..|.+ |+.|.+.-|
T Consensus 1 M~I~vN---~--k~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~~L~e-----~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKVN---E--KEIETEENTTLFELRKESKPD------ADIVILNGFPTKEDIELKE-----GDEVFLIKK 56 (57)
T ss_pred CEEEEC---C--EEEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCccccCC-----CCEEEEEeC
Confidence 556554 3 467888999999999997653 3368999999988776665 788877543
No 149
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=93.25 E-value=0.46 Score=34.69 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=46.8
Q ss_pred EEeccCcEEEEEEecCCcHHHHHHhhhhccCCCccc-ceeee----cCcc--ccCCccccccccccCce
Q 016849 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF----AGKQ--LEDGRTLADYNIQKEST 294 (381)
Q Consensus 233 vk~~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~-q~L~~----~g~~--l~d~~tl~~y~i~~~~t 294 (381)
|..++|...++++++++|+.+|-++|.++.++.... .-|.+ +|.. |+.++++..+....+..
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~ 69 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPP 69 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSS
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCC
Confidence 456788999999999999999999999999986543 34556 2222 68889999997773333
No 150
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=93.02 E-value=0.76 Score=33.74 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=43.6
Q ss_pred EEEEEEecCCcHHHHHHhhhhccCCCcccceeeecCccccCCccccccccccCceeeEE
Q 016849 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (381)
Q Consensus 240 ~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~ 298 (381)
.+...++-...+..||..++.+.++..+.+.|..++..|+++++|.+.+++...++.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 45577888899999999999999999999999988877999999999999998888765
No 151
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=92.99 E-value=0.12 Score=37.61 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=48.0
Q ss_pred EecCCcHHHHHHhhhhccC-CCcccceeeecCccccCCcccccc-ccccCceeeEEEEe
Q 016849 245 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRL 301 (381)
Q Consensus 245 v~~~~tV~~Lk~~i~~~~~-ip~~~q~L~~~g~~l~d~~tl~~y-~i~~~~tl~l~~~~ 301 (381)
|.+.++|.++++.+..... .....+.|.++|..|++...+++. |++++++|.+..++
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 4678999999999998765 566788899999999999999888 58889999888654
No 152
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=92.81 E-value=0.15 Score=45.06 Aligned_cols=70 Identities=27% Similarity=0.358 Sum_probs=50.3
Q ss_pred eEEEEEccCC-cEEE-EEEeCCCCHHHHHHHHHh-HhCCCCCCeEEE----EcCeeccCCCcccccccccCCceeEE
Q 016849 77 MQIFVKTLTG-KTIT-LEVESSDTIDNVKAKIQD-KEGIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 77 ~~i~v~~~~g-~~~~-l~v~~~~tV~~lK~~i~~-~~gip~~~q~L~----~~g~~L~d~~tl~~~~i~~~~~i~l~ 146 (381)
|.|++...++ ..++ ...+..+|+.|+++.+.. ...+.++++++. -+|+.|-|+.+|++|+..+|.++.+.
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 4566655554 3344 556778899999977765 456777655543 46999999999999999888766553
No 153
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=92.49 E-value=0.69 Score=31.82 Aligned_cols=66 Identities=23% Similarity=0.458 Sum_probs=53.8
Q ss_pred CCcEEEEEeeCcchHHHHHHHHHhHh---CCCCCCeEEEE-CCEEcCCCCcccccCCCCCCEEEEEEecC
Q 016849 313 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLR 378 (381)
Q Consensus 313 ~g~~~~~~v~~~~tV~~lK~~i~~~~---gi~~~~q~L~~-~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 378 (381)
+|+...++.+++....-..++--+.. |-|+++-.|.- +|..|+-++...|||+.+|-+++|+++..
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKAG 73 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKAG 73 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeecc
Confidence 68888899999888777777666555 46777766653 79999999999999999999999998753
No 154
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=92.18 E-value=0.44 Score=35.46 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=38.2
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCC---CCeEEEE
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 349 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~---~~q~L~~ 349 (381)
...+.++|+++-+.+.|+..+.+|++.|.++.|++. ....|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 345688999999999999999999999999999987 5777877
No 155
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=91.87 E-value=0.41 Score=34.39 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.3
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECC
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 351 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g 351 (381)
+.|-.++|+...+.+.|+.|+.|+-.+++++.|+.++.-.++..|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 346678999999999999999999999999999999999887753
No 156
>smart00455 RBD Raf-like Ras-binding domain.
Probab=91.84 E-value=0.46 Score=33.96 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=42.0
Q ss_pred EEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECC--EEcC
Q 016849 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE 355 (381)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g--~~L~ 355 (381)
.|-.++|+...+.+.|+.|+.|+-..+.++.|+.++.-.++..| ++|+
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ld 52 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLD 52 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccee
Confidence 45578999999999999999999999999999999999999854 3554
No 157
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=91.82 E-value=0.048 Score=50.05 Aligned_cols=57 Identities=21% Similarity=0.454 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHh----------HhCCCCCCeE-----EEECCEEcCCCCcccccCCC-------CCCEEEEEEecCCC
Q 016849 324 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGG 380 (381)
Q Consensus 324 ~~tV~~lK~~i~~----------~~gi~~~~q~-----L~~~g~~L~d~~~L~~~~i~-------~~~~i~l~~~~~GG 380 (381)
++||.++|..+++ .+++|.+.++ |.|+-+++.|+++|++..-. .+.++.+.+=..||
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGG 181 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGG 181 (309)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECC
Confidence 6899999999999 8999999999 99999999999999887654 47788877777776
No 158
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.78 E-value=9.6 Score=34.35 Aligned_cols=212 Identities=15% Similarity=0.171 Sum_probs=112.2
Q ss_pred ccccccCCceeEEEeeecceeeEEEe-ccCcE-EEE--Eec-CCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcc
Q 016849 134 DYNIQKESTLHLVLRLRGGMQIFVKT-LTGKT-ITL--EVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (381)
Q Consensus 134 ~~~i~~~~~i~l~~~~~~~~~v~v~~-~~g~~-~~i--~v~-~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL 208 (381)
+|-+..|+.|.+.+--...+...+.. .+|.. +++ .+. ...|+.++.+.|..+..-.
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~~------------------- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSKG------------------- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhhc-------------------
Confidence 46778888888776332222222222 23432 111 233 5679999999998765210
Q ss_pred cccccCCCCEEEEEEeeccceeeeEEeccCcEEEEEEecCCcHHHHHHhhhhccCCCcccc--e-ee--ecCcc------
Q 016849 209 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--R-LI--FAGKQ------ 277 (381)
Q Consensus 209 ~~y~i~~~~~i~l~~~~~~~~~i~vk~~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q--~-L~--~~g~~------ 277 (381)
+.-....+.+.+....+..++|...-.+.-.+.+.+..|+.++ |...-|+.+... . +. .+|+.
T Consensus 62 ---~~~~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~a---i~~AGG~~~~~~~~~~i~~~~~g~~~~~~id 135 (239)
T TIGR03028 62 ---GFVKQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDV---LALAGGVTPDGADVITLVREREGKIFRKQID 135 (239)
T ss_pred ---CcccCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHH---HHHcCCCCccCCCeEEEEEecCCeEEEEEEE
Confidence 0001122334444434456666555555556777777777765 444445443321 1 11 23332
Q ss_pred ----ccCCccccccccccCceeeEEEEeecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCC-CCCCeEEEE---
Q 016849 278 ----LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF--- 349 (381)
Q Consensus 278 ----l~d~~tl~~y~i~~~~tl~l~~~~~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi-~~~~q~L~~--- 349 (381)
+..+..-.++-+++||+|++-.. -.++|-..-++.-.+.+.++.|+.++-.+..-...- .+....++.
T Consensus 136 l~~l~~~g~~~~ni~L~~GD~I~V~~~----~~v~v~G~V~~pg~~~~~~~~tl~~al~~aGG~~~~a~~~~v~i~R~~~ 211 (239)
T TIGR03028 136 FPALFNPGGDNENILVAGGDIIYVDRA----PVFYIYGEVQRPGAYRLERNMTVMQALAQGGGLTPRGTERGIRVMRRDD 211 (239)
T ss_pred HHHHHhcCCCcCCcEEcCCCEEEEcCC----ccEEEEeEccCCeEEEeCCCCCHHHHHHhcCCCCcccCcceEEEEEECC
Confidence 22334445788999999988632 146676666666677788888887765544333321 122233432
Q ss_pred CCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 350 AGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 350 ~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
+|..-.-...+.+ .+++||.|++--
T Consensus 212 ~g~~~~~~~~~~~-~l~~gDii~V~~ 236 (239)
T TIGR03028 212 KGAVEEVSGELGD-LVQPDDVIYVRE 236 (239)
T ss_pred CCcEEEEecCCCc-ccCCCCEEEEeC
Confidence 3442111111222 488999999754
No 159
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=91.70 E-value=0.87 Score=33.43 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=44.2
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
.+...++-..++..||..++.+.++..+.-.++.....|+++++|-+-+++-.-++.+++-
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 3455677888999999999999999999999888888899999999999998888888764
No 160
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=91.59 E-value=0.96 Score=33.07 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=34.4
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCE
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 352 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~ 352 (381)
++.+.|.++.+.++|.++|.++.++|++...|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 8999999999999999999999999999999999533
No 161
>PRK06437 hypothetical protein; Provisional
Probab=91.40 E-value=1.6 Score=30.87 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=45.1
Q ss_pred ccCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEee
Q 016849 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (381)
Q Consensus 160 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (381)
.+++.-.++++...||.+|-+.+ +++++...+..+|+.+. .++-+++||.|.++..-
T Consensus 8 ~g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 8 KGHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVF 64 (67)
T ss_pred cCCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEEecc
Confidence 35666788888889999887654 88888888889999887 66778899999887543
No 162
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=91.39 E-value=1.6 Score=30.36 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=40.6
Q ss_pred CCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 313 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
||+ .+++.+..|+++|.+.+ +++ ....+..+|..+..+. -.+.-+++|+.|.+.-...||
T Consensus 6 Ng~--~~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQ--TLSLPDGATVADALAAY----GAR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCE--EEECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence 454 44566788999998865 343 3456778999875331 223336679999999887776
No 163
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=91.32 E-value=1.2 Score=32.54 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=45.1
Q ss_pred EEEEeeCc-chHHHHHHHHHhHhC-CC--CCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 317 ITLEVESS-DTIDNVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 317 ~~~~v~~~-~tV~~lK~~i~~~~g-i~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
..+++.++ .||.+|+..+.+.+. +- .....+..||+...+ +.-+++|+.|.+.-+..||
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 57788876 899999999999874 11 133466778888775 4566779999999888887
No 164
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=90.48 E-value=1.3 Score=30.84 Aligned_cols=62 Identities=19% Similarity=0.401 Sum_probs=45.0
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.||+.+ ++..+.|+.+|.+.+ ++++....+..||+.+..+ .-.++-+++|+.|.+.....||
T Consensus 3 iNg~~~--~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 3 VNGEPV--EVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred ECCeEE--EcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 356544 456778999998864 5778888888999988533 2344567789999998777776
No 165
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=90.37 E-value=1.2 Score=31.26 Aligned_cols=61 Identities=21% Similarity=0.416 Sum_probs=45.1
Q ss_pred CCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 313 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
+|+ .+++..+.|+.+|.+.+ ++++....+..+|+.+..+ .-.+.-+++|+.|.+.....||
T Consensus 5 Ng~--~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 5 NGE--PREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred CCe--EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 454 44556788999998775 4778888888999988644 2233457779999999887776
No 166
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=90.30 E-value=1.4 Score=30.95 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=44.5
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.||+.+. +.++.|+.+|-.. .++++...-+.++|..+..+. .+.+ +++|+.|.+.-...||
T Consensus 5 vNG~~~~--~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 5 VNEEQVE--VDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred ECCEEEE--cCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence 4565444 4577888887654 588999999999999886443 2235 8899999998666555
No 167
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=90.26 E-value=2.3 Score=29.78 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=44.5
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.||+. +++..+.|+++|-.. .++++....+..+|..+..+ .-.+.-+++|+.|.+....-||
T Consensus 5 vNG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 5 LNGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred ECCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 34654 466678899988654 58889888899999888633 2333446779999998766665
No 168
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=90.09 E-value=1.1 Score=32.18 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=51.4
Q ss_pred CCcEEEEEeeCcchHHHHHHHHHhHhCC--CCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 313 TGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 313 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.| ...+.+....||.+|.+.+.....- ......+..||+...+ .-.+.-+++|+.|.+.....||
T Consensus 11 ~g-~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 11 AG-EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp HT-EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred hC-CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 35 6778889999999999999888631 3366788889999988 2455566779999999888887
No 169
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=90.05 E-value=2.5 Score=29.72 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=43.3
Q ss_pred CCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 313 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
||+.+ ++..+.|+++|.+. .+.+.....+-.|+..+..+ .-++.-+++|+.|.+.....||
T Consensus 6 Ng~~~--~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQPM--QCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEccCC
Confidence 46544 45677899998865 45666677888899988632 2344457789999998777776
No 170
>PRK07440 hypothetical protein; Provisional
Probab=89.80 E-value=2.5 Score=30.18 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=48.9
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.|.|.+ ||+. .++....||.+|-. ..++++...-+-.||..+.-+ .-++.-+++|+.|.+..-..||
T Consensus 4 ~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 4 PITLQV---NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred ceEEEE---CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 466654 4654 56677889998875 457888888899999988733 3455567789999998776665
No 171
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=89.73 E-value=1.1 Score=30.86 Aligned_cols=64 Identities=23% Similarity=0.487 Sum_probs=52.4
Q ss_pred cCcEEEEEEecCCcHHHHHHhhhhcc---CCCcccceee-ecCccccCCccccccccccCceeeEEEE
Q 016849 237 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 300 (381)
Q Consensus 237 ~g~~~~~~v~~~~tV~~Lk~~i~~~~---~ip~~~q~L~-~~g~~l~d~~tl~~y~i~~~~tl~l~~~ 300 (381)
+|+...++.+++...--+.++-.+.. +-|++.-.|. -+|.+++-++...+||+..+-+++|.++
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 57778888888887777666655544 4688888887 7899999999999999999999998876
No 172
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=89.63 E-value=2.9 Score=31.12 Aligned_cols=61 Identities=11% Similarity=0.264 Sum_probs=45.2
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCC-----------CCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi-----------~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
...++++ ..||.+|.+.+.+.+.- ......+..||+....+.. .-+++|+.|.+.-+..||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4566775 89999999999988631 0123566779988765432 457789999999999887
No 173
>smart00455 RBD Raf-like Ras-binding domain.
Probab=89.24 E-value=1.2 Score=31.81 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=40.2
Q ss_pred EEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecC
Q 016849 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (381)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g 47 (381)
+.|-.++|++..+.+.|+.||.++=+++.++.|+.++.=.++..|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456689999999999999999999999999999999887777755
No 174
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=88.90 E-value=2.1 Score=31.35 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=34.7
Q ss_pred EEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCee
Q 016849 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125 (381)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~ 125 (381)
++.+.+++..+..+|.++|.++.++|++...|.|.-..
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 88999999999999999999999999999999887543
No 175
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=88.66 E-value=1.9 Score=31.81 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=47.1
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCC-CCeEEEEC---CE--EcCCCCcccc----cCCCCCCEEEEEEe
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLAD----YNIQKESTLHLVLR 376 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~-~~q~L~~~---g~--~L~d~~~L~~----~~i~~~~~i~l~~~ 376 (381)
.+|..+.+.+.++.+..+|++.|+++.++.. ....|.|- |. .|..+.-|.+ |.....++|.+.++
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v~ 81 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLVH 81 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEee
Confidence 5678899999999999999999999999976 77888883 22 2223333444 45556677777654
No 176
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=88.65 E-value=3.1 Score=31.11 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=43.0
Q ss_pred cEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEc----C-eec-cCCCcccccccccCCceeEEEee
Q 016849 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G-KQL-EDGRTLADYNIQKESTLHLVLRL 149 (381)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----g-~~L-~d~~tl~~~~i~~~~~i~l~~~~ 149 (381)
..++..++..|||..+...+.+.+.+ ..+-||.-. + ..| +.+.|+.+.++.+|..|.+-.+.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 46778899999999999999999999 666788632 2 345 45579999999999877766554
No 177
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=1.4 Score=45.00 Aligned_cols=181 Identities=18% Similarity=0.203 Sum_probs=98.8
Q ss_pred EEEEEecCCchHHHHHHHhhhhhCCCCCceEEEe----cCccc--CCCCcccccccCCCCEEEEEE--eec-cceeeeEE
Q 016849 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHLVL--RLR-GGMQIFVK 234 (381)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~----~g~~L--~d~~tL~~y~i~~~~~i~l~~--~~~-~~~~i~vk 234 (381)
.+.+.|+...++..+|+.+++..++|.+..++.. +|..+ .++.+|+.. .++.+|.+-+ ... +...+.+.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEEE
Confidence 5678899999999999999999999999888763 23333 456777653 4555555444 222 22222222
Q ss_pred ec----cC-----cEEEEEEecCCcHHHHHHhhhhcc------C--CCcccceeeecCccccCCccccccccccCceee-
Q 016849 235 TL----TG-----KTITLEVESSDTIDNVKAKIQDKE------G--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH- 296 (381)
Q Consensus 235 ~~----~g-----~~~~~~v~~~~tV~~Lk~~i~~~~------~--ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~- 296 (381)
.. +. -.....+..+.|++..|..+-.++ + +...+.++..++.+ .+++.+.+|.+--.+.=+
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~-~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGV-GPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCc-CCceEecCcchhhhhhhhh
Confidence 11 11 123455678899998887665443 2 33333333322111 223333333221111000
Q ss_pred ------E-------E-EEeecCeeeEEEeeC------CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE
Q 016849 297 ------L-------V-LRLRGGMQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348 (381)
Q Consensus 297 ------l-------~-~~~~~~m~I~v~~~~------g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~ 348 (381)
+ . -+....+.|++|.+. |....+.. ..+.+.|++.++++..|||.+..-..
T Consensus 1035 ~~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~L-d~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVNPFQEVLL-DANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred hHHHHHHHHHHhhcccCCCCccchhhheeccccceecCCceeEEe-cCcchHHHHHHHHHhcCCchhhhhhh
Confidence 0 0 011222345555432 11112222 35679999999999999999987643
No 178
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=88.26 E-value=1.3 Score=31.82 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=41.3
Q ss_pred EEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCe
Q 016849 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (381)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~ 48 (381)
+.|-.++|++-.+.|.|+.||.++=+++.++.|+.++.-.+++.|.
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~ 47 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGL 47 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence 4667899999999999999999999999999999999978877643
No 179
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=88.12 E-value=2.2 Score=36.87 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=63.5
Q ss_pred EEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE-EcC-----eec-cCCCcccccccccCCceeEEEeeecceeeEEEecc
Q 016849 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 161 (381)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~g-----~~L-~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~ 161 (381)
.....+++.||.++|.+++-..|.+++...|. |.| ..| +++..|..|...+|-.||++-.....+.= +.+
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~~~~---~~d 91 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQSISN---TED 91 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCcccccc---ccc
Confidence 44567889999999999999999999999885 655 345 45679999999999999987544332211 111
Q ss_pred -CcEEEEEec------CCchHHHHHHHhh
Q 016849 162 -GKTITLEVE------SSDTIDNVKAKIQ 183 (381)
Q Consensus 162 -g~~~~i~v~------~~~tV~~lK~~i~ 183 (381)
+..-..+++ .+++|...|++-.
T Consensus 92 ~s~veky~iSee~Y~qRtdSvr~~kk~~~ 120 (234)
T KOG3206|consen 92 ESIVEKYEISEEDYLQRTDSVRRFKKKHG 120 (234)
T ss_pred cccceeeecCHHHHhhhhHHHHHHHHHhc
Confidence 111223332 4678888886653
No 180
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=87.99 E-value=2.2 Score=31.08 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=37.2
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEEC
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 350 (381)
+.++. .|.++.+.++++.|..+|+.+|+++.+++.....|.|.
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 44444 67889999999999999999999999998888888885
No 181
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=87.68 E-value=3.1 Score=30.88 Aligned_cols=66 Identities=14% Similarity=0.269 Sum_probs=48.1
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|+|. .||+.+ ++.++.||++|-+. .++++...-+-.||..+.-+ .-+.+-+++|+.|.+..-..||
T Consensus 19 m~I~---VNG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr~-~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 19 ITIS---INDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPRS-EWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred EEEE---ECCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 4554 456544 45678889988765 47888888889999988533 4566668889999998776665
No 182
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=87.64 E-value=0.27 Score=45.40 Aligned_cols=71 Identities=25% Similarity=0.384 Sum_probs=53.3
Q ss_pred CeEEEEEccCC--cEEEEEEeCCCCHHHHHHHHHhHhC--CCCCCeEEEEcCeeccCCCccccccccc--CCceeEE
Q 016849 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQK--ESTLHLV 146 (381)
Q Consensus 76 ~~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~~~i~~--~~~i~l~ 146 (381)
++.+.||..+. +...+.+....||++||.......- --+.+|||+|.||.|.|...+++.-.+. ..+.||+
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlv 85 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLV 85 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHh
Confidence 45677777764 4577888888999999999877543 2246799999999999999999875533 3455555
No 183
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=87.47 E-value=1.8 Score=31.02 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=39.0
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECC--EEcCCC
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDG 357 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g--~~L~d~ 357 (381)
+.|.-++|+...+.+.|+.||.|.-.++.++.|+.++...++..| +.|.-+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~ 55 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWD 55 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TT
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCC
Confidence 456678999999999999999999999999999999988877543 355533
No 184
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=87.47 E-value=5.2 Score=34.69 Aligned_cols=73 Identities=27% Similarity=0.358 Sum_probs=53.2
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCC-eEEEE---CC---EEcCCCCcccccCCC-CCCEEEEEE
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AG---KQLEDGRTLADYNIQ-KESTLHLVL 375 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~L~~---~g---~~L~d~~~L~~~~i~-~~~~i~l~~ 375 (381)
++.+.|..++|.+..+.+++++|++++...++.+.|++... .-|.+ ++ ..++...++.+.... ....+++..
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~ 82 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRV 82 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEE
Confidence 45678888999999999999999999999999999995422 22333 12 346667777777665 345666655
Q ss_pred e
Q 016849 376 R 376 (381)
Q Consensus 376 ~ 376 (381)
|
T Consensus 83 r 83 (207)
T smart00295 83 K 83 (207)
T ss_pred E
Confidence 5
No 185
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=86.75 E-value=4.8 Score=28.40 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=44.3
Q ss_pred eCCcEEEEEeeCc-chHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 312 LTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 312 ~~g~~~~~~v~~~-~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.||+.+ ++..+ .||++|-+ ..++++...-+-.||..+..+ .-++.-+++|+.|.+..-..||
T Consensus 5 vNG~~~--~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 5 INGNQI--EVPESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred ECCEEE--EcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 346645 45555 67888765 467888888889999988744 3455567889999998666555
No 186
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=86.71 E-value=2 Score=31.99 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=36.8
Q ss_pred eEEEeccCcEEEEEecCCchHHHHHHHhhhhhCCCC---CceEEEe
Q 016849 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 197 (381)
Q Consensus 155 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~---~~q~L~~ 197 (381)
+.++...|+.+.+.+.++..+.+|++.|.+++|+.. ....|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 456778899999999999999999999999999876 3556666
No 187
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=85.59 E-value=7.3 Score=29.11 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=43.3
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE----CCE-EcCC-CCcccccCCCCCCEEEEEEecC
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGK-QLED-GRTLADYNIQKESTLHLVLRLR 378 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~----~g~-~L~d-~~~L~~~~i~~~~~i~l~~~~~ 378 (381)
.++..++..+||..++..+.+.+.| ...-||-- ++. .|.+ +.|+.+.||.+|-+|-+-.|-.
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~ 82 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNE 82 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--T
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeecc
Confidence 6777899999999999999999999 66677743 344 4654 4699999999999998877653
No 188
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=85.02 E-value=7.8 Score=27.48 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=45.2
Q ss_pred EEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 317 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
..++++...|++||-+. .|++++..-...||..+..+ .-++.-+++|+.|.++-...||
T Consensus 10 ~~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 10 KEVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 45677777999998654 68889989999999988744 2456667789999988666555
No 189
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=84.40 E-value=2.4 Score=30.46 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=41.5
Q ss_pred eEEeccCcEEEEEEecCCcHHHHHHhhhhccCCCcccceeeecCccccC
Q 016849 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280 (381)
Q Consensus 232 ~vk~~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d 280 (381)
.|-.++|+..++.+.+++|+.++-+..+++.++.+....|..+...++|
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~ 51 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMEN 51 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCC
Confidence 3567889999999999999999999999999999998888765544443
No 190
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=84.36 E-value=4 Score=29.51 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=42.6
Q ss_pred EEEEEecCCchHHHHHHHhhhhhCC----CCCceEEEecCcccCCCCcccccccCCCCEEEEEEeecc
Q 016849 164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (381)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~i----p~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~ 227 (381)
...++++...||.+|.+.+...++- ......+..+|+... .++-+++||+|.++...++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSG 79 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCC
Confidence 4567777789999999999887542 233456667887776 4567889999988865443
No 191
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.16 E-value=2.1 Score=39.67 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=46.9
Q ss_pred EEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE---CCEEc-----CCCCcccccCCCCCCEEEEE
Q 016849 318 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQL-----EDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 318 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~---~g~~L-----~d~~~L~~~~i~~~~~i~l~ 374 (381)
...+.-.-||.|+|.++..+.|+.+..++|++ +|+.- ..++.|..|+|++|+.+-+-
T Consensus 351 s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 351 SGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred ceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 44566678999999999999999999999998 45543 35678999999999987653
No 192
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=82.11 E-value=4.1 Score=27.71 Aligned_cols=47 Identities=19% Similarity=0.288 Sum_probs=35.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCcccc
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~ 58 (381)
|+|+| || -.+++..+.|+.++|+++... .-.++++|-+..++..|.+
T Consensus 1 M~I~v---N~--k~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~~L~e 47 (57)
T PF14453_consen 1 MKIKV---NE--KEIETEENTTLFELRKESKPD------ADIVILNGFPTKEDIELKE 47 (57)
T ss_pred CEEEE---CC--EEEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCccccCC
Confidence 78887 44 456788889999999998653 2378999999877666553
No 193
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=82.09 E-value=8.6 Score=26.74 Aligned_cols=58 Identities=12% Similarity=0.252 Sum_probs=39.8
Q ss_pred cCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEeec
Q 016849 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (381)
Q Consensus 161 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (381)
+|+.+.+ + ..|+.+|.+.. +++++...+..+++.+. .....+.-+++||.|.++..-.
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~ 63 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQ 63 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEecc
Confidence 5776665 3 35898888765 66665556668887775 3344567789999998875443
No 194
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=81.72 E-value=9.2 Score=27.98 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=38.7
Q ss_pred EEEeeC-cchHHHHHHHHHhHhC-----CCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 318 TLEVES-SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 318 ~~~v~~-~~tV~~lK~~i~~~~g-----i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.+++.+ ..||.+|++.+.+++. ......+..-|++...+ +.-+++|+.|-+.-+..||
T Consensus 18 ~~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 18 ALELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred eEEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 344543 5799999999998862 12233344456654433 3347779999999888887
No 195
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=80.98 E-value=2.4 Score=39.92 Aligned_cols=62 Identities=21% Similarity=0.325 Sum_probs=55.0
Q ss_pred CCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCC--CcccccCCCCCCEEEEE
Q 016849 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLV 374 (381)
Q Consensus 313 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~--~~L~~~~i~~~~~i~l~ 374 (381)
..+.+.++|..+.....|+..+....|++.+..-|+|++.++..+ .+|..||+..++.+.+-
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr 74 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALR 74 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEecc
Confidence 456678899999999999999999999999999999999999744 68999999999988754
No 196
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=80.57 E-value=8.8 Score=27.85 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=35.8
Q ss_pred EEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcC
Q 016849 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (381)
Q Consensus 78 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (381)
.+.++. +|....+.++++.|..+|+.+|..+++.+.....|.|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 344443 567888999999999999999999999887666776653
No 197
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=80.39 E-value=6.4 Score=28.14 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=35.9
Q ss_pred EEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecC
Q 016849 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (381)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g 47 (381)
+.|-.++|++-.+.|.|+.||.++=+++-++.|+.++.=.++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 466779999999999999999999999999999999875555444
No 198
>KOG4261 consensus Talin [Cytoskeleton]
Probab=80.19 E-value=2.1 Score=44.12 Aligned_cols=99 Identities=27% Similarity=0.358 Sum_probs=77.0
Q ss_pred EEEEEEecCCcHHHHHHhhhhccCC---Ccccceeee------cCccccCCccccccccccCceeeEEEEeecCeeeEEE
Q 016849 240 TITLEVESSDTIDNVKAKIQDKEGI---PPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 310 (381)
Q Consensus 240 ~~~~~v~~~~tV~~Lk~~i~~~~~i---p~~~q~L~~------~g~~l~d~~tl~~y~i~~~~tl~l~~~~~~~m~I~v~ 310 (381)
.-++..+|+.+|-|--+.|.+++.. -+..+-|+. +|--|+++++|.+|-+.+++++.-..+.. ...++
T Consensus 14 ~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r---~lkvr 90 (1003)
T KOG4261|consen 14 VKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQR---PLKVR 90 (1003)
T ss_pred eeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcc---cceee
Confidence 3456777999999888888877642 133333332 35558999999999999999997654432 46788
Q ss_pred eeCCcEEEEEeeCcchHHHHHHHHHhHhCCC
Q 016849 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP 341 (381)
Q Consensus 311 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~ 341 (381)
.++|..-++.|+.+.+|.+|.--|+.+-||.
T Consensus 91 mldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 91 MLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred ecccccceeeecccccHHHHHHHHHhccCcc
Confidence 8999999999999999999999999998874
No 199
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=79.40 E-value=7.3 Score=28.75 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=34.2
Q ss_pred ccCcEEEEEecCCchHHHHHHHhhhhhCCCC-CceEEEecCc
Q 016849 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGK 200 (381)
Q Consensus 160 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~-~~q~L~~~g~ 200 (381)
.+|..+.+.+.++.+..+|+++|.+++++.. ....|-|...
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dd 48 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDD 48 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECC
Confidence 4678899999999999999999999999865 5667777543
No 200
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=79.35 E-value=6.4 Score=28.37 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=37.0
Q ss_pred EEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE
Q 016849 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349 (381)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~ 349 (381)
.|..++|+..++.+.|++|+.|+-+..+.+.++.|+.-.|-.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrl 44 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRL 44 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEE
Confidence 456789999999999999999999999999999998765543
No 201
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=79.29 E-value=17 Score=25.78 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=39.8
Q ss_pred EEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEe
Q 016849 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (381)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~ 224 (381)
...++++...||.+|-+.+ ++++..-.+..+|+... .++-+++||.|.++..
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPV 66 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEcc
Confidence 5667788888999988766 67776667778888874 3666888999988754
No 202
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=79.19 E-value=9.2 Score=27.88 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=33.0
Q ss_pred eCCcEEE-EEeeCcchHHHHHHHHHhHhCCCCCCeEEEE
Q 016849 312 LTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349 (381)
Q Consensus 312 ~~g~~~~-~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~ 349 (381)
..|..+. +.+.++.|..+|+.+|++..+.+.....|.|
T Consensus 8 ~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y 46 (84)
T PF00564_consen 8 YGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKY 46 (84)
T ss_dssp ETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEE
T ss_pred ECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEe
Confidence 3445555 8999999999999999999999988899988
No 203
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=78.43 E-value=5 Score=38.25 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=54.9
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhC-CCCCCeEEEE--CCEEcCC-CCcccccCCCCCCEE
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIF--AGKQLED-GRTLADYNIQKESTL 371 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-i~~~~q~L~~--~g~~L~d-~~~L~~~~i~~~~~i 371 (381)
+...|.|+..+|+.....++.+.||.+++.-|...-. -+...|.|.. --++|.| +.||++.|+.+-..+
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 4467999999999999999999999999999998764 4455677664 5778865 569999998765443
No 204
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=78.36 E-value=15 Score=26.43 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=40.0
Q ss_pred EeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECC--EEcC
Q 016849 310 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE 355 (381)
Q Consensus 310 ~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g--~~L~ 355 (381)
--+||+...+.+.|+.||.|.-.++.++-|+.++.--++.-| ++|.
T Consensus 5 ~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~ 52 (73)
T cd01817 5 ILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLV 52 (73)
T ss_pred ECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccc
Confidence 357899999999999999999999999999999998887755 3554
No 205
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=77.72 E-value=1 Score=41.72 Aligned_cols=60 Identities=25% Similarity=0.387 Sum_probs=44.8
Q ss_pred CeeeEEEeeCCcEEEEE--eeCcchHHHHHHHHHhHhC-CC-CCCeEEEECCEEcCCCCccccc
Q 016849 304 GMQIFVKTLTGKTITLE--VESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADY 363 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~--v~~~~tV~~lK~~i~~~~g-i~-~~~q~L~~~g~~L~d~~~L~~~ 363 (381)
+...+++..+.+...++ .+..-||++||..++..+- -| +.+|||+|.|+.|.|...|.|.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~ 72 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW 72 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence 34556666665555554 4567799999999998872 33 3579999999999999888775
No 206
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=77.43 E-value=12 Score=27.78 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=36.0
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCE
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 352 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~ 352 (381)
.|.+. .+|.++.+.|+++.+..+|..+|.++.++. ....+.|...
T Consensus 4 kVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 4 RVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 34444 478899999999999999999999999995 5666766443
No 207
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=77.11 E-value=6.2 Score=28.21 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=46.4
Q ss_pred EEEEEEecCCcHHHHHHhhhhccCC--CcccceeeecCccccCCccccccccccCceeeEEEE
Q 016849 240 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (381)
Q Consensus 240 ~~~~~v~~~~tV~~Lk~~i~~~~~i--p~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~~~ 300 (381)
.....+.+..||.+|.+.+..+.+- ......+..||+...+ .-.++.+++||+|.+++.
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEES
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECC
Confidence 6678888999999999999887641 2345666789998887 467788999999988753
No 208
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=76.68 E-value=4 Score=38.45 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=58.6
Q ss_pred cCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCC--CCcccccccCCCCEEEEEEeeccc
Q 016849 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLRLRGG 228 (381)
Q Consensus 161 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d--~~tL~~y~i~~~~~i~l~~~~~~~ 228 (381)
..+.+++.+...-....++..++...|++.+.--++|+++.+.+ ..++..+|+..++++.+--+.+..
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~ 80 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDP 80 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCC
Confidence 55677888888889999999999999999999999999999965 478999999999999777665543
No 209
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=75.95 E-value=15 Score=31.67 Aligned_cols=38 Identities=32% Similarity=0.401 Sum_probs=34.3
Q ss_pred EEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCc
Q 016849 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (381)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~ 39 (381)
.|.|-.++|.+..+.++++.|+.++-+.+..+.||+..
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~ 42 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRES 42 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCcc
Confidence 46677899999999999999999999999999999653
No 210
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=75.31 E-value=5.9 Score=40.85 Aligned_cols=46 Identities=22% Similarity=0.432 Sum_probs=40.8
Q ss_pred EcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeecc
Q 016849 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (381)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~ 51 (381)
-+.++..+.+-+.++.|+..+.+.|....|+|...|.|+|.|....
T Consensus 320 s~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 320 SMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSH 365 (732)
T ss_pred eeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccc
Confidence 3456788999999999999999999999999999999999876543
No 211
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=75.27 E-value=5 Score=38.24 Aligned_cols=67 Identities=21% Similarity=0.352 Sum_probs=53.0
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHh-CCCCCCeEEE--EcCeecc-CCCcccccccccCCce
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLE-DGRTLADYNIQKESTL 143 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~-gip~~~q~L~--~~g~~L~-d~~tl~~~~i~~~~~i 143 (381)
-.|-|+..+|..+...++.+.||.+++..|...- +-+...+.|. |--+.|. ++.||++-|+.+...+
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 4688888999999999999999999999998754 4555566665 6678885 4679999998765443
No 212
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=75.13 E-value=11 Score=27.50 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=38.3
Q ss_pred cEEEEEecCCchHHHHHHHhhhhhC-CCC--CceEEEecCcccCCCCcccccccCCCCEEEEEEee
Q 016849 163 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (381)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~~~-ip~--~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (381)
....+++....||.+|.+.+..+.. +.. ..-.+..||+... .++-+++|++|.++..-
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~Ppv 79 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPI 79 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCC
Confidence 4567778888999999999976651 111 1123456776653 44567889999887543
No 213
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=74.84 E-value=17 Score=27.02 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=34.0
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCe
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~ 124 (381)
+.|.|. ..|....+.++++.+..+|.++|.+++++. ....+-|...
T Consensus 3 ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 344444 367789999999999999999999999984 3444444433
No 214
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=74.72 E-value=12 Score=37.20 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=53.6
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCC----CCCCeEEEE---CCEEcCCCCcccccCCCCCCEEEEEEec
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLVLRL 377 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi----~~~~q~L~~---~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 377 (381)
+.|...+ +...+-+..+..+.||...|-+..+= +.....+.. +|.+|+.+.||++.||.+|+++++..+.
T Consensus 5 VtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 5 VTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 5555444 44777888899999999999988764 222333333 8999999999999999999999998643
No 215
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=74.62 E-value=7.7 Score=28.85 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=36.1
Q ss_pred EEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccce
Q 016849 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (381)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~ 42 (381)
++-|-.++|.++++.+..+|+.+++=+.+..+.|+|.+-..
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 34566789999999999999999999999999999987743
No 216
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=74.30 E-value=12 Score=27.47 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=31.5
Q ss_pred eeCCcEEEEEeeC--cchHHHHHHHHHhHhCCCCCCeEEEE
Q 016849 311 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 349 (381)
Q Consensus 311 ~~~g~~~~~~v~~--~~tV~~lK~~i~~~~gi~~~~q~L~~ 349 (381)
+.+|.+..+.+++ +.+..+|++.|....+++ .+.|.|
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 4678889999999 779999999999999999 555555
No 217
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=73.71 E-value=12 Score=28.63 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=34.8
Q ss_pred EEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE
Q 016849 309 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349 (381)
Q Consensus 309 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~ 349 (381)
++...|.+..+.|+.+.|..+|+.++++..+++.. +.|.|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 34567999999999999999999999999999887 66666
No 218
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=73.48 E-value=30 Score=25.35 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=30.8
Q ss_pred CCcEEEEEeeCcchHHHHHHHHHhHhCCC--CCCeEEE
Q 016849 313 TGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 348 (381)
Q Consensus 313 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~q~L~ 348 (381)
.+...++.|++++|..++-..+.++++++ +.+..|+
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 37778999999999999999999999987 5555555
No 219
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=73.37 E-value=12 Score=27.00 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.8
Q ss_pred CCcEEEEEee-CcchHHHHHHHHHhHhCCCCCCeEEEEC
Q 016849 313 TGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA 350 (381)
Q Consensus 313 ~g~~~~~~v~-~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 350 (381)
+|..+.+.+. .+.|..+|+.+|+++.+.+.....+.|.
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 3677888888 9999999999999999998777777773
No 220
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=73.09 E-value=7.3 Score=28.34 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=32.3
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEEC
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 350 (381)
++.+.+.+..+..+|..+|+++...+++...|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 46778899999999999999999999999999994
No 221
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=72.60 E-value=1.2 Score=41.20 Aligned_cols=63 Identities=19% Similarity=0.462 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCcEEEEEEe---C--CCCHHHHHHHHHh----------HhCCCCCCeE-----EEEcCeeccCCCcccc
Q 016849 75 GGMQIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLAD 134 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~---~--~~tV~~lK~~i~~----------~~gip~~~q~-----L~~~g~~L~d~~tl~~ 134 (381)
..+.|++|......+.+.+. + +.+|.++|..+++ ..++|.+..+ |.|+-+.+.|.+||++
T Consensus 77 ~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e 156 (309)
T PF12754_consen 77 KSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAE 156 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHH
Confidence 45777777776665544432 2 5799999999999 8899998888 9999999999999998
Q ss_pred ccc
Q 016849 135 YNI 137 (381)
Q Consensus 135 ~~i 137 (381)
..=
T Consensus 157 ~l~ 159 (309)
T PF12754_consen 157 VLA 159 (309)
T ss_dssp ---
T ss_pred HHh
Confidence 753
No 222
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=71.39 E-value=4 Score=41.13 Aligned_cols=65 Identities=35% Similarity=0.519 Sum_probs=43.4
Q ss_pred CCcEEEEEeecCccHHHHHHHHhhh--cCCCCccc------eEEe----cCe-eccCC-------------Ccccccccc
Q 016849 9 TGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQ------RLIF----AGK-QLEDG-------------RTLADYNIQ 62 (381)
Q Consensus 9 ~g~~~~~~v~~~dtv~~~K~~i~~~--~~ip~~~q------~l~~----~g~-~L~d~-------------~tl~~~~i~ 62 (381)
++..+...|-..|||..+|+||-+. -+.|.+++ .|-+ .|+ .|.|. .||+.|+|.
T Consensus 200 ~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 279 (539)
T PF08337_consen 200 GSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVP 279 (539)
T ss_dssp SSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--
T ss_pred CCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCC
Confidence 3456788999999999999999876 44555553 2323 133 35542 689999999
Q ss_pred ccccceeeEee
Q 016849 63 KESTLHLVLRL 73 (381)
Q Consensus 63 ~~s~i~l~~~~ 73 (381)
+++++-++.+.
T Consensus 280 dga~vaLv~k~ 290 (539)
T PF08337_consen 280 DGATVALVPKQ 290 (539)
T ss_dssp TTEEEEEEES-
T ss_pred CCceEEEeecc
Confidence 99999988764
No 223
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=71.16 E-value=18 Score=34.08 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=47.8
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
.||+. +++.++.||.+|-+. .++++....+..||+.+.-+ .-.++-+++|+.|.+..-.-||.
T Consensus 5 VNGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEII~~VgGGs 67 (326)
T PRK11840 5 LNGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEIVHFVGGGS 67 (326)
T ss_pred ECCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHH-HcCccccCCCCEEEEEEEecCCC
Confidence 34654 556778899988754 58899999999999998633 34566678899999998777773
No 224
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=71.11 E-value=20 Score=27.17 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=32.4
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCC
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~ 342 (381)
.|.|-..+|...++.+..++||+||-..+..+..++.
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~ 40 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPS 40 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCC
Confidence 4556667788899999999999999999999998877
No 225
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=71.07 E-value=23 Score=26.15 Aligned_cols=61 Identities=11% Similarity=0.281 Sum_probs=40.7
Q ss_pred cEEEEEecCCchHHHHHHHhhhhhC-----C-C-----CCceEEEecCcccCCCCcccccccCCCCEEEEEEeecc
Q 016849 163 KTITLEVESSDTIDNVKAKIQDKEG-----I-P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (381)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~~~-----i-p-----~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~ 227 (381)
....++++ ..||.+|.+.+..+++ + . .....+..+|+..+.+.. ..+++|++|.++...++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG 87 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG 87 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence 34667776 8899999999987763 1 0 122455577776654432 56889999988865443
No 226
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=71.07 E-value=23 Score=25.66 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=40.5
Q ss_pred EEEEEecCC-chHHHHHHHhhhhhC-C-C-CCceEEEecCcccCCCCcccccccCCCCEEEEEEeec
Q 016849 164 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (381)
Q Consensus 164 ~~~i~v~~~-~tV~~lK~~i~~~~~-i-p-~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (381)
...+++... .||.+|.+.+..+.+ + . .....+..+++...+ +.-+++|++|.++..-+
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Ppvs 78 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVS 78 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCC
Confidence 456777766 899999999988764 1 1 122355577776663 56788899998875443
No 227
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=69.33 E-value=19 Score=34.46 Aligned_cols=70 Identities=23% Similarity=0.279 Sum_probs=54.4
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHh--CCCCCCeEEEEC----CEE--cCCCCcccccCCCCCCEEEEEE
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~--gi~~~~q~L~~~----g~~--L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
|.+.+|..+|. .-++++++++.+-|-.++-... +-.|++..+.-+ |.. +..++++.++|++.|..++|..
T Consensus 1 Mi~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCc-eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 45667777775 7899999999999988887776 456777776652 332 3467799999999999999876
No 228
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=68.88 E-value=9 Score=28.60 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=29.4
Q ss_pred EEeeC-cchHHHHHHHHHh-HhCCCCCCe----EEEECCEE----cCCCCcccccCCCCCCEEEEE
Q 016849 319 LEVES-SDTIDNVKAKIQD-KEGIPPDQQ----RLIFAGKQ----LEDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 319 ~~v~~-~~tV~~lK~~i~~-~~gi~~~~q----~L~~~g~~----L~d~~~L~~~~i~~~~~i~l~ 374 (381)
+.++. ..|+.+|-.+|-+ +.|+..... .++|.... -..+++|+++||.+|+.|.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 44453 5689999888654 566554222 23332221 123479999999999998763
No 229
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=68.07 E-value=91 Score=27.97 Aligned_cols=140 Identities=14% Similarity=0.201 Sum_probs=78.8
Q ss_pred ccccCCCCEEEEEEeeccceeeeEEeccCcEEEEEE----e-cCCcHHHHHHhhhhccCCCcccceeeecCccccCCccc
Q 016849 210 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV----E-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284 (381)
Q Consensus 210 ~y~i~~~~~i~l~~~~~~~~~i~vk~~~g~~~~~~v----~-~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl 284 (381)
+|-+.+||.|.+.+-..+...........-++.+.. . .+.|++++++.|+.++.-.
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~~------------------- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSKG------------------- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhhc-------------------
Confidence 477889999988876544433323333333333332 2 5789999999998864210
Q ss_pred cccccccCceeeEEEEeecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCC--C-e--EEEECCEE------
Q 016849 285 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--Q-Q--RLIFAGKQ------ 353 (381)
Q Consensus 285 ~~y~i~~~~tl~l~~~~~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~--~-q--~L~~~g~~------ 353 (381)
.|- .+-.+.+.+....+..++|-..-++.=.+.+.+..|+.++ |+..=|+.+. . . +...+|+.
T Consensus 62 -~~~--~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~a---i~~AGG~~~~~~~~~~i~~~~~g~~~~~~id 135 (239)
T TIGR03028 62 -GFV--KQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDV---LALAGGVTPDGADVITLVREREGKIFRKQID 135 (239)
T ss_pred -Ccc--cCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHH---HHHcCCCCccCCCeEEEEEecCCeEEEEEEE
Confidence 000 1112334333444567777766555556777777888875 4444455443 2 1 12235554
Q ss_pred ----cCCCCcccccCCCCCCEEEEE
Q 016849 354 ----LEDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 354 ----L~d~~~L~~~~i~~~~~i~l~ 374 (381)
+.+...-.++-+++|++|++-
T Consensus 136 l~~l~~~g~~~~ni~L~~GD~I~V~ 160 (239)
T TIGR03028 136 FPALFNPGGDNENILVAGGDIIYVD 160 (239)
T ss_pred HHHHHhcCCCcCCcEEcCCCEEEEc
Confidence 223334457778899998863
No 230
>KOG4261 consensus Talin [Cytoskeleton]
Probab=66.36 E-value=14 Score=38.45 Aligned_cols=99 Identities=26% Similarity=0.336 Sum_probs=78.3
Q ss_pred EEEEEecCCchHHHHHHHhhhhhCC---CCCceEEEe------cCcccCCCCcccccccCCCCEEEEEEeeccceeeeEE
Q 016849 164 TITLEVESSDTIDNVKAKIQDKEGI---PPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 234 (381)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~i---p~~~q~L~~------~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~~~i~vk 234 (381)
.-++.+.|+++|-+--..|.+++.- -+..+.|.. +|-.|+.+++|.+|-+.+++++...-+. ....+.
T Consensus 14 ~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~---r~lkvr 90 (1003)
T KOG4261|consen 14 VKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQ---RPLKVR 90 (1003)
T ss_pred eeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhc---ccceee
Confidence 3467788999999999889887642 144444432 3677899999999999999998766443 355688
Q ss_pred eccCcEEEEEEecCCcHHHHHHhhhhccCCC
Q 016849 235 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP 265 (381)
Q Consensus 235 ~~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip 265 (381)
+++|..-++.++...+|..|.-.|+.+-||-
T Consensus 91 mldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 91 MLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred ecccccceeeecccccHHHHHHHHHhccCcc
Confidence 8999999999999999999999999988763
No 231
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=66.22 E-value=14 Score=38.27 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=39.2
Q ss_pred ccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeec
Q 016849 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (381)
Q Consensus 83 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L 126 (381)
+.+...+.+.++++.|+..+++.|...+|+|...|.|+|.|...
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 45667788899999999999999999999999999999997543
No 232
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=66.11 E-value=27 Score=24.17 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=40.6
Q ss_pred cCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEeecc
Q 016849 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (381)
Q Consensus 161 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~ 227 (381)
+|+. ++++...||.+|.+.+ +++++...+..+|+....+ ...++-+++||+|.++....+
T Consensus 5 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~G 64 (65)
T cd00565 5 NGEP--REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGG 64 (65)
T ss_pred CCeE--EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence 4554 4445677899888776 5777777777888876442 233456889999988865443
No 233
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=65.88 E-value=40 Score=26.24 Aligned_cols=63 Identities=29% Similarity=0.353 Sum_probs=43.5
Q ss_pred CcEEEEEeecCccHHHHHHHHhhh----cC--CCCc-cceEEecCee--ccCCCcccccc-----ccccccceeeEe
Q 016849 10 GKTITLEVESSDTIDNVKAKIQDK----EG--IPPD-QQRLIFAGKQ--LEDGRTLADYN-----IQKESTLHLVLR 72 (381)
Q Consensus 10 g~~~~~~v~~~dtv~~~K~~i~~~----~~--ip~~-~q~l~~~g~~--L~d~~tl~~~~-----i~~~s~i~l~~~ 72 (381)
-.++++.+.+++|++++.+.+-++ .+ -+++ .-.|...|+. |..+..|.+|. +..+..+||.+.
T Consensus 28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~ 104 (108)
T smart00144 28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLM 104 (108)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEE
Confidence 467899999999999999887776 22 2333 4456666765 66777787775 334556777654
No 234
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=65.03 E-value=29 Score=25.11 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=29.3
Q ss_pred EEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcC
Q 016849 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (381)
Q Consensus 90 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (381)
.+.+.++.+..+|+.+|+.+++.+.....|.|..
T Consensus 15 ~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 15 IISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 4889999999999999999999997777777753
No 235
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=64.76 E-value=13 Score=27.67 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=36.6
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeE
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 346 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~ 346 (381)
++.|--++|.+..+++..+++..++-+.++.+.|+|.+.+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 45566788999999999999999999999999999988765
No 236
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=64.64 E-value=17 Score=26.72 Aligned_cols=54 Identities=19% Similarity=0.405 Sum_probs=42.4
Q ss_pred CcEEEEEEecCCcHHHHHHhhhhccCCCccccee-eecCccccCCccccccccccCceeeEEEE
Q 016849 238 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (381)
Q Consensus 238 g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L-~~~g~~l~d~~tl~~y~i~~~~tl~l~~~ 300 (381)
+..+.....+..||+++ -+.+|+|...--+ +.||+..+- +|.+++|+.+.+.+.
T Consensus 22 ~~~~~~~~~~~~tvkd~----IEsLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDV----IESLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYPV 76 (81)
T ss_pred CCceEEecCCCCcHHHH----HHHcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEec
Confidence 46778889999999999 5678999886544 478887654 478899999988764
No 237
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=64.62 E-value=39 Score=23.46 Aligned_cols=56 Identities=11% Similarity=0.161 Sum_probs=39.2
Q ss_pred cCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEe
Q 016849 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (381)
Q Consensus 161 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~ 224 (381)
+|+.+.+ .+..|+.+|-+. .++|+..-.+..++..+..+.-= .+ +++||.|.++..
T Consensus 6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~-~~-L~~gD~ieIv~~ 61 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWA-TK-LRDGARLEVVTA 61 (65)
T ss_pred CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhh-hh-cCCCCEEEEEee
Confidence 5665444 456788777654 48888888888999877543222 35 899999988754
No 238
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=64.52 E-value=45 Score=25.93 Aligned_cols=64 Identities=28% Similarity=0.297 Sum_probs=44.9
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHh------CCCCC-CeEEEECCE--EcCCCCcccccC-----CCCCCEEEEEEec
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKE------GIPPD-QQRLIFAGK--QLEDGRTLADYN-----IQKESTLHLVLRL 377 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~------gi~~~-~q~L~~~g~--~L~d~~~L~~~~-----i~~~~~i~l~~~~ 377 (381)
...+++.+++++|+.+|.+.+-.+. .-+++ +..|.-.|+ -|..+..|.+|. ++.|..++|++..
T Consensus 28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~ 105 (108)
T smart00144 28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMT 105 (108)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEe
Confidence 4679999999999999998887762 22233 455655665 366667777763 5678888887754
No 239
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=64.46 E-value=25 Score=26.48 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=44.4
Q ss_pred eCCcEEEEEee-----CcchHHHHHHHHHhHhCCCC-CCeEEEE---CCEE--cCCCCccccc-----CCCCCCEEEEEE
Q 016849 312 LTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPP-DQQRLIF---AGKQ--LEDGRTLADY-----NIQKESTLHLVL 375 (381)
Q Consensus 312 ~~g~~~~~~v~-----~~~tV~~lK~~i~~~~gi~~-~~q~L~~---~g~~--L~d~~~L~~~-----~i~~~~~i~l~~ 375 (381)
.+|..+-+.++ ++.+..+|+++|.+.+++++ ....|.| .|.. |.++.-|.++ .-....++.+.+
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v 86 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNPLRIDV 86 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCceEEEEE
Confidence 35666666666 47899999999999999998 6677777 3443 3333333332 333577888776
Q ss_pred ec
Q 016849 376 RL 377 (381)
Q Consensus 376 ~~ 377 (381)
.+
T Consensus 87 ~~ 88 (91)
T cd06398 87 TV 88 (91)
T ss_pred EE
Confidence 54
No 240
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=64.43 E-value=23 Score=26.14 Aligned_cols=52 Identities=29% Similarity=0.373 Sum_probs=37.7
Q ss_pred eEEEeeCCc----EEEEEeeCcchHHHHHHHHHhHhCC--CCCCeEEE-E---CC--EEcCCCC
Q 016849 307 IFVKTLTGK----TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI-F---AG--KQLEDGR 358 (381)
Q Consensus 307 I~v~~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gi--~~~~q~L~-~---~g--~~L~d~~ 358 (381)
|.|-..++. ..++.|.+++|+.++-.++.+++++ .+.+..|+ + +| +.|.++.
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E 68 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDE 68 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTS
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCC
Confidence 334444555 8999999999999999999999999 55556673 2 23 3566554
No 241
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=64.32 E-value=21 Score=25.62 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=38.8
Q ss_pred EEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCe
Q 016849 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (381)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~ 48 (381)
|-.+||.+-.+.+.|..||.++=.+.-++-|++++.=.++..|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 34689999999999999999999999999999998877776654
No 242
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=63.99 E-value=16 Score=37.62 Aligned_cols=205 Identities=17% Similarity=0.171 Sum_probs=109.6
Q ss_pred EEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE--E--cCeec--cCCCcccccccccCCceeEEE--ee-ecceeeEEE
Q 016849 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--F--AGKQL--EDGRTLADYNIQKESTLHLVL--RL-RGGMQIFVK 158 (381)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~--~g~~L--~d~~tl~~~~i~~~~~i~l~~--~~-~~~~~v~v~ 158 (381)
.+.+.|....++..+|..|++..++|.+..++. + +|..+ .++.||+.. .++.+|.+.+ .+ ++...+.|.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEEE
Confidence 367889999999999999999999999887776 2 23444 356677754 4555555543 11 122222222
Q ss_pred ec----cCc-----EEEEEecCCchHHHHHHHhhhhhC-CCC-------CceEEEec-----CcccCC-CCcccccccCC
Q 016849 159 TL----TGK-----TITLEVESSDTIDNVKAKIQDKEG-IPP-------DQQRLIFA-----GKQLED-GRTLADYNIQK 215 (381)
Q Consensus 159 ~~----~g~-----~~~i~v~~~~tV~~lK~~i~~~~~-ip~-------~~q~L~~~-----g~~L~d-~~tL~~y~i~~ 215 (381)
.+ +.+ .+..-+..+.|+++.|..+-.+.. |.. .+.|+..+ |+.+-| ..++.+..-..
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~~ 1035 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYNW 1035 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhhh
Confidence 22 111 123446788999999877655432 222 22222222 344433 33333322000
Q ss_pred C---------CEEEEEEeeccceeeeEEeccCc-----EEEEEEecCCcHHHHHHhhhhccCCCcccceee-ecCc----
Q 016849 216 E---------STLHLVLRLRGGMQIFVKTLTGK-----TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK---- 276 (381)
Q Consensus 216 ~---------~~i~l~~~~~~~~~i~vk~~~g~-----~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~-~~g~---- 276 (381)
. +.+ ...++.....++++.|.-. .+.-.+-+.+.+.+++.++.+--|||.+.-.+. .++.
T Consensus 1036 ~~~~~~qE~~deV-~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~~Kl~~~FPC~ 1114 (1203)
T KOG4598|consen 1036 CSHLYLQEITDEV-MIGKPGESLPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAITKLKEFFPCK 1114 (1203)
T ss_pred HHHHHHHHHHhhc-ccCCCCccchhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhhhhcccCCCcc
Confidence 0 001 0001112233444443321 222233456789999999999999999976655 2221
Q ss_pred ---cccCCccccccccccCceeeE
Q 016849 277 ---QLEDGRTLADYNIQKESTLHL 297 (381)
Q Consensus 277 ---~l~d~~tl~~y~i~~~~tl~l 297 (381)
.|+-...+.||... +||+.
T Consensus 1115 ~IS~Ld~~e~~~W~~~~--~TL~~ 1136 (1203)
T KOG4598|consen 1115 WISRLDMLENKVWTKDL--QTLYP 1136 (1203)
T ss_pred hhhhhhhhhccccccCc--ccccc
Confidence 24445555666443 35544
No 243
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=63.76 E-value=14 Score=29.29 Aligned_cols=56 Identities=21% Similarity=0.484 Sum_probs=40.4
Q ss_pred ecC-CchHHHHHHHhhhhh----CCCC------CceEEEec-----------------Cccc---CCCCcccccccCCCC
Q 016849 169 VES-SDTIDNVKAKIQDKE----GIPP------DQQRLIFA-----------------GKQL---EDGRTLADYNIQKES 217 (381)
Q Consensus 169 v~~-~~tV~~lK~~i~~~~----~ip~------~~q~L~~~-----------------g~~L---~d~~tL~~y~i~~~~ 217 (381)
|+. +.||.+|++.+.+.. |+|| +..++++. ...| +++.+|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 676 889999998888654 4554 33344332 1456 789999999999999
Q ss_pred EEEEEEe
Q 016849 218 TLHLVLR 224 (381)
Q Consensus 218 ~i~l~~~ 224 (381)
.|.++-.
T Consensus 102 EiSfF~~ 108 (122)
T PF10209_consen 102 EISFFNM 108 (122)
T ss_pred eeeeeCH
Confidence 9987754
No 244
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=63.58 E-value=20 Score=26.19 Aligned_cols=49 Identities=20% Similarity=0.464 Sum_probs=35.2
Q ss_pred chHHHHHHHHHhHhCCCCCCeEEEE--CCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 325 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 325 ~tV~~lK~~i~~~~gi~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
.+..||+.+.+++.+++.+..+|+. +|..++|+.-+..+ +..|..+.++
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL---p~nT~lm~L~ 71 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL---PDNTVLMLLE 71 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS---SSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC---CCCCEEEEEC
Confidence 6899999999999999987777766 89999877543332 2345555543
No 245
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=63.54 E-value=31 Score=25.39 Aligned_cols=53 Identities=19% Similarity=0.397 Sum_probs=41.9
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE-CCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~-~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
+..+.+.+++..||+++-+ ..|+|....-++. ||+...-+ |-+++|+.|.+.-
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 5678889999999998744 4799999998766 99987654 5566799988764
No 246
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=63.28 E-value=16 Score=27.74 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=38.2
Q ss_pred EEeeCcchHHHHHHHHHhHhCCCCCCeEEEEC-C-----E-EcCCCC---cc--cccCCCCCCEEEEEEecCCC
Q 016849 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G-----K-QLEDGR---TL--ADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 319 ~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~-g-----~-~L~d~~---~L--~~~~i~~~~~i~l~~~~~GG 380 (381)
+++....||.+|-+.+.+.+ |...-+++.. | - .|-|+. .+ .++-+++|+.|.+.....||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 34446779999999998877 3333334332 2 1 121222 23 35778899999999888777
No 247
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=63.11 E-value=41 Score=24.94 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=43.8
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEEC-------CEEcCCCCccc
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLA 361 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~-------g~~L~d~~~L~ 361 (381)
-|.|-..+|...++.|++..|+.++-+.+..+.+...+.-+-.+. .+.++|...+.
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vv 66 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVV 66 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHH
Confidence 356667889999999999999999999999999988877765553 34556665443
No 248
>PRK08453 fliD flagellar capping protein; Validated
Probab=63.01 E-value=40 Score=35.22 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=63.3
Q ss_pred eccCcEEEEEEecCCcHHHHHHhhhhcc-----------CCCcccceeeecCccccCCcccc------ccccccCceeeE
Q 016849 235 TLTGKTITLEVESSDTIDNVKAKIQDKE-----------GIPPDQQRLIFAGKQLEDGRTLA------DYNIQKESTLHL 297 (381)
Q Consensus 235 ~~~g~~~~~~v~~~~tV~~Lk~~i~~~~-----------~ip~~~q~L~~~g~~l~d~~tl~------~y~i~~~~tl~l 297 (381)
..+|++++++|.+..|+++|+.+|-+.. | ..+.++|++.+.....+..+. .-.+..|.--.+
T Consensus 134 ~~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~ 212 (673)
T PRK08453 134 YTQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLV 212 (673)
T ss_pred EECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCcCCCceEEEeccccccccCCcccccc
Confidence 4569999999999999999999999532 3 122477777777665544333 223333331112
Q ss_pred EEEeecCeeeEEEeeCCcEEEEEeeCcch--------HHHHHHHHHhHh
Q 016849 298 VLRLRGGMQIFVKTLTGKTITLEVESSDT--------IDNVKAKIQDKE 338 (381)
Q Consensus 298 ~~~~~~~m~I~v~~~~g~~~~~~v~~~~t--------V~~lK~~i~~~~ 338 (381)
-..-.....|.++..+|+.+.+.+....+ =+.|+..|.+..
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 261 (673)
T PRK08453 213 DGSGKGDLSLNLKDADGNMHTVPIMLELPESASIKQKNAAIQKAIEQAL 261 (673)
T ss_pred cccccccceeeeeccCCcccccccccccccccccccchHHHHHHHHHhh
Confidence 22224557899999999888766542111 115666665553
No 249
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=62.79 E-value=15 Score=37.15 Aligned_cols=64 Identities=36% Similarity=0.531 Sum_probs=43.9
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHh--CCC------CCCeEEEE--C--CE-EcCCC-------------CcccccCCCC
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF--A--GK-QLEDG-------------RTLADYNIQK 367 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~--gi~------~~~q~L~~--~--g~-~L~d~-------------~~L~~~~i~~ 367 (381)
+..+.++|-..+||.++|++|-+.. +.| +++.-|.+ + |+ .|.|. .||+.|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3457888889999999999998875 343 34444433 2 34 56543 5899999999
Q ss_pred CCEEEEEEec
Q 016849 368 ESTLHLVLRL 377 (381)
Q Consensus 368 ~~~i~l~~~~ 377 (381)
|+++-|+.+.
T Consensus 281 ga~vaLv~k~ 290 (539)
T PF08337_consen 281 GATVALVPKQ 290 (539)
T ss_dssp TEEEEEEES-
T ss_pred CceEEEeecc
Confidence 9999999875
No 250
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=62.56 E-value=13 Score=29.51 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=38.1
Q ss_pred cEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccc
Q 016849 315 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362 (381)
Q Consensus 315 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~ 362 (381)
+...+-|+.+.||+++...|..+.++++++.-|+.++..+..+.++++
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 444446999999999999999999999999666667866666666654
No 251
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=62.35 E-value=17 Score=25.14 Aligned_cols=57 Identities=16% Similarity=0.331 Sum_probs=40.7
Q ss_pred ccCcEEEEEEecCCcHHHHHHhhhhccCCCcccceeeecCccccCCccccccccccCceeeEEE
Q 016849 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (381)
Q Consensus 236 ~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~~ 299 (381)
.+|+.+ ++.++.|+.+|-. ..+++...-.+.+||..+...+ ..+.-+++||.|.++.
T Consensus 5 vNG~~~--~~~~~~tl~~lL~----~l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 5 LNGEPR--ELPDGESVAALLA----REGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVH 61 (66)
T ss_pred ECCeEE--EcCCCCCHHHHHH----hcCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEE
Confidence 456644 5567889998854 4677887777789988876543 3445589999998874
No 252
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=62.34 E-value=24 Score=27.37 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.3
Q ss_pred EEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCC
Q 016849 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (381)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~ 38 (381)
|+|-..+|.+-++.|.---+-.+||+++-+|.|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 678889999999999999999999999999999988
No 253
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=61.57 E-value=61 Score=23.68 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=32.8
Q ss_pred EEEEEcC-CCcEEEEEeecCccHHHHHHHHhhhcCCC-CccceEEe
Q 016849 2 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF 45 (381)
Q Consensus 2 ~i~~~~~-~g~~~~~~v~~~dtv~~~K~~i~~~~~ip-~~~q~l~~ 45 (381)
.||..+. +|..-++.|.+++|..+|-+.+.+|.++. .....-+|
T Consensus 3 kV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 3 RVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred EEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 3444442 46778899999999999999999999998 33444444
No 254
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=61.49 E-value=22 Score=35.34 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=51.3
Q ss_pred CcEEEEEEecCCcHHHHHHhhhhccCC------Ccccceee-ecCccccCCccccccccccCceeeEEEEe
Q 016849 238 GKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (381)
Q Consensus 238 g~~~~~~v~~~~tV~~Lk~~i~~~~~i------p~~~q~L~-~~g~~l~d~~tl~~y~i~~~~tl~l~~~~ 301 (381)
.+.+.+-+..+..|.+|.-.+.+..+- +.....|. .+|..++.++||.+.++.+|+.++|.+..
T Consensus 11 ~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 11 RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 455778888888999998888776542 23345666 78999999999999999999999999753
No 255
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=61.34 E-value=40 Score=23.23 Aligned_cols=59 Identities=15% Similarity=0.316 Sum_probs=39.2
Q ss_pred cCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEeec
Q 016849 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (381)
Q Consensus 161 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (381)
+|+.+. +....|+.+|.+.+ +++++...+..+|+.+..+ ...++-+++||.|.++....
T Consensus 4 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~ 62 (64)
T TIGR01683 4 NGEPVE--VEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVG 62 (64)
T ss_pred CCeEEE--cCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEecc
Confidence 455444 45667898888765 5667666777888776322 23445689999998876443
No 256
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.83 E-value=13 Score=34.57 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=45.3
Q ss_pred EEecCCchHHHHHHHhhhhhCCCCCceEEEec---Cc-----ccCCCCcccccccCCCCEEEEE
Q 016849 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GK-----QLEDGRTLADYNIQKESTLHLV 222 (381)
Q Consensus 167 i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~---g~-----~L~d~~tL~~y~i~~~~~i~l~ 222 (381)
.-+.-.-||.+++..+..+.|+.+.+++|++- |+ .++.+..|..|+|.+|+.+.+-
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 44566789999999999999999999999873 32 3445788889999999988654
No 257
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=60.82 E-value=12 Score=39.08 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=43.7
Q ss_pred CCcEEEEEeeC-cchHHHHHHHHHhHhCCCCCCeEEEE-CCEEcCCCCcccccC
Q 016849 313 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN 364 (381)
Q Consensus 313 ~g~~~~~~v~~-~~tV~~lK~~i~~~~gi~~~~q~L~~-~g~~L~d~~~L~~~~ 364 (381)
.|+..+++... ..|+++||.+|+.+.|+...++.++- +|..+..++.|+.|.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhc
Confidence 47777887774 66999999999999999999988765 677888888888875
No 258
>PRK01777 hypothetical protein; Validated
Probab=60.52 E-value=73 Score=24.21 Aligned_cols=65 Identities=8% Similarity=0.077 Sum_probs=41.4
Q ss_pred CeeeEEEeeC---CcEEEEEeeCcchHHHHHHHHHhHhCCCCC--C-----eEEEECCEEcCCCCcccccCCCCCCEEEE
Q 016849 304 GMQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKEGIPPD--Q-----QRLIFAGKQLEDGRTLADYNIQKESTLHL 373 (381)
Q Consensus 304 ~m~I~v~~~~---g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~--~-----q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 373 (381)
.|+|.|.... .....+++.+++||.++-... ||+.. . -.+.-+|+...-+.. +++|+.|.+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~d~~-----L~dGDRVeI 73 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKLTDV-----LRDGDRVEI 73 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCCCCc-----CCCCCEEEE
Confidence 3555555421 234677899999999986654 66555 2 245557887765444 455999988
Q ss_pred EEec
Q 016849 374 VLRL 377 (381)
Q Consensus 374 ~~~~ 377 (381)
.-++
T Consensus 74 yrPL 77 (95)
T PRK01777 74 YRPL 77 (95)
T ss_pred ecCC
Confidence 7554
No 259
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=59.17 E-value=23 Score=28.10 Aligned_cols=55 Identities=20% Similarity=0.470 Sum_probs=39.0
Q ss_pred EeC-CCCHHHHHHHHHhH----hCCCCCC------eEEEEc-----------------Ceec---cCCCcccccccccCC
Q 016849 93 VES-SDTIDNVKAKIQDK----EGIPPDQ------QRLIFA-----------------GKQL---EDGRTLADYNIQKES 141 (381)
Q Consensus 93 v~~-~~tV~~lK~~i~~~----~gip~~~------q~L~~~-----------------g~~L---~d~~tl~~~~i~~~~ 141 (381)
|+. +.||.+|++.+.+. -|+||-+ .++++. ...| +++.+|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 88999999988765 3666643 223321 1567 788999999999988
Q ss_pred ceeEEE
Q 016849 142 TLHLVL 147 (381)
Q Consensus 142 ~i~l~~ 147 (381)
.|-+.-
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 877653
No 260
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=58.92 E-value=94 Score=25.75 Aligned_cols=109 Identities=22% Similarity=0.358 Sum_probs=69.9
Q ss_pred EEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccc----cceeeEeec-CCeEEEEEccCCc
Q 016849 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES----TLHLVLRLR-GGMQIFVKTLTGK 87 (381)
Q Consensus 13 ~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s----~i~l~~~~~-~~~~i~v~~~~g~ 87 (381)
|+-..-.-+|.+.+=.++.+-+|| .|.+.+|..|+..- .|+...+. .-+-.+.-. ..+.+.|+. -
T Consensus 6 fP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v---G 75 (153)
T PF02505_consen 6 FPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVGGEEVELTVKV---G 75 (153)
T ss_pred echhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEECCEEEEEEEEE---e
Confidence 333444568999999999998887 68999999997522 33333222 222222222 245555542 2
Q ss_pred EEEEEEeC-CCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCccccc
Q 016849 88 TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135 (381)
Q Consensus 88 ~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~ 135 (381)
.+-+++.. .+.+..+++...+.+.++.+ +..|+-+....|++||
T Consensus 76 ri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 76 RIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 45677777 67777777777666543332 2359999999999998
No 261
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=57.39 E-value=36 Score=27.13 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=48.5
Q ss_pred ecCCeEEEEEccC---CcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCccccccc---ccCCceeEE
Q 016849 73 LRGGMQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI---QKESTLHLV 146 (381)
Q Consensus 73 ~~~~~~i~v~~~~---g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i---~~~~~i~l~ 146 (381)
.++.+.|.|+-.. .+.-.+-|+.+.||+++..-|..+.++++++.-|..++..+....++++..= .++..+++.
T Consensus 24 yPdrIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~ 103 (121)
T PTZ00380 24 YPGHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVS 103 (121)
T ss_pred CCCccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEE
Confidence 4556667775432 2333346899999999999999999999998333345555566667766421 234445554
Q ss_pred E
Q 016849 147 L 147 (381)
Q Consensus 147 ~ 147 (381)
.
T Consensus 104 Y 104 (121)
T PTZ00380 104 V 104 (121)
T ss_pred E
Confidence 4
No 262
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=57.05 E-value=31 Score=26.32 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=34.7
Q ss_pred EEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEe
Q 016849 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (381)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~ 45 (381)
++..+|.|-.+.|+.+.+..+++.|+.+..+++.+ ..+.|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 35679999999999999999999999999998876 45555
No 263
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=56.66 E-value=40 Score=25.10 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=31.9
Q ss_pred CchHHHHHHHhhh-hhCCCCC----ceEEEecCcc----cCCCCcccccccCCCCEEEEEEeec
Q 016849 172 SDTIDNVKAKIQD-KEGIPPD----QQRLIFAGKQ----LEDGRTLADYNIQKESTLHLVLRLR 226 (381)
Q Consensus 172 ~~tV~~lK~~i~~-~~~ip~~----~q~L~~~g~~----L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (381)
..|+.+|-++|.+ +.|+... ...++|.... -...++|+++||.+|+.+.+.--..
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~q 71 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFDQ 71 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETTT
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcCC
Confidence 4699999998865 5665331 3345554432 3347899999999999997775443
No 264
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=56.44 E-value=64 Score=23.88 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=41.0
Q ss_pred cCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEee
Q 016849 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (381)
Q Consensus 161 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (381)
+|+... ++...||.+|-+. .++++....+-.+|..+ .....+++-+++||.|.++-.-
T Consensus 24 NG~~~~--~~~~~tl~~LL~~----l~~~~~~vAVevNg~iV-pr~~w~~t~L~egD~IEIv~~V 81 (84)
T PRK06083 24 NDQSIQ--VDISSSLAQIIAQ----LSLPELGCVFAINNQVV-PRSEWQSTVLSSGDAISLFQAI 81 (84)
T ss_pred CCeEEE--cCCCCcHHHHHHH----cCCCCceEEEEECCEEe-CHHHcCcccCCCCCEEEEEEEe
Confidence 566544 4567788877665 47888777777888877 3444566678999999887543
No 265
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=56.11 E-value=29 Score=25.30 Aligned_cols=38 Identities=16% Similarity=0.351 Sum_probs=29.4
Q ss_pred chHHHHHHHHHhHhCCCCCCeEEE--ECCEEcCCCCcccc
Q 016849 325 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLAD 362 (381)
Q Consensus 325 ~tV~~lK~~i~~~~gi~~~~q~L~--~~g~~L~d~~~L~~ 362 (381)
.|.+||+.+.+++.++|....+|+ -+|..++|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc
Confidence 489999999999999976555554 48999987754433
No 266
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=55.80 E-value=17 Score=27.55 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=34.0
Q ss_pred EEecCCchHHHHHHHhhhhhCCCCCceEEEecCc-------ccCCC---Ccc--cccccCCCCEEEEEEeec
Q 016849 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDG---RTL--ADYNIQKESTLHLVLRLR 226 (381)
Q Consensus 167 i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~-------~L~d~---~tL--~~y~i~~~~~i~l~~~~~ 226 (381)
++.+..+||.++-+.+...+ |....+++..+. .|-++ +.+ .++-+++||+|.++....
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~ 92 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLH 92 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCC
Confidence 34445679999999998776 233333332221 12122 223 357789999998886544
No 267
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=55.75 E-value=44 Score=24.58 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=27.1
Q ss_pred ccCCcEEEEEEeC--CCCHHHHHHHHHhHhCCC
Q 016849 83 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIP 113 (381)
Q Consensus 83 ~~~g~~~~l~v~~--~~tV~~lK~~i~~~~gip 113 (381)
+.+|..+.+.+++ +.+..+|++.++..++++
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 3567788888988 679999999999999998
No 268
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=55.56 E-value=25 Score=25.32 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=29.7
Q ss_pred chHHHHHHHHHhHhCCCCCCeEEE--ECCEEcCCCCcccc
Q 016849 325 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLAD 362 (381)
Q Consensus 325 ~tV~~lK~~i~~~~gi~~~~q~L~--~~g~~L~d~~~L~~ 362 (381)
.|.++|+.+.+++.+++....+|+ -+|..++|+.-+..
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t 58 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT 58 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc
Confidence 489999999999999996555554 48999988754443
No 269
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=55.28 E-value=48 Score=23.75 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=28.9
Q ss_pred CcEEEEEEe-CCCCHHHHHHHHHhHhCCCCCCeEEEEc
Q 016849 86 GKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA 122 (381)
Q Consensus 86 g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (381)
|....+.+. .+.|..+|+.+|.++++.+.....+.|.
T Consensus 9 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 9 GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 566777888 8999999999999999987644444443
No 270
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=54.86 E-value=69 Score=22.21 Aligned_cols=59 Identities=8% Similarity=0.127 Sum_probs=38.1
Q ss_pred cCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEeec
Q 016849 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (381)
Q Consensus 161 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (381)
+|+.+.+ ....|+.+|.+.+ +.+.....+..+++.+.. ...+.+-+++||.|.++..-.
T Consensus 6 Ng~~~~~--~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~ 64 (66)
T PRK08053 6 NDQPMQC--AAGQTVHELLEQL----NQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIA 64 (66)
T ss_pred CCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEcc
Confidence 5665444 5667898888654 555555666788877742 223444688999998875443
No 271
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=54.71 E-value=30 Score=25.18 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.2
Q ss_pred EEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcC
Q 016849 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (381)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (381)
++.+.+.+..+..+|...|.++...+++.-.|.|.-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 567788999999999999999999999999998863
No 272
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=53.87 E-value=49 Score=24.43 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=35.6
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCC--CCeEEE--E-CC--EEcCCC
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI--F-AG--KQLEDG 357 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~--~~q~L~--~-~g--~~L~d~ 357 (381)
.++...++.|.+++|+.++-..+.++.+++. ....|+ . +| +.|.++
T Consensus 13 ~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~ 65 (90)
T smart00314 13 PGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDD 65 (90)
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCC
Confidence 3477899999999999999999999999975 455554 2 45 456654
No 273
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=53.79 E-value=32 Score=26.67 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=28.4
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCC
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~ 342 (381)
|++-..+|.+..++|..-.+-.++|.++-.++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 556678999999999999999999999999999988
No 274
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=52.46 E-value=25 Score=26.01 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=37.9
Q ss_pred EEeeCcchHHHHHHHHHhHhCCCC-------CCeEEEECCE-EcC------CCCcccccCCCCCCEEEEE
Q 016849 319 LEVESSDTIDNVKAKIQDKEGIPP-------DQQRLIFAGK-QLE------DGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 319 ~~v~~~~tV~~lK~~i~~~~gi~~-------~~q~L~~~g~-~L~------d~~~L~~~~i~~~~~i~l~ 374 (381)
++++++.|.++|-+.+++...+.. ..-.|++.+- .|+ =+++|.++ +.+|..|.++
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 578999999999999999854433 3334444332 122 14789999 8999988875
No 275
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=52.12 E-value=40 Score=24.93 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=31.5
Q ss_pred EEEEEc-CCCcEEEEEeecCccHHHHHHHHhhhcCCCCc
Q 016849 2 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (381)
Q Consensus 2 ~i~~~~-~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~ 39 (381)
+||... .++..-++.|.+++|+.+|=..+.+|.+++.+
T Consensus 6 rV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 6 RVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred EEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 455544 45778889999999999999999999999753
No 276
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=51.44 E-value=13 Score=28.30 Aligned_cols=23 Identities=48% Similarity=0.882 Sum_probs=18.8
Q ss_pred EEEEcCeeccCCCcccccccccCC
Q 016849 118 RLIFAGKQLEDGRTLADYNIQKES 141 (381)
Q Consensus 118 ~L~~~g~~L~d~~tl~~~~i~~~~ 141 (381)
.|.|+|++|..+.+|++| +..+.
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNE 25 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNE 25 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCc
Confidence 578999999999999999 43333
No 277
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=51.11 E-value=2.4e+02 Score=27.36 Aligned_cols=175 Identities=15% Similarity=0.234 Sum_probs=98.2
Q ss_pred ccccccccCCceeEEEeeecceee-------------EEEeccCcEEEEE----ec-CCchHHHHHHHhhhhhCCCCCce
Q 016849 132 LADYNIQKESTLHLVLRLRGGMQI-------------FVKTLTGKTITLE----VE-SSDTIDNVKAKIQDKEGIPPDQQ 193 (381)
Q Consensus 132 l~~~~i~~~~~i~l~~~~~~~~~v-------------~v~~~~g~~~~i~----v~-~~~tV~~lK~~i~~~~~ip~~~q 193 (381)
-.+|-|..|++|.+.+--...+.. .| ..+|.. .+. |. ...|+.++++.|.++..
T Consensus 82 ~~~Y~igpGDvL~I~V~~~peL~~~~~~~~~~~~~g~~V-~~dG~I-~~P~vG~V~vaG~T~~e~~~~I~~~L~------ 153 (379)
T PRK15078 82 NYEYRVGPGDVLNVTVWDHPELTTPAGQYRSASDTGNWV-HADGTI-FYPYIGKVHVAGKTVTEIRSDITGRLA------ 153 (379)
T ss_pred CCCcEECCCCEEEEEEecCcccccccccccccccCCCEE-CCCCeE-eeccCceEEECCCCHHHHHHHHHHHHH------
Confidence 346889999999887732222111 12 223332 111 11 35689999999987752
Q ss_pred EEEecCcccCCCCcccccccCCCCEEEEEEeeccceeeeEEeccCcEEEEEEec-CCcHHHHHHhhhhccCCCcc----c
Q 016849 194 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEGIPPD----Q 268 (381)
Q Consensus 194 ~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~~~i~vk~~~g~~~~~~v~~-~~tV~~Lk~~i~~~~~ip~~----~ 268 (381)
.|- ....+.+.+.......++|...-.+.-.+.+.+ ..|+.++ |...-|+... .
T Consensus 154 ----------------~~~--~~PqV~V~v~~~~s~~V~V~GeV~~PG~~~l~~~~~tllda---Ia~AGG~~~~a~~~~ 212 (379)
T PRK15078 154 ----------------KYI--ESPQVDVNIAAFRSQKAYVTGEVNKSGQQAITNVPLTILDA---INAAGGLTDDADWRN 212 (379)
T ss_pred ----------------Hhc--cCCeEEEEEccCCceEEEEEceecCCeEEEecCCCccHHHH---HHHccCCCcccccce
Confidence 111 112233343333445566655545555566654 4576665 4444454332 1
Q ss_pred ceeeecCcc--------ccCCccccccccccCceeeEEEEeecCeeeEEEeeCCcEEEEEee-CcchHHHHHHHHHhH
Q 016849 269 QRLIFAGKQ--------LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDK 337 (381)
Q Consensus 269 q~L~~~g~~--------l~d~~tl~~y~i~~~~tl~l~~~~~~~m~I~v~~~~g~~~~~~v~-~~~tV~~lK~~i~~~ 337 (381)
-.|.-+|+. +..+..-.+.-+++||.|++-.. ....++|...-++.-.+.+. ++.|+.|.-.+.-..
T Consensus 213 V~l~R~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~~--~~~~v~V~GeV~~Pg~~~~~~~~~TL~~Al~~AGGl 288 (379)
T PRK15078 213 VVLTHNGKEERISLQALMQNGDLSQNRLLYPGDILYVPRN--DDLKVFVMGEVKKQSTLKMDRSGMTLTEALGNAEGI 288 (379)
T ss_pred EEEEECCeEEEEEHHHHHhcCCcccCceeCCCCEEEECCC--CCcEEEEeeecccceEEecCCCCCCHHHHHHhcCCC
Confidence 223344444 22233345666999999988542 33578888877777888884 688998876664433
No 278
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=50.91 E-value=62 Score=25.19 Aligned_cols=38 Identities=5% Similarity=0.198 Sum_probs=32.9
Q ss_pred EEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeec
Q 016849 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (381)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L 126 (381)
-.+.+++++|++.+...+....+++++++.++|-+.-.
T Consensus 47 ~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 47 SKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 46789999999999999999999999999988765443
No 279
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=50.87 E-value=21 Score=25.36 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=31.7
Q ss_pred chHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEE
Q 016849 325 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 373 (381)
Q Consensus 325 ~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 373 (381)
.|+++|....++++|++ ..-.+.-+|-+++|=..+. +|+.|++
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~IR-----DgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDVIR-----DGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEEEE-----cCCEEEE
Confidence 79999999999999997 4444555676666554444 4777775
No 280
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=50.59 E-value=30 Score=26.77 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=33.2
Q ss_pred EeeCcchHHHHHHHHHhHhCCCCCC-eEEEECCEEcCCCCccccc
Q 016849 320 EVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 363 (381)
Q Consensus 320 ~v~~~~tV~~lK~~i~~~~gi~~~~-q~L~~~g~~L~d~~~L~~~ 363 (381)
=|..+.||+++...|..+..+++++ .-|+.++..+..+.++++.
T Consensus 38 Lvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 38 LVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred EEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHH
Confidence 3789999999999999999998876 4455577666777777653
No 281
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=48.83 E-value=16 Score=27.73 Aligned_cols=27 Identities=41% Similarity=0.779 Sum_probs=21.7
Q ss_pred eEEecCeeccCCCcccccccccccccee
Q 016849 42 RLIFAGKQLEDGRTLADYNIQKESTLHL 69 (381)
Q Consensus 42 ~l~~~g~~L~d~~tl~~~~i~~~s~i~l 69 (381)
.|.|+|+.|.++.+|.|| +-.|..-.+
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKi 29 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKI 29 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeE
Confidence 589999999999999999 655554333
No 282
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=48.68 E-value=7.8 Score=37.02 Aligned_cols=51 Identities=35% Similarity=0.569 Sum_probs=45.5
Q ss_pred eeCCcEEEEEee-CcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCccc
Q 016849 311 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361 (381)
Q Consensus 311 ~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~ 361 (381)
..+|.+..+.+. .+..+..+|.++....+|++..|.+.+.|..|.|+.+++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 577888888888 788999999999999999999999999999999885543
No 283
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=48.49 E-value=46 Score=24.36 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=34.6
Q ss_pred eeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE
Q 016849 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349 (381)
Q Consensus 311 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~ 349 (381)
..+|.+.-+.+...-|-+.|+++|+..+++|+...-+.|
T Consensus 6 ~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 6 SFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred EeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 456778888888888999999999999999998888888
No 284
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=47.93 E-value=87 Score=24.04 Aligned_cols=71 Identities=23% Similarity=0.398 Sum_probs=43.8
Q ss_pred eeeEEEee-CCcEEEEEeeCcchHHHHHHHHHhHh--CCCCC----CeEEEECCE--EcCCCCcccccC-----CCCCCE
Q 016849 305 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKE--GIPPD----QQRLIFAGK--QLEDGRTLADYN-----IQKEST 370 (381)
Q Consensus 305 m~I~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~--gi~~~----~q~L~~~g~--~L~d~~~L~~~~-----i~~~~~ 370 (381)
+.|.|... .+..+++.++.+.|+.+|.+.+-.+. +..+. +..|.-.|+ .|..+..|.+|. +..+-.
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 34455544 56789999999999999999888772 22222 456655565 466777888873 345556
Q ss_pred EEEEE
Q 016849 371 LHLVL 375 (381)
Q Consensus 371 i~l~~ 375 (381)
++|++
T Consensus 97 ~~L~L 101 (106)
T PF00794_consen 97 PHLVL 101 (106)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 66654
No 285
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=47.78 E-value=1.3e+02 Score=23.13 Aligned_cols=72 Identities=22% Similarity=0.387 Sum_probs=45.3
Q ss_pred CeEEEEEcc-CCcEEEEEEeCCCCHHHHHHHHHhH--hCCCCC----CeEEEEcCe--eccCCCcccccc-----cccCC
Q 016849 76 GMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD----QQRLIFAGK--QLEDGRTLADYN-----IQKES 141 (381)
Q Consensus 76 ~~~i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~--~gip~~----~q~L~~~g~--~L~d~~tl~~~~-----i~~~~ 141 (381)
.+.|.|... .+..+++.++.+.|+.++.+.+-.+ .+..+. +-.|--.|+ -|..+..|.+|. +..+.
T Consensus 16 ~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~ 95 (106)
T PF00794_consen 16 KIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGK 95 (106)
T ss_dssp EEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT-
T ss_pred eEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCC
Confidence 455666655 4667999999999999999998766 222222 445666674 467788888884 45666
Q ss_pred ceeEEE
Q 016849 142 TLHLVL 147 (381)
Q Consensus 142 ~i~l~~ 147 (381)
.++|.+
T Consensus 96 ~~~L~L 101 (106)
T PF00794_consen 96 DPHLVL 101 (106)
T ss_dssp -EEEEE
T ss_pred CcEEEE
Confidence 666654
No 286
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=47.13 E-value=1.7e+02 Score=24.46 Aligned_cols=139 Identities=17% Similarity=0.153 Sum_probs=72.3
Q ss_pred cccCCCCEEEEEEeeccceeeeEEeccCcEEEEEE-----ecCCcHHHHHHhhhhccCCCcccceeeecCccccCCcccc
Q 016849 211 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV-----ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285 (381)
Q Consensus 211 y~i~~~~~i~l~~~~~~~~~i~vk~~~g~~~~~~v-----~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~ 285 (381)
|-+.+||.+.+.+-..+.....+.....-++.+.. -.+.|++++++.|++++.= . +.
T Consensus 1 Y~l~pGD~l~i~v~~~~~~~~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~------~------~~------ 62 (165)
T TIGR03027 1 YVIGPGDSLNINVWRNPELSGSVPVRPDGKITTPLVGDLVASGKTPTQLARDIEEKLAK------Y------VR------ 62 (165)
T ss_pred CCcCCCCEEEEEEcCCcccccceEECCCCeEeecccCeEEECCCCHHHHHHHHHHHHHH------h------cc------
Confidence 45677888877775544433333333333333332 2577999999999987630 0 00
Q ss_pred ccccccCceeeEEE-EeecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCC----CCeEEEE--CCE--Ec--
Q 016849 286 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP----DQQRLIF--AGK--QL-- 354 (381)
Q Consensus 286 ~y~i~~~~tl~l~~-~~~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~----~~q~L~~--~g~--~L-- 354 (381)
.+.-++.+.. ....+..|+|-..-.+.-.+.+.++.|+.++-.. .-|+.. ....+.- +|+ ..
T Consensus 63 ----~p~v~V~v~~~~~~~~~~V~V~GeV~~PG~y~~~~~~tl~~ai~~---AGG~~~~a~~~~v~i~R~~~~~~~~~~i 135 (165)
T TIGR03027 63 ----NPVVTVIVTGFIGPFSEQIRVVGAAANPQALPYREGMTLLDVMIA---VGGLTDFADGNRAVIVRTVDGEQKQISV 135 (165)
T ss_pred ----CCeEEEEEeecccCCCcEEEEEEEeCCCceeeeCCCCcHHHHHHH---cCCCCcccCCCeEEEEECCCCceEEEEE
Confidence 1111222211 0112345666654444445666788887776544 444443 2334443 232 11
Q ss_pred ------CCCCcccccCCCCCCEEEEE
Q 016849 355 ------EDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 355 ------~d~~~L~~~~i~~~~~i~l~ 374 (381)
.+...=.+.-+++|++|++-
T Consensus 136 dl~~l~~~g~~~~n~~L~~gD~I~Vp 161 (165)
T TIGR03027 136 RLKDLIKDGDVTANVELKPGDVLIIP 161 (165)
T ss_pred EHHHHhhcCCccCCceeCCCCEEEEe
Confidence 11222245668899999874
No 287
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=46.61 E-value=73 Score=23.58 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=38.6
Q ss_pred EEEeCCCCHHHHHHHHHhHhCCC-------CCCeEEEEcCe-ec------cCCCcccccccccCCceeEEE
Q 016849 91 LEVESSDTIDNVKAKIQDKEGIP-------PDQQRLIFAGK-QL------EDGRTLADYNIQKESTLHLVL 147 (381)
Q Consensus 91 l~v~~~~tV~~lK~~i~~~~gip-------~~~q~L~~~g~-~L------~d~~tl~~~~i~~~~~i~l~~ 147 (381)
++++++.|+.+|-+.+.++-.+. .....|++.+- .| .-+++|++. +.+|..|.+.-
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 57899999999999998874333 23344555442 12 235789999 89998888764
No 288
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.49 E-value=37 Score=30.93 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=55.1
Q ss_pred eeeeEEeccCcEEEEEEecCCcHHHHHHhhhhccCCCcccceee--ecCccc---cCCccccccccccCceeeEE
Q 016849 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 298 (381)
Q Consensus 229 ~~i~vk~~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~--~~g~~l---~d~~tl~~y~i~~~~tl~l~ 298 (381)
-.+.++..+|.+++-+.++..|...++.-++.+.+...+-+.|. |--..+ +..++|...++-+.++|.+.
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil~ 285 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLILE 285 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheecc
Confidence 45678889999999999999999999999999988766544544 434444 33788888999998888664
No 289
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=45.69 E-value=1.2e+02 Score=22.44 Aligned_cols=61 Identities=23% Similarity=0.375 Sum_probs=44.0
Q ss_pred EEEEEeeCcchHHHHHHHHHhHh-C--CCC--C-CeEEEECC--EEcCCCCcccccCCCCCCEEEEEEe
Q 016849 316 TITLEVESSDTIDNVKAKIQDKE-G--IPP--D-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~-g--i~~--~-~q~L~~~g--~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
...+.|+..+|+.++=++++... | +++ . ..++.++| +.+..+.++++-||.+-..|.+...
T Consensus 16 ~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 16 LQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 45678999999999999998875 4 332 2 45677888 8999999999999999998887654
No 290
>PRK07440 hypothetical protein; Provisional
Probab=45.28 E-value=46 Score=23.60 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=40.6
Q ss_pred ccCcEEEEEEecCCcHHHHHHhhhhccCCCcccceeeecCccccCCccccccccccCceeeEEE
Q 016849 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (381)
Q Consensus 236 ~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~~ 299 (381)
.+|+. .++.+..|+.+|-+ ..++++..-.+.+||..+..+ ...++-+.+||.|.++.
T Consensus 9 vNG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 9 VNGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVT 65 (70)
T ss_pred ECCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEE
Confidence 45665 45567889998854 556777777788999988633 34556689999998763
No 291
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=44.89 E-value=38 Score=25.57 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=33.2
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEE-EECCE
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK 352 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L-~~~g~ 352 (381)
...+++.|++..|=.|+|+.|+..+|+++...+- ...|+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk 59 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGK 59 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCc
Confidence 5689999999999999999999999999988763 34444
No 292
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=44.81 E-value=34 Score=26.85 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=40.0
Q ss_pred EEEeeCcchHHHHHHHHHhHhCCCCCCeE-EEECCEEcCCCCccccc---CCCCCCEEEEEEe
Q 016849 318 TLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLADY---NIQKESTLHLVLR 376 (381)
Q Consensus 318 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q~-L~~~g~~L~d~~~L~~~---~i~~~~~i~l~~~ 376 (381)
.+-|+.+.||+++...|.....++++.-. |+.++.....+.++++. .=.++--|++...
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Ys 106 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYS 106 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEEe
Confidence 44599999999999999999999988854 44466544555555432 2223445666654
No 293
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=44.22 E-value=54 Score=23.20 Aligned_cols=51 Identities=16% Similarity=0.355 Sum_probs=38.2
Q ss_pred EEEecCCcHHHHHHhhhhccCCCcccceeeecCccccCCccccccccccCceeeEE
Q 016849 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (381)
Q Consensus 243 ~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~ 298 (381)
+++.+..|+.+| .+..+++........||..+..+ .-.++-++.||.+.++
T Consensus 12 ~e~~~~~tv~dL----L~~l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv 62 (68)
T COG2104 12 VEIAEGTTVADL----LAQLGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVV 62 (68)
T ss_pred EEcCCCCcHHHH----HHHhCCCCceEEEEECCEEccch-hhhhccccCCCEEEEE
Confidence 455566899999 56678888888888999988643 3345568888888775
No 294
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=44.05 E-value=55 Score=23.85 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=29.5
Q ss_pred chHHHHHHHHHhHhCCCCCCeEE--EECCEEcCCCCcccc
Q 016849 325 DTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLAD 362 (381)
Q Consensus 325 ~tV~~lK~~i~~~~gi~~~~q~L--~~~g~~L~d~~~L~~ 362 (381)
.+.+||+.+.++..+++....+| .-+|..++++.-+..
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~ 60 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT 60 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh
Confidence 48999999999999998655544 558999987754433
No 295
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.44 E-value=43 Score=24.37 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=31.1
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~ 348 (381)
.+.+++.|++..|=.++|+.|+..+|+.+...+-.
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 35899999999999999999999999998877643
No 296
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=42.04 E-value=46 Score=24.40 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=28.9
Q ss_pred chHHHHHHHHHhHhCCCCC----CeEEEECCEEcCCCCcccc
Q 016849 325 DTIDNVKAKIQDKEGIPPD----QQRLIFAGKQLEDGRTLAD 362 (381)
Q Consensus 325 ~tV~~lK~~i~~~~gi~~~----~q~L~~~g~~L~d~~~L~~ 362 (381)
.|.++|+.+.++..+++.. ...|.-+|..++|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~t 62 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLC 62 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhh
Confidence 4899999999999999843 3345558999988754443
No 297
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=41.79 E-value=36 Score=35.80 Aligned_cols=63 Identities=17% Similarity=0.358 Sum_probs=49.0
Q ss_pred cCcEEEEEecCC-chHHHHHHHhhhhhCCCCCceEEEe-cCcccCCCCcccccccC--CCCEEEEEE
Q 016849 161 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQ--KESTLHLVL 223 (381)
Q Consensus 161 ~g~~~~i~v~~~-~tV~~lK~~i~~~~~ip~~~q~L~~-~g~~L~d~~tL~~y~i~--~~~~i~l~~ 223 (381)
.|..++++.+.. .|+.+||..|++..|+....|.|+- +|..+..++.+..|.-. +-+.|+++-
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFn 69 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFN 69 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEee
Confidence 477788887764 5999999999999999998888874 56778889999998742 344555553
No 298
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=41.04 E-value=12 Score=35.76 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=43.6
Q ss_pred ccCCcEEEEEEe-CCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcc
Q 016849 83 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (381)
Q Consensus 83 ~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl 132 (381)
..+|....+.+. .+..+..+|.++.+..++++..|.+.+.|..|.|+.++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 456788887777 67889999999999999999999999999999988444
No 299
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=40.83 E-value=55 Score=25.48 Aligned_cols=38 Identities=8% Similarity=0.208 Sum_probs=33.1
Q ss_pred cEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCE
Q 016849 315 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 352 (381)
Q Consensus 315 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~ 352 (381)
+.....|+++.|++.+-..|.+..+++..++...|=..
T Consensus 45 K~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~ 82 (116)
T KOG3439|consen 45 KKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNN 82 (116)
T ss_pred ecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcC
Confidence 34678899999999999999999999999999888433
No 300
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=40.54 E-value=1e+02 Score=22.84 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=41.1
Q ss_pred EEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeE-EE------EcCeeccCCCcccc
Q 016849 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LI------FAGKQLEDGRTLAD 134 (381)
Q Consensus 78 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~-L~------~~g~~L~d~~tl~~ 134 (381)
-|.|-..+|..-++.|+...|++++-..+..+.+...+.-. |+ .-.|.++|+..+-+
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvd 67 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVE 67 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHH
Confidence 35666788999999999999999999999999887654432 22 11355666654443
No 301
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=40.48 E-value=2.1e+02 Score=23.70 Aligned_cols=107 Identities=21% Similarity=0.362 Sum_probs=63.3
Q ss_pred ecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCc---ccccccCCCCEEEEEEeeccceeeeEEeccCcEEEEEE
Q 016849 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT---LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 245 (381)
Q Consensus 169 v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~t---L~~y~i~~~~~i~l~~~~~~~~~i~vk~~~g~~~~~~v 245 (381)
+-..+|.+.|-..+.+..|| .|.+-+|..|...-. .....+...+.-.+.+ .+-.+-.+...| .+.+++
T Consensus 10 ~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~VpyGPa~G~pv~h~~Rk~I~V---~g~~veL~V~vG-ri~lel 81 (153)
T PF02505_consen 10 LLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKTVPYGPARGTPVNHPDRKVINV---GGEEVELTVKVG-RIILEL 81 (153)
T ss_pred cCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCCCCCCCCCCCcCCCCcceEEEE---CCEEEEEEEEEe-EEEEEe
Confidence 34567899999999887666 577777777753222 1111111111111111 122222222234 456888
Q ss_pred ec-CCcHHHHHHhhhhccCCCcccceeeecCccccCCcccccc
Q 016849 246 ES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287 (381)
Q Consensus 246 ~~-~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y 287 (381)
+. .+.++.+++.+++.+..+.+ +..|.-+....|..+|
T Consensus 82 e~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 82 EDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred cCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 88 88999998888887754444 2357778889999888
No 302
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=40.20 E-value=1.4e+02 Score=21.52 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=20.0
Q ss_pred EEee-cCccHHHHHHHHhhhcC--CCCccceEEec
Q 016849 15 LEVE-SSDTIDNVKAKIQDKEG--IPPDQQRLIFA 46 (381)
Q Consensus 15 ~~v~-~~dtv~~~K~~i~~~~~--ip~~~q~l~~~ 46 (381)
+.++ ++-+|.+||+.|.++.+ -..+..-.+++
T Consensus 14 i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~n 48 (74)
T PF08783_consen 14 ITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYN 48 (74)
T ss_dssp EEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEE
T ss_pred EEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEEC
Confidence 4444 46789999999966654 44554444443
No 303
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=39.28 E-value=56 Score=23.88 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=28.5
Q ss_pred chHHHHHHHHHhHhCCCC-CCeEEEECCEEcCCCCcccc
Q 016849 325 DTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLAD 362 (381)
Q Consensus 325 ~tV~~lK~~i~~~~gi~~-~~q~L~~~g~~L~d~~~L~~ 362 (381)
.|.++|+.+.+++.+++. ....|.-+|..++|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~t 59 (79)
T cd06538 21 DSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQA 59 (79)
T ss_pred CCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhh
Confidence 489999999999999963 22445568999987754433
No 304
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=38.65 E-value=1.1e+02 Score=22.07 Aligned_cols=61 Identities=16% Similarity=0.338 Sum_probs=37.2
Q ss_pred cEEEEEeeCcchHHHHHHHHHhHhC-CCCCCeEEEE------CCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 315 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 315 ~~~~~~v~~~~tV~~lK~~i~~~~g-i~~~~q~L~~------~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
+.+..-.+|+.|+.+|+..|.+++. +-|....+.- .|--|+.+...++.- ..+++|.+.++
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DVf-~~~~~vrvi~~ 70 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDVF-NSNNVVRVILK 70 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeeee-ccCCEEEEEec
Confidence 4466678899999999999999984 4454433221 233344444444432 25666666654
No 305
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=38.55 E-value=33 Score=29.55 Aligned_cols=87 Identities=21% Similarity=0.286 Sum_probs=50.0
Q ss_pred EEEEEc-CCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeec--cCCCccccccccccccceeeEeecCCeE
Q 016849 2 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNIQKESTLHLVLRLRGGMQ 78 (381)
Q Consensus 2 ~i~~~~-~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L--~d~~tl~~~~i~~~s~i~l~~~~~~~~~ 78 (381)
++.++. .+|+.+......++.++.. .--..+.|.++..|..+ =|..+-.+|.+....--.-..-+.++|.
T Consensus 37 rvk~knL~tG~~~e~~f~~~~kve~~-------~~e~~~~q~ly~dgd~~~fMD~etyeq~~i~~~~l~~~~~~L~eg~~ 109 (184)
T TIGR00038 37 RVKLKNLLTGKVLEKTFRSGEKVEKA-------DVEEREMQYLYKDGDSYVFMDTETYEQIELPKDLLGDAAKFLKENME 109 (184)
T ss_pred EEEEEECCCCCEEEEEeCCCCEEEcc-------cEEeEEEEEEEECCCEEEEeCCCCccceEcCHHHHHHHHhhcCCCCE
Confidence 344444 5788877777777733221 11224447777777443 2555666666654321112223456788
Q ss_pred EEEEccCCcEEEEEEeC
Q 016849 79 IFVKTLTGKTITLEVES 95 (381)
Q Consensus 79 i~v~~~~g~~~~l~v~~ 95 (381)
+.|...+|+.+.++++.
T Consensus 110 v~v~~~~~~~i~v~lP~ 126 (184)
T TIGR00038 110 VSVTFYNGEPIGVELPN 126 (184)
T ss_pred EEEEEECCEEEEEECCC
Confidence 88888888887776654
No 306
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=38.43 E-value=36 Score=25.58 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=34.5
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeE-EEECCEEc
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQL 354 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~-L~~~g~~L 354 (381)
...+++.|+++.|=.|+|+.|+..+|+++...+ +.+.|+.-
T Consensus 20 ~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 20 PNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 367999999999999999999999999997776 44566643
No 307
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=37.57 E-value=55 Score=24.25 Aligned_cols=35 Identities=11% Similarity=0.231 Sum_probs=31.4
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~ 348 (381)
...+++.|++..+=.++|+.|+..+|+++...+-.
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 46899999999999999999999999999887643
No 308
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=37.17 E-value=1.3e+02 Score=21.89 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=24.1
Q ss_pred EEEEEeecCccHHHHHHHHhhhcCC
Q 016849 12 TITLEVESSDTIDNVKAKIQDKEGI 36 (381)
Q Consensus 12 ~~~~~v~~~dtv~~~K~~i~~~~~i 36 (381)
.-++.|.+++|+.+|-+.+.++.|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l 42 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGL 42 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCC
Confidence 7889999999999999999999999
No 309
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.30 E-value=97 Score=28.35 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=50.9
Q ss_pred CCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE--EcCeecc---CCCcccccccccCCceeE
Q 016849 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 145 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~---d~~tl~~~~i~~~~~i~l 145 (381)
..-.+.|+..+|++++.++++..|...++..+....|..+..-.|. |--+.+. -.++|...++...+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 4567888999999999999999999999999998887666444443 3233332 235677777766665544
No 310
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=36.25 E-value=90 Score=24.29 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=32.2
Q ss_pred CEEEEEcCCCcEEE--EEeecCccHHHHHHHHhhhcCCC
Q 016849 1 MQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIP 37 (381)
Q Consensus 1 ~~i~~~~~~g~~~~--~~v~~~dtv~~~K~~i~~~~~ip 37 (381)
|..|++.-++|--+ +.|.+++|+.+|-+.+-+|..+.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 78899998887665 99999999999999999998843
No 311
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=36.11 E-value=2.5e+02 Score=23.21 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=67.5
Q ss_pred EEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccc----cceeeEee-cCCeEEEEEccCCcEE
Q 016849 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES----TLHLVLRL-RGGMQIFVKTLTGKTI 89 (381)
Q Consensus 15 ~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s----~i~l~~~~-~~~~~i~v~~~~g~~~ 89 (381)
-.+-.-+|.+.+=.++.+.+|| .|.+.+|..|+..- .|+.-.+. .-.-.+.- ...+.+.|+. -.+
T Consensus 7 ~R~L~~eTtEklLN~l~~i~gI----~R~vIhGp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~V---GrI 76 (150)
T TIGR03260 7 HRLLKAETTEKLLNKLYDLDGI----LRVVIHGQRLPKKV---PYGPARGLPVNHPDRKTIRVKGEDVELRVQV---GRI 76 (150)
T ss_pred hhhCCHHHHHHHHHHhhccCCE----EEEEEECCCCCCCC---CCCcccCCCCCCCcceEEEECCEEEEEEEEE---eEE
Confidence 3344558889888899888887 68899999987532 23333222 11112221 2245555542 245
Q ss_pred EEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCccccc
Q 016849 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135 (381)
Q Consensus 90 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~ 135 (381)
-+++...+.+.++++...+.+-++.+ +..|+-+....|++||
T Consensus 77 ~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 77 ILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 56666778888888877766554432 2457889999999998
No 312
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=36.10 E-value=1.3e+02 Score=21.65 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=36.4
Q ss_pred EEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEEC
Q 016849 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350 (381)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 350 (381)
.+.-++.+...++|.|+.|+.|--.+..+.-|+.|+....+-.
T Consensus 3 r~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~~ 45 (74)
T cd01816 3 RVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFRL 45 (74)
T ss_pred eEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEEc
Confidence 4456778888999999999999999999999999887776653
No 313
>PRK12426 elongation factor P; Provisional
Probab=35.58 E-value=25 Score=30.29 Aligned_cols=86 Identities=14% Similarity=0.234 Sum_probs=54.4
Q ss_pred EEEEc-CCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeecc--CCCccccccccccccceeeEeecCCeEE
Q 016849 3 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLRLRGGMQI 79 (381)
Q Consensus 3 i~~~~-~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~--d~~tl~~~~i~~~s~i~l~~~~~~~~~i 79 (381)
+-++. .+|+.+.-...++|+++.+ .+ -..+.|+|+..|..+. |..+.+++.|....-=.-..-+.++|.+
T Consensus 39 ~klknl~tG~~~e~tf~s~ek~e~a--~v-----e~~~~qylY~dg~~~~FMd~etyeQi~i~~~~lgd~~~fL~e~~~v 111 (185)
T PRK12426 39 VSLQAADSDVVVERNFKAGQEVKEA--QF-----EPRNLEYLYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFLKAGVTV 111 (185)
T ss_pred EEEEEcCCCCeEEEEECCCCeEEEe--EE-----EeeEeEEEEECCCeEEEecCCCceEEEeCHHHhhhHHhhccCCCEE
Confidence 34444 5788888888888887543 11 1234588888887753 6667777776553221122234567788
Q ss_pred EEEccCCcEEEEEEeC
Q 016849 80 FVKTLTGKTITLEVES 95 (381)
Q Consensus 80 ~v~~~~g~~~~l~v~~ 95 (381)
.|...+|+.+.++++.
T Consensus 112 ~v~~~~~~~i~v~lP~ 127 (185)
T PRK12426 112 SALVYDGTVFSVELPH 127 (185)
T ss_pred EEEEECCEEEEEECCC
Confidence 8888888887776654
No 314
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=34.84 E-value=1.7e+02 Score=21.00 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=43.8
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE-CCEEcCCCCcccccCCCCCCEEEE
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHL 373 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~-~g~~L~d~~~L~~~~i~~~~~i~l 373 (381)
...+.|.++.....+-+-.++.+.+|+..--++- +|.-++..++-.+.-++.|+.|.|
T Consensus 17 ~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 17 YKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred ceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 3566888888777777777888999988776654 788999999999988999999876
No 315
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=33.41 E-value=1.1e+02 Score=22.43 Aligned_cols=56 Identities=9% Similarity=0.180 Sum_probs=35.3
Q ss_pred eeCcchHHHHHHHHHhHhC---CCCCCeE-E-EECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 321 VESSDTIDNVKAKIQDKEG---IPPDQQR-L-IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 321 v~~~~tV~~lK~~i~~~~g---i~~~~q~-L-~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.....|+++|.+.+.++.. ....... + ..+...+.+. ++-+++|++|.+.-+..||
T Consensus 24 ~~~~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~t~L~dGDeVa~~PPVsGG 84 (84)
T COG1977 24 LTVGATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVGL----DTPLKDGDEVAFFPPVSGG 84 (84)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeeccc----cccCCCCCEEEEeCCCCCC
Confidence 3457899999999876654 2222212 2 2233444433 3445679999999999888
No 316
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=33.30 E-value=1.8e+02 Score=20.90 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=50.8
Q ss_pred EEEEeeCcchHHHHHHHHHhHhCCCCCCeE-EEECCEEcCCCCcccccCCCCCCEEEEEEecCC
Q 016849 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 379 (381)
Q Consensus 317 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~-L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~G 379 (381)
..+.|.+.....-+-+-.++++.+|+..-- +.-+|.-++..++-..+-++.|+.+.+.-|-|=
T Consensus 18 kvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrv 81 (82)
T cd01766 18 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRV 81 (82)
T ss_pred eEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccC
Confidence 456788888777777777888888877664 456788899999999999999999999887663
No 317
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=33.18 E-value=2e+02 Score=21.31 Aligned_cols=60 Identities=23% Similarity=0.386 Sum_probs=41.5
Q ss_pred EEEEecCCchHHHHHHHhhhhh-C--CCC---CceEEEecC--cccCCCCcccccccCCCCEEEEEEe
Q 016849 165 ITLEVESSDTIDNVKAKIQDKE-G--IPP---DQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 224 (381)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~-~--ip~---~~q~L~~~g--~~L~d~~tL~~y~i~~~~~i~l~~~ 224 (381)
.-+.|+..+|+.++-+++.... | +++ ...++.++| +.+..+.++++.||.+-+.|.+...
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 3477899999999999997542 3 333 245666888 8999999999999999998887653
No 318
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=32.74 E-value=83 Score=22.71 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=33.6
Q ss_pred EEEEEEecCCcHHHHHHhhhhccCCCcccceeeecCcc-ccCCccccccccccCceeeEE
Q 016849 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLV 298 (381)
Q Consensus 240 ~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~-l~d~~tl~~y~i~~~~tl~l~ 298 (381)
.-.+.+..++||.++-.+|....+ ........|+... ....+--.+|.+++|+.+.+.
T Consensus 16 ~~~liL~~GaTV~D~a~~iH~di~-~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~ 74 (75)
T cd01666 16 DEPVILRRGSTVEDVCNKIHKDLV-KQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIV 74 (75)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHH-HhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEe
Confidence 345777889999999998885321 2222334432111 122334455677788887664
No 319
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=32.73 E-value=1.5e+02 Score=20.12 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=38.4
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 374 (381)
|.|..++|+... +..+.|+.|+=..|....+= ..-.-.-+|+..+-+..|. +|++|.+.
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~--~~~~A~Vng~~vdl~~~L~-----~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAK--RAVAAKVNGQLVDLDHPLE-----DGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHH--CEEEEEETTEEEETTSBB------SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHh--heeEEEEcCEECCCCCCcC-----CCCEEEEE
Confidence 456668887665 78889999999998876432 1122345787766555554 47777654
No 320
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=32.59 E-value=1.6e+02 Score=23.14 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=41.3
Q ss_pred ecCCeEEEEEccCCc------EEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeec-cCCCcccc
Q 016849 73 LRGGMQIFVKTLTGK------TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134 (381)
Q Consensus 73 ~~~~~~i~v~~~~g~------~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L-~d~~tl~~ 134 (381)
.++.+.|.|+..... .-.+-|+.+.||.++...|..+..+++++-.++|-|..+ ..+.++.+
T Consensus 21 yp~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~ 89 (112)
T cd01611 21 YPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQ 89 (112)
T ss_pred CCCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHH
Confidence 445666666643321 123459999999999999999999888876655544433 44555554
No 321
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=32.48 E-value=83 Score=23.10 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=28.3
Q ss_pred chHHHHHHHHHhHhCCCC-CCeEEEECCEEcCCCCcccc
Q 016849 325 DTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLAD 362 (381)
Q Consensus 325 ~tV~~lK~~i~~~~gi~~-~~q~L~~~g~~L~d~~~L~~ 362 (381)
.+.+||+.+.++..+++. ....|.-+|..++++.-+..
T Consensus 21 ~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~t 59 (81)
T cd06537 21 ASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFEL 59 (81)
T ss_pred cCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhh
Confidence 489999999999999973 33344558999987754443
No 322
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=32.34 E-value=1.6e+02 Score=22.45 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=31.8
Q ss_pred eEEeccCcEEEEEEecCCcHHHHHHhhhhccCCCcc-cceee
Q 016849 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI 272 (381)
Q Consensus 232 ~vk~~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~-~q~L~ 272 (381)
-|...++.-.++....+.||++|...+..++.++.. .+++.
T Consensus 6 RIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 6 RVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 344556666789999999999999999999988764 45544
No 323
>CHL00030 rpl23 ribosomal protein L23
Probab=31.85 E-value=66 Score=24.33 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=31.0
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~ 348 (381)
...+++.|+++.|=.++|+.|+..+|+.+...+-.
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~ 53 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSH 53 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEE
Confidence 46899999999999999999999999988777643
No 324
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=31.52 E-value=1.5e+02 Score=22.28 Aligned_cols=42 Identities=14% Similarity=0.331 Sum_probs=30.9
Q ss_pred eccCcEEEEEEec-----CCcHHHHHHhhhhccCCCcc-cceeeecCc
Q 016849 235 TLTGKTITLEVES-----SDTIDNVKAKIQDKEGIPPD-QQRLIFAGK 276 (381)
Q Consensus 235 ~~~g~~~~~~v~~-----~~tV~~Lk~~i~~~~~ip~~-~q~L~~~g~ 276 (381)
+++|....+.+.. +.+.++|+++|.+.+++|++ ...|.|...
T Consensus 6 ~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~De 53 (91)
T cd06398 6 KYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDE 53 (91)
T ss_pred EeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECC
Confidence 3566666666664 68999999999999999884 455667443
No 325
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.65 E-value=39 Score=33.06 Aligned_cols=55 Identities=25% Similarity=0.266 Sum_probs=47.2
Q ss_pred EEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEE
Q 016849 318 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 372 (381)
Q Consensus 318 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~ 372 (381)
.++.+...|=.+|...|+++.||+-+..+.+-+|+.|.-.+||++-|++....+.
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~m 107 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELM 107 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHH
Confidence 3456667788899999999999999999999999999999999999987655443
No 326
>PRK00529 elongation factor P; Validated
Probab=30.50 E-value=65 Score=27.79 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=48.4
Q ss_pred EEEEEc-CCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeec--cCCCccccccccccccceeeEeecCCeE
Q 016849 2 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNIQKESTLHLVLRLRGGMQ 78 (381)
Q Consensus 2 ~i~~~~-~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L--~d~~tl~~~~i~~~s~i~l~~~~~~~~~ 78 (381)
++..+. .+|+.+......++.++.. .=-..+.|.++..|..+ =|..+-++|.+....--.-..-+.++|.
T Consensus 38 rvk~knL~tG~~~e~~f~~~e~ve~~-------~ve~~~~q~ly~dgd~~~fMD~etyeq~~l~~~~lg~~~~~L~eg~~ 110 (186)
T PRK00529 38 RTKLKNLLTGSVVEKTFKAGDKVERA-------DVERREMQYLYNDGDGYVFMDTETYEQIEVPADQVGDAAKFLKEGME 110 (186)
T ss_pred EEEEEECCCCCeEEEEeCCCCEEEec-------cEEeEEEEEEEECCCEEEEecCCCceeeEcCHHHhHHHHhhccCCCE
Confidence 344443 5777776666666663321 11123447777777432 3445666666664421111222456777
Q ss_pred EEEEccCCcEEEEEEeC
Q 016849 79 IFVKTLTGKTITLEVES 95 (381)
Q Consensus 79 i~v~~~~g~~~~l~v~~ 95 (381)
+.|...+|+.+.++++.
T Consensus 111 v~v~~~~~~~i~v~lP~ 127 (186)
T PRK00529 111 VTVVFYNGEPISVELPN 127 (186)
T ss_pred EEEEEECCEEEEEECCC
Confidence 88887888877766654
No 327
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=30.32 E-value=94 Score=23.58 Aligned_cols=61 Identities=15% Similarity=0.265 Sum_probs=43.5
Q ss_pred CCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE-ECCE------E---cCCCCcccccCCCCCCEEEE
Q 016849 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK------Q---LEDGRTLADYNIQKESTLHL 373 (381)
Q Consensus 313 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~~g~------~---L~d~~~L~~~~i~~~~~i~l 373 (381)
....+++.|++..|=.++|+.+++.+|+.+....-. ..|+ . +..+..-++--+..|+.|.+
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V~l~~G~~i~~ 90 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKEGQSIDF 90 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceEEeccccccCcccceeEEEccCCCEEee
Confidence 346899999999999999999999999988887643 3322 1 34444555555556666544
No 328
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=29.22 E-value=82 Score=22.98 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=17.9
Q ss_pred EEEEEeCCCCHHHHHHHHHhHh
Q 016849 89 ITLEVESSDTIDNVKAKIQDKE 110 (381)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~ 110 (381)
++++++.+.|+.++|+.+.+..
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHG
T ss_pred eEEEccCcCcHHHHHHHHHHHH
Confidence 5788999999999999987653
No 329
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=28.13 E-value=1e+02 Score=30.03 Aligned_cols=85 Identities=13% Similarity=0.262 Sum_probs=61.7
Q ss_pred CCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE--EcCeeccC---CCcccccccccCCceeEEEee
Q 016849 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLVLRL 149 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~d---~~tl~~~~i~~~~~i~l~~~~ 149 (381)
+..++.|+..+|..++=.++.++-...++..+...-++......|- |--|+..+ .++|.+..+.+...+.++.+.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 4567888889999998888889999999999998777776665553 66677643 478999888888766665443
Q ss_pred ecceeeEEEecc
Q 016849 150 RGGMQIFVKTLT 161 (381)
Q Consensus 150 ~~~~~v~v~~~~ 161 (381)
+ ..+.+...+
T Consensus 393 r--~t~s~~gss 402 (506)
T KOG2507|consen 393 R--ATVSQRGSS 402 (506)
T ss_pred C--cceEEecCc
Confidence 3 334444433
No 330
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=27.93 E-value=1.4e+02 Score=23.03 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=31.7
Q ss_pred EEeecCccHHHHHHHHhhhcCCCCcc-ceEEecCeeccCCCcccc
Q 016849 15 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLAD 58 (381)
Q Consensus 15 ~~v~~~dtv~~~K~~i~~~~~ip~~~-q~l~~~g~~L~d~~tl~~ 58 (381)
+.|....||.++..-|+++..+++++ -.|+.++.....+.||++
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 56889999999999999999998886 344445544456677764
No 331
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=27.87 E-value=1.5e+02 Score=21.61 Aligned_cols=49 Identities=20% Similarity=0.471 Sum_probs=32.8
Q ss_pred CcHHHHHHhhhhccCCCcccceeee--cCccccCCccccccccccCceeeEEEE
Q 016849 249 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 300 (381)
Q Consensus 249 ~tV~~Lk~~i~~~~~ip~~~q~L~~--~g~~l~d~~tl~~y~i~~~~tl~l~~~ 300 (381)
.+.++|+.+..++++++...-.|+. .|.+++|+.=+.. +++ .|..+.+.
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~-nT~lm~L~ 71 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--LPD-NTVLMLLE 71 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--SSS-SEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--CCC-CCEEEEEC
Confidence 6899999999999999976666653 6777776654443 344 34434433
No 332
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=27.78 E-value=3.5e+02 Score=22.36 Aligned_cols=107 Identities=20% Similarity=0.359 Sum_probs=61.5
Q ss_pred ecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCc---ccccccCCCCEEEEEEeeccceeeeEEeccCcEEEEEE
Q 016849 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT---LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 245 (381)
Q Consensus 169 v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~t---L~~y~i~~~~~i~l~~~~~~~~~i~vk~~~g~~~~~~v 245 (381)
+-..+|.+.|-.++++..|| .|++-.|..|...-+ .........+.=.+.+ .+..+-.+...| .+.+++
T Consensus 9 ~L~~eTtEklLN~l~~i~gI----~R~vIhGp~LPk~VpyGPa~G~pv~h~~Rk~I~V---~g~~veL~V~VG-rI~le~ 80 (150)
T TIGR03260 9 LLKAETTEKLLNKLYDLDGI----LRVVIHGQRLPKKVPYGPARGLPVNHPDRKTIRV---KGEDVELRVQVG-RIILEL 80 (150)
T ss_pred hCCHHHHHHHHHHhhccCCE----EEEEEECCCCCCCCCCCcccCCCCCCCcceEEEE---CCEEEEEEEEEe-EEEEEe
Confidence 34567888888888777665 466666766653221 1111111111111111 122222333334 455777
Q ss_pred ecCCcHHHHHHhhhhccCCCcccceeeecCccccCCcccccc
Q 016849 246 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287 (381)
Q Consensus 246 ~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y 287 (381)
...+.++.+++.+.+.+..+.+ +..|+-+....|..+|
T Consensus 81 ~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 81 EDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred cCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 7888999999999888775554 2345567888888887
No 333
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=27.68 E-value=92 Score=23.19 Aligned_cols=59 Identities=7% Similarity=0.081 Sum_probs=40.2
Q ss_pred EEEEeeCcchHHHHHHHHHhHhCCCCCCeE-EEECCEEc-CCCCc---ccccCCCCCCEEEEEEe
Q 016849 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQL-EDGRT---LADYNIQKESTLHLVLR 376 (381)
Q Consensus 317 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~-L~~~g~~L-~d~~~---L~~~~i~~~~~i~l~~~ 376 (381)
..+.|+.+.|++++..-|..+.++++++-. |+.+...+ ..+.+ |.++- +.+.-|++...
T Consensus 18 ~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Ys 81 (87)
T cd01612 18 KVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSYC 81 (87)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEEe
Confidence 455699999999999999999999887744 44455423 33333 44444 55666776653
No 334
>PRK14578 elongation factor P; Provisional
Probab=27.19 E-value=41 Score=29.07 Aligned_cols=86 Identities=15% Similarity=0.277 Sum_probs=52.1
Q ss_pred EEEEc-CCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeecc--CCCccccccccccccceeeEeecCCeEE
Q 016849 3 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLRLRGGMQI 79 (381)
Q Consensus 3 i~~~~-~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~--d~~tl~~~~i~~~s~i~l~~~~~~~~~i 79 (381)
+-++. .+|+.......++|.|+.. .+. ....|.|+..|..+. |..|-+++.|....-=....-+.++|.+
T Consensus 41 ~klknl~tG~~~e~tf~s~d~ve~a--~ve-----~~~~qylY~dg~~~~FMD~etyEQ~~i~~~~~g~~~~fL~e~~~v 113 (187)
T PRK14578 41 TKYRNLLTGQVLEKTFRSGDKVEEA--DFE-----RHKGQFLYADGDRGVFMDLETYEQFEMEEDAFSAIAPFLLDGTEV 113 (187)
T ss_pred EEEEECCCCCEEEEEECCCCEEEEe--EEE-----EeEeEEEEeCCCEEEEecCCCcEEEEecHHHhhhHHhhccCCCEE
Confidence 33443 5788888888888776553 111 234488888877653 5567777766543211112224567778
Q ss_pred EEEccCCcEEEEEEeC
Q 016849 80 FVKTLTGKTITLEVES 95 (381)
Q Consensus 80 ~v~~~~g~~~~l~v~~ 95 (381)
.|...+|+.+.++++.
T Consensus 114 ~v~~~~~~~i~v~lP~ 129 (187)
T PRK14578 114 QLGLFQGRMVNVDLPM 129 (187)
T ss_pred EEEEECCEEEEEECCC
Confidence 8877888877766653
No 335
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=25.87 E-value=1.2e+02 Score=22.77 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=34.1
Q ss_pred CcEEEEEeecCccHHHHHHHHhhhcCCCCcc-ceEEecCee
Q 016849 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQ 49 (381)
Q Consensus 10 g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~-q~l~~~g~~ 49 (381)
.+..+++|+++.|=.+||+.|++..|+++.. ..+.+.|+.
T Consensus 20 ~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 20 PNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 3689999999999999999999999998854 667777664
No 336
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=24.88 E-value=2.7e+02 Score=19.98 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=41.8
Q ss_pred EEEEecCCcHHHHHHhhhhccCCCcccceee-ecCccccCCccccccccccCceeeEE
Q 016849 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLV 298 (381)
Q Consensus 242 ~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~-~~g~~l~d~~tl~~y~i~~~~tl~l~ 298 (381)
.+.|.+.+....+-+--.+++.+|+....+. -.|.-....+|-.+--++-|++|+|+
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 3677788877777777788899988877766 45777888899888888889988764
No 337
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=24.08 E-value=2.9e+02 Score=26.17 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=44.2
Q ss_pred cCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEeeccc
Q 016849 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (381)
Q Consensus 161 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~ 228 (381)
+|+. .++....|+.+|-+. .+++++...+..||+.+. .....++-+++||.|.++-.-.+|
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEecCC
Confidence 4664 445567788877654 488888888889998874 333456678999999999876655
No 338
>PRK08453 fliD flagellar capping protein; Validated
Probab=23.87 E-value=2.2e+02 Score=29.94 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=54.0
Q ss_pred cCcEEEEEecCCchHHHHHHHhhhhh-----------CCCCCceEEEecCcccCCC------CcccccccCCCCEEEEEE
Q 016849 161 TGKTITLEVESSDTIDNVKAKIQDKE-----------GIPPDQQRLIFAGKQLEDG------RTLADYNIQKESTLHLVL 223 (381)
Q Consensus 161 ~g~~~~i~v~~~~tV~~lK~~i~~~~-----------~ip~~~q~L~~~g~~L~d~------~tL~~y~i~~~~~i~l~~ 223 (381)
+|+.+.++|....|+.+|+.+|-... | ..+.++|+..+...-.+ .+|+.-.+..|..-.+-.
T Consensus 136 ~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~~~ 214 (673)
T PRK08453 136 QGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLVDG 214 (673)
T ss_pred CCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCcCCCceEEEeccccccccCCcccccccc
Confidence 59999999999999999999998421 2 12357777777665433 344444455444222222
Q ss_pred eeccceeeeEEeccCcEEEEEE
Q 016849 224 RLRGGMQIFVKTLTGKTITLEV 245 (381)
Q Consensus 224 ~~~~~~~i~vk~~~g~~~~~~v 245 (381)
.-.+...|.++..+|+..++.+
T Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 215 SGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccceeeeeccCCccccccc
Confidence 2334467778888887776555
No 339
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.77 E-value=70 Score=31.42 Aligned_cols=58 Identities=24% Similarity=0.274 Sum_probs=48.5
Q ss_pred EEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEE
Q 016849 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (381)
Q Consensus 90 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~ 147 (381)
.+.++..-|=.++...|+.++|++.+..+.+.+|++|.-.+||.+-|++.+....+.+
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~ 110 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAV 110 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHh
Confidence 3445556678899999999999999988999999999999999999988776555443
No 340
>COG5272 UBI4 Ubiquitin [Posttranslational modification, protein turnover, chaperones]
Probab=23.19 E-value=22 Score=24.07 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=42.0
Q ss_pred EEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCc
Q 016849 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 55 (381)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~t 55 (381)
..+++...|.......+...+-+....+.....+.+++.+.+.+.+..+...+.
T Consensus 2 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (57)
T COG5272 2 AKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRI 55 (57)
T ss_pred CccccccccccccccchHHHHhhccchhhhhhhccChhhhhccccccccccccc
Confidence 345666677778888888777777777777778899999999999998876554
No 341
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=22.78 E-value=1.7e+02 Score=20.45 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=24.0
Q ss_pred CcccccccCCCCEEEEEEeeccceeeeEEeccCcEEEE
Q 016849 206 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL 243 (381)
Q Consensus 206 ~tL~~y~i~~~~~i~l~~~~~~~~~i~vk~~~g~~~~~ 243 (381)
+-|.+.|+.+|+.+.+.-+.+.+-.+.+.. +|..+.+
T Consensus 26 ~~L~~lGl~~G~~i~v~~~~~~~~~~~i~~-~~~~i~L 62 (74)
T PF04023_consen 26 RRLADLGLTPGSEITVIRKNPFGGPVVIKV-DGSRIAL 62 (74)
T ss_dssp HHHHHCT-STTEEEEEEEEETTSSEEEEEE-TTEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEEEc
Confidence 557889999999999997655444444443 3555444
No 342
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=22.71 E-value=1.2e+02 Score=25.27 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=24.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHH
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVK 27 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K 27 (381)
+.|++.+.+|+.+.+.....|||.++-
T Consensus 44 i~Itfv~~dG~~~~i~g~vGdtlLd~a 70 (159)
T KOG3309|consen 44 IKITFVDPDGEEIKIKGKVGDTLLDAA 70 (159)
T ss_pred EEEEEECCCCCEEEeeeecchHHHHHH
Confidence 468999999999999999999999863
No 343
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=22.58 E-value=1.5e+02 Score=21.54 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=27.8
Q ss_pred cccccccccCceeeEEEEeecCee-eEEEeeCCcEEEE----Eee-CcchHHHHHHHHHhHhC
Q 016849 283 TLADYNIQKESTLHLVLRLRGGMQ-IFVKTLTGKTITL----EVE-SSDTIDNVKAKIQDKEG 339 (381)
Q Consensus 283 tl~~y~i~~~~tl~l~~~~~~~m~-I~v~~~~g~~~~~----~v~-~~~tV~~lK~~i~~~~g 339 (381)
....|.|.+||.|.+..-....+. -+....+|. +.+ .+. .+.|+.++++.|..+..
T Consensus 7 ~~~~y~l~pGD~l~i~v~~~~~l~~~~~V~~dG~-I~lP~iG~v~v~G~T~~e~~~~I~~~l~ 68 (82)
T PF02563_consen 7 APPEYRLGPGDVLRISVFGWPELSGEYTVDPDGT-ISLPLIGPVKVAGLTLEEAEEEIKQRLQ 68 (82)
T ss_dssp HT------TT-EEEEEETT-HHHCCSEE--TTSE-EEETTTEEEE-TT--HHHHHHHHHHHHT
T ss_pred CCCCCEECCCCEEEEEEecCCCcccceEECCCCc-EeecccceEEECCCCHHHHHHHHHHHHH
Confidence 456899999999998765433331 122245554 433 222 47799999999998864
No 344
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=22.52 E-value=2.3e+02 Score=18.45 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=34.1
Q ss_pred EEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 016849 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 374 (381)
+|-.++|+. +++..+.|+.++-+.+.. +++..-.....+|+..+-+.. +.+|++|.+.
T Consensus 2 ~~~~~~g~~--~~~~~~~t~~~~~~~~~~--~~~~~~va~~vng~~vdl~~~-----l~~~~~ve~v 59 (60)
T cd01668 2 YVFTPKGEI--IELPAGATVLDFAYAIHT--EIGNRCVGAKVNGKLVPLSTV-----LKDGDIVEII 59 (60)
T ss_pred EEECCCCCE--EEcCCCCCHHHHHHHHCh--HhhhheEEEEECCEECCCCCC-----CCCCCEEEEE
Confidence 455566764 557788899997665432 233333445568887653333 4457776653
No 345
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=20.98 E-value=1.6e+02 Score=24.72 Aligned_cols=38 Identities=8% Similarity=0.036 Sum_probs=32.7
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE-ECC
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 351 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~~g 351 (381)
...+++.|+++.|=.++|..|+..+|+.+...+-. ..|
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~ 60 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDK 60 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCC
Confidence 45799999999999999999999999999887654 344
No 346
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=20.75 E-value=2.4e+02 Score=26.70 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=49.4
Q ss_pred EEEEEeeCcchHHHHHHHHHhHh--------------C-CCCCCeEEEECCEEcCCCCcccccC---CCCCCEEEEEEec
Q 016849 316 TITLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVLRL 377 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~--------------g-i~~~~q~L~~~g~~L~d~~~L~~~~---i~~~~~i~l~~~~ 377 (381)
..-|.......|..++.-|.++. . -|.+...|+|+|+.|..+.||+-.. =+.+.-|.|..|.
T Consensus 249 ~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~ 328 (331)
T PF11816_consen 249 NSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRR 328 (331)
T ss_pred cceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEe
Confidence 35677777888999999999988 2 5667778999999999999887653 2466677777776
Q ss_pred CC
Q 016849 378 RG 379 (381)
Q Consensus 378 ~G 379 (381)
.|
T Consensus 329 k~ 330 (331)
T PF11816_consen 329 KG 330 (331)
T ss_pred cC
Confidence 54
No 347
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=20.24 E-value=1.2e+02 Score=22.06 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=18.6
Q ss_pred EEEEEeCCCCHHHHHHHHHhHh
Q 016849 89 ITLEVESSDTIDNVKAKIQDKE 110 (381)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~ 110 (381)
+.+.++.+.|+.++|..+.+..
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A 23 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQA 23 (78)
T ss_pred eeEEccccccHHHHHHHHHHHH
Confidence 4688999999999999987653
Done!