Query 016849
Match_columns 381
No_of_seqs 429 out of 2705
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 04:48:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 1.3E-36 4.5E-41 257.3 18.2 152 1-152 3-157 (159)
2 3u30_A Ubiquitin, linear DI-ub 100.0 7.2E-36 2.5E-40 255.9 16.8 152 1-152 21-172 (172)
3 3rt3_B Ubiquitin-like protein 100.0 1.7E-35 5.8E-40 250.5 18.1 153 229-381 3-158 (159)
4 3u30_A Ubiquitin, linear DI-ub 100.0 1.5E-34 5.1E-39 247.6 17.0 154 227-380 19-172 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 6.1E-34 2.1E-38 239.2 18.7 152 1-152 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 5.5E-33 1.9E-37 233.4 18.1 152 229-380 1-152 (152)
7 3plu_A Ubiquitin-like modifier 99.8 6.1E-21 2.1E-25 142.0 8.6 70 1-70 22-91 (93)
8 3phx_B Ubiquitin-like protein 99.8 2.4E-20 8.1E-25 138.1 10.3 78 302-379 2-79 (79)
9 4fbj_B NEDD8; effector-HOST ta 99.8 3.4E-20 1.2E-24 140.0 9.3 77 305-381 1-77 (88)
10 3plu_A Ubiquitin-like modifier 99.8 1E-19 3.5E-24 135.4 9.9 79 297-375 14-92 (93)
11 3phx_B Ubiquitin-like protein 99.8 9.7E-20 3.3E-24 134.8 9.0 75 1-75 5-79 (79)
12 1ndd_A NEDD8, protein (ubiquit 99.8 1.6E-19 5.4E-24 132.6 9.6 76 305-380 1-76 (76)
13 3dbh_I NEDD8; cell cycle, acti 99.8 1.2E-19 4E-24 137.3 8.9 79 302-380 10-88 (88)
14 2uyz_B Small ubiquitin-related 99.8 1.3E-19 4.4E-24 134.1 8.5 77 304-380 3-79 (79)
15 4eew_A Large proline-rich prot 99.8 1.9E-19 6.5E-24 136.1 9.4 88 288-376 1-88 (88)
16 3n3k_B Ubiquitin; hydrolase, p 99.8 1.8E-19 6.1E-24 135.3 9.1 79 303-381 2-80 (85)
17 1uh6_A Ubiquitin-like 5; beta- 99.8 9.2E-20 3.2E-24 138.6 7.2 70 1-70 29-98 (100)
18 4hcn_B Polyubiquitin, ubiquiti 99.8 2.1E-19 7.1E-24 138.6 9.3 79 302-380 20-98 (98)
19 1sif_A Ubiquitin; hydrophobic 99.8 2.5E-19 8.5E-24 135.3 9.1 78 304-381 9-86 (88)
20 3a9j_A Ubiquitin; protein comp 99.8 4.1E-19 1.4E-23 130.3 10.1 76 305-380 1-76 (76)
21 4fbj_B NEDD8; effector-HOST ta 99.8 2.3E-19 8E-24 135.4 8.6 77 1-77 1-77 (88)
22 3mtn_B UBA80, ubcep1, ubiquiti 99.8 4.2E-19 1.4E-23 133.3 9.9 79 303-381 2-80 (85)
23 1wyw_B Ubiquitin-like protein 99.8 2.8E-19 9.5E-24 137.5 9.0 79 302-380 19-97 (97)
24 2lxa_A Ubiquitin-like protein 99.8 1.3E-19 4.5E-24 135.5 6.9 73 1-73 2-78 (87)
25 2ojr_A Ubiquitin; lanthide-bin 99.8 3.4E-19 1.2E-23 140.5 9.7 93 288-380 11-111 (111)
26 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 4.2E-19 1.4E-23 133.9 9.7 80 302-381 5-84 (87)
27 2kk8_A Uncharacterized protein 99.8 2.7E-19 9.4E-24 133.5 7.9 73 1-73 11-84 (84)
28 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 5.9E-19 2E-23 135.7 9.9 77 305-381 2-78 (96)
29 2kdi_A Ubiquitin, vacuolar pro 99.8 8.2E-21 2.8E-25 150.2 -1.3 100 1-100 10-112 (114)
30 2hj8_A Interferon-induced 17 k 99.8 4.9E-19 1.7E-23 133.7 7.8 79 303-381 3-81 (88)
31 2l7r_A Ubiquitin-like protein 99.8 6.8E-19 2.3E-23 134.2 8.3 77 302-380 17-93 (93)
32 3vdz_A Ubiquitin-40S ribosomal 99.8 1.3E-18 4.6E-23 136.9 10.3 78 303-380 34-111 (111)
33 1wy8_A NP95-like ring finger p 99.8 1.7E-18 5.9E-23 131.1 10.2 79 303-381 6-86 (89)
34 4ajy_B Transcription elongatio 99.8 6.2E-19 2.1E-23 137.1 7.8 75 1-75 1-83 (118)
35 2uyz_B Small ubiquitin-related 99.8 6E-19 2E-23 130.5 7.3 75 1-75 4-78 (79)
36 2kan_A Uncharacterized protein 99.8 1.3E-18 4.6E-23 132.7 9.4 79 302-381 13-92 (94)
37 1yx5_B Ubiquitin; proteasome, 99.8 1.2E-18 4.2E-23 134.3 9.2 91 1-91 1-91 (98)
38 2fnj_B Transcription elongatio 99.8 6.9E-19 2.4E-23 137.6 7.5 73 1-73 1-81 (118)
39 1wyw_B Ubiquitin-like protein 99.8 1E-18 3.4E-23 134.3 7.5 76 1-76 22-97 (97)
40 3v6c_B Ubiquitin; structural g 99.8 2.9E-18 9.8E-23 130.4 9.8 77 302-378 15-91 (91)
41 2kdi_A Ubiquitin, vacuolar pro 99.8 1.8E-19 6.1E-24 142.5 2.8 103 74-176 7-112 (114)
42 4dwf_A HLA-B-associated transc 99.7 2.6E-18 8.9E-23 130.4 8.6 74 1-75 6-79 (90)
43 4dwf_A HLA-B-associated transc 99.7 4.3E-18 1.5E-22 129.2 9.8 77 303-380 4-80 (90)
44 4eew_A Large proline-rich prot 99.7 3.6E-18 1.2E-22 129.0 9.2 87 61-148 2-88 (88)
45 1ndd_A NEDD8, protein (ubiquit 99.7 4.3E-18 1.5E-22 124.8 9.1 75 1-75 1-75 (76)
46 1yx5_B Ubiquitin; proteasome, 99.7 5.3E-18 1.8E-22 130.8 10.0 77 305-381 1-77 (98)
47 3dbh_I NEDD8; cell cycle, acti 99.7 2.7E-18 9.1E-23 129.8 8.1 76 1-76 13-88 (88)
48 1se9_A Ubiquitin family; ubiqu 99.7 2.8E-18 9.6E-23 135.7 8.5 76 1-76 17-106 (126)
49 2faz_A Ubiquitin-like containi 99.7 3.1E-18 1E-22 126.3 8.0 73 1-73 3-77 (78)
50 2kk8_A Uncharacterized protein 99.7 4.1E-18 1.4E-22 127.1 8.4 75 303-377 9-84 (84)
51 1sif_A Ubiquitin; hydrophobic 99.7 4.5E-18 1.5E-22 128.3 8.6 76 1-76 10-85 (88)
52 3v6c_B Ubiquitin; structural g 99.7 4.1E-18 1.4E-22 129.5 8.4 74 1-74 18-91 (91)
53 2hj8_A Interferon-induced 17 k 99.7 2.5E-18 8.7E-23 129.7 7.0 76 1-76 5-80 (88)
54 4hcn_B Polyubiquitin, ubiquiti 99.7 5.6E-18 1.9E-22 130.5 8.7 76 1-76 23-98 (98)
55 3l0w_B Monoubiquitinated proli 99.7 8.5E-18 2.9E-22 142.2 10.5 77 305-381 1-77 (169)
56 2faz_A Ubiquitin-like containi 99.7 1.1E-17 3.7E-22 123.4 9.7 74 304-377 2-77 (78)
57 2fnj_B Transcription elongatio 99.7 6.4E-18 2.2E-22 132.1 8.6 75 305-380 1-83 (118)
58 1wgh_A Ubiquitin-like 3, HCG-1 99.7 7.2E-18 2.5E-22 132.3 8.7 74 1-74 17-100 (116)
59 3n3k_B Ubiquitin; hydrolase, p 99.7 7.3E-18 2.5E-22 126.4 8.0 76 1-76 4-79 (85)
60 2kan_A Uncharacterized protein 99.7 7.9E-18 2.7E-22 128.3 8.1 75 1-76 16-91 (94)
61 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1.2E-17 4E-22 128.4 9.1 79 1-79 2-80 (96)
62 1uh6_A Ubiquitin-like 5; beta- 99.7 7E-18 2.4E-22 128.2 7.6 72 304-375 28-99 (100)
63 4a20_A Ubiquitin-like protein 99.7 8.9E-18 3E-22 128.3 8.2 72 1-72 20-95 (98)
64 3b1l_X E3 ubiquitin-protein li 99.6 3.1E-19 1E-23 131.1 0.0 75 305-379 1-75 (76)
65 4ajy_B Transcription elongatio 99.7 1.5E-17 5.2E-22 129.3 9.5 77 305-381 1-85 (118)
66 1we6_A Splicing factor, putati 99.7 7.9E-18 2.7E-22 132.7 7.9 79 302-380 25-107 (111)
67 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1E-17 3.4E-22 126.3 8.1 76 1-76 8-83 (87)
68 3a9j_A Ubiquitin; protein comp 99.7 1.7E-17 5.8E-22 121.6 9.1 76 1-76 1-76 (76)
69 1wgd_A Homocysteine-responsive 99.7 1.1E-17 3.8E-22 127.6 8.1 78 303-380 6-89 (93)
70 1v2y_A 3300001G02RIK protein; 99.7 3.2E-18 1.1E-22 131.9 4.9 76 1-76 8-99 (105)
71 3l0w_B Monoubiquitinated proli 99.7 1.3E-17 4.4E-22 141.1 9.1 99 1-99 1-102 (169)
72 3q3f_A Ribonuclease/ubiquitin 99.7 1.5E-17 5.1E-22 142.0 9.5 80 302-381 103-182 (189)
73 3mtn_B UBA80, ubcep1, ubiquiti 99.7 1.8E-17 6.1E-22 124.3 8.6 76 1-76 4-79 (85)
74 1wju_A NEDD8 ultimate buster-1 99.7 2.2E-17 7.6E-22 125.5 9.0 66 314-380 29-94 (100)
75 3m62_B UV excision repair prot 99.7 1E-17 3.5E-22 130.7 7.4 74 1-74 2-75 (106)
76 3q3f_A Ribonuclease/ubiquitin 99.7 6.5E-18 2.2E-22 144.3 6.5 82 1-82 106-187 (189)
77 2l7r_A Ubiquitin-like protein 99.7 1.5E-17 5.3E-22 126.6 8.0 74 1-76 20-93 (93)
78 1wy8_A NP95-like ring finger p 99.7 2E-17 6.9E-22 125.2 8.5 76 1-76 8-85 (89)
79 2dzi_A Ubiquitin-like protein 99.7 2.9E-17 9.8E-22 122.0 9.1 76 303-378 6-81 (81)
80 3b1l_X E3 ubiquitin-protein li 99.5 6.6E-19 2.3E-23 129.3 0.0 75 1-75 1-75 (76)
81 3vdz_A Ubiquitin-40S ribosomal 99.7 2.6E-17 9E-22 129.5 8.7 76 1-76 36-111 (111)
82 2gow_A HCG-1 protein, ubiquiti 99.7 1.9E-17 6.6E-22 131.8 7.8 75 1-75 18-102 (125)
83 1wju_A NEDD8 ultimate buster-1 99.7 2.4E-17 8.1E-22 125.3 7.9 72 3-75 18-93 (100)
84 1uel_A HHR23B, UV excision rep 99.7 4.4E-17 1.5E-21 124.7 9.4 73 1-73 1-76 (95)
85 2lxa_A Ubiquitin-like protein 99.7 1.9E-17 6.4E-22 123.7 6.9 73 305-377 2-78 (87)
86 1yqb_A Ubiquilin 3; structural 99.7 3.9E-17 1.3E-21 126.0 8.9 78 302-380 20-97 (100)
87 2wyq_A HHR23A, UV excision rep 99.7 4.2E-17 1.4E-21 122.3 8.7 73 1-73 6-81 (85)
88 2dzi_A Ubiquitin-like protein 99.7 5.5E-17 1.9E-21 120.5 8.9 73 1-73 8-80 (81)
89 4dbg_A Ranbp-type and C3HC4-ty 99.7 4.6E-17 1.6E-21 124.7 8.4 73 1-73 25-100 (105)
90 1uel_A HHR23B, UV excision rep 99.7 1.1E-16 3.9E-21 122.4 10.6 75 305-379 1-78 (95)
91 1wx8_A Riken cDNA 4931431F19; 99.7 2.2E-17 7.5E-22 126.8 6.7 77 303-380 16-92 (96)
92 2wyq_A HHR23A, UV excision rep 99.7 1.2E-16 4E-21 119.8 10.1 75 303-377 4-81 (85)
93 1wgd_A Homocysteine-responsive 99.7 4.3E-17 1.5E-21 124.3 7.8 76 1-76 8-89 (93)
94 1we7_A SF3A1 protein; structur 99.7 8.1E-17 2.8E-21 127.7 9.6 69 313-381 44-112 (115)
95 3m63_B Ubiquitin domain-contai 99.7 1.3E-17 4.4E-22 128.9 4.8 92 282-376 8-99 (101)
96 1v2y_A 3300001G02RIK protein; 99.7 1.9E-17 6.4E-22 127.6 5.5 78 303-380 6-99 (105)
97 3u5e_m 60S ribosomal protein L 99.7 2.1E-18 7.3E-23 139.5 0.2 77 305-381 1-77 (128)
98 1j8c_A Ubiquitin-like protein 99.7 1.4E-16 4.9E-21 127.7 10.0 78 303-381 31-108 (125)
99 3m62_B UV excision repair prot 99.7 6.6E-17 2.2E-21 126.2 7.7 73 305-377 2-74 (106)
100 1se9_A Ubiquitin family; ubiqu 99.7 9.4E-17 3.2E-21 127.0 8.6 79 302-380 14-106 (126)
101 3u5c_f 40S ribosomal protein S 99.7 3E-18 1E-22 141.6 0.0 77 305-381 1-77 (152)
102 2bwf_A Ubiquitin-like protein 99.7 1.1E-16 3.8E-21 117.6 8.4 71 1-72 5-75 (77)
103 2kdb_A Homocysteine-responsive 99.7 5E-17 1.7E-21 124.5 6.7 70 1-70 24-99 (99)
104 2bwf_A Ubiquitin-like protein 99.7 2.2E-16 7.7E-21 115.9 9.9 72 305-377 5-76 (77)
105 1ttn_A DC-UBP, dendritic cell- 99.7 7.9E-17 2.7E-21 125.8 7.7 74 1-74 24-97 (106)
106 1ttn_A DC-UBP, dendritic cell- 99.7 1.6E-16 5.6E-21 124.0 9.5 79 302-380 21-99 (106)
107 4a20_A Ubiquitin-like protein 99.7 1.8E-16 6.3E-21 121.0 9.2 75 302-376 17-95 (98)
108 3m63_B Ubiquitin domain-contai 99.7 2.3E-17 8E-22 127.4 4.3 92 54-148 8-99 (101)
109 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.9E-16 6.5E-21 123.7 9.2 77 303-380 16-92 (106)
110 1v5o_A 1700011N24RIK protein; 99.7 1.2E-16 4E-21 123.9 7.5 77 304-380 7-88 (102)
111 1yqb_A Ubiquilin 3; structural 99.7 1.5E-16 5.2E-21 122.6 8.0 74 1-75 23-96 (100)
112 2klc_A Ubiquilin-1; ubiquitin- 99.7 4.4E-16 1.5E-20 120.3 10.4 79 301-380 22-100 (101)
113 1wx8_A Riken cDNA 4931431F19; 99.7 1.3E-16 4.6E-21 122.4 6.8 74 1-75 18-91 (96)
114 1wgh_A Ubiquitin-like 3, HCG-1 99.7 3.5E-16 1.2E-20 122.7 9.2 78 302-379 14-101 (116)
115 1we6_A Splicing factor, putati 99.6 1.6E-16 5.5E-21 125.2 6.9 76 1-76 28-107 (111)
116 3u5e_m 60S ribosomal protein L 99.6 1.1E-17 3.6E-22 135.4 0.0 76 1-76 1-76 (128)
117 2ojr_A Ubiquitin; lanthide-bin 99.6 4.1E-16 1.4E-20 122.8 8.9 75 1-75 36-110 (111)
118 3u5c_f 40S ribosomal protein S 99.6 1.2E-17 4.2E-22 137.9 0.0 76 1-76 1-76 (152)
119 2gow_A HCG-1 protein, ubiquiti 99.6 4.8E-16 1.6E-20 123.7 8.0 78 303-380 16-103 (125)
120 2klc_A Ubiquilin-1; ubiquitin- 99.6 6.8E-16 2.3E-20 119.3 8.7 73 1-74 26-98 (101)
121 1j8c_A Ubiquitin-like protein 99.6 6.2E-16 2.1E-20 124.0 8.5 74 1-75 33-106 (125)
122 4dbg_A Ranbp-type and C3HC4-ty 99.6 1.4E-15 4.9E-20 116.4 9.9 73 304-376 24-99 (105)
123 1v5o_A 1700011N24RIK protein; 99.6 5.3E-16 1.8E-20 120.2 7.2 75 1-75 8-87 (102)
124 2xzm_9 RPS31E; ribosome, trans 99.6 2.9E-17 1E-21 139.1 0.0 71 1-76 1-71 (189)
125 1wx7_A Ubiquilin 3; ubiquitin- 99.6 9.7E-16 3.3E-20 119.7 7.9 74 1-75 18-91 (106)
126 2dzm_A FAS-associated factor 1 99.6 6.3E-16 2.2E-20 118.2 6.2 71 1-72 9-81 (100)
127 2io1_B Small ubiquitin-related 99.6 2.5E-15 8.6E-20 113.9 9.2 79 303-381 6-84 (94)
128 2dzj_A Synaptic glycoprotein S 99.6 6.2E-16 2.1E-20 116.0 5.7 69 1-69 11-85 (88)
129 2kdb_A Homocysteine-responsive 99.6 1.3E-15 4.3E-20 116.7 6.5 73 302-374 21-99 (99)
130 1we7_A SF3A1 protein; structur 99.6 2.6E-15 8.9E-20 119.0 7.7 75 2-76 27-111 (115)
131 2kd0_A LRR repeats and ubiquit 99.6 5.9E-15 2E-19 110.2 9.2 70 307-376 14-83 (85)
132 2xzm_9 RPS31E; ribosome, trans 99.6 1.3E-16 4.5E-21 135.1 0.0 72 305-381 1-72 (189)
133 2kd0_A LRR repeats and ubiquit 99.6 3.7E-15 1.3E-19 111.3 7.8 70 3-72 14-83 (85)
134 1wia_A Hypothetical ubiquitin- 99.6 3.5E-15 1.2E-19 114.2 7.4 71 1-74 8-79 (95)
135 1v5t_A 8430435I17RIK protein; 99.6 2.9E-15 9.8E-20 113.3 6.7 72 1-73 8-83 (90)
136 2daf_A FLJ35834 protein; hypot 99.6 1.1E-14 3.6E-19 112.5 9.2 74 303-376 14-88 (118)
137 4b6w_A Tubulin-specific chaper 99.6 3.9E-15 1.4E-19 111.0 6.6 66 7-72 11-83 (86)
138 1wgg_A Ubiquitin carboxyl-term 99.6 4.6E-15 1.6E-19 113.3 7.1 71 1-73 8-79 (96)
139 2io0_B Small ubiquitin-related 99.6 1.7E-14 5.9E-19 108.5 10.1 79 303-381 4-82 (91)
140 1wia_A Hypothetical ubiquitin- 99.6 8.9E-15 3E-19 111.9 8.6 74 303-379 6-80 (95)
141 1v5t_A 8430435I17RIK protein; 99.6 7.1E-15 2.4E-19 111.1 7.6 73 303-376 6-82 (90)
142 2daf_A FLJ35834 protein; hypot 99.6 1.2E-14 4.1E-19 112.2 8.9 77 76-152 15-92 (118)
143 2kjr_A CG11242; UBL, ubiquitin 99.6 8.1E-15 2.8E-19 111.4 7.7 69 2-70 17-93 (95)
144 2dzm_A FAS-associated factor 1 99.6 4.8E-15 1.7E-19 113.2 6.4 73 304-377 8-82 (100)
145 1x1m_A Ubiquitin-like protein 99.5 6.2E-15 2.1E-19 115.1 7.1 73 1-73 13-100 (107)
146 1wgg_A Ubiquitin carboxyl-term 99.5 1E-14 3.6E-19 111.4 7.7 71 304-376 7-78 (96)
147 1x1m_A Ubiquitin-like protein 99.5 1.5E-14 5E-19 113.0 8.3 76 303-378 11-101 (107)
148 2kjr_A CG11242; UBL, ubiquitin 99.5 4.5E-14 1.5E-18 107.2 9.4 71 304-374 15-93 (95)
149 1wxv_A BAG-family molecular ch 99.5 4.2E-14 1.4E-18 107.4 8.6 74 303-377 6-85 (92)
150 3ai5_A Yeast enhanced green fl 99.5 3.8E-14 1.3E-18 129.6 9.6 77 302-378 231-307 (307)
151 3ai5_A Yeast enhanced green fl 99.5 2.7E-14 9.2E-19 130.6 8.4 73 1-73 234-306 (307)
152 1wxv_A BAG-family molecular ch 99.5 4E-14 1.4E-18 107.5 7.7 72 1-73 8-85 (92)
153 1v86_A DNA segment, CHR 7, way 99.5 1.6E-14 5.5E-19 110.2 5.1 70 1-72 18-87 (95)
154 2d07_B Ubiquitin-like protein 99.5 9.5E-14 3.3E-18 105.1 9.3 79 302-380 15-93 (93)
155 2dzj_A Synaptic glycoprotein S 99.5 2.1E-14 7.1E-19 107.7 5.6 70 304-373 10-85 (88)
156 2io1_B Small ubiquitin-related 99.5 6.3E-14 2.2E-18 106.2 7.8 76 1-76 8-83 (94)
157 1v86_A DNA segment, CHR 7, way 99.5 2.3E-14 7.9E-19 109.3 5.1 71 304-376 17-87 (95)
158 2kj6_A Tubulin folding cofacto 99.5 3.8E-14 1.3E-18 107.9 6.3 70 2-71 16-94 (97)
159 4b6w_A Tubulin-specific chaper 99.5 4.8E-14 1.6E-18 105.1 6.7 65 312-376 12-83 (86)
160 1wz0_A Ubiquitin-like protein 99.5 9E-14 3.1E-18 107.1 7.6 79 303-381 23-101 (104)
161 2eke_C Ubiquitin-like protein 99.5 2.7E-13 9.4E-18 104.3 9.1 77 303-380 30-106 (106)
162 1oqy_A HHR23A, UV excision rep 99.4 8E-14 2.7E-18 131.2 7.3 74 1-74 8-85 (368)
163 2kj6_A Tubulin folding cofacto 99.4 1.5E-13 5E-18 104.7 7.4 71 305-375 15-94 (97)
164 1wf9_A NPL4 family protein; be 99.4 9.4E-14 3.2E-18 108.3 5.7 71 1-72 8-94 (107)
165 1oqy_A HHR23A, UV excision rep 99.4 1.2E-13 4.1E-18 130.0 7.0 78 303-380 6-87 (368)
166 2k8h_A Small ubiquitin protein 99.4 2.9E-13 9.9E-18 105.0 6.2 80 302-381 24-103 (110)
167 1wf9_A NPL4 family protein; be 99.4 1.8E-13 6.2E-18 106.7 5.0 72 304-376 7-94 (107)
168 1v6e_A Cytoskeleton-associated 99.4 4.3E-13 1.5E-17 102.3 6.9 70 2-71 9-86 (95)
169 2io0_B Small ubiquitin-related 99.4 1E-12 3.6E-17 98.7 8.4 76 1-76 6-81 (91)
170 1v6e_A Cytoskeleton-associated 99.4 7E-13 2.4E-17 101.1 7.5 71 305-375 8-86 (95)
171 1wm3_A Ubiquitin-like protein 99.4 2.3E-12 8E-17 92.8 9.1 70 305-374 2-71 (72)
172 1wm3_A Ubiquitin-like protein 99.4 1.7E-12 5.8E-17 93.5 7.6 70 1-70 2-71 (72)
173 1t0y_A Tubulin folding cofacto 99.3 1.6E-12 5.6E-17 103.7 7.5 71 2-72 8-86 (122)
174 1t0y_A Tubulin folding cofacto 99.3 3E-12 1E-16 102.2 8.6 71 305-375 7-85 (122)
175 2d07_B Ubiquitin-like protein 99.3 3.5E-12 1.2E-16 96.5 8.2 75 1-75 18-92 (93)
176 3a4r_A Nfatc2-interacting prot 99.3 9.4E-12 3.2E-16 91.2 9.5 73 302-374 5-78 (79)
177 2kzr_A Ubiquitin thioesterase 99.3 1.9E-12 6.5E-17 96.8 5.4 71 305-376 1-77 (86)
178 2kzr_A Ubiquitin thioesterase 99.3 2.1E-12 7.3E-17 96.5 5.4 71 1-72 1-77 (86)
179 1wz0_A Ubiquitin-like protein 99.3 4.7E-12 1.6E-16 97.4 7.0 76 1-76 25-100 (104)
180 3a4r_A Nfatc2-interacting prot 99.3 8.8E-12 3E-16 91.3 7.9 70 1-70 8-78 (79)
181 2k8h_A Small ubiquitin protein 99.3 3.8E-12 1.3E-16 98.7 5.9 77 1-77 27-103 (110)
182 2eke_C Ubiquitin-like protein 99.3 9.8E-12 3.3E-16 95.7 7.6 74 1-75 32-105 (106)
183 3shq_A UBLCP1; phosphatase, hy 99.2 2.5E-11 8.6E-16 112.6 6.5 76 75-151 4-82 (320)
184 3shq_A UBLCP1; phosphatase, hy 99.2 3.1E-11 1.1E-15 112.0 7.0 71 304-375 5-78 (320)
185 3kyd_D Small ubiquitin-related 99.2 2E-10 7E-15 89.1 10.4 77 303-379 39-115 (115)
186 3tix_A Ubiquitin-like protein 99.1 1.6E-10 5.6E-15 96.3 7.5 78 303-381 56-133 (207)
187 1wjn_A Tubulin-folding protein 99.1 3.5E-10 1.2E-14 86.4 8.8 72 305-376 10-92 (97)
188 3pge_A SUMO-modified prolifera 99.1 4.6E-10 1.6E-14 96.0 9.6 78 303-381 28-105 (200)
189 2ylm_A Ubiquitin carboxyl-term 99.0 2.4E-07 8.1E-12 91.9 29.0 349 11-360 36-503 (530)
190 3v7o_A Minor nucleoprotein VP3 99.0 5.8E-11 2E-15 100.4 0.3 80 301-381 18-97 (227)
191 1wjn_A Tubulin-folding protein 98.9 4.2E-09 1.4E-13 80.3 8.5 73 76-148 9-92 (97)
192 3kyd_D Small ubiquitin-related 98.8 1.7E-08 5.8E-13 78.3 9.9 74 75-148 39-112 (115)
193 3goe_A DNA repair protein RAD6 98.8 8.4E-08 2.9E-12 67.4 9.9 68 308-375 13-81 (82)
194 3pge_A SUMO-modified prolifera 98.6 9E-08 3.1E-12 81.8 8.9 78 74-152 27-104 (200)
195 3tix_A Ubiquitin-like protein 98.6 7.6E-08 2.6E-12 80.3 7.2 78 74-152 55-132 (207)
196 2pjh_A Protein NPL4, nuclear p 98.6 2.6E-08 8.8E-13 72.8 3.4 71 303-374 3-78 (80)
197 2jxx_A Nfatc2-interacting prot 98.6 2.8E-07 9.4E-12 69.4 8.9 72 303-374 24-96 (97)
198 3uf8_A Ubiquitin-like protein 98.5 2.3E-07 7.8E-12 80.8 9.0 80 301-381 18-97 (209)
199 3goe_A DNA repair protein RAD6 98.5 1.1E-06 3.7E-11 61.8 9.3 71 77-147 10-81 (82)
200 3ix6_A TS, tsase, thymidylate 98.5 1.7E-08 5.9E-13 93.6 0.2 80 301-381 18-97 (360)
201 4efo_A Serine/threonine-protei 98.4 8.2E-07 2.8E-11 66.0 7.8 46 6-51 19-64 (94)
202 3v7o_A Minor nucleoprotein VP3 98.4 3.2E-08 1.1E-12 83.7 0.1 75 1-76 22-96 (227)
203 2l76_A Nfatc2-interacting prot 98.4 2.5E-06 8.7E-11 63.0 9.0 72 303-375 20-91 (95)
204 2pjh_A Protein NPL4, nuclear p 98.2 7.8E-07 2.7E-11 64.8 3.6 71 75-146 3-78 (80)
205 2jxx_A Nfatc2-interacting prot 98.2 6.9E-06 2.4E-10 61.8 8.8 72 75-146 24-96 (97)
206 2ylm_A Ubiquitin carboxyl-term 98.2 0.00025 8.5E-09 70.2 22.0 265 3-267 133-479 (530)
207 3ivf_A Talin-1; FERM domain, c 98.2 6.5E-05 2.2E-09 71.3 16.8 136 238-376 12-167 (371)
208 4da1_A Protein phosphatase 1K, 98.1 3.5E-07 1.2E-11 87.6 0.0 77 304-381 30-106 (389)
209 4efo_A Serine/threonine-protei 98.1 1.1E-05 3.8E-10 59.9 7.8 55 82-136 19-75 (94)
210 3uf8_A Ubiquitin-like protein 98.1 2.3E-05 7.8E-10 68.1 10.5 93 148-242 17-109 (209)
211 3ivf_A Talin-1; FERM domain, c 98.0 0.00022 7.7E-09 67.6 17.9 142 78-223 5-166 (371)
212 2al3_A TUG long isoform; TUG U 98.0 1.6E-05 5.6E-10 58.1 7.2 74 303-376 8-81 (90)
213 2al3_A TUG long isoform; TUG U 97.9 3.2E-05 1.1E-09 56.6 7.3 77 150-226 7-83 (90)
214 2l76_A Nfatc2-interacting prot 97.9 5.9E-05 2E-09 55.7 8.4 73 152-225 21-93 (95)
215 3ix6_A TS, tsase, thymidylate 97.9 1.6E-06 5.5E-11 80.4 -0.0 81 73-154 18-98 (360)
216 2kc2_A Talin-1, F1; FERM, adhe 97.8 3.1E-05 1.1E-09 61.0 5.9 71 306-376 13-122 (128)
217 2bps_A YUKD protein; ubiquitin 97.7 0.00011 3.9E-09 52.9 6.7 62 312-373 14-80 (81)
218 2kc2_A Talin-1, F1; FERM, adhe 97.5 0.00013 4.6E-09 57.4 6.1 69 3-71 14-121 (128)
219 4da1_A Protein phosphatase 1K, 97.5 1.6E-05 5.4E-10 76.1 0.0 81 75-156 29-109 (389)
220 3qx1_A FAS-associated factor 1 97.2 0.0013 4.6E-08 48.0 7.9 70 305-375 8-82 (84)
221 3qx1_A FAS-associated factor 1 97.0 0.0038 1.3E-07 45.6 8.6 70 76-146 7-81 (84)
222 2bps_A YUKD protein; ubiquitin 97.0 0.0019 6.4E-08 46.5 6.6 69 77-145 5-80 (81)
223 1wj4_A KIAA0794 protein; UBX d 96.5 0.018 6.3E-07 45.2 9.5 71 75-146 42-117 (124)
224 2dzk_A UBX domain-containing p 96.5 0.015 5.1E-07 44.6 8.7 73 76-148 13-90 (109)
225 2dzk_A UBX domain-containing p 96.4 0.013 4.5E-07 44.9 8.1 73 304-376 13-90 (109)
226 1wj4_A KIAA0794 protein; UBX d 96.3 0.0098 3.4E-07 46.7 6.8 71 304-375 43-118 (124)
227 1ryj_A Unknown; beta/alpha pro 96.2 0.041 1.4E-06 38.4 8.9 67 304-380 4-70 (70)
228 4e71_A Plexin-B2, MM1; transme 95.7 0.017 5.7E-07 44.0 5.3 64 9-72 22-110 (111)
229 3jyu_A Ubiquitin carboxyl-term 95.6 0.1 3.5E-06 45.6 11.2 65 316-380 153-224 (231)
230 4e71_A Plexin-B2, MM1; transme 95.6 0.067 2.3E-06 40.6 8.5 63 314-376 23-110 (111)
231 2daj_A KIAA0977 protein, COBL- 95.3 0.029 9.8E-07 40.0 5.1 62 306-367 12-76 (91)
232 2cr5_A Reproduction 8; UBX dom 95.3 0.054 1.9E-06 41.4 7.1 71 76-147 23-97 (109)
233 2cr5_A Reproduction 8; UBX dom 95.1 0.067 2.3E-06 40.9 7.3 70 305-375 24-97 (109)
234 3h6n_A Plexin-D1; structural g 95.0 0.12 4.3E-06 40.0 8.3 67 6-72 12-104 (127)
235 4a3p_A Ubiquitin carboxyl-term 94.8 0.11 3.9E-06 44.9 8.7 65 316-380 141-212 (217)
236 1s3s_G P47 protein; AAA ATPase 94.8 0.062 2.1E-06 42.3 6.4 68 304-371 52-123 (127)
237 2r2o_A Plexin-B1; effector dom 94.7 0.093 3.2E-06 41.3 7.1 64 10-73 40-129 (138)
238 1s3s_G P47 protein; AAA ATPase 94.3 0.079 2.7E-06 41.7 5.9 67 76-142 52-122 (127)
239 2l32_A Small archaeal modifier 94.0 0.099 3.4E-06 36.9 5.4 66 305-380 1-66 (74)
240 1tyg_B YJBS; alpha beta barrel 94.0 0.13 4.6E-06 37.4 6.2 68 303-380 19-87 (87)
241 3h6n_A Plexin-D1; structural g 94.0 0.42 1.4E-05 37.0 9.2 64 313-376 15-104 (127)
242 2l32_A Small archaeal modifier 93.9 0.18 6.3E-06 35.4 6.5 59 230-298 2-60 (74)
243 1vjk_A Molybdopterin convertin 93.7 0.47 1.6E-05 35.2 9.0 73 303-380 8-98 (98)
244 2daj_A KIAA0977 protein, COBL- 93.5 0.17 5.8E-06 36.1 5.7 63 77-139 11-76 (91)
245 4e74_A Plexin-A4; RBD, structu 93.5 0.19 6.4E-06 38.6 6.4 63 10-72 26-114 (117)
246 4e74_A Plexin-A4; RBD, structu 93.5 0.3 1E-05 37.4 7.6 64 314-377 26-115 (117)
247 2juo_A GA-binding protein alph 93.5 0.25 8.4E-06 35.1 6.4 59 241-299 5-63 (89)
248 3rpf_C Molybdopterin convertin 93.5 0.29 1E-05 34.3 7.1 58 318-380 15-74 (74)
249 2r2o_A Plexin-B1; effector dom 93.0 0.42 1.4E-05 37.6 7.9 63 315-377 41-129 (138)
250 2juo_A GA-binding protein alph 92.8 0.62 2.1E-05 33.1 7.6 61 317-377 5-65 (89)
251 1oey_A P67-PHOX, neutrophil cy 92.6 0.24 8.1E-06 35.6 5.4 46 304-351 5-50 (83)
252 3po0_A Small archaeal modifier 91.2 1 3.4E-05 32.6 7.8 61 315-380 18-89 (89)
253 3jyu_A Ubiquitin carboxyl-term 91.2 0.68 2.3E-05 40.3 8.0 65 164-228 153-224 (231)
254 1f0z_A THis protein; ubiquitin 91.1 0.33 1.1E-05 33.2 4.8 62 312-380 5-66 (66)
255 2cu3_A Unknown function protei 91.1 0.46 1.6E-05 32.2 5.5 61 312-380 4-64 (64)
256 2kl0_A Putative thiamin biosyn 91.1 0.3 1E-05 34.2 4.6 62 312-381 5-66 (73)
257 4a3p_A Ubiquitin carboxyl-term 91.0 0.51 1.7E-05 40.7 7.0 64 164-227 141-211 (217)
258 1oey_A P67-PHOX, neutrophil cy 90.7 0.75 2.6E-05 32.9 6.4 48 75-124 4-51 (83)
259 1ryj_A Unknown; beta/alpha pro 90.5 2.2 7.5E-05 29.3 8.6 64 152-225 4-67 (70)
260 3kuz_A Plexin-C1; structural g 90.1 0.53 1.8E-05 36.4 5.4 60 11-70 39-124 (126)
261 1fm0_D Molybdopterin convertin 89.9 0.7 2.4E-05 32.7 5.9 59 316-380 18-81 (81)
262 2k5p_A THis protein, thiamine- 89.8 0.34 1.2E-05 34.4 4.0 63 312-381 5-70 (78)
263 3kuz_A Plexin-C1; structural g 89.4 2.8 9.6E-05 32.3 9.0 61 315-375 39-125 (126)
264 3dwg_C 9.5 kDa culture filtrat 89.2 2.1 7.3E-05 31.1 8.2 65 314-380 16-93 (93)
265 2q5w_D Molybdopterin convertin 88.7 0.74 2.5E-05 32.2 5.2 59 316-380 17-77 (77)
266 1h4r_A Merlin; FERM, neurofibr 87.6 2.6 8.9E-05 38.2 9.5 74 302-376 20-98 (314)
267 1ef1_A Moesin; membrane, FERM 87.6 2.3 8E-05 38.1 9.1 72 304-376 1-78 (294)
268 1vjk_A Molybdopterin convertin 87.0 4.5 0.00015 29.7 8.8 69 151-224 8-94 (98)
269 2kvr_A Ubiquitin carboxyl-term 86.7 0.63 2.1E-05 36.6 4.0 36 11-46 56-91 (130)
270 2kvr_A Ubiquitin carboxyl-term 85.5 0.65 2.2E-05 36.5 3.6 33 317-349 58-90 (130)
271 3hm6_X Plexin-B1; structural g 83.4 2.1 7.3E-05 42.1 6.8 63 11-73 274-362 (644)
272 2g1e_A Hypothetical protein TA 82.7 4.1 0.00014 29.2 6.7 62 318-380 18-90 (90)
273 1tyg_B YJBS; alpha beta barrel 82.6 4.1 0.00014 29.4 6.6 65 151-225 19-84 (87)
274 1rws_A Hypothetical protein PF 82.2 0.4 1.4E-05 33.9 1.0 54 318-380 24-77 (77)
275 3rpf_C Molybdopterin convertin 82.0 5.5 0.00019 27.5 6.9 57 166-227 15-73 (74)
276 1wgk_A Riken cDNA 2900073H19 p 81.8 9.2 0.00031 29.0 8.6 75 304-381 11-109 (114)
277 2kmc_A Fermitin family homolog 81.5 7.2 0.00025 28.6 7.3 71 305-375 20-98 (102)
278 2kmc_A Fermitin family homolog 81.3 8.3 0.00028 28.3 7.6 71 2-72 21-99 (102)
279 3ig3_A Plxna3 protein; plexin 80.7 5.9 0.0002 39.0 8.7 64 10-73 246-335 (627)
280 3ig3_A Plxna3 protein; plexin 80.6 7.9 0.00027 38.1 9.6 64 314-377 246-335 (627)
281 2i1j_A Moesin; FERM, coiled-co 80.2 6.1 0.00021 39.2 9.0 72 304-376 4-81 (575)
282 1vd2_A Protein kinase C, IOTA 79.3 5.8 0.0002 28.7 6.3 46 305-351 7-53 (89)
283 2qjl_A URM1, ubiquitin-related 79.0 14 0.00047 27.1 8.7 63 315-380 20-99 (99)
284 3po0_A Small archaeal modifier 78.5 12 0.0004 26.7 8.0 59 163-226 18-87 (89)
285 1vd2_A Protein kinase C, IOTA 78.4 7.3 0.00025 28.2 6.6 52 232-284 8-61 (89)
286 3u52_E Phenol hydroxylase comp 77.6 9.3 0.00032 29.0 7.1 65 316-380 39-113 (119)
287 3qij_A Protein 4.1; cytoskelet 77.2 6.6 0.00022 35.3 7.6 75 302-376 15-95 (296)
288 3hm6_X Plexin-B1; structural g 76.4 10 0.00034 37.5 8.9 63 315-377 274-362 (644)
289 1wgr_A Growth factor receptor- 76.2 4.5 0.00015 30.0 5.1 70 304-373 9-89 (100)
290 1ef1_A Moesin; membrane, FERM 73.9 13 0.00043 33.2 8.6 71 153-224 2-78 (294)
291 1h4r_A Merlin; FERM, neurofibr 73.6 12 0.00041 33.7 8.5 74 150-224 20-98 (314)
292 4eut_A Serine/threonine-protei 71.0 17 0.00058 33.7 9.2 44 7-50 318-361 (396)
293 1y8x_B Ubiquitin-activating en 70.7 7.9 0.00027 28.6 5.2 59 316-374 6-82 (98)
294 2i1j_A Moesin; FERM, coiled-co 69.5 15 0.00052 36.3 8.7 73 151-224 3-81 (575)
295 3qa8_A MGC80376 protein; kinas 69.4 3.4 0.00012 41.9 4.0 53 312-364 319-372 (676)
296 2kl0_A Putative thiamin biosyn 69.2 4.6 0.00016 28.0 3.5 57 236-300 5-61 (73)
297 3dwg_C 9.5 kDa culture filtrat 69.0 23 0.00079 25.3 7.6 60 166-227 20-92 (93)
298 2kmm_A Guanosine-3',5'-BIS(dip 69.0 12 0.0004 25.4 5.7 63 305-376 1-63 (73)
299 1fm0_D Molybdopterin convertin 67.8 11 0.00039 26.1 5.6 57 163-225 17-78 (81)
300 2l52_A Methanosarcina acetivor 67.8 20 0.00067 26.3 7.0 73 305-380 4-99 (99)
301 1ip9_A BEM1 protein; ubiquitin 67.7 14 0.00048 26.3 5.7 42 304-348 12-53 (85)
302 1f0z_A THis protein; ubiquitin 66.7 8.9 0.0003 25.7 4.5 58 161-225 6-63 (66)
303 1q1o_A Cell division control p 66.2 10 0.00036 27.9 5.0 39 75-113 4-49 (98)
304 1wgr_A Growth factor receptor- 65.7 16 0.00056 27.0 6.1 62 74-135 7-75 (100)
305 2inc_C TOUB protein; DIIRON, 4 64.8 34 0.0012 24.1 8.4 61 316-376 14-82 (83)
306 1wgy_A RAP guanine nucleotide 63.8 32 0.0011 25.5 7.4 67 310-376 15-86 (104)
307 2q5w_D Molybdopterin convertin 63.4 12 0.00041 25.7 4.9 57 163-225 16-74 (77)
308 4eut_A Serine/threonine-protei 62.8 13 0.00044 34.5 6.5 52 313-364 320-373 (396)
309 1wgy_A RAP guanine nucleotide 62.0 45 0.0015 24.7 7.9 69 157-225 14-87 (104)
310 3onh_A Ubiquitin-activating en 61.3 21 0.00072 27.5 6.1 56 318-374 9-77 (127)
311 2inc_C TOUB protein; DIIRON, 4 59.7 43 0.0015 23.6 7.5 59 165-223 15-81 (83)
312 2k9x_A Tburm1, uncharacterized 58.6 8.5 0.00029 29.0 3.5 65 163-229 21-103 (110)
313 3hvz_A Uncharacterized protein 58.2 16 0.00054 25.6 4.6 63 229-300 6-68 (78)
314 3ge3_C Toluene-4-monooxygenase 58.1 46 0.0016 23.5 6.8 60 316-375 16-82 (84)
315 1rws_A Hypothetical protein PF 56.7 4.9 0.00017 28.1 1.8 48 243-299 25-72 (77)
316 2kmm_A Guanosine-3',5'-BIS(dip 56.7 13 0.00046 25.1 4.1 61 1-70 1-61 (73)
317 2cu3_A Unknown function protei 56.1 27 0.00092 23.1 5.4 57 161-225 5-61 (64)
318 3qa8_A MGC80376 protein; kinas 56.0 9.8 0.00033 38.5 4.5 53 8-60 319-372 (676)
319 1ip9_A BEM1 protein; ubiquitin 53.9 46 0.0016 23.6 6.3 46 153-200 13-58 (85)
320 2k5p_A THis protein, thiamine- 53.4 11 0.00037 26.4 3.1 57 236-299 5-64 (78)
321 1q1o_A Cell division control p 53.3 17 0.00057 26.8 4.2 46 305-350 6-63 (98)
322 2c7h_A RBBP6, retinoblastoma-b 52.6 60 0.0021 23.1 7.7 61 316-380 19-84 (86)
323 2g1e_A Hypothetical protein TA 52.6 49 0.0017 23.2 6.8 58 167-225 19-87 (90)
324 1v8c_A MOAD related protein; r 52.0 20 0.00069 29.2 5.0 62 318-381 17-88 (168)
325 2l05_A Serine/threonine-protei 51.6 28 0.00097 25.2 5.0 46 304-349 17-62 (95)
326 3ge3_C Toluene-4-monooxygenase 50.4 59 0.002 22.9 6.4 59 165-223 17-82 (84)
327 2k9x_A Tburm1, uncharacterized 49.8 11 0.00036 28.5 2.8 75 304-380 4-102 (110)
328 2lgx_A Fermitin family homolog 49.1 5.8 0.0002 29.5 1.1 68 306-374 28-100 (112)
329 1wgk_A Riken cDNA 2900073H19 p 48.2 84 0.0029 23.6 8.2 75 77-152 12-108 (114)
330 4gmv_A RAS-associated and plec 47.4 32 0.0011 30.6 6.0 57 306-362 33-96 (281)
331 2hj1_A Hypothetical protein; s 47.4 45 0.0015 24.4 5.8 56 239-299 26-84 (97)
332 1y8x_B Ubiquitin-activating en 47.4 16 0.00055 26.9 3.3 59 88-146 6-82 (98)
333 2hj1_A Hypothetical protein; s 47.4 65 0.0022 23.5 6.7 68 305-377 13-86 (97)
334 2lgx_A Fermitin family homolog 46.7 9.6 0.00033 28.4 2.0 70 2-72 28-102 (112)
335 3qij_A Protein 4.1; cytoskelet 46.6 26 0.00087 31.3 5.3 40 1-40 18-57 (296)
336 1wxm_A A-RAF proto-oncogene se 46.1 46 0.0016 23.7 5.4 43 307-349 10-52 (86)
337 2eel_A Cell death activator CI 46.0 30 0.001 25.0 4.5 49 325-376 28-78 (91)
338 3au4_A Myosin-X; protein-prote 45.6 37 0.0012 33.3 6.7 58 304-361 216-279 (555)
339 1j0g_A Hypothetical protein 18 44.7 65 0.0022 22.5 5.7 65 316-380 25-90 (92)
340 1c1y_B Proto-onkogene serine/t 44.7 44 0.0015 23.2 5.0 42 307-348 4-45 (77)
341 3onh_A Ubiquitin-activating en 43.2 49 0.0017 25.4 5.5 52 172-224 19-79 (127)
342 2zjd_A Microtubule-associated 42.3 68 0.0023 24.8 6.4 76 73-148 32-119 (130)
343 3r8s_T 50S ribosomal protein L 41.0 38 0.0013 24.6 4.5 39 314-352 27-66 (93)
344 1f2r_I Inhibitor of caspase-ac 39.8 34 0.0011 25.2 4.0 48 325-375 37-88 (100)
345 2v1y_A Phosphatidylinositol-4, 38.7 69 0.0024 23.9 5.6 35 75-109 18-52 (108)
346 2c7h_A RBBP6, retinoblastoma-b 38.4 1.1E+02 0.0036 21.8 7.2 45 154-198 8-55 (86)
347 2zjd_A Microtubule-associated 38.2 74 0.0025 24.6 6.0 59 166-224 56-119 (130)
348 3hk0_A Growth factor receptor- 37.4 42 0.0014 29.3 5.0 56 306-361 10-72 (256)
349 3tca_A Amyloid beta A4 precurs 36.6 67 0.0023 28.0 6.5 45 305-349 35-79 (291)
350 2j58_A WZA, outer membrane lip 36.3 2.5E+02 0.0086 25.6 16.8 133 96-257 118-264 (359)
351 3pvl_A Myosin VIIA isoform 1; 35.8 41 0.0014 33.8 5.4 47 303-349 262-309 (655)
352 2zjr_Q 50S ribosomal protein L 35.8 42 0.0015 24.4 4.0 33 314-347 23-55 (95)
353 1vq8_S 50S ribosomal protein L 35.7 37 0.0013 24.2 3.6 35 314-348 22-56 (85)
354 2qjl_A URM1, ubiquitin-related 35.7 1.2E+02 0.0041 21.8 8.4 63 163-226 20-97 (99)
355 3cjl_A Domain of unknown funct 35.5 39 0.0013 24.2 3.7 40 1-40 6-47 (88)
356 3h9d_A ATG8, microtubule-assoc 35.5 65 0.0022 24.5 5.2 58 318-375 51-112 (119)
357 1pqs_A Cell division control p 34.2 30 0.001 24.1 2.9 35 316-350 3-42 (77)
358 3h9d_A ATG8, microtubule-assoc 34.0 1.1E+02 0.0038 23.1 6.3 74 74-147 29-112 (119)
359 2r2q_A Gamma-aminobutyric acid 33.7 55 0.0019 24.4 4.5 46 166-211 47-93 (110)
360 2r2q_A Gamma-aminobutyric acid 33.6 55 0.0019 24.4 4.5 62 74-135 25-93 (110)
361 3u52_E Phenol hydroxylase comp 31.8 1.7E+02 0.0056 22.2 6.7 60 87-146 38-107 (119)
362 3lxf_A Ferredoxin; iron, iron- 31.3 50 0.0017 24.2 3.9 32 2-37 2-33 (104)
363 1pqs_A Cell division control p 30.7 40 0.0014 23.5 3.0 26 12-37 3-28 (77)
364 3j21_T 50S ribosomal protein L 30.6 52 0.0018 23.5 3.7 35 314-348 23-57 (86)
365 4gmv_A RAS-associated and plec 30.4 1.3E+02 0.0045 26.6 7.1 59 76-134 31-96 (281)
366 2dhz_A RAP guanine nucleotide 30.0 98 0.0033 23.5 5.3 68 157-224 14-92 (120)
367 2dhz_A RAP guanine nucleotide 30.0 1E+02 0.0036 23.4 5.5 68 79-146 12-90 (120)
368 3au4_A Myosin-X; protein-prote 29.9 68 0.0023 31.3 5.8 37 2-38 218-254 (555)
369 3tve_T 50S ribosomal protein L 29.5 49 0.0017 23.9 3.5 39 314-352 21-60 (92)
370 1rax_A Protein (RA-domain of R 29.0 1.1E+02 0.0036 23.0 5.2 73 2-74 32-112 (115)
371 3rui_B Autophagy-related prote 28.6 1.4E+02 0.0048 22.5 6.1 61 74-134 28-95 (118)
372 3ny5_A Serine/threonine-protei 28.4 1.1E+02 0.0037 22.2 5.0 44 307-350 16-59 (96)
373 3he4_B Synzip5; heterodimeric 27.5 31 0.0011 20.2 1.6 15 20-34 2-16 (46)
374 3m95_A Autophagy related prote 27.4 70 0.0024 24.5 4.2 46 317-362 55-101 (125)
375 1eo6_A GATE-16, golgi-associat 27.4 1.4E+02 0.0047 22.5 5.9 75 74-148 26-110 (117)
376 2v1y_A Phosphatidylinositol-4, 27.1 99 0.0034 23.0 4.8 70 306-376 21-104 (108)
377 1rrb_A RAF-1 RBD, RAF proto-on 26.8 1.3E+02 0.0045 22.2 5.3 42 307-348 21-62 (107)
378 3rui_B Autophagy-related prote 26.1 1.7E+02 0.0056 22.1 6.1 58 166-223 50-111 (118)
379 3jtz_A Integrase; four strande 25.8 1.8E+02 0.006 20.5 6.1 58 287-344 18-83 (88)
380 2j58_A WZA, outer membrane lip 25.6 3.8E+02 0.013 24.3 12.3 173 171-375 117-324 (359)
381 2eki_A DRG 1, developmentally- 25.4 1.1E+02 0.0038 22.1 4.6 57 243-300 29-87 (93)
382 1eo6_A GATE-16, golgi-associat 24.5 1.6E+02 0.0055 22.1 5.7 59 166-224 48-110 (117)
383 1j0g_A Hypothetical protein 18 24.0 1.9E+02 0.0064 20.2 6.6 60 242-301 27-87 (92)
384 4eku_A Protein-tyrosine kinase 23.8 1.3E+02 0.0046 27.9 6.3 51 312-362 35-96 (392)
385 3tca_A Amyloid beta A4 precurs 23.5 1.5E+02 0.0051 25.7 6.4 43 3-45 37-79 (291)
386 2bt6_A Adrenodoxin 1; rutheniu 23.2 83 0.0028 23.0 3.9 34 2-39 8-41 (108)
387 4i3s_G Outer domain of HIV-1 G 22.2 1.7E+02 0.0059 24.1 5.8 72 265-338 2-77 (190)
388 3pvl_A Myosin VIIA isoform 1; 22.2 1.5E+02 0.005 29.7 6.6 47 75-121 262-309 (655)
389 3p42_A Predicted protein; beta 21.6 64 0.0022 27.7 3.3 89 285-376 111-203 (236)
390 3r8s_T 50S ribosomal protein L 21.1 1.7E+02 0.0058 21.1 5.0 40 10-49 27-67 (93)
391 2k5l_A FEOA; structure, NESG, 20.8 1.2E+02 0.0041 20.9 4.1 36 206-242 26-61 (81)
392 3hk0_A Growth factor receptor- 20.6 2.2E+02 0.0074 24.7 6.5 57 78-134 10-73 (256)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=1.3e-36 Score=257.33 Aligned_cols=152 Identities=34% Similarity=0.508 Sum_probs=147.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEE-e-cCeeccCCCccccccccccccceeeEe-ecCCe
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 77 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~-~-~g~~L~d~~tl~~~~i~~~s~i~l~~~-~~~~~ 77 (381)
|+|+|++++|++++++|.+++||.++|++|++++|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++|++++ ++++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 89999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred EEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEeeecc
Q 016849 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (381)
Q Consensus 78 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~~~~ 152 (381)
+|+|++.+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+++++++
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998775
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=7.2e-36 Score=255.88 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=145.6
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCCeEEE
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~~~i~ 80 (381)
|+|+|++++|++++++|.+++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++.+++|.++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEeeecc
Q 016849 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (381)
Q Consensus 81 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~~~~ 152 (381)
|++.+|+.+.+++.+++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+++++++
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999887764
No 3
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=1.7e-35 Score=250.48 Aligned_cols=153 Identities=34% Similarity=0.493 Sum_probs=146.8
Q ss_pred eeeeEEeccCcEEEEEEecCCcHHHHHHhhhhccCCCcccceee-e-cCccccCCccccccccccCceeeEEEE-eecCe
Q 016849 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 305 (381)
Q Consensus 229 ~~i~vk~~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~-~-~g~~l~d~~tl~~y~i~~~~tl~l~~~-~~~~m 305 (381)
++|+|++++|+++++++++++||++||++|++.+|+|+++|+|. | +|+.|+|+.+|++|+|.+|++|++..+ .+.+|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 68899999999999999999999999999999999999999999 9 799999999999999999999999998 48899
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||+
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999995
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=247.65 Aligned_cols=154 Identities=95% Similarity=1.303 Sum_probs=146.3
Q ss_pred cceeeeEEeccCcEEEEEEecCCcHHHHHHhhhhccCCCcccceeeecCccccCCccccccccccCceeeEEEEeecCee
Q 016849 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 306 (381)
Q Consensus 227 ~~~~i~vk~~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~~~~~~~m~ 306 (381)
..++|+|++++|+++.+++++++||.+||++|++++|+|+++|+|.|+|+.|+|+.+|++|+|.++++|++..+....|.
T Consensus 19 ~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~ 98 (172)
T 3u30_A 19 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ 98 (172)
T ss_dssp CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccccc
Confidence 55899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|+|+..+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|++|++||
T Consensus 99 i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 99 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=6.1e-34 Score=239.20 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCCeEEE
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~~~i~ 80 (381)
|+|+|++++|++++++|.+++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++.+.+++|.|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEeeecc
Q 016849 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (381)
Q Consensus 81 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~~~~ 152 (381)
|++.+|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++||++++++++
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988764
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=5.5e-33 Score=233.36 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=147.6
Q ss_pred eeeeEEeccCcEEEEEEecCCcHHHHHHhhhhccCCCcccceeeecCccccCCccccccccccCceeeEEEEeecCeeeE
Q 016849 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 308 (381)
Q Consensus 229 ~~i~vk~~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~~~~~~~m~I~ 308 (381)
|+|+|++.+|+++++++++++||++||++|++++|+|+++|+|.|+|+.|+|+.+|++|++.+|++||+..+....|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred EEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 309 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 309 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|+..+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|++|++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.84 E-value=6.1e-21 Score=141.99 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.6
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~ 70 (381)
|+|||++++|+++++++.|+|||.+||++|++++|+|+++|+|+|.|++|+|+.||++|+|++++++||.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 6999999999999999999999999999999999999999999999999999999999999999999985
No 8
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=138.13 Aligned_cols=78 Identities=35% Similarity=0.561 Sum_probs=75.5
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 379 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~G 379 (381)
.++|+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|++|
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999999998
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.82 E-value=3.4e-20 Score=140.00 Aligned_cols=77 Identities=56% Similarity=0.917 Sum_probs=73.1
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
|+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|++|++||.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999994
No 10
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.81 E-value=1e-19 Score=135.36 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=71.1
Q ss_pred EEEEeecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 297 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 297 l~~~~~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
|+....+.|+|+|++..|+++.++|+|++||.+||++|+++.|+|+++|+|.|+|+.|+|+.||++|+|++|++|+|..
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 3445567799999999999999999999999999999999999999999999999999999999999999999999874
No 11
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.80 E-value=9.7e-20 Score=134.80 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=72.7
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++++|++++++|.+++||.++|++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998654
No 12
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.80 E-value=1.6e-19 Score=132.56 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.9
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|+|+|+..+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 13
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.80 E-value=1.2e-19 Score=137.29 Aligned_cols=79 Identities=57% Similarity=0.963 Sum_probs=76.8
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
..+|+|+|++.+|+++.++|++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999998
No 14
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.80 E-value=1.3e-19 Score=134.12 Aligned_cols=77 Identities=18% Similarity=0.425 Sum_probs=74.7
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.|+|+|++.+|+++.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|++++|++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998
No 15
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=136.10 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=72.2
Q ss_pred ccccCceeeEEEEeecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCC
Q 016849 288 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 367 (381)
Q Consensus 288 ~i~~~~tl~l~~~~~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~ 367 (381)
|..+++++++.......|+|+|+..+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||| +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 456788899988888889999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCEEEEEEe
Q 016849 368 ESTLHLVLR 376 (381)
Q Consensus 368 ~~~i~l~~~ 376 (381)
|++|||++|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999986
No 16
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.8e-19 Score=135.32 Aligned_cols=79 Identities=77% Similarity=1.096 Sum_probs=73.2
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
..|+|+|+..+|+++.++|++++||++||++|++.+++|++.|+|+|+|+.|+|+.+|++|+|+++++|++++|++||+
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999999985
No 17
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=9.2e-20 Score=138.58 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=68.6
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~ 70 (381)
|+|+|++++|++++++|.|+|||.+||++|++++|+|+++|+|+|.|++|+|+.||++|+|.+++++||+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999985
No 18
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.1e-19 Score=138.55 Aligned_cols=79 Identities=94% Similarity=1.267 Sum_probs=75.9
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
...|+|+|+..+|+++.++|++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|++|++||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999998
No 19
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2.5e-19 Score=135.27 Aligned_cols=78 Identities=86% Similarity=1.245 Sum_probs=70.4
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
.|+|++++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|++||.
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999995
No 20
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.79 E-value=4.1e-19 Score=130.31 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=74.7
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|+|+|+..+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 21
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.79 E-value=2.3e-19 Score=135.40 Aligned_cols=77 Identities=56% Similarity=0.924 Sum_probs=73.0
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCCe
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~~ 77 (381)
|+|+|++++|++++++|.+++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988764
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.2e-19 Score=133.28 Aligned_cols=79 Identities=89% Similarity=1.180 Sum_probs=75.7
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
.+|+|+|+..+|+++.+++++++||.+||++|++.+++|++.|+|+|+|+.|+|+.+|++|+|+++++|++++|++||.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999999984
No 23
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.79 E-value=2.8e-19 Score=137.46 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=76.7
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
+..|+|+|++.+|+++.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|++|++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 4459999999999999999999999999999999999999999999999999999999999999999999999999998
No 24
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.3e-19 Score=135.45 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=69.8
Q ss_pred CEEEEEcCCCcEEEEEee--cCccHHHHHHHH-hhhcCCCCccceEEecCeeccCCCccccccc-cccccceeeEee
Q 016849 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~--~~dtv~~~K~~i-~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i-~~~s~i~l~~~~ 73 (381)
|+|+|++++|++++++|+ +++||.++|++| ++++|+|+++|+|+|+|+.|+|+.||++|+| .+++++++..++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999999877 999999999999 9999999999999999999999999999999 799999998764
No 25
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=140.49 Aligned_cols=93 Identities=80% Similarity=1.042 Sum_probs=85.4
Q ss_pred ccccCceeeEEEEe--------ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCc
Q 016849 288 NIQKESTLHLVLRL--------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 359 (381)
Q Consensus 288 ~i~~~~tl~l~~~~--------~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~ 359 (381)
++.+|+++++..+. ...|+|+|+..+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~t 90 (111)
T 2ojr_A 11 GWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 90 (111)
T ss_dssp SSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCB
T ss_pred ceecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCc
Confidence 56778888877553 2469999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEEEEecCCC
Q 016849 360 LADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 360 L~~~~i~~~~~i~l~~~~~GG 380 (381)
|++|||++|++|+|++|++||
T Consensus 91 L~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 91 LSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp TTTTTCCTTCEEEEEECCCC-
T ss_pred HHHcCCCCCCEEEEEEeCCCC
Confidence 999999999999999999998
No 26
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.2e-19 Score=133.91 Aligned_cols=80 Identities=34% Similarity=0.518 Sum_probs=77.2
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
...|+|+|+..+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++||.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999994
No 27
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=2.7e-19 Score=133.49 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.7
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCee-ccCCCccccccccccccceeeEee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~-L~d~~tl~~~~i~~~s~i~l~~~~ 73 (381)
|+|+|++++|++++++|++++||.+||++|++++|+|+++|+|+|+|+. |+|+.+|++|+|.+++++++++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998753
No 28
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.78 E-value=5.9e-19 Score=135.67 Aligned_cols=77 Identities=94% Similarity=1.249 Sum_probs=74.1
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|++|++||+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999995
No 29
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=8.2e-21 Score=150.25 Aligned_cols=100 Identities=75% Similarity=1.000 Sum_probs=92.5
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCCeEEE
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~~~i~ 80 (381)
.+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.++++++.++
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~ 89 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGG 89 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceee
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred EE---ccCCcEEEEEEeCCCCHH
Q 016849 81 VK---TLTGKTITLEVESSDTID 100 (381)
Q Consensus 81 v~---~~~g~~~~l~v~~~~tV~ 100 (381)
++ +..|+++++++.+++||.
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~ 112 (114)
T 2kdi_A 90 AADEEELIRKAIELSLKESRNSG 112 (114)
T ss_dssp SCSSSHHHHHHHHSSSHHHHHGG
T ss_pred ccccccccCceEEEEeccccccC
Confidence 87 556777888887777664
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.77 E-value=4.9e-19 Score=133.68 Aligned_cols=79 Identities=35% Similarity=0.591 Sum_probs=72.2
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
..|+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|+.+++||.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999983
No 31
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.77 E-value=6.8e-19 Score=134.18 Aligned_cols=77 Identities=38% Similarity=0.647 Sum_probs=72.7
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
...|+|+|+. |+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|++|++||
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4569999998 8999999999999999999999999999999999999999999999999999999999999999998
No 32
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.77 E-value=1.3e-18 Score=136.94 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=75.3
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
..|+|+|+..+|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|++|++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 459999999999999999999999999999999999999999999999999999999999999999999999999998
No 33
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.7e-18 Score=131.11 Aligned_cols=79 Identities=37% Similarity=0.617 Sum_probs=75.9
Q ss_pred cCeeeEEEeeCC-cEEEE-EeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 303 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 303 ~~m~I~v~~~~g-~~~~~-~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
..|+|+|+..+| +++.+ +|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|++|++||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 469999999999 79999 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 016849 381 F 381 (381)
Q Consensus 381 ~ 381 (381)
.
T Consensus 86 ~ 86 (89)
T 1wy8_A 86 P 86 (89)
T ss_dssp S
T ss_pred C
Confidence 5
No 34
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.77 E-value=6.2e-19 Score=137.14 Aligned_cols=75 Identities=29% Similarity=0.437 Sum_probs=71.4
Q ss_pred CEEEEEcCCCc-EEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccc-------cccceeeEe
Q 016849 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (381)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~-------~s~i~l~~~ 72 (381)
|.+|++...+| |+.+++++++||.+||++|++++|||+++|+|+|+|++|+|++||++|+|.+ ++++||+++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 89999998888 8889999999999999999999999999999999999999999999999999 999999998
Q ss_pred ecC
Q 016849 73 LRG 75 (381)
Q Consensus 73 ~~~ 75 (381)
..+
T Consensus 81 ~~~ 83 (118)
T 4ajy_B 81 ADD 83 (118)
T ss_dssp CSS
T ss_pred cCC
Confidence 643
No 35
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.77 E-value=6e-19 Score=130.51 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=72.7
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++++|++++++|.+++||.+||++|++++|+|+++|+|+|+|+.|+|+.||++|+|.+++++|++++.+|
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999988765
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.77 E-value=1.3e-18 Score=132.65 Aligned_cols=79 Identities=27% Similarity=0.411 Sum_probs=75.5
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCC-CcccccCCCCCCEEEEEEecCCC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
...|+|+|+...| ++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+|++|++||
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 4579999999888 899999999999999999999999999999999999999999 99999999999999999999998
Q ss_pred C
Q 016849 381 F 381 (381)
Q Consensus 381 ~ 381 (381)
.
T Consensus 92 ~ 92 (94)
T 2kan_A 92 A 92 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.77 E-value=1.2e-18 Score=134.35 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=75.0
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCCeEEE
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~~~i~ 80 (381)
|+|+|++++|+++.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++..+.+++.+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEE
Q 016849 81 VKTLTGKTITL 91 (381)
Q Consensus 81 v~~~~g~~~~l 91 (381)
.++.+|+.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 99988765443
No 38
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.76 E-value=6.9e-19 Score=137.58 Aligned_cols=73 Identities=29% Similarity=0.439 Sum_probs=69.7
Q ss_pred CEEEEEcCCCc-EEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCcccccccc-------ccccceeeEe
Q 016849 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (381)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~-------~~s~i~l~~~ 72 (381)
|+|||+...|+ +++++|++++||.+||++|++++|||+++|+|+|+|++|+|++||++|+|. ++||+||+++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 89999999887 599999999999999999999999999999999999999999999999999 7999999988
Q ss_pred e
Q 016849 73 L 73 (381)
Q Consensus 73 ~ 73 (381)
.
T Consensus 81 ~ 81 (118)
T 2fnj_B 81 A 81 (118)
T ss_dssp S
T ss_pred C
Confidence 3
No 39
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.76 E-value=1e-18 Score=134.35 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.2
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++|++++++|.+++||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+|.++++||++++++|+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999887653
No 40
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.76 E-value=2.9e-18 Score=130.37 Aligned_cols=77 Identities=91% Similarity=1.263 Sum_probs=74.3
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 378 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 378 (381)
...|+|+|++.+|+++.++|++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|++|+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999986
No 41
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.8e-19 Score=142.54 Aligned_cols=103 Identities=74% Similarity=0.991 Sum_probs=96.6
Q ss_pred cCCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEeeecce
Q 016849 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (381)
Q Consensus 74 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~~~~~ 153 (381)
.+..+|+|++++|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|++++++++
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEE---eccCcEEEEEecCCchHH
Q 016849 154 QIFVK---TLTGKTITLEVESSDTID 176 (381)
Q Consensus 154 ~v~v~---~~~g~~~~i~v~~~~tV~ 176 (381)
.++++ ...|+++++++.+++||.
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~ 112 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSG 112 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGG
T ss_pred eeeccccccccCceEEEEeccccccC
Confidence 99887 456888899999888875
No 42
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.75 E-value=2.6e-18 Score=130.38 Aligned_cols=74 Identities=34% Similarity=0.585 Sum_probs=71.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++++|++++++|.+++||.+||++|++++|+|+++|+|+|.|+.|+|+.+|++|+| +++++|++++.+.
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999 8999999997654
No 43
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.75 E-value=4.3e-18 Score=129.16 Aligned_cols=77 Identities=32% Similarity=0.560 Sum_probs=73.6
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
..|+|+|+..+|+++.++|++++||.+||++|++++|+|++.|+|+|+|+.|+|+.+|++||| +|++|+|++|..++
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999 89999999998775
No 44
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=129.05 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=71.7
Q ss_pred ccccccceeeEeecCCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccC
Q 016849 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 140 (381)
Q Consensus 61 i~~~s~i~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~ 140 (381)
..+++.+++..+.+..|+|+|++.+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +|
T Consensus 2 ~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g 80 (88)
T 4eew_A 2 MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GG 80 (88)
T ss_dssp -------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TT
T ss_pred CCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CC
Confidence 45678888888888899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CceeEEEe
Q 016849 141 STLHLVLR 148 (381)
Q Consensus 141 ~~i~l~~~ 148 (381)
++|||+.|
T Consensus 81 ~~i~lv~R 88 (88)
T 4eew_A 81 KVIHLVER 88 (88)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEC
Confidence 99999864
No 45
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.75 E-value=4.3e-18 Score=124.82 Aligned_cols=75 Identities=56% Similarity=0.935 Sum_probs=72.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++++|+++++++.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+.++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988765
No 46
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.75 E-value=5.3e-18 Score=130.75 Aligned_cols=77 Identities=95% Similarity=1.291 Sum_probs=74.6
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
|+|+|+..+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..+++||.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999984
No 47
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.75 E-value=2.7e-18 Score=129.77 Aligned_cols=76 Identities=58% Similarity=0.975 Sum_probs=73.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999887653
No 48
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.75 E-value=2.8e-18 Score=135.73 Aligned_cols=76 Identities=26% Similarity=0.458 Sum_probs=70.8
Q ss_pred CEEEEEcCCCcEE-EEEeecCccHHHHHHHH-----hhhcCCCC--ccceEEecCeeccCCCcccccccccc------cc
Q 016849 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (381)
Q Consensus 1 ~~i~~~~~~g~~~-~~~v~~~dtv~~~K~~i-----~~~~~ip~--~~q~l~~~g~~L~d~~tl~~~~i~~~------s~ 66 (381)
|+|+|++++|+.+ +++++|+|||.+||++| ++++|+|+ ++|+|+|+|++|+|++||++|+|..+ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999999 79999999999999999 78899997 89999999999999999999999988 68
Q ss_pred ceeeEeecCC
Q 016849 67 LHLVLRLRGG 76 (381)
Q Consensus 67 i~l~~~~~~~ 76 (381)
+||+++++++
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 9999987654
No 49
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=3.1e-18 Score=126.34 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.5
Q ss_pred CEEEEEcCCCcEE-EEE-eecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEee
Q 016849 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (381)
Q Consensus 1 ~~i~~~~~~g~~~-~~~-v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~ 73 (381)
|+|+|++++|+++ +++ |.+++||.++|++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999996 999 999999999999999999999999999999999999999999999999999998875
No 50
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=4.1e-18 Score=127.12 Aligned_cols=75 Identities=32% Similarity=0.456 Sum_probs=72.1
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEE-cCCCCcccccCCCCCCEEEEEEec
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 377 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~-L~d~~~L~~~~i~~~~~i~l~~~~ 377 (381)
..|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|||++|++|+|++|.
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 459999999999999999999999999999999999999999999999999 999999999999999999998863
No 51
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=4.5e-18 Score=128.30 Aligned_cols=76 Identities=87% Similarity=1.271 Sum_probs=70.1
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++|+++.++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887654
No 52
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.74 E-value=4.1e-18 Score=129.49 Aligned_cols=74 Identities=92% Similarity=1.261 Sum_probs=71.6
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeec
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~ 74 (381)
|+|+|++++|+++.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999988753
No 53
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=129.72 Aligned_cols=76 Identities=37% Similarity=0.616 Sum_probs=70.6
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++|++++++|.+++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+++++
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999998876543
No 54
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.6e-18 Score=130.51 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=73.4
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++|+++.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987653
No 55
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.74 E-value=8.5e-18 Score=142.19 Aligned_cols=77 Identities=96% Similarity=1.293 Sum_probs=74.2
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999995
No 56
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.1e-17 Score=123.37 Aligned_cols=74 Identities=35% Similarity=0.636 Sum_probs=71.4
Q ss_pred CeeeEEEeeCCcEE-EEE-eeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEec
Q 016849 304 GMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 377 (381)
Q Consensus 304 ~m~I~v~~~~g~~~-~~~-v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 377 (381)
.|+|+|+..+|+++ .++ |++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|+
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 69999999999985 999 999999999999999999999999999999999999999999999999999999986
No 57
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.73 E-value=6.4e-18 Score=132.12 Aligned_cols=75 Identities=28% Similarity=0.431 Sum_probs=69.0
Q ss_pred eeeEEEeeCCc-EEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCC-------CCCEEEEEEe
Q 016849 305 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 376 (381)
Q Consensus 305 m~I~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~-------~~~~i~l~~~ 376 (381)
|+||++...|+ ++.++|.+++||++||++|+++.|||+++|+|+|+|+.|+|+++|++|||+ ++|||+|++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 56777766665 589999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cCCC
Q 016849 377 LRGG 380 (381)
Q Consensus 377 ~~GG 380 (381)
.||
T Consensus 81 -~~g 83 (118)
T 2fnj_B 81 -ADD 83 (118)
T ss_dssp -SSS
T ss_pred -CCC
Confidence 555
No 58
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=7.2e-18 Score=132.32 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=68.5
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhh------hcCC--CCccceEEecCeeccCCCcccccccccc--ccceee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~------~~~i--p~~~q~l~~~g~~L~d~~tl~~~~i~~~--s~i~l~ 70 (381)
|+|+|++++|++++++|++++||.+||++|++ ++|+ |+++|+|+|+|++|+|++||++|+|..+ +++||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 7786 6999999999999999999999999755 689998
Q ss_pred Eeec
Q 016849 71 LRLR 74 (381)
Q Consensus 71 ~~~~ 74 (381)
+++.
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 8754
No 59
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=7.3e-18 Score=126.44 Aligned_cols=76 Identities=80% Similarity=1.167 Sum_probs=72.4
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987653
No 60
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=7.9e-18 Score=128.34 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=71.8
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCC-CccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~-~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++| +++++|.+++||.+||++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.++++++|+++++++
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 7899999988 999999999999999999999999999999999999999999 99999999999999999987654
No 61
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.73 E-value=1.2e-17 Score=128.38 Aligned_cols=79 Identities=91% Similarity=1.240 Sum_probs=73.7
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCCeEE
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~~~i 79 (381)
|+|+|++++|+++.++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998877653
No 62
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=7e-18 Score=128.23 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=69.7
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
.|+|+|+++.|+++.++|.|++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 389999999999999999999999999999999999999999999999999999999999999999999874
No 63
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.72 E-value=8.9e-18 Score=128.31 Aligned_cols=72 Identities=22% Similarity=0.444 Sum_probs=67.9
Q ss_pred CEEEEEcCCCcEEEEE--eecCccHHHHHHHH-hhhcCCCCccceEEecCeeccCCCccccccc-cccccceeeEe
Q 016849 1 MQIFVKTLTGKTITLE--VESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~--v~~~dtv~~~K~~i-~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i-~~~s~i~l~~~ 72 (381)
|+|+|++++|++|+++ |.+++||.+||++| ++++|+|+++|+|+|+|+.|+|+.+|++|+| .+++++++.++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 7999999999988875 55999999999999 9999999999999999999999999999999 99999999875
No 64
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.57 E-value=3.1e-19 Score=131.07 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=73.5
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 379 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~G 379 (381)
|+|+|+..+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999998
No 65
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.72 E-value=1.5e-17 Score=129.31 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=70.7
Q ss_pred eeeEEEeeCCc-EEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCC-------CCEEEEEEe
Q 016849 305 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 376 (381)
Q Consensus 305 m~I~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~-------~~~i~l~~~ 376 (381)
|.+|++...++ ++.+++.+++||.+||++|+++.|+|+++|+|+|+|+.|+|++||++|||++ +++|+|++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 56788776666 7888999999999999999999999999999999999999999999999999 999999999
Q ss_pred cCCCC
Q 016849 377 LRGGF 381 (381)
Q Consensus 377 ~~GG~ 381 (381)
..|+|
T Consensus 81 ~~~~f 85 (118)
T 4ajy_B 81 ADDTF 85 (118)
T ss_dssp CSSCC
T ss_pred cCCCc
Confidence 85543
No 66
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.72 E-value=7.9e-18 Score=132.71 Aligned_cols=79 Identities=33% Similarity=0.468 Sum_probs=76.1
Q ss_pred ecCeeeEEEee---CCcEEEEEeeC-cchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEec
Q 016849 302 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 377 (381)
Q Consensus 302 ~~~m~I~v~~~---~g~~~~~~v~~-~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 377 (381)
..+|+|+|+.+ +|+++.++|++ ++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|++|+
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 46789999998 89999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 016849 378 RGG 380 (381)
Q Consensus 378 ~GG 380 (381)
+||
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 998
No 67
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1e-17 Score=126.29 Aligned_cols=76 Identities=34% Similarity=0.532 Sum_probs=73.4
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987664
No 68
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.72 E-value=1.7e-17 Score=121.59 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.2
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++|+++.+++.+++||.++|++|+++.|+|++.|+|+|.|+.|+|+.+|++|+|.+++++++.++++++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887653
No 69
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.1e-17 Score=127.61 Aligned_cols=78 Identities=29% Similarity=0.500 Sum_probs=73.5
Q ss_pred cCeeeEEEeeCCc--EEEEEeeCcchHHHHHHHHHhHh--CCCCCCeEEEECCEEcCCCCccccc--CCCCCCEEEEEEe
Q 016849 303 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 376 (381)
Q Consensus 303 ~~m~I~v~~~~g~--~~~~~v~~~~tV~~lK~~i~~~~--gi~~~~q~L~~~g~~L~d~~~L~~~--~i~~~~~i~l~~~ 376 (381)
..|+|+|+..+|+ .+.+++++++||.+||++|++.+ |+|+++|+|+|+|+.|+|+.+|++| +|+++++|||+++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 4589999999988 67777779999999999999999 9999999999999999999999999 9999999999999
Q ss_pred cCCC
Q 016849 377 LRGG 380 (381)
Q Consensus 377 ~~GG 380 (381)
++||
T Consensus 86 ~~gg 89 (93)
T 1wgd_A 86 VKSG 89 (93)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9998
No 70
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=3.2e-18 Score=131.85 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=70.8
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCc---------------cceEEecCeecc-CCCcccccccccc
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~---------------~q~l~~~g~~L~-d~~tl~~~~i~~~ 64 (381)
|+|+|++++|++++++|.+++||.+||++|++++|+|+. +|+|+|+|+.|. |+.||++|+|.++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 899999999999999999999999999999999999984 569999999996 6699999999999
Q ss_pred ccceeeEeecCC
Q 016849 65 STLHLVLRLRGG 76 (381)
Q Consensus 65 s~i~l~~~~~~~ 76 (381)
+++||++++++.
T Consensus 88 ~~l~lv~~lr~~ 99 (105)
T 1v2y_A 88 DEVSFIKKLGQK 99 (105)
T ss_dssp EEEEEEECSCSC
T ss_pred CEEEEEehhccC
Confidence 999999987653
No 71
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.72 E-value=1.3e-17 Score=141.07 Aligned_cols=99 Identities=77% Similarity=1.030 Sum_probs=83.8
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCCeEEE
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~~~i~ 80 (381)
|+|+|++++|++++++|.+++||.++|++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++..-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988766555
Q ss_pred EEccC-C--cEEEEEEeCCCCH
Q 016849 81 VKTLT-G--KTITLEVESSDTI 99 (381)
Q Consensus 81 v~~~~-g--~~~~l~v~~~~tV 99 (381)
|+... | ..-.+.+.++.++
T Consensus 81 vkfs~~Gd~g~~~i~l~~~~~~ 102 (169)
T 3l0w_B 81 IKFVADGDIGSGSVIIKPFVDM 102 (169)
T ss_dssp EEEEEECSSCEEEEEECCBCCS
T ss_pred ccccccCcccceeEEEecCCCC
Confidence 55332 2 2345566655544
No 72
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.72 E-value=1.5e-17 Score=142.02 Aligned_cols=80 Identities=91% Similarity=1.215 Sum_probs=77.7
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
...|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|++|++||.
T Consensus 103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 56699999999999999999999999999999999999999999999999999999999999999999999999999995
No 73
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.8e-17 Score=124.30 Aligned_cols=76 Identities=92% Similarity=1.254 Sum_probs=73.2
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++|+++++++.+++||.+||++|+++.|+|+++|+|+|.|+.|+|+.+|++|+|.++++++++++++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999887653
No 74
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.2e-17 Score=125.46 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=63.7
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++| ++++++|.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 7789999999999999999999999999999999999999999999999999999999 88898884
No 75
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1e-17 Score=130.75 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeec
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~ 74 (381)
|+|+|++++|++++++|.+++||.+||++|++++|+|+++|+|+|.|+.|+|+.+|++|+|.++++++++++.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988643
No 76
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.71 E-value=6.5e-18 Score=144.27 Aligned_cols=82 Identities=91% Similarity=1.230 Sum_probs=79.0
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCCeEEE
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~~~i~ 80 (381)
|+|+|++++|++++++|.+++||.+||++|++++|+|+++|+|+|.|+.|+|+.+|++|+|.+++++||+++++++..++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred EE
Q 016849 81 VK 82 (381)
Q Consensus 81 v~ 82 (381)
||
T Consensus 186 vk 187 (189)
T 3q3f_A 186 TK 187 (189)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 77
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=126.63 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=71.1
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++ |++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999 8999999999999999999999999999999999999999999999999999999999999987653
No 78
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2e-17 Score=125.15 Aligned_cols=76 Identities=37% Similarity=0.627 Sum_probs=72.5
Q ss_pred CEEEEEcCCC-cEEEE-EeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g-~~~~~-~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++| +++++ +|.+++||.+||++|++++|+|+++|+|+|.|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 7999999999 79999 5999999999999999999999999999999999999999999999999999999987654
No 79
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=121.99 Aligned_cols=76 Identities=39% Similarity=0.684 Sum_probs=72.9
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 378 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 378 (381)
..|+|+|+..+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|++
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999998864
No 80
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.55 E-value=6.6e-19 Score=129.27 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=72.8
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++++|+++++++.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988764
No 81
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.70 E-value=2.6e-17 Score=129.52 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.0
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++|+++.++|.+++||.+||++|+++.|+|+++|+|+|.|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987653
No 82
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=131.76 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=69.1
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhh------hcCCC--CccceEEecCeeccCCCccccccccccc--cceee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~------~~~ip--~~~q~l~~~g~~L~d~~tl~~~~i~~~s--~i~l~ 70 (381)
|+|+|++++|++++++|++++||.+||++|++ ++|+| +++|+|+|+|++|+|+.||++|+|..++ ++||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 88985 8999999999999999999999999665 78988
Q ss_pred EeecC
Q 016849 71 LRLRG 75 (381)
Q Consensus 71 ~~~~~ 75 (381)
+++++
T Consensus 98 ~r~~~ 102 (125)
T 2gow_A 98 ARETL 102 (125)
T ss_dssp ECSCC
T ss_pred ecCCC
Confidence 87653
No 83
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=2.4e-17 Score=125.28 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=64.8
Q ss_pred EEEEcCC----CcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 3 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 3 i~~~~~~----g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|.|+..+ |++++++|++++||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+|.++++| +++++++
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 4455666 8899999999999999999999999999999999999999999999999999999999 5555443
No 84
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4.4e-17 Score=124.73 Aligned_cols=73 Identities=30% Similarity=0.597 Sum_probs=70.5
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhh---cCCCCccceEEecCeeccCCCccccccccccccceeeEee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~---~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~ 73 (381)
|+|+|++++|++++++|.+++||.+||++|+++ +|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 899999999999999999999999999999999 8999999999999999999999999999999999998753
No 85
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.9e-17 Score=123.73 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=69.2
Q ss_pred eeeEEEeeCCcEEEEEee--CcchHHHHHHHH-HhHhCCCCCCeEEEECCEEcCCCCcccccCC-CCCCEEEEEEec
Q 016849 305 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 377 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~--~~~tV~~lK~~i-~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~~ 377 (381)
|+|+|+++.|++++++|+ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+|..+.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999999866 999999999999 9999999999999999999999999999999 699999998763
No 86
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.9e-17 Score=125.98 Aligned_cols=78 Identities=33% Similarity=0.432 Sum_probs=74.2
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
...|+|+|+..+|+ +.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|+.|++||
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 45589999999886 7999999999999999999999999999999999999999999999999999999999999987
No 87
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.70 E-value=4.2e-17 Score=122.30 Aligned_cols=73 Identities=30% Similarity=0.540 Sum_probs=69.9
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhh---cCCCCccceEEecCeeccCCCccccccccccccceeeEee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~---~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~ 73 (381)
|+|+|++++|++++++|.+++||.+||++|+++ +|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+..+.
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 799999999999999999999999999999998 8999999999999999999999999999999999998754
No 88
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.5e-17 Score=120.45 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.7
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~ 73 (381)
|+|+|++.+|++++++|.+++||.+||++|+++.|+|++.|+|+|.|+.|+|+.+|++|+|.+++++|+.+++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998764
No 89
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.69 E-value=4.6e-17 Score=124.70 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=68.7
Q ss_pred CEEEEEcCCC--cEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccc-cccccceeeEee
Q 016849 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (381)
Q Consensus 1 ~~i~~~~~~g--~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i-~~~s~i~l~~~~ 73 (381)
|+|+|++..+ .+++++|+|++||.+||++|++++|||+++||++|.|+.++|++||++|+| ++++++||++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999875 799999999999999999999999999999999999999999999999999 599999998853
No 90
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.1e-16 Score=122.38 Aligned_cols=75 Identities=29% Similarity=0.573 Sum_probs=71.4
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhH---hCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 379 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~---~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~G 379 (381)
|+|+|+..+|+.+.++|++++||++||++|++. +|+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.+...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999 799999999999999999999999999999999999987543
No 91
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=2.2e-17 Score=126.76 Aligned_cols=77 Identities=27% Similarity=0.340 Sum_probs=74.3
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
..|+|+|+.. |+++.++|++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|+.|++||
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 4589999988 9999999999999999999999999999999999999999999999999999999999999999998
No 92
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.69 E-value=1.2e-16 Score=119.81 Aligned_cols=75 Identities=29% Similarity=0.512 Sum_probs=71.3
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhH---hCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEec
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 377 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~---~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 377 (381)
..|+|+|+..+|+++.++|++++||++||++|++. +|+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.+.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 56999999999999999999999999999999998 8999999999999999999999999999999999998764
No 93
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=4.3e-17 Score=124.30 Aligned_cols=76 Identities=29% Similarity=0.482 Sum_probs=71.2
Q ss_pred CEEEEEcCCCc--EEEEEeecCccHHHHHHHHhhhc--CCCCccceEEecCeeccCCCccccc--cccccccceeeEeec
Q 016849 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (381)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~~K~~i~~~~--~ip~~~q~l~~~g~~L~d~~tl~~~--~i~~~s~i~l~~~~~ 74 (381)
|+|+|++++|+ ++++++.+++||.+||++|++++ |+|+++|+|+|.|+.|+|+.+|++| +|.+++++||+++++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 79999999999 77788889999999999999998 9999999999999999999999999 999999999998766
Q ss_pred CC
Q 016849 75 GG 76 (381)
Q Consensus 75 ~~ 76 (381)
++
T Consensus 88 gg 89 (93)
T 1wgd_A 88 SG 89 (93)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 94
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.69 E-value=8.1e-17 Score=127.66 Aligned_cols=69 Identities=29% Similarity=0.593 Sum_probs=67.0
Q ss_pred CCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 313 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
+|+++.++|++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|++|++||.
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk 112 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGP 112 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 588999999999999999999999999999999999999999999999999999999999999999994
No 95
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.3e-17 Score=128.88 Aligned_cols=92 Identities=32% Similarity=0.529 Sum_probs=67.7
Q ss_pred ccccccccccCceeeEEEEeecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCccc
Q 016849 282 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361 (381)
Q Consensus 282 ~tl~~y~i~~~~tl~l~~~~~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~ 361 (381)
...++|.|. +|.++.+...-.|.|+|+. +|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|+
T Consensus 8 ~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (101)
T 3m63_B 8 HPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE 84 (101)
T ss_dssp -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred CCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence 456788775 6777776666567788887 8999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEEEEe
Q 016849 362 DYNIQKESTLHLVLR 376 (381)
Q Consensus 362 ~~~i~~~~~i~l~~~ 376 (381)
+|||++|++|+|+.+
T Consensus 85 ~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 85 SYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTCCTTEEEEECCC
T ss_pred HCCCCCCCEEEEEeC
Confidence 999999999999865
No 96
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=1.9e-17 Score=127.59 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=73.1
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCC---------------CCeEEEECCEEcC-CCCcccccCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQ 366 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~---------------~~q~L~~~g~~L~-d~~~L~~~~i~ 366 (381)
..|+|+|++.+|+++.++|.+++||++||++|+++.++|+ ++|+|+|+|+.|. |+++|++|||+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 3599999999999999999999999999999999999988 4679999999996 67899999999
Q ss_pred CCCEEEEEEecCCC
Q 016849 367 KESTLHLVLRLRGG 380 (381)
Q Consensus 367 ~~~~i~l~~~~~GG 380 (381)
+|++|+++.|++|.
T Consensus 86 ~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 86 NRDEVSFIKKLGQK 99 (105)
T ss_dssp SSEEEEEEECSCSC
T ss_pred CCCEEEEEehhccC
Confidence 99999999999985
No 97
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.69 E-value=2.1e-18 Score=139.46 Aligned_cols=77 Identities=96% Similarity=1.320 Sum_probs=0.4
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
|+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|++|++||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999994
No 98
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.4e-16 Score=127.68 Aligned_cols=78 Identities=29% Similarity=0.350 Sum_probs=70.7
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
..|+|+|+.. |+++.++|++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|+.+++||.
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 4589999988 99999999999999999999999999999999999999999999999999999999999999999983
No 99
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.6e-17 Score=126.15 Aligned_cols=73 Identities=22% Similarity=0.431 Sum_probs=70.2
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEec
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 377 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 377 (381)
|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999874
No 100
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.68 E-value=9.4e-17 Score=126.98 Aligned_cols=79 Identities=25% Similarity=0.440 Sum_probs=73.1
Q ss_pred ecCeeeEEEeeCCcEE-EEEeeCcchHHHHHHHH-----HhHhCCCC--CCeEEEECCEEcCCCCcccccCCCCC-----
Q 016849 302 RGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE----- 368 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~-~~~v~~~~tV~~lK~~i-----~~~~gi~~--~~q~L~~~g~~L~d~~~L~~~~i~~~----- 368 (381)
...|+|++++.+|+.+ .+++++++||++||++| +++.|+|+ ++|+|+|+|+.|+|+.||++|+|+.|
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 4578999999999888 79999999999999999 56678997 89999999999999999999999998
Q ss_pred -CEEEEEEecCCC
Q 016849 369 -STLHLVLRLRGG 380 (381)
Q Consensus 369 -~~i~l~~~~~GG 380 (381)
++++|++|++||
T Consensus 94 v~tmhlVlrl~g~ 106 (126)
T 1se9_A 94 VTTMHVIIQAPVT 106 (126)
T ss_dssp CEEEEEEECCCSS
T ss_pred cEEEEEEeccCCc
Confidence 789999999987
No 101
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.68 E-value=3e-18 Score=141.58 Aligned_cols=77 Identities=96% Similarity=1.293 Sum_probs=0.0
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999994
No 102
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.68 E-value=1.1e-16 Score=117.57 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=68.6
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEe
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
|+|+|++ +|+++++++.+++||.+||++|+++.|+|++.|+|+|.|+.|+|+.+|++|+|.+++++|++.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 7899999 9999999999999999999999999999999999999999999999999999999999999765
No 103
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.68 E-value=5e-17 Score=124.47 Aligned_cols=70 Identities=24% Similarity=0.382 Sum_probs=65.3
Q ss_pred CEEEEEcCCCc--EEEEEeecCccHHHHHHHHhhh-cCCCC-ccceEEecCeeccCCCccccc--cccccccceee
Q 016849 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIPP-DQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (381)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~~K~~i~~~-~~ip~-~~q~l~~~g~~L~d~~tl~~~--~i~~~s~i~l~ 70 (381)
|+|+|++++|+ +++++|.+++||.+||++|+++ +|+|+ ++|+|+|+|++|+|+.||++| +|.+++++||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999999 7899999999999999999986 67765 999999999999999999999 99999999984
No 104
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.67 E-value=2.2e-16 Score=115.91 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=69.1
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEec
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 377 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 377 (381)
|+|+|+. +|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 8899998 99999999999999999999999999999999999999999999999999999999999998753
No 105
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=7.9e-17 Score=125.79 Aligned_cols=74 Identities=28% Similarity=0.525 Sum_probs=71.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeec
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~ 74 (381)
|+|+|++++|+++.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++.+.+
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988643
No 106
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.6e-16 Score=124.02 Aligned_cols=79 Identities=27% Similarity=0.449 Sum_probs=74.7
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
...|+|+|+..+|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|+.+...+
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999986543
No 107
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.67 E-value=1.8e-16 Score=121.00 Aligned_cols=75 Identities=20% Similarity=0.428 Sum_probs=69.2
Q ss_pred ecCeeeEEEeeCCcEEEE--EeeCcchHHHHHHHH-HhHhCCCCCCeEEEECCEEcCCCCcccccCC-CCCCEEEEEEe
Q 016849 302 RGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 376 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~--~v~~~~tV~~lK~~i-~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~ 376 (381)
...|+|+|++.+|+++++ +|++++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|++.++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 467999999999998777 555999999999999 8889999999999999999999999999999 99999999875
No 108
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.3e-17 Score=127.41 Aligned_cols=92 Identities=32% Similarity=0.529 Sum_probs=68.2
Q ss_pred CccccccccccccceeeEeecCCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCccc
Q 016849 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133 (381)
Q Consensus 54 ~tl~~~~i~~~s~i~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~ 133 (381)
..++||.|. +|.++.+.....|.|+|++ +|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|+
T Consensus 8 ~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (101)
T 3m63_B 8 HPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE 84 (101)
T ss_dssp -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred CCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence 567888875 5666666666778899997 8999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceeEEEe
Q 016849 134 DYNIQKESTLHLVLR 148 (381)
Q Consensus 134 ~~~i~~~~~i~l~~~ 148 (381)
+|+|.+|++|+|+.+
T Consensus 85 ~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 85 SYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTCCTTEEEEECCC
T ss_pred HCCCCCCCEEEEEeC
Confidence 999999999999864
No 109
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.9e-16 Score=123.72 Aligned_cols=77 Identities=34% Similarity=0.442 Sum_probs=73.4
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
..|+|+|+..+|+ +.++|++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|+.|++||
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 3489999998886 7999999999999999999999999999999999999999999999999999999999999987
No 110
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=1.2e-16 Score=123.94 Aligned_cols=77 Identities=21% Similarity=0.400 Sum_probs=72.6
Q ss_pred CeeeEEEeeCC----cEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCC-CcccccCCCCCCEEEEEEecC
Q 016849 304 GMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 378 (381)
Q Consensus 304 ~m~I~v~~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~~~ 378 (381)
.|+|+|+..+| +++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+|..+.+
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 48999998754 7999999999999999999999999999999999999999987 699999999999999999999
Q ss_pred CC
Q 016849 379 GG 380 (381)
Q Consensus 379 GG 380 (381)
||
T Consensus 87 gg 88 (102)
T 1v5o_A 87 VG 88 (102)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 111
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.5e-16 Score=122.64 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=70.5
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++.+|+ ++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+.++
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 78999999997 799999999999999999999999999999999999999999999999999999999887654
No 112
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=4.4e-16 Score=120.35 Aligned_cols=79 Identities=30% Similarity=0.378 Sum_probs=73.8
Q ss_pred eecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 301 ~~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
....|+|+|+.. |+.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|+.++++.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~~ 100 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR 100 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSSC
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 346699999988 8999999999999999999999999999999999999999999999999999999999999988753
No 113
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=1.3e-16 Score=122.37 Aligned_cols=74 Identities=27% Similarity=0.349 Sum_probs=71.2
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++. |+++.++|.+++||.+||++|++++|+|+++|+|+|.|+.|+|+.+|++|+|.+++++|+++++++
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCC
Confidence 78999999 999999999999999999999999999999999999999999999999999999999999987654
No 114
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=3.5e-16 Score=122.69 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=70.8
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHh------HhCC--CCCCeEEEECCEEcCCCCcccccCCCCC--CEE
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STL 371 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~------~~gi--~~~~q~L~~~g~~L~d~~~L~~~~i~~~--~~i 371 (381)
...|+|+|++.+|++++++|++++||++||++|++ +.++ |+++|+|+|.|+.|+|+.+|++|+|+.+ ++|
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 34589999999999999999999999999999999 5675 6999999999999999999999999866 678
Q ss_pred EEEEecCC
Q 016849 372 HLVLRLRG 379 (381)
Q Consensus 372 ~l~~~~~G 379 (381)
||++|+.+
T Consensus 94 hLvlr~~~ 101 (116)
T 1wgh_A 94 HLVARETL 101 (116)
T ss_dssp EEEECSSC
T ss_pred EEEccCCC
Confidence 99988765
No 115
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.65 E-value=1.6e-16 Score=125.16 Aligned_cols=76 Identities=33% Similarity=0.468 Sum_probs=72.6
Q ss_pred CEEEEEcC---CCcEEEEEeec-CccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~---~g~~~~~~v~~-~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|+++ +|++++++|.+ ++||.+||++|++++|+|+++|+|+|.|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 68999999 89999999998 999999999999999999999999999999999999999999999999999887654
No 116
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.65 E-value=1.1e-17 Score=135.36 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++|++++++|.+++||.+||++|++.+|+|+++|+|+|.|+.|+|+.||++|+|.++++++++++++++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887664
No 117
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=122.80 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=72.7
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++++|+++.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++++
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999988765
No 118
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.64 E-value=1.2e-17 Score=137.92 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++||++++++++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987654
No 119
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.63 E-value=4.8e-16 Score=123.72 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=71.9
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHh------HhCCC--CCCeEEEECCEEcCCCCcccccCCCCCC--EEE
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLH 372 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~------~~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~--~i~ 372 (381)
..|.|++++.+|++++++|++++||++||++|++ +.|+| +++|+|+|.|+.|+|+.+|++|+|+.|+ +++
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 3488999999999999999999999999999999 77884 8999999999999999999999999776 799
Q ss_pred EEEecCCC
Q 016849 373 LVLRLRGG 380 (381)
Q Consensus 373 l~~~~~GG 380 (381)
|++|++||
T Consensus 96 lv~r~~~~ 103 (125)
T 2gow_A 96 LVARETLP 103 (125)
T ss_dssp EEECSCCS
T ss_pred EEecCCCC
Confidence 99999875
No 120
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.63 E-value=6.8e-16 Score=119.26 Aligned_cols=73 Identities=33% Similarity=0.450 Sum_probs=70.0
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeec
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~ 74 (381)
|+|+|++. |++++++|.+++||.+||++|+++.|+|+++|+|+|.|+.|+|+.+|++|+|.++++++++.+++
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999999 89999999999999999999999999999999999999999999999999999999999988654
No 121
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=6.2e-16 Score=123.96 Aligned_cols=74 Identities=31% Similarity=0.405 Sum_probs=69.4
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++. |++++++|.+++||.+||++|+++.|+|+++|+|+|.|+.|+|+.+|++|+|.++++|+++.+..+
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence 78999999 999999999999999999999999999999999999999999999999999999999999887654
No 122
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.63 E-value=1.4e-15 Score=116.41 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=68.1
Q ss_pred CeeeEEEeeCC--cEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCC-CCCCEEEEEEe
Q 016849 304 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 376 (381)
Q Consensus 304 ~m~I~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~ 376 (381)
.|+|+|++..+ .+++++|.|++||++||++|++++|+|++.|||+|+|+.++|+.||++||| ++|++++|++-
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 48899998774 789999999999999999999999999999999999999999999999999 59999999874
No 123
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=5.3e-16 Score=120.22 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=69.7
Q ss_pred CEEEEEcCCC----cEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCC-CccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g----~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~-~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++.+| ++++++|.+++||.+||++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.+++++|+..+.++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7899999755 7999999999999999999999999999999999999999987 6999999999999999886554
No 124
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.62 E-value=2.9e-17 Score=139.06 Aligned_cols=71 Identities=30% Similarity=0.415 Sum_probs=0.0
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|||++++|++++|+|++++||.+||++|++++|||+++|+|+|+|++|+|+.||+ ++|||||+++++++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 899999999999999999999999999999999999999999999999999999998 89999999988765
No 125
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=9.7e-16 Score=119.67 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=70.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|+|++.+|+ +.++|.+++||.+||++|++++|+|+++|+|+|.|+.|+|+.+|++|+|.++++||++.+.++
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999999997 799999999999999999999999999999999999999999999999999999999887654
No 126
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=6.3e-16 Score=118.16 Aligned_cols=71 Identities=20% Similarity=0.321 Sum_probs=67.2
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEe--cCeeccCCCccccccccccccceeeEe
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~--~g~~L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
|++|+++.+|++++++|.+++||.+||++|++++|||+++|+|+| .|+ |+|+.+|++|+|..++++|+++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 788999999999999999999999999999999999999999997 566 99999999999999999999875
No 127
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=2.5e-15 Score=113.94 Aligned_cols=79 Identities=16% Similarity=0.383 Sum_probs=76.5
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
..|+|+|++.+|+.+.++|.+++++..||++++++.|+|+++++|+|+|+.|+++.|+++|++++|++|+++++++||+
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999999996
No 128
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=6.2e-16 Score=116.03 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=64.7
Q ss_pred CEEEEEcCCCcEE--EE-EeecCccHHHHHHHHhh-hcCCCCccceEEec--CeeccCCCcccccccccccccee
Q 016849 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (381)
Q Consensus 1 ~~i~~~~~~g~~~--~~-~v~~~dtv~~~K~~i~~-~~~ip~~~q~l~~~--g~~L~d~~tl~~~~i~~~s~i~l 69 (381)
|+|+|++++|+.+ ++ +|+|++||.+||++|++ ++|+|+++|+|+|. |+.|+|+.||++|+|.+++++++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 8999999998886 58 99999999999999999 59999999999987 99999999999999999999876
No 129
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=116.65 Aligned_cols=73 Identities=23% Similarity=0.359 Sum_probs=65.5
Q ss_pred ecCeeeEEEeeCCc--EEEEEeeCcchHHHHHHHHHhH-hCCC-CCCeEEEECCEEcCCCCccccc--CCCCCCEEEEE
Q 016849 302 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 374 (381)
Q Consensus 302 ~~~m~I~v~~~~g~--~~~~~v~~~~tV~~lK~~i~~~-~gi~-~~~q~L~~~g~~L~d~~~L~~~--~i~~~~~i~l~ 374 (381)
...|+|+|++++|+ .++++|++++||.+||++|++. .|+| +++|+|+|+|+.|+|+.+|++| +|++|++|+|+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 35699999999998 6789999999999999999996 5666 4999999999999999999999 99999999984
No 130
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.58 E-value=2.6e-15 Score=118.95 Aligned_cols=75 Identities=29% Similarity=0.578 Sum_probs=69.6
Q ss_pred EEEEEcC----------CCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeE
Q 016849 2 QIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (381)
Q Consensus 2 ~i~~~~~----------~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~ 71 (381)
+|.|+.+ +|++++++|.+++||.+||++|++++|+|+++|+|+|.|+.|+|+.+|++|+|.+++++|+++
T Consensus 27 ~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~ 106 (115)
T 1we7_A 27 SIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLAL 106 (115)
T ss_dssp EEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEE
T ss_pred EEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 5667764 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCC
Q 016849 72 RLRGG 76 (381)
Q Consensus 72 ~~~~~ 76 (381)
+++++
T Consensus 107 rl~GG 111 (115)
T 1we7_A 107 KERSG 111 (115)
T ss_dssp CCCSC
T ss_pred EcCCC
Confidence 87764
No 131
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=5.9e-15 Score=110.23 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=65.6
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
++++..+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4566788999999999999999999999999999999999999999999999999999999999998753
No 132
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.58 E-value=1.3e-16 Score=135.10 Aligned_cols=72 Identities=29% Similarity=0.394 Sum_probs=0.4
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
|+|+|++++|++++++|++++||.+||.+|++..|||+++|+|+|+|++|+|+.+|+ ++|||+|++|++||.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 789999999999999999999999999999999999999999999999999999999 899999999999984
No 133
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=3.7e-15 Score=111.35 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=66.6
Q ss_pred EEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEe
Q 016849 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
+++++.+|+++.+++.+++||.+||++|+++.|+|+++|+|+|.|+.|+|+.+|++|+|.++++++++.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 5788899999999999999999999999999999999999999999999999999999999999998654
No 134
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=3.5e-15 Score=114.17 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=67.6
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCC-CccccccccccccceeeEeec
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~-~tl~~~~i~~~s~i~l~~~~~ 74 (381)
|+|+|++.+|+++.++|.+++||.+||++|++++ +++|+|+|.|+.|+|+ .+|++|+|.++++||++.+.+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 7899999999999999999999999999999998 8999999999999999 999999999999999988644
No 135
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.57 E-value=2.9e-15 Score=113.28 Aligned_cols=72 Identities=21% Similarity=0.412 Sum_probs=68.3
Q ss_pred CEEEEEcCCCcEEEE-EeecCccHHHHHHHHhhhcCCCCccceEE---ecCeeccCCCccccccccccccceeeEee
Q 016849 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~-~v~~~dtv~~~K~~i~~~~~ip~~~q~l~---~~g~~L~d~~tl~~~~i~~~s~i~l~~~~ 73 (381)
|+|+|+. +|+++++ ++.+++||.+||++|++++|+|+++|+|+ |.|+.|+|+.+|++|+|.++++++|....
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899996 8999999 99999999999999999999999999999 99999999999999999999999987643
No 136
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=112.51 Aligned_cols=74 Identities=16% Similarity=0.292 Sum_probs=68.6
Q ss_pred cCeeeEEE-eeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 303 GGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 303 ~~m~I~v~-~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
..+.|.|+ ...|+.++++++++.||.+||+.++...++|++.|+|+|+|+.|+|+.||++|||++|.||||+.+
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIF 88 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEe
Confidence 34566666 667889999999999999999999999999999999999999999999999999999999999986
No 137
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.56 E-value=3.9e-15 Score=110.97 Aligned_cols=66 Identities=18% Similarity=0.284 Sum_probs=60.6
Q ss_pred cCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEe-------cCeeccCCCccccccccccccceeeEe
Q 016849 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~-------~g~~L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
..+++.+...+++++||.+||+||+.++|||+++|+|+| .|++|+|+++|++|+|+++++||++-.
T Consensus 11 ~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 11 ASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp TCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 356677889999999999999999999999999999997 589999999999999999999999753
No 138
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=4.6e-15 Score=113.34 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=66.7
Q ss_pred CEEEEEcCCCcEE-EEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEee
Q 016849 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (381)
Q Consensus 1 ~~i~~~~~~g~~~-~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~ 73 (381)
|+|+|+. +|+++ .++|.+++||.+||++|++++|+|+++|+|+|.|+.|+|+ +|++|+|.++++++|....
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 6899995 79999 6999999999999999999999999999999999999999 9999999999999997653
No 139
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=1.7e-14 Score=108.46 Aligned_cols=79 Identities=16% Similarity=0.383 Sum_probs=76.4
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
..|+|.|++.+|+.+.++|.++++++.|+++++++.|+|+++++|+|+|+.|.+++|+++|++++|++|++..+++||+
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 4588999999999999999999999999999999999999999999999999999999999999999999999999996
No 140
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=8.9e-15 Score=111.86 Aligned_cols=74 Identities=27% Similarity=0.410 Sum_probs=69.7
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCC-CcccccCCCCCCEEEEEEecCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 379 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~~~G 379 (381)
..|+|+|+..+|+.+.++|++++||.+||++|++.. +++|+|+|+|+.|+|+ .+|++|||++|++|+|+.+..+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 468999999999999999999999999999999998 9999999999999999 9999999999999999988654
No 141
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.55 E-value=7.1e-15 Score=111.10 Aligned_cols=73 Identities=22% Similarity=0.448 Sum_probs=68.4
Q ss_pred cCeeeEEEeeCCcEEEE-EeeCcchHHHHHHHHHhHhCCCCCCeEEE---ECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 303 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~-~v~~~~tV~~lK~~i~~~~gi~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
..|+|+|+. .|+++.+ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+|+..
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 358899995 8999999 99999999999999999999999999999 9999999999999999999999998753
No 142
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=112.19 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=70.9
Q ss_pred CeEEEEE-ccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEeeecc
Q 016849 76 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (381)
Q Consensus 76 ~~~i~v~-~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~~~~ 152 (381)
.++|.|+ ...++.+.+++.++.||.+||+.++...++|+++|+|+|+||.|.|+.||++|||++|.+|||+.+...+
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 4667776 6678899999999999999999999999999999999999999999999999999999999999876544
No 143
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.55 E-value=8.1e-15 Score=111.36 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=62.0
Q ss_pred EEEEEcCCC--cEEEEEeecCccHHHHHHHHhhhcCCCCccceEEec--Ce---ec-cCCCccccccccccccceee
Q 016849 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 70 (381)
Q Consensus 2 ~i~~~~~~g--~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~--g~---~L-~d~~tl~~~~i~~~s~i~l~ 70 (381)
.|+|+..++ +++++++.+++||.+||+||+.++|||+++|+|+|+ |+ +| +|+++|++|+|.++++||++
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 577887665 489999999999999999999999999999999998 44 55 89999999999999999985
No 144
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4.8e-15 Score=113.24 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=68.3
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE--CCEEcCCCCcccccCCCCCCEEEEEEec
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL 377 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 377 (381)
.|.++++.+.|+++.++|++++||++||++|++++||||++|+|++ .|+ |+|+.+|++|+|++|++|+|+++-
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 5888888899999999999999999999999999999999999986 666 999999999999999999998874
No 145
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=6.2e-15 Score=115.13 Aligned_cols=73 Identities=29% Similarity=0.407 Sum_probs=68.2
Q ss_pred CEEEEEcCCC---cEEEEEe--------ecC-ccHHHHHHHHhhhc--CCCCcc-ceEEecCeeccCCCccccccccccc
Q 016849 1 MQIFVKTLTG---KTITLEV--------ESS-DTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (381)
Q Consensus 1 ~~i~~~~~~g---~~~~~~v--------~~~-dtv~~~K~~i~~~~--~ip~~~-q~l~~~g~~L~d~~tl~~~~i~~~s 65 (381)
|+|+|++.+| +++++++ .++ +||.+||++|++++ |+|+++ |+|+|.|+.|+|+.+|++|+|.+++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999999 8999994 454 99999999999999 999999 9999999999999999999999999
Q ss_pred cceeeEee
Q 016849 66 TLHLVLRL 73 (381)
Q Consensus 66 ~i~l~~~~ 73 (381)
++|++.+.
T Consensus 93 ~i~lv~~~ 100 (107)
T 1x1m_A 93 TVHVLRKS 100 (107)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 99998864
No 146
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.54 E-value=1e-14 Score=111.36 Aligned_cols=71 Identities=18% Similarity=0.342 Sum_probs=66.1
Q ss_pred CeeeEEEeeCCcEE-EEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 304 GMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 304 ~m~I~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
.|+|+|+ ..|+++ .++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+..
T Consensus 7 ~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 7 GYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp EEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred EEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 4789998 478999 6999999999999999999999999999999999999999 999999999999998643
No 147
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.54 E-value=1.5e-14 Score=113.00 Aligned_cols=76 Identities=28% Similarity=0.383 Sum_probs=69.7
Q ss_pred cCeeeEEEeeCC---cEEEEEee--------C-cchHHHHHHHHHhHh--CCCCCC-eEEEECCEEcCCCCcccccCCCC
Q 016849 303 GGMQIFVKTLTG---KTITLEVE--------S-SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK 367 (381)
Q Consensus 303 ~~m~I~v~~~~g---~~~~~~v~--------~-~~tV~~lK~~i~~~~--gi~~~~-q~L~~~g~~L~d~~~L~~~~i~~ 367 (381)
..|+|+|+..+| +++.++++ + ++||.+||++|++.+ |+|++. |+|+|+|+.|+|+.+|++|||++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 458999999988 88999954 4 499999999999999 999999 99999999999999999999999
Q ss_pred CCEEEEEEecC
Q 016849 368 ESTLHLVLRLR 378 (381)
Q Consensus 368 ~~~i~l~~~~~ 378 (381)
|++|+|+.+..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999998754
No 148
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.52 E-value=4.5e-14 Score=107.23 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=62.5
Q ss_pred CeeeEEEeeCC--cEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEEC--CE---Ec-CCCCcccccCCCCCCEEEEE
Q 016849 304 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 304 ~m~I~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~--g~---~L-~d~~~L~~~~i~~~~~i~l~ 374 (381)
.+.|+|+...+ +.+++++++++||++||++|+.++|||+++|+|+|. |+ .| +|+.+|++|||++|++|+|+
T Consensus 15 ~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 15 FIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 35677776555 489999999999999999999999999999999997 55 45 89999999999999999986
No 149
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=4.2e-14 Score=107.41 Aligned_cols=74 Identities=24% Similarity=0.453 Sum_probs=67.6
Q ss_pred cCeeeEEEeeCCcEEEEEeeCc-----chHHHHHHHHHhHhCCCCCCeEEEECCEEcCC-CCcccccCCCCCCEEEEEEe
Q 016849 303 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~-----~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d-~~~L~~~~i~~~~~i~l~~~ 376 (381)
..|+|+|+. .|+.+.++++++ +||.+||++|++.+|+|++.|+|+|+|+.|+| +.+|++|||++|++|+|+.+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 358899997 588999999995 99999999999999999999999999999998 56899999999999999865
Q ss_pred c
Q 016849 377 L 377 (381)
Q Consensus 377 ~ 377 (381)
.
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 150
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.51 E-value=3.8e-14 Score=129.62 Aligned_cols=77 Identities=94% Similarity=1.277 Sum_probs=72.2
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 378 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 378 (381)
...|+|+|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|++|+|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999985
No 151
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.50 E-value=2.7e-14 Score=130.61 Aligned_cols=73 Identities=96% Similarity=1.295 Sum_probs=69.8
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~ 73 (381)
|+|+|++++|++++++|.+++||.+||++|++++|+|+++|+|+|.|+.|+|+.+|++|+|.++++|||++++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998875
No 152
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=4e-14 Score=107.55 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=66.7
Q ss_pred CEEEEEcCCCcEEEEEeecC-----ccHHHHHHHHhhhcCCCCccceEEecCeeccC-CCccccccccccccceeeEee
Q 016849 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 73 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~-----dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d-~~tl~~~~i~~~s~i~l~~~~ 73 (381)
|+|+|++ .|+++.+++.++ +||.+||++|+++.|+|+++|+|+|.|+.|+| +.+|++|+|.++++||++.+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 6899999 589999999995 99999999999999999999999999999998 568999999999999997753
No 153
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=1.6e-14 Score=110.18 Aligned_cols=70 Identities=19% Similarity=0.352 Sum_probs=64.8
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEe
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
|+|+|+ .+|+++.+++.+++||.+||++|+++.|+|+++|+|+|.|+.| |+.+|++|+|.++++|||+..
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEec
Confidence 578888 5799999999999999999999999999999999999999999 555999999999999998654
No 154
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.49 E-value=9.5e-14 Score=105.12 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=72.9
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
+..|.|.|++.+|+.+.+.|.+++++..|+.+++++.|++++.++|+|+|+.|.++.|+++|++++|++|+++++++||
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 3457889999999999999999999999999999999999999999999999999999999999999999999999998
No 155
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.1e-14 Score=107.69 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=64.6
Q ss_pred CeeeEEEeeCCcEE--EE-EeeCcchHHHHHHHHHhH-hCCCCCCeEEEEC--CEEcCCCCcccccCCCCCCEEEE
Q 016849 304 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 373 (381)
Q Consensus 304 ~m~I~v~~~~g~~~--~~-~v~~~~tV~~lK~~i~~~-~gi~~~~q~L~~~--g~~L~d~~~L~~~~i~~~~~i~l 373 (381)
.|+|+|++..|+.+ .+ +|+|++||++||++|++. .|+||++|+|+|. |+.|+|+.+|++|||++|++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 48999999988775 58 999999999999999995 8999999999976 99999999999999999999876
No 156
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=6.3e-14 Score=106.20 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=72.8
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|.|++.+|+.+.+.|.+++++..||+++++++|+|+++|+|+|.|++|.++.|+++|+++++++|+++++..++
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999976654
No 157
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=2.3e-14 Score=109.31 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=65.0
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
.|+|+|+ ..|+++.+++++++||.+||++|++.+|+|+++|+|+|.|+.|+ +.+|++|+|++|++|+|+..
T Consensus 17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCS
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEec
Confidence 4778888 57899999999999999999999999999999999999999995 45999999999999998754
No 158
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.48 E-value=3.8e-14 Score=107.89 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=61.2
Q ss_pred EEEEEcCCC--cEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCe---e----ccCCCccccccccccccceeeE
Q 016849 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL 71 (381)
Q Consensus 2 ~i~~~~~~g--~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~---~----L~d~~tl~~~~i~~~s~i~l~~ 71 (381)
.++|...+. +++++++.+++||.+||+||+.++|||+++|+|+|+|+ . ++|+++|++|+|.++++||++-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 456665444 58999999999999999999999999999999999983 3 4899999999999999999864
No 159
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.48 E-value=4.8e-14 Score=105.06 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=59.6
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE-------CCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~-------~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
...+.....+++++||++||++|+.++|+|+++|+|+| .|+.++|+.+|++|||++|++|||+-+
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 45667889999999999999999999999999999997 488899999999999999999999853
No 160
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=9e-14 Score=107.06 Aligned_cols=79 Identities=15% Similarity=0.340 Sum_probs=76.1
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
..|.|.|++.+|+.+.+.|.+++++..|+.+++++.|++++.++|+|+|+.|.++.|+++|++++|++|+++++++||+
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999999995
No 161
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.45 E-value=2.7e-13 Score=104.35 Aligned_cols=77 Identities=13% Similarity=0.320 Sum_probs=71.6
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
..|+|.|++ +|+...++|.+++++..|+.+++++.|++++.++|+|+|+.|.++.|+++|++++|++|++.++++||
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 447899999 99999999999999999999999999999999999999999999999999999999999999999998
No 162
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.45 E-value=8e-14 Score=131.22 Aligned_cols=74 Identities=31% Similarity=0.566 Sum_probs=69.6
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhh---hcCCCCccceEEecCeeccCCCccccccccccccc-eeeEeec
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 74 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~---~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i-~l~~~~~ 74 (381)
|+|+|++++|++++++|.+++||.+||++|++ ++|+|+++|+|+|.|+.|+|+++|++|+|.++++| +++.+.+
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999 78899999999999999999999999999999998 6666554
No 163
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.45 E-value=1.5e-13 Score=104.65 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=61.0
Q ss_pred eeeEEEeeC--CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECC---EE----cCCCCcccccCCCCCCEEEEEE
Q 016849 305 MQIFVKTLT--GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 305 m~I~v~~~~--g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g---~~----L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
+.++|...+ +..+++++++++||++||++|+.++|||+++|+|+|.| +. ++|+.+|++|+|++|++|+|+-
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 445555533 35799999999999999999999999999999999987 33 4899999999999999999863
No 164
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.44 E-value=9.4e-14 Score=108.32 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=65.9
Q ss_pred CEEEEEcCCCcEEEEEee-cCccHHHHHHHHhhhcCCCCccceEEecCe-----------e----ccCCCcccccccccc
Q 016849 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~-~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~-----------~----L~d~~tl~~~~i~~~ 64 (381)
|+|+|++.+|+. +++|. +++||.+||++|++++|||+++|+|+|.|+ . ++|+.+|++|+|.++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999976 89999 999999999999999999999999999988 4 578899999999999
Q ss_pred ccceeeEe
Q 016849 65 STLHLVLR 72 (381)
Q Consensus 65 s~i~l~~~ 72 (381)
++|||...
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99999763
No 165
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.43 E-value=1.2e-13 Score=129.99 Aligned_cols=78 Identities=31% Similarity=0.572 Sum_probs=73.8
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHh---HhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEE-EEEEecC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 378 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~---~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i-~l~~~~~ 378 (381)
..|+|+|++.+|+++.++|++++||.+||.+|++ +.|+|+++|+|+|+|+.|+|+++|++|||++|++| +++.|.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 4699999999999999999999999999999999 57799999999999999999999999999999998 8888888
Q ss_pred CC
Q 016849 379 GG 380 (381)
Q Consensus 379 GG 380 (381)
||
T Consensus 86 ~~ 87 (368)
T 1oqy_A 86 AG 87 (368)
T ss_dssp SS
T ss_pred CC
Confidence 76
No 166
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.40 E-value=2.9e-13 Score=105.03 Aligned_cols=80 Identities=15% Similarity=0.391 Sum_probs=76.0
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
+..|.|.|++.+|+.+.++|.+++++..|+.+++++.|++++.++|+|+|+.|.+++|+++|++++|++|++++.++||.
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999994
No 167
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.40 E-value=1.8e-13 Score=106.70 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=66.0
Q ss_pred CeeeEEEeeCCcEEEEEee-CcchHHHHHHHHHhHhCCCCCCeEEEECCE-----------E----cCCCCcccccCCCC
Q 016849 304 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK 367 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~-----------~----L~d~~~L~~~~i~~ 367 (381)
.|.|+|++.+|+. .++|+ +++||.+||++|++++|+|++.|+|++.|+ . ++|+.+|++|||++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 4899999999976 78999 999999999999999999999999999888 4 57899999999999
Q ss_pred CCEEEEEEe
Q 016849 368 ESTLHLVLR 376 (381)
Q Consensus 368 ~~~i~l~~~ 376 (381)
|++|||...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999998754
No 168
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=4.3e-13 Score=102.32 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=61.0
Q ss_pred EEEEEcCCCc-EEEEEeecCccHHHHHHHHhhhcCCCCccceEEecC---ee----ccCCCccccccccccccceeeE
Q 016849 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (381)
Q Consensus 2 ~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g---~~----L~d~~tl~~~~i~~~s~i~l~~ 71 (381)
.|+|+..++. .+++++.+++||.+||++|++++|||+++|+|+|.| +. ++|+++|++|+|.+++++|++-
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 4566665442 789999999999999999999999999999999987 43 5899999999999999999864
No 169
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=1e-12 Score=98.69 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=72.3
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|.|++|.++.|+++|++.++++|+++++..++
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999876553
No 170
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=7e-13 Score=101.12 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=61.2
Q ss_pred eeeEEEeeCCc-EEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECC---EE----cCCCCcccccCCCCCCEEEEEE
Q 016849 305 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 305 m~I~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g---~~----L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
+.++|+..... .+++++++++||++||++|+.++|+|+++|+|+|.| +. ++|+.+|++|||++|++|||+-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 45666654432 689999999999999999999999999999999976 43 5899999999999999999863
No 171
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.37 E-value=2.3e-12 Score=92.75 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.9
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 374 (381)
|+|.|++.+|+.+.++|.++++++.|+++++++.|+|+++++|+|+|+.|.+++|+++|++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999986
No 172
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.36 E-value=1.7e-12 Score=93.51 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=68.0
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~ 70 (381)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|.|++|.++.|+++|++.++++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6799999999999999999999999999999999999999999999999999999999999999999985
No 173
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.34 E-value=1.6e-12 Score=103.69 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=62.2
Q ss_pred EEEEEcCCCc-EEEEEeecCccHHHHHHHHhhhcCCCCccceEEecC---e---e-ccCCCccccccccccccceeeEe
Q 016849 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 2 ~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g---~---~-L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
.|+|+..++. .+++++.+++||.+||++|+.++|||+++|+|+|.| + + ++|+++|++|+|.++++||++..
T Consensus 8 ~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 8 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 4667765543 789999999999999999999999999999999987 3 3 47899999999999999999763
No 174
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.34 E-value=3e-12 Score=102.17 Aligned_cols=71 Identities=14% Similarity=0.260 Sum_probs=61.7
Q ss_pred eeeEEEeeCCc-EEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECC---E---E-cCCCCcccccCCCCCCEEEEEE
Q 016849 305 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 305 m~I~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g---~---~-L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
+.|+|+...+. .+++++++++||++||.+|+..+|||+++|+|+|.| + . ++|+.+|++|||++|++|||+-
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 56667665442 689999999999999999999999999999999976 4 3 4789999999999999999885
No 175
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.33 E-value=3.5e-12 Score=96.49 Aligned_cols=75 Identities=16% Similarity=0.379 Sum_probs=70.5
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|.|++.+|+.+.+.|.+++++..|+++++++.|+|+++++|+|.|++|.++.|+++|++.++++|+++++..|
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999887654
No 176
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.31 E-value=9.4e-12 Score=91.18 Aligned_cols=73 Identities=10% Similarity=0.254 Sum_probs=69.1
Q ss_pred ecCeeeEEEeeCCc-EEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 016849 302 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 302 ~~~m~I~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 374 (381)
...|+|.|++.+|+ .+.+.|.+++++..|+.+++++.|+++++++|+|+|+.|.+++|+++|++++|++|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34588999999996 89999999999999999999999999999999999999999999999999999999985
No 177
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.30 E-value=1.9e-12 Score=96.79 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=63.3
Q ss_pred eeeEEEeeCCcEEEEE-eeCcchHHHHHHHHHhHhCCCCCCeEEEEC--CEEcC---CCCcccccCCCCCCEEEEEEe
Q 016849 305 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~-v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~--g~~L~---d~~~L~~~~i~~~~~i~l~~~ 376 (381)
|+|+|+..+|+. .++ +++++||++||++|++.+|+|++.|+|.|+ ++.|+ |+.+|++|||.+|++|+|.-.
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 789999999965 477 999999999999999999999999999997 47774 678999999999999998643
No 178
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.30 E-value=2.1e-12 Score=96.53 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=63.8
Q ss_pred CEEEEEcCCCcEEEEE-eecCccHHHHHHHHhhhcCCCCccceEEec--Ceecc---CCCccccccccccccceeeEe
Q 016849 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~-v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~--g~~L~---d~~tl~~~~i~~~s~i~l~~~ 72 (381)
|+|.|++.+|+.. +. +.+++||.+||++|+++.|+|+++|+|.|. ++.|+ ++.+|++|+|.+++++++.-.
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 8999999999764 77 999999999999999999999999999997 47774 678999999999999988643
No 179
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=4.7e-12 Score=97.44 Aligned_cols=76 Identities=16% Similarity=0.376 Sum_probs=72.1
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|.|++.+|+.+.+.|.+++++..|+++++++.|+|+++++|+|.|++|.++.|+++|++.++++|+++++..++
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999998876543
No 180
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.28 E-value=8.8e-12 Score=91.34 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=67.3
Q ss_pred CEEEEEcCCCc-EEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceee
Q 016849 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (381)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~ 70 (381)
|+|.|++.+|+ .+.+.|.+++++..|+++.+++.|+|+++++|+|.|++|.++.|+++|++.++++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57999999996 89999999999999999999999999999999999999999999999999999999874
No 181
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.28 E-value=3.8e-12 Score=98.73 Aligned_cols=77 Identities=16% Similarity=0.428 Sum_probs=73.2
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCCe
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~~ 77 (381)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++|+|+|.|++|.++.|+++|++.++++|++++...+++
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999877664
No 182
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.26 E-value=9.8e-12 Score=95.66 Aligned_cols=74 Identities=12% Similarity=0.314 Sum_probs=69.7
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~ 75 (381)
|+|.|++ +|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|.++|++.++++|+++++..+
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~G 105 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 105 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeeccc
Confidence 5789999 9999999999999999999999999999999999999999999999999999999999999887654
No 183
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.16 E-value=2.5e-11 Score=112.62 Aligned_cols=76 Identities=21% Similarity=0.429 Sum_probs=68.1
Q ss_pred CCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE---EcCeeccCCCcccccccccCCceeEEEeeec
Q 016849 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~g~~L~d~~tl~~~~i~~~~~i~l~~~~~~ 151 (381)
..|.|+|+ .+|+.+.+++++++||.+||++|++++|+||++|+|+ |+|+.|+|+.+|++|+|++|++|+|+.++..
T Consensus 4 ~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 4 KEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 35788998 5899999999999999999999999999999999999 8999999999999999999999999976554
No 184
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.16 E-value=3.1e-11 Score=111.99 Aligned_cols=71 Identities=23% Similarity=0.467 Sum_probs=64.5
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE---ECCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
.|.|.|+ ..|+++.+++++++||++||++|++.+||||++|+|+ |+|+.|+|+.+|++|||++|++|+|+-
T Consensus 5 ~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 5 EVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVG 78 (320)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEEC
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEc
Confidence 3677788 5899999999999999999999999999999999999 899999999999999999999999874
No 185
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.16 E-value=2e-10 Score=89.10 Aligned_cols=77 Identities=17% Similarity=0.385 Sum_probs=73.3
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 379 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~G 379 (381)
..++|.|++.+|....+.|.+++++..|+...+++.|++++.++++|+|+.|.++.|.+++++++|++|++...+.|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 45788889999999999999999999999999999999999999999999999999999999999999999998876
No 186
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.09 E-value=1.6e-10 Score=96.32 Aligned_cols=78 Identities=12% Similarity=0.287 Sum_probs=73.3
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
..++|.|+ .+|..+.++|.+++++..|++..+++.|+++..++++|+|+.|.+++|.+++++++|++|++...++||+
T Consensus 56 e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 56 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 34677776 4899999999999999999999999999999999999999999999999999999999999999999995
No 187
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.09 E-value=3.5e-10 Score=86.41 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=61.2
Q ss_pred eeeEEEe---eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECC-------EEc-CCCCcccccCCCCCCEEEE
Q 016849 305 MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHL 373 (381)
Q Consensus 305 m~I~v~~---~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g-------~~L-~d~~~L~~~~i~~~~~i~l 373 (381)
+.++|++ .+|+.+...+.+++||++||.+|+..+|+|+..|+|.|.+ ..| +|+.+|++|+|++|++|+|
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 3455554 4688999999999999999999999999999999999862 235 5778999999999999998
Q ss_pred EEe
Q 016849 374 VLR 376 (381)
Q Consensus 374 ~~~ 376 (381)
...
T Consensus 90 ~d~ 92 (97)
T 1wjn_A 90 RWS 92 (97)
T ss_dssp ECC
T ss_pred Eec
Confidence 763
No 188
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.07 E-value=4.6e-10 Score=95.98 Aligned_cols=78 Identities=13% Similarity=0.276 Sum_probs=73.4
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
..++|.|+ .+|+...+.|.+++++..||...+++.|++++++|+.|+|+.|.++.|.+++++++|++|++...+.||+
T Consensus 28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 34677776 4899999999999999999999999999999999999999999999999999999999999999999995
No 189
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=99.04 E-value=2.4e-07 Score=91.93 Aligned_cols=349 Identities=12% Similarity=0.153 Sum_probs=225.9
Q ss_pred cEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCee--------ccC-----CCccccccccccccceeeEee----
Q 016849 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--------LED-----GRTLADYNIQKESTLHLVLRL---- 73 (381)
Q Consensus 11 ~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~--------L~d-----~~tl~~~~i~~~s~i~l~~~~---- 73 (381)
...++.|..+.|+.++|+.|.+..|+|+++|||+.-... +.+ +.++.++.- +.+.+.+.+..
T Consensus 36 ~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~ 114 (530)
T 2ylm_A 36 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPE 114 (530)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHH
T ss_pred CcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccc
Confidence 344789999999999999999999999999999974221 111 122333211 22233343311
Q ss_pred -------------cCCeEEEEEccC--CcEE----EEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEc------Ceecc-
Q 016849 74 -------------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE- 127 (381)
Q Consensus 74 -------------~~~~~i~v~~~~--g~~~----~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~------g~~L~- 127 (381)
...+-|++|..+ .+++ .+.|+.+++|.++-..|.++.|+|++.-..+|. ...|+
T Consensus 115 ~~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~ 194 (530)
T 2ylm_A 115 LAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQD 194 (530)
T ss_dssp HHTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCC
T ss_pred cCCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccc
Confidence 124778888655 2343 467899999999999999999999988776665 34577
Q ss_pred CCCccccc--ccccCCceeEEEeee------------------cceeeEEEe---ccCcEEEEEecCCchHHHHHHHhhh
Q 016849 128 DGRTLADY--NIQKESTLHLVLRLR------------------GGMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQD 184 (381)
Q Consensus 128 d~~tl~~~--~i~~~~~i~l~~~~~------------------~~~~v~v~~---~~g~~~~i~v~~~~tV~~lK~~i~~ 184 (381)
.+.|+.+. .+.+|+.|....... ..+.|.++. .+...+.+.++...|-.++.++|.+
T Consensus 195 ~~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~ 274 (530)
T 2ylm_A 195 YDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQ 274 (530)
T ss_dssp SSSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHH
T ss_pred ccccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHH
Confidence 67899999 999999988876533 113444443 2356799999999999999999999
Q ss_pred hhCCCCCceEEEec----Cc---c--cCCCCcccccccC----CCCEEEEEEeec--------cceeeeEEeccC--cEE
Q 016849 185 KEGIPPDQQRLIFA----GK---Q--LEDGRTLADYNIQ----KESTLHLVLRLR--------GGMQIFVKTLTG--KTI 241 (381)
Q Consensus 185 ~~~ip~~~q~L~~~----g~---~--L~d~~tL~~y~i~----~~~~i~l~~~~~--------~~~~i~vk~~~g--~~~ 241 (381)
..++.|+..+|.-. |. . ...+.+|.+.=.. .-+.++..+-.- ..+.++....+. ..+
T Consensus 275 ~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~ 354 (530)
T 2ylm_A 275 RLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEI 354 (530)
T ss_dssp HHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEE
T ss_pred HhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEE
Confidence 99999998887622 21 1 2223454432211 123443333211 123333332222 255
Q ss_pred EEEEecCCcHHHHHHhhhhccCCCc---ccceee--ecCcc---ccCCccccccccccCceeeEEEEee--------cCe
Q 016849 242 TLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGKQ---LEDGRTLADYNIQKESTLHLVLRLR--------GGM 305 (381)
Q Consensus 242 ~~~v~~~~tV~~Lk~~i~~~~~ip~---~~q~L~--~~g~~---l~d~~tl~~y~i~~~~tl~l~~~~~--------~~m 305 (381)
.+-+..+.||+||-..+..+.+++. ...++. ++++. ++++.++...+=....++++..-+. ..+
T Consensus 355 ~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~ 434 (530)
T 2ylm_A 355 TLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEM 434 (530)
T ss_dssp EECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEE
T ss_pred EEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcE
Confidence 6777789999999999999999874 334443 55554 5667777654322244554432211 112
Q ss_pred eeEEEe-------eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCC---CeE--EEECC--EEcCCCCcc
Q 016849 306 QIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---QQR--LIFAG--KQLEDGRTL 360 (381)
Q Consensus 306 ~I~v~~-------~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~---~q~--L~~~g--~~L~d~~~L 360 (381)
-|.|.. .-|..+.+.|.++.|..++|++|.+++|++.. ..+ ++-.+ ..++|+..+
T Consensus 435 li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d~~ 503 (530)
T 2ylm_A 435 LVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYE 503 (530)
T ss_dssp EEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTTCC
T ss_pred EEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCccce
Confidence 334432 23778999999999999999999999999855 333 34344 457775543
No 190
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.98 E-value=5.8e-11 Score=100.36 Aligned_cols=80 Identities=13% Similarity=0.297 Sum_probs=1.6
Q ss_pred eecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 301 ~~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
++..|+|.| ..+|+...++|.+++++..|++..+++.|++++.+++.|+|+.+.+++|.+++++++|++|++...++||
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 355688888 7799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 016849 381 F 381 (381)
Q Consensus 381 ~ 381 (381)
+
T Consensus 97 ~ 97 (227)
T 3v7o_A 97 L 97 (227)
T ss_dssp C
T ss_pred c
Confidence 6
No 191
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.91 E-value=4.2e-09 Score=80.31 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=62.2
Q ss_pred CeEEEEEc---cCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcC-------eec-cCCCcccccccccCCcee
Q 016849 76 GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLH 144 (381)
Q Consensus 76 ~~~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g-------~~L-~d~~tl~~~~i~~~~~i~ 144 (381)
.+.|+|+. .+|..+...+.+++||.+||.+|+..+|+|+..|+|.|.+ ..| +|..+|++|++.+|++||
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~ 88 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL 88 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence 35666664 4678899999999999999999999999999999999863 224 678899999999999999
Q ss_pred EEEe
Q 016849 145 LVLR 148 (381)
Q Consensus 145 l~~~ 148 (381)
+...
T Consensus 89 V~d~ 92 (97)
T 1wjn_A 89 VRWS 92 (97)
T ss_dssp EECC
T ss_pred EEec
Confidence 9863
No 192
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.85 E-value=1.7e-08 Score=78.29 Aligned_cols=74 Identities=16% Similarity=0.388 Sum_probs=70.4
Q ss_pred CCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEe
Q 016849 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~ 148 (381)
..|.|.|+..+|+.+.+.|.+++++..|+..++++.|++++.++|+|.|+.|.++.|.+++++.+|++|+++..
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999864
No 193
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.75 E-value=8.4e-08 Score=67.45 Aligned_cols=68 Identities=16% Similarity=0.311 Sum_probs=61.2
Q ss_pred EEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCC-CeEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~-~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
..+.....-+.+.|.++++|.+|.+..+.+.|||++ ..+|.|+|..|++++++++|++++|+.|.+.+
T Consensus 13 ~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 13 LLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred hhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 344444445889999999999999999999999999 99999999999999999999999999999875
No 194
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.64 E-value=9e-08 Score=81.78 Aligned_cols=78 Identities=13% Similarity=0.300 Sum_probs=72.3
Q ss_pred cCCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEeeecc
Q 016849 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (381)
Q Consensus 74 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~~~~ 152 (381)
..-++|.|+ .+|+.+.+.+.+++++..|+..++++.|+|++.++|+|.|+.|.++.|.+++++.+|++|+++....++
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 456888887 489999999999999999999999999999999999999999999999999999999999999887554
No 195
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.61 E-value=7.6e-08 Score=80.35 Aligned_cols=78 Identities=12% Similarity=0.280 Sum_probs=72.6
Q ss_pred cCCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEeeecc
Q 016849 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (381)
Q Consensus 74 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~~~~ 152 (381)
...|.|.|+ .+|+.+.+.|.+++++..|++.++++.|+++..++|+|.|+.|.++.|.+++++.+|++|+++....++
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 445788887 489999999999999999999999999999999999999999999999999999999999999887766
No 196
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.58 E-value=2.6e-08 Score=72.77 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=60.4
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEE---c--CCCCcccccCCCCCCEEEEE
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~---L--~d~~~L~~~~i~~~~~i~l~ 374 (381)
.+|.|.++..+| ++.+++++++|+.+|+++|++.++++++.|.++++-.+ | .++.+|+++||++|++|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 358899999987 57788999999999999999999999999888775443 3 47789999999999999975
No 197
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.57 E-value=2.8e-07 Score=69.44 Aligned_cols=72 Identities=13% Similarity=0.278 Sum_probs=66.7
Q ss_pred cCeeeEEEeeCCc-EEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 016849 303 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 303 ~~m~I~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 374 (381)
..+.|.|+..+|. ...+.|.++++...|+...+++.|++++..+++|+|..|.++.|.+++++++|++|.+.
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4467778888885 88999999999999999999999999999999999999999999999999999999875
No 198
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.54 E-value=2.3e-07 Score=80.82 Aligned_cols=80 Identities=13% Similarity=0.288 Sum_probs=74.0
Q ss_pred eecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 301 ~~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.+..+.|.|++ +|+...+++.+++++..||++.+++.|+++++++++|+|+.+.+++|.++++++++++|++...+.||
T Consensus 18 ~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred CCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 34456777777 78888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 016849 381 F 381 (381)
Q Consensus 381 ~ 381 (381)
+
T Consensus 97 ~ 97 (209)
T 3uf8_A 97 S 97 (209)
T ss_dssp C
T ss_pred c
Confidence 5
No 199
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.49 E-value=1.1e-06 Score=61.84 Aligned_cols=71 Identities=15% Similarity=0.323 Sum_probs=65.0
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCC-CeEEEEcCeeccCCCcccccccccCCceeEEE
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~ 147 (381)
+++.+++.....+.+.+.++.+|.++-.....+.|||++ ..+|.|.|..|+.+.++.+|++.+|+.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 456667777778999999999999999999999999999 89999999999999999999999999998864
No 200
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.48 E-value=1.7e-08 Score=93.58 Aligned_cols=80 Identities=13% Similarity=0.306 Sum_probs=0.6
Q ss_pred eecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 301 ~~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
++..+.|.|++ +|+...++|.+++++..|++..+++.|++++.+++.|+|+.+.+++|.+++++++|++|++..+++||
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 34456777876 68889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 016849 381 F 381 (381)
Q Consensus 381 ~ 381 (381)
+
T Consensus 97 ~ 97 (360)
T 3ix6_A 97 M 97 (360)
T ss_dssp C
T ss_pred H
Confidence 5
No 201
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.42 E-value=8.2e-07 Score=66.01 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=42.8
Q ss_pred EcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeecc
Q 016849 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (381)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~ 51 (381)
-...++.+++.+.+.+||..+|++|++++|||+.+|+|+|.|++|.
T Consensus 19 ~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 19 SLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp ETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred EcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 3567889999999999999999999999999999999999998876
No 202
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.41 E-value=3.2e-08 Score=83.73 Aligned_cols=75 Identities=13% Similarity=0.328 Sum_probs=0.4
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceeeEeecCC
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~~~~~~~ 76 (381)
|+|.| +.+|+.+.+.|.+++.+..|++...++.|+|+++++++|+|+.+.++.|.+++++.++++|++++...|+
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp ---------------------------------------------------------------------------C
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 56788 7899999999999999999999999999999999999999999999999999999999999998876554
No 203
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.35 E-value=2.5e-06 Score=62.98 Aligned_cols=72 Identities=14% Similarity=0.276 Sum_probs=66.5
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
..+.|.|+. .|....+.+..++....|+...+++.|++++..++.|+|..+.++.|.+++++++|++|++.+
T Consensus 20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 336677774 789999999999999999999999999999999999999999999999999999999999764
No 204
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.21 E-value=7.8e-07 Score=64.82 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=58.5
Q ss_pred CCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCee---c--cCCCcccccccccCCceeEE
Q 016849 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~---L--~d~~tl~~~~i~~~~~i~l~ 146 (381)
+.|.|.|++.+| .+.+++++++|+.+|+++|++.++++++.|.+.++... | .++.+++++|+++|+.|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 357788888877 56778999999999999999999999999888755433 3 47889999999999998874
No 205
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.21 E-value=6.9e-06 Score=61.77 Aligned_cols=72 Identities=13% Similarity=0.278 Sum_probs=66.8
Q ss_pred CCeEEEEEccCCc-EEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEE
Q 016849 75 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 75 ~~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~ 146 (381)
..+.|.|+..+|+ .+.+.|.+++++..|....+++.|++++..+|.|.|..|..+.|..++++.+|++|.+.
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4578888888885 89999999999999999999999999999999999999999999999999999999874
No 206
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.18 E-value=0.00025 Score=70.25 Aligned_cols=265 Identities=12% Similarity=0.127 Sum_probs=179.7
Q ss_pred EEEEc--CCCcEEE----EEeecCccHHHHHHHHhhhcCCCCccceEEec------Ceecc-CCCccccc--cccccccc
Q 016849 3 IFVKT--LTGKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DGRTLADY--NIQKESTL 67 (381)
Q Consensus 3 i~~~~--~~g~~~~----~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~------g~~L~-d~~tl~~~--~i~~~s~i 67 (381)
||+|. +..+++. +-|..+++|.++-..|.+..|+|++..-.+|. ...|+ .+.|+.+. .+.+|+.|
T Consensus 133 lFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII 212 (530)
T 2ylm_A 133 LFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDII 212 (530)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEE
T ss_pred EEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEE
Confidence 56663 3344554 67889999999999999999999999888885 44466 57799999 99999987
Q ss_pred eeeEeec------------------CCeEEEEEc---cCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEE----c
Q 016849 68 HLVLRLR------------------GGMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----A 122 (381)
Q Consensus 68 ~l~~~~~------------------~~~~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~----~ 122 (381)
-+-.... ..+.|.++. .+...+.++++...|-.++-++++++.|+.|...+|.- .
T Consensus 213 ~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~ 292 (530)
T 2ylm_A 213 VFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYR 292 (530)
T ss_dssp EEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTS
T ss_pred EEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEeccccc
Confidence 6655322 125566664 23567999999999999999999999999998887752 2
Q ss_pred Ce---ec--cCCCcccccccc-cCCc---eeEEE-e-------eecceeeEEEeccC--cEEEEEecCCchHHHHHHHhh
Q 016849 123 GK---QL--EDGRTLADYNIQ-KEST---LHLVL-R-------LRGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQ 183 (381)
Q Consensus 123 g~---~L--~d~~tl~~~~i~-~~~~---i~l~~-~-------~~~~~~v~v~~~~g--~~~~i~v~~~~tV~~lK~~i~ 183 (381)
|+ .+ ..+.+|.+.=-. ..++ +.-.+ . ....+.|+....+. ..+.+-++.+.||.+|-+.+.
T Consensus 293 ~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~ 372 (530)
T 2ylm_A 293 DGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECK 372 (530)
T ss_dssp CSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHH
T ss_pred CCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHH
Confidence 22 11 233454443211 1111 11111 1 12345555443322 256677889999999999999
Q ss_pred hhhCCCC---CceEEE--ecCc---ccCCCCcccccccCCCCEEEEEEeecc--------ceeeeEEe-------ccCcE
Q 016849 184 DKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLRG--------GMQIFVKT-------LTGKT 240 (381)
Q Consensus 184 ~~~~ip~---~~q~L~--~~g~---~L~d~~tL~~y~i~~~~~i~l~~~~~~--------~~~i~vk~-------~~g~~ 240 (381)
++.+++. ...++. ++++ .+.++.+++..+=....++.+..-+.. ...|.|.. ..|..
T Consensus 373 k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~P 452 (530)
T 2ylm_A 373 KAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIP 452 (530)
T ss_dssp TTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEE
T ss_pred HhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEEEEEEeccCcccccCCC
Confidence 9999873 556664 6664 567777777654333555555433221 12223322 35889
Q ss_pred EEEEEecCCcHHHHHHhhhhccCCCcc
Q 016849 241 ITLEVESSDTIDNVKAKIQDKEGIPPD 267 (381)
Q Consensus 241 ~~~~v~~~~tV~~Lk~~i~~~~~ip~~ 267 (381)
+.+.+.++.|++++|+.|++++|++..
T Consensus 453 F~~~v~~gEt~~~~k~Rl~~rlgv~~k 479 (530)
T 2ylm_A 453 FLLRIHQGEHFREVMKRIQSLLDIQEK 479 (530)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred eEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence 999999999999999999999999854
No 207
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.16 E-value=6.5e-05 Score=71.31 Aligned_cols=136 Identities=24% Similarity=0.356 Sum_probs=108.0
Q ss_pred CcEEEEEEecCCcHHHHHHhhhhccC----CCcccceeeec------CccccCCccccccccccCceeeEEEEeecCeee
Q 016849 238 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 307 (381)
Q Consensus 238 g~~~~~~v~~~~tV~~Lk~~i~~~~~----ip~~~q~L~~~------g~~l~d~~tl~~y~i~~~~tl~l~~~~~~~m~I 307 (381)
+.+-++..+++.||.++...|.++.+ .+...+.|.+. |.=|.+++||..|++.+++.++...+ ++.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~---~~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKK---QRPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEEC---EEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCc---eeEE
Confidence 55677899999999999999988874 46778888883 33388999999999999999887654 5688
Q ss_pred EEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCC-CeEEEECC---------EEcCCCCcccccCCCCCCEEEEEEe
Q 016849 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~-~q~L~~~g---------~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
.|..++|....+.+++++|+.|+-..|+++.|+... .+-|++.. .-|+.++++.+.+.....++++..+
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK 167 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRK 167 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence 999999999999999999999999999999997643 34455421 2345567788777766777776554
No 208
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.11 E-value=3.5e-07 Score=87.59 Aligned_cols=77 Identities=12% Similarity=0.299 Sum_probs=0.0
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
.+.|.|++ +|....++|.++++...||+..+++.|+++.+++++|+|+.+.+++|.+++++++|++|++...++||+
T Consensus 30 ~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 30 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 35666666 778889999999999999999999999999999999999999999999999999999999999999995
No 209
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.10 E-value=1.1e-05 Score=59.90 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=46.5
Q ss_pred EccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeec--cCCCcccccc
Q 016849 82 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYN 136 (381)
Q Consensus 82 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L--~d~~tl~~~~ 136 (381)
....+..+.+.+.+++||..+|++|++++|||+++|+|+|.|+.| +.+..-..|-
T Consensus 19 ~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 19 SLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp ETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSC
T ss_pred EcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCC
Confidence 345678899999999999999999999999999999999999765 4555555553
No 210
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.06 E-value=2.3e-05 Score=68.10 Aligned_cols=93 Identities=14% Similarity=0.304 Sum_probs=78.6
Q ss_pred eeecceeeEEEeccCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEeecc
Q 016849 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (381)
Q Consensus 148 ~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~ 227 (381)
.+...+.|.|.. ++..+.+.+..+++...|++..+++.|+|+++++|+|.|+.+.++.|..+..+.++++|.+.....+
T Consensus 17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 334556777776 6788899999999999999999999999999999999999999999999999999999999988877
Q ss_pred ceeeeEEeccCcEEE
Q 016849 228 GMQIFVKTLTGKTIT 242 (381)
Q Consensus 228 ~~~i~vk~~~g~~~~ 242 (381)
+..+ +.+.+|-.+.
T Consensus 96 g~t~-~~~~sGl~~~ 109 (209)
T 3uf8_A 96 GSTV-VTTESGLKYE 109 (209)
T ss_dssp CCCC-EECTTSCEEE
T ss_pred cccc-cCCCCceEEE
Confidence 6543 4455564443
No 211
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.04 E-value=0.00022 Score=67.56 Aligned_cols=142 Identities=23% Similarity=0.317 Sum_probs=108.8
Q ss_pred EEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhC----CCCCCeEEEE------cCeeccCCCcccccccccCCceeEEE
Q 016849 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVL 147 (381)
Q Consensus 78 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g----ip~~~q~L~~------~g~~L~d~~tl~~~~i~~~~~i~l~~ 147 (381)
.+.|... +.+-++.++++.||.+...+|.++.. .++++--|.. .|+=|++.++|..|++.+++.++...
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3444444 66778999999999999999988764 3566667776 34558889999999999999887764
Q ss_pred eeecceeeEEEeccCcEEEEEecCCchHHHHHHHhhhhhCCCCC-ceEEEecC---------cccCCCCcccccccCCCC
Q 016849 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG---------KQLEDGRTLADYNIQKES 217 (381)
Q Consensus 148 ~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~-~q~L~~~g---------~~L~d~~tL~~y~i~~~~ 217 (381)
..+.+.|...+|....+.+++.+|+.++-+.++++.|+... ..-|.+.. .-|+.++++.+.+.....
T Consensus 84 ---~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~ 160 (371)
T 3ivf_A 84 ---KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHE 160 (371)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTC
T ss_pred ---ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCc
Confidence 44678888999999999999999999999999999998643 45565532 345667778877766656
Q ss_pred EEEEEE
Q 016849 218 TLHLVL 223 (381)
Q Consensus 218 ~i~l~~ 223 (381)
.+.+..
T Consensus 161 ~l~frv 166 (371)
T 3ivf_A 161 TLLLRR 166 (371)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 665543
No 212
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.02 E-value=1.6e-05 Score=58.13 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=68.6
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
..|.+.|...+|+...+.|.|++++.++-+..++++|+++++-.|.|+++.|+=+.++.-.|+.+|+.+.|+..
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999754
No 213
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.93 E-value=3.2e-05 Score=56.61 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=69.7
Q ss_pred ecceeeEEEeccCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEeec
Q 016849 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (381)
Q Consensus 150 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (381)
.++|.|.|-..+++...+.|.++.++.++-++.++++|+.++++.|.|+++.|+-+-.++-.|+.+|+.+.|+....
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 35678888888999999999999999999999999999999999999999999999999999999999999986543
No 214
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.90 E-value=5.9e-05 Score=55.69 Aligned_cols=73 Identities=14% Similarity=0.261 Sum_probs=66.8
Q ss_pred ceeeEEEeccCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEee
Q 016849 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (381)
Q Consensus 152 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (381)
.+.|.|+. .|....+.+..++....|....+++.|++++..+|.|.|..+.++.|.++.++.++++|.+++..
T Consensus 21 ~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 21 LFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp CEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred eEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 36667773 68889999999999999999999999999999999999999999999999999999999988754
No 215
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.89 E-value=1.6e-06 Score=80.44 Aligned_cols=81 Identities=14% Similarity=0.320 Sum_probs=1.1
Q ss_pred ecCCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEeeecc
Q 016849 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (381)
Q Consensus 73 ~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~~~~ 152 (381)
+...++|.|+. +|+.+.+.|.+++++..|++..+++.|++++.++|.|.|+.+.++.|.+++++.+|++|+++....++
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 44567888876 67889999999999999999999999999999999999999999999999999999999999887766
Q ss_pred ee
Q 016849 153 MQ 154 (381)
Q Consensus 153 ~~ 154 (381)
|.
T Consensus 97 ~~ 98 (360)
T 3ix6_A 97 MR 98 (360)
T ss_dssp CH
T ss_pred HH
Confidence 54
No 216
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.80 E-value=3.1e-05 Score=60.99 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=59.6
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCC-------------------------------------CeEEE
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 348 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~-------------------------------------~q~L~ 348 (381)
.+.|+.++|...++.|+.+.||.+++..||.+.||+.. .++|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58899999999999999999999999999999999855 33332
Q ss_pred E--CCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 349 F--AGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 349 ~--~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
. ++.-|+++.||.++||.++++|.|..+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 235677889999999999999887654
No 217
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.66 E-value=0.00011 Score=52.92 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=54.2
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCC-----CeEEEECCEEcCCCCcccccCCCCCCEEEE
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 373 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~-----~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 373 (381)
..|+.+.+.++...||.+|+..+.+.++++.. ..+..-.|..|.+++.|++|+|.+|+.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 58999999999999999999999999987652 334555788999999999999999999875
No 218
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.55 E-value=0.00013 Score=57.38 Aligned_cols=69 Identities=28% Similarity=0.393 Sum_probs=58.0
Q ss_pred EEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCc-------------------------------------cceEEe
Q 016849 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLIF 45 (381)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~-------------------------------------~q~l~~ 45 (381)
+.|++++|+..++.|+.|.||.+++..|+++.||+.. +|+|..
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~ 93 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence 6789999999999999999999999999999999866 344432
Q ss_pred --cCeeccCCCccccccccccccceeeE
Q 016849 46 --AGKQLEDGRTLADYNIQKESTLHLVL 71 (381)
Q Consensus 46 --~g~~L~d~~tl~~~~i~~~s~i~l~~ 71 (381)
.+.-|++++||.+++|..++++.|.-
T Consensus 94 dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 94 DDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp SSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred cCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 23567888999999999999977654
No 219
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.48 E-value=1.6e-05 Score=76.08 Aligned_cols=81 Identities=11% Similarity=0.323 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEeeeccee
Q 016849 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~~~~~~ 154 (381)
+.+.|.|+. +|..+.+.|.+++++..|+...+++.|++++.++|.|.|+.+.++.|.+++++.+|++|+++....++..
T Consensus 29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n 107 (389)
T 4da1_A 29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN 107 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence 456777776 7788899999999999999999999999999999999999999999999999999999999987665544
Q ss_pred eE
Q 016849 155 IF 156 (381)
Q Consensus 155 v~ 156 (381)
+.
T Consensus 108 ~~ 109 (389)
T 4da1_A 108 LY 109 (389)
T ss_dssp --
T ss_pred cc
Confidence 43
No 220
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.23 E-value=0.0013 Score=48.00 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=60.2
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE--CCEEcC---CCCcccccCCCCCCEEEEEE
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~--~g~~L~---d~~~L~~~~i~~~~~i~l~~ 375 (381)
..|.||.++|+...-.+..++||.+|..-|.. .+.++..+.|.. -.+.+. .++||.++|+.+.++|.|--
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 56889999999999999999999999999998 678888889884 467783 46799999999999998754
No 221
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.02 E-value=0.0038 Score=45.55 Aligned_cols=70 Identities=19% Similarity=0.350 Sum_probs=59.5
Q ss_pred CeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE--EcCeec---cCCCcccccccccCCceeEE
Q 016849 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 76 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L---~d~~tl~~~~i~~~~~i~l~ 146 (381)
...|.|+..+|+.+.-.+..++||.+|...|.. .+.++....|. |-.+.+ +.+.||.+.|+.+++++.+.
T Consensus 7 ~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 7 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 356888999999999999999999999999987 67777888887 557888 45789999999988888775
No 222
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.00 E-value=0.0019 Score=46.54 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=56.5
Q ss_pred eEEEEEc--cCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCC-----CeEEEEcCeeccCCCcccccccccCCceeE
Q 016849 77 MQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (381)
Q Consensus 77 ~~i~v~~--~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-----~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l 145 (381)
+.|++.. ..++.+.+.++...||..|++.+.+.++++.. ..++.-.|..|.++.+|++|+|.+|+.+.+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4566654 57899999999999999999999999887652 234445678899999999999999998764
No 223
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.50 E-value=0.018 Score=45.17 Aligned_cols=71 Identities=18% Similarity=0.306 Sum_probs=60.6
Q ss_pred CCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE--EcCeec--c-CCCcccccccccCCceeEE
Q 016849 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--E-DGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L--~-d~~tl~~~~i~~~~~i~l~ 146 (381)
....|.|+..+|..+.-.+..++||.+|...|... +.++....|+ |-.+.| + .+.||.+.|+.+.+++.+.
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 45788999999999999999999999999999887 7777777787 668888 3 4789999999988877765
No 224
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.47 E-value=0.015 Score=44.59 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=62.1
Q ss_pred CeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE--EcCeecc---CCCcccccccccCCceeEEEe
Q 016849 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 148 (381)
Q Consensus 76 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~---d~~tl~~~~i~~~~~i~l~~~ 148 (381)
...|.|+..+|+.+.-.+..++||.++.+.|....+.+.....|. |-.+.+. .++||.+.|+.+.+++.+...
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 467889999999999999999999999999999888777777776 5677785 368999999999888877653
No 225
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.43 E-value=0.013 Score=44.89 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=62.0
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE--CCEEcC---CCCcccccCCCCCCEEEEEEe
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~--~g~~L~---d~~~L~~~~i~~~~~i~l~~~ 376 (381)
...|.||.++|..+.-.+..++||.+|.+-|....+.+.....|.- -.+.+. .++||.++|+.+.++|.+...
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 3578899999999999999999999999999999888877888874 466675 367999999999988887653
No 226
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.29 E-value=0.0098 Score=46.74 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=60.3
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE--CCEEc--C-CCCcccccCCCCCCEEEEEE
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL--E-DGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~--~g~~L--~-d~~~L~~~~i~~~~~i~l~~ 375 (381)
...|.||.++|..+.-.+..++||.+|..-|... +.++....|+- -.+.| . .+.||.++|+.+..+|.|..
T Consensus 43 ~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 43 KAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 4578899999999999999999999999999887 88888888874 57778 3 36899999999988887754
No 227
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.18 E-value=0.041 Score=38.40 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=52.3
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.|+|.++...+ ...+++....|+++|.+.+ ++++....+..||..+..+. -+++|+.|.+.....||
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 48888876542 3567888889999998876 57778778888999987665 46679999998777666
No 228
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.69 E-value=0.017 Score=43.99 Aligned_cols=64 Identities=34% Similarity=0.395 Sum_probs=44.2
Q ss_pred CCcEEEEEeecCccHHHHHHHHhhh--cCCCCccc------eEEe----cCeeccCC-------------Cccccccccc
Q 016849 9 TGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQ------RLIF----AGKQLEDG-------------RTLADYNIQK 63 (381)
Q Consensus 9 ~g~~~~~~v~~~dtv~~~K~~i~~~--~~ip~~~q------~l~~----~g~~L~d~-------------~tl~~~~i~~ 63 (381)
++..+...|-..|||..+|+||-+. -|.|.++. .|-| .|+.|.|. +||+.|+|.+
T Consensus 22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 4567888888999999999999875 57777653 3444 25666651 5899999999
Q ss_pred cccceeeEe
Q 016849 64 ESTLHLVLR 72 (381)
Q Consensus 64 ~s~i~l~~~ 72 (381)
++++-++.+
T Consensus 102 gatl~l~~~ 110 (111)
T 4e71_A 102 GATLILSKV 110 (111)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999987653
No 229
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=95.64 E-value=0.1 Score=45.59 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=53.7
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCCCCC-CeEEEE-C----CEEcCC-CCcccccCCCCCCEEEEEEecCCC
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~-~q~L~~-~----g~~L~d-~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.++..++..+||.+|+++++..++|+++ +.||-. . ...|.| +.+|.++++.++..|-+-.|..-|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3556789999999999999999999997 688865 2 446765 579999999999999998885544
No 230
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.63 E-value=0.067 Score=40.63 Aligned_cols=63 Identities=38% Similarity=0.494 Sum_probs=47.2
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHh--CCC------CCCeEEEE----CCEEcCCC-------------CcccccCCCCC
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGKQLEDG-------------RTLADYNIQKE 368 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~--gi~------~~~q~L~~----~g~~L~d~-------------~~L~~~~i~~~ 368 (381)
+..+.+.|-..+||.++|++|-+.. |.| ++.+.|-+ .|+.|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4567888889999999999998775 454 34556766 35667652 48999999999
Q ss_pred CEEEEEEe
Q 016849 369 STLHLVLR 376 (381)
Q Consensus 369 ~~i~l~~~ 376 (381)
+++-++.+
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99998765
No 231
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.32 E-value=0.029 Score=40.02 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=54.1
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEEC---CEEcCCCCcccccCCCC
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK 367 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~---g~~L~d~~~L~~~~i~~ 367 (381)
.+.|+....+...+.|+|..+.++|.-.|+++-.++|+.-.|... +.+|+=+++|.||||++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 444556677888999999999999999999999999999999874 66788899999999986
No 232
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.27 E-value=0.054 Score=41.41 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=58.0
Q ss_pred CeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE--EcCeecc--CCCcccccccccCCceeEEE
Q 016849 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 147 (381)
Q Consensus 76 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~--d~~tl~~~~i~~~~~i~l~~ 147 (381)
...|.|+..+|+.+.-.+..++||.+|...|... +..+....|+ |-.+.|. .+.||.+.|+.+..++.+..
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4678889999999999999999999999999865 5556666776 5677885 47899999999888776653
No 233
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.14 E-value=0.067 Score=40.87 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=58.0
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE--CCEEcC--CCCcccccCCCCCCEEEEEE
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE--DGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~--~g~~L~--d~~~L~~~~i~~~~~i~l~~ 375 (381)
..|.||.++|+.+.-.+..++||.+|..-|... +..+....|.- -.+.|. .+.||.++|+.+.++|.|..
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 568889999999999999999999999999965 55667777764 466775 46799999999999988754
No 234
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.02 E-value=0.12 Score=40.00 Aligned_cols=67 Identities=27% Similarity=0.434 Sum_probs=50.1
Q ss_pred EcCCCcEEEEEeecCccHHHHHHHHhhh--cCCCCc------cceEEe----cCee-ccC---------C----Cccccc
Q 016849 6 KTLTGKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIF----AGKQ-LED---------G----RTLADY 59 (381)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~~K~~i~~~--~~ip~~------~q~l~~----~g~~-L~d---------~----~tl~~~ 59 (381)
...++..+...|-..|||..+|+||-+. -|.|.+ ...|-| .|+. |.| + +||+.|
T Consensus 12 ~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY 91 (127)
T 3h6n_A 12 QGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHY 91 (127)
T ss_dssp ETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTT
T ss_pred cCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEecccccc
Confidence 3445677888999999999999999875 567665 345555 2333 554 1 689999
Q ss_pred cccccccceeeEe
Q 016849 60 NIQKESTLHLVLR 72 (381)
Q Consensus 60 ~i~~~s~i~l~~~ 72 (381)
+|.+++++-++.+
T Consensus 92 ~V~dgatv~l~~~ 104 (127)
T 3h6n_A 92 KIPEGASLAMSLI 104 (127)
T ss_dssp TCCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 9999999988765
No 235
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.82 E-value=0.11 Score=44.88 Aligned_cols=65 Identities=23% Similarity=0.343 Sum_probs=53.3
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCCCCC-CeEEEE---C--CEEcCC-CCcccccCCCCCCEEEEEEecCCC
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF---A--GKQLED-GRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~-~q~L~~---~--g~~L~d-~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
..++.++..+||.+|++.++..++||++ +.||-. . ...|+| ++||.++++.+|..|-+-+|...|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4667889999999999999999999997 688753 2 335666 469999999999999998887665
No 236
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.81 E-value=0.062 Score=42.29 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=55.6
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHh-CCCCCCeEEEE--CCEEcCC-CCcccccCCCCCCEE
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIF--AGKQLED-GRTLADYNIQKESTL 371 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gi~~~~q~L~~--~g~~L~d-~~~L~~~~i~~~~~i 371 (381)
...|.||.++|..+.-.+..++||.+|..-|.... +.+...+.|.. -.+.++| +.||.++|+.+.++|
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 46788999999999999999999999999999863 45567777764 5778875 679999999885444
No 237
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.73 E-value=0.093 Score=41.33 Aligned_cols=64 Identities=33% Similarity=0.521 Sum_probs=47.4
Q ss_pred CcEEEEEeecCccHHHHHHHHhhh--cCCCCcc------ceEEe----cCee-ccCC-------------Cccccccccc
Q 016849 10 GKTITLEVESSDTIDNVKAKIQDK--EGIPPDQ------QRLIF----AGKQ-LEDG-------------RTLADYNIQK 63 (381)
Q Consensus 10 g~~~~~~v~~~dtv~~~K~~i~~~--~~ip~~~------q~l~~----~g~~-L~d~-------------~tl~~~~i~~ 63 (381)
...+.+.|-..|||..+|+||-+. -|+|.++ --|-+ .|+. |.|. .||+.|+|.+
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 357889999999999999999886 4577655 12333 2433 5542 5999999999
Q ss_pred cccceeeEee
Q 016849 64 ESTLHLVLRL 73 (381)
Q Consensus 64 ~s~i~l~~~~ 73 (381)
++++-++.+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999987754
No 238
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.31 E-value=0.079 Score=41.68 Aligned_cols=67 Identities=21% Similarity=0.347 Sum_probs=54.4
Q ss_pred CeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHh-CCCCCCeEEE--EcCeeccC-CCcccccccccCCc
Q 016849 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKEST 142 (381)
Q Consensus 76 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~-gip~~~q~L~--~~g~~L~d-~~tl~~~~i~~~~~ 142 (381)
...|.|+..+|..+.-.++.++||.+|.+.|.... +.+.....|+ |-.+.++| +.||.+.|+.+...
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 46788999999999999999999999999998863 3555666776 56788865 68999999987443
No 239
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.04 E-value=0.099 Score=36.86 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=48.9
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|+|.|+........++++++.||++|-+ ..|+|++.-...-||+.+..+. +.+|+.|.+.--.-||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 6777775544456689999999999754 5799999998788999887655 2348999887544444
No 240
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=94.02 E-value=0.13 Score=37.40 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=47.2
Q ss_pred cCeeeEEEeeCCcEEEEEeeCc-chHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 303 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~-~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
..|+|.+ ||+ .+++... .||.+|.+.+ ++++....+..||..+..+ ...+.-+++|+.|.+.....||
T Consensus 19 ~~M~I~v---NGe--~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 19 GRHMLQL---NGK--DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ---CEEE---TTE--EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred cceEEEE---CCE--EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 4566744 465 4455676 8999998876 6777777888899988643 3445567889999999877666
No 241
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.99 E-value=0.42 Score=37.03 Aligned_cols=64 Identities=27% Similarity=0.388 Sum_probs=49.0
Q ss_pred CCcEEEEEeeCcchHHHHHHHHHhHh--CCCC------CCeEEEE----CCEE-cCCC-------------CcccccCCC
Q 016849 313 TGKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGKQ-LEDG-------------RTLADYNIQ 366 (381)
Q Consensus 313 ~g~~~~~~v~~~~tV~~lK~~i~~~~--gi~~------~~q~L~~----~g~~-L~d~-------------~~L~~~~i~ 366 (381)
++..+.++|-..+||.++|++|-+.. |.|. +.+.|-+ .|+. |.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 45567888889999999999998875 4553 5667776 3443 6642 589999999
Q ss_pred CCCEEEEEEe
Q 016849 367 KESTLHLVLR 376 (381)
Q Consensus 367 ~~~~i~l~~~ 376 (381)
+|+++-++.+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999999865
No 242
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=93.88 E-value=0.18 Score=35.44 Aligned_cols=59 Identities=10% Similarity=0.290 Sum_probs=45.6
Q ss_pred eeeEEeccCcEEEEEEecCCcHHHHHHhhhhccCCCcccceeeecCccccCCccccccccccCceeeEE
Q 016849 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (381)
Q Consensus 230 ~i~vk~~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~ 298 (381)
+|.++-.+.....+++.++.||++| .+++++|+..-....||+.+..+. +.+||++.++
T Consensus 2 ~v~Vkl~g~~~~~~ev~~g~Tv~dL----L~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 2 NVTVEVVGEETSEVAVDDDGTYADL----VRAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp EEEEECSSSSEEEEECSTTCSHHHH----HHTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred EEEEEEeCccceeEEcCCCCcHHHH----HHHcCCCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 4556655555667899999999999 677899998887779999987766 2348888775
No 243
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.67 E-value=0.47 Score=35.21 Aligned_cols=73 Identities=14% Similarity=0.322 Sum_probs=50.3
Q ss_pred cCeeeEEEee------CC-cEEEEEeeCcchHHHHHHHHHhHhC-C----------CCCCeEEEECCEEcCCCCcccccC
Q 016849 303 GGMQIFVKTL------TG-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 364 (381)
Q Consensus 303 ~~m~I~v~~~------~g-~~~~~~v~~~~tV~~lK~~i~~~~g-i----------~~~~q~L~~~g~~L~d~~~L~~~~ 364 (381)
.+|.|.|+.. .| ....+++.+..||.+|.+.+..... + ......+.-||+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 4677888764 24 4677888888999999999987741 1 1244567778887753 556
Q ss_pred CCCCCEEEEEEecCCC
Q 016849 365 IQKESTLHLVLRLRGG 380 (381)
Q Consensus 365 i~~~~~i~l~~~~~GG 380 (381)
+++|+.|.+.-...||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 7789999998777776
No 244
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.55 E-value=0.17 Score=36.07 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=53.4
Q ss_pred eEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEE---cCeeccCCCccccccccc
Q 016849 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 139 (381)
Q Consensus 77 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~g~~L~d~~tl~~~~i~~ 139 (381)
+++.|+....+...+.|+|..++.++--.|.++..+.|+.-.|.- ++.+|+-+++|.+|||.+
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 445555555667778999999999999999999999999888873 568899999999999986
No 245
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.52 E-value=0.19 Score=38.59 Aligned_cols=63 Identities=30% Similarity=0.496 Sum_probs=46.5
Q ss_pred CcEEEEEeecCccHHHHHHHHhhh--cCCCCcc------ceEEe-c---Ce-eccC---------C----Cccccccccc
Q 016849 10 GKTITLEVESSDTIDNVKAKIQDK--EGIPPDQ------QRLIF-A---GK-QLED---------G----RTLADYNIQK 63 (381)
Q Consensus 10 g~~~~~~v~~~dtv~~~K~~i~~~--~~ip~~~------q~l~~-~---g~-~L~d---------~----~tl~~~~i~~ 63 (381)
+..+...|-..|||..+|+||-+. -|.|.++ ..|-| . |+ .|.| + +||+.|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 445778888999999999999875 5777764 34444 2 23 2544 1 6899999999
Q ss_pred cccceeeEe
Q 016849 64 ESTLHLVLR 72 (381)
Q Consensus 64 ~s~i~l~~~ 72 (381)
++++-++.+
T Consensus 106 gatl~l~~~ 114 (117)
T 4e74_A 106 GSVVALVSK 114 (117)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999988764
No 246
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.50 E-value=0.3 Score=37.42 Aligned_cols=64 Identities=30% Similarity=0.453 Sum_probs=48.0
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHh--CCCC------CCeEEEE----CCE-EcCCC-------------CcccccCCCC
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQK 367 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~--gi~~------~~q~L~~----~g~-~L~d~-------------~~L~~~~i~~ 367 (381)
...+.++|-..+||.++|++|-+.. |.|. +.+.|-+ .|+ .|.|. .||++|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 4457788889999999999998775 5554 4556665 234 35542 5899999999
Q ss_pred CCEEEEEEec
Q 016849 368 ESTLHLVLRL 377 (381)
Q Consensus 368 ~~~i~l~~~~ 377 (381)
|+++-++.|.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998774
No 247
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=93.46 E-value=0.25 Score=35.10 Aligned_cols=59 Identities=19% Similarity=0.378 Sum_probs=52.9
Q ss_pred EEEEEecCCcHHHHHHhhhhccCCCcccceeeecCccccCCccccccccccCceeeEEE
Q 016849 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (381)
Q Consensus 241 ~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~~ 299 (381)
++-.++-+.++..||..++.|.++..+.+.|..++..|+++++|.+.+++....+.+.+
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinv 63 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSV 63 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEE
Confidence 45667788899999999999999999999999888889999999999999988887754
No 248
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=93.46 E-value=0.29 Score=34.28 Aligned_cols=58 Identities=14% Similarity=0.370 Sum_probs=41.9
Q ss_pred EEEeeCcchHHHHHHHHHhHhCCCC--CCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 318 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 318 ~~~v~~~~tV~~lK~~i~~~~gi~~--~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.+++ ...||.+|.+.+....++.. ....+.-||+.+.+ .+.-+++|+.|.+.-+..||
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 3566 67899999999987544322 44566678887543 24457789999999888887
No 249
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.04 E-value=0.42 Score=37.60 Aligned_cols=63 Identities=32% Similarity=0.488 Sum_probs=48.0
Q ss_pred cEEEEEeeCcchHHHHHHHHHhHh--CCCC------CCeEEEE----CCE-EcCCC-------------CcccccCCCCC
Q 016849 315 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 368 (381)
Q Consensus 315 ~~~~~~v~~~~tV~~lK~~i~~~~--gi~~------~~q~L~~----~g~-~L~d~-------------~~L~~~~i~~~ 368 (381)
..+.+.|-..+||.++|++|-+.. |.|. ++.-|-+ .|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 568889999999999999999876 5543 3455555 354 36653 38999999999
Q ss_pred CEEEEEEec
Q 016849 369 STLHLVLRL 377 (381)
Q Consensus 369 ~~i~l~~~~ 377 (381)
+++.|+.+.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999998764
No 250
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=92.75 E-value=0.62 Score=33.07 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=53.2
Q ss_pred EEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEec
Q 016849 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 377 (381)
Q Consensus 317 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 377 (381)
+.-.++-+.++..||..++.+.|++.+.-.+...+..|+++++|.|-+++-.-++.+.+-.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3445677889999999999999999999999888888999999999999988888887653
No 251
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=92.58 E-value=0.24 Score=35.58 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=40.3
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECC
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 351 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g 351 (381)
+|.|.|.+. -++.+.|.++.+..+|.++|+++.++|++...|.|..
T Consensus 5 ~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 5 AYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp CEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred cEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 466666655 5899999999999999999999999999999999953
No 252
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=91.25 E-value=1 Score=32.62 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=46.3
Q ss_pred cEEEEEeeCcchHHHHHHHHHhHhC-C-----C-----CCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 315 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 315 ~~~~~~v~~~~tV~~lK~~i~~~~g-i-----~-----~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
....+++....||.+|.+.+...+. + . .....+.-||+.... +.-+++|+.|.+.-+..||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 5677888888999999999988762 1 0 123567779998875 3456779999999888887
No 253
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=91.18 E-value=0.68 Score=40.30 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=52.2
Q ss_pred EEEEEecCCchHHHHHHHhhhhhCCCCC-ceEEEe-cC----cccCC-CCcccccccCCCCEEEEEEeeccc
Q 016849 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-AG----KQLED-GRTLADYNIQKESTLHLVLRLRGG 228 (381)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~ip~~-~q~L~~-~g----~~L~d-~~tL~~y~i~~~~~i~l~~~~~~~ 228 (381)
.+++.++..+|+.+|++.++..+++|++ ..||-. .+ ..|.| +.++.++++..+..|.+-.+...|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567789999999999999999999997 577763 32 45655 699999999999999888775543
No 254
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=91.15 E-value=0.33 Score=33.17 Aligned_cols=62 Identities=11% Similarity=0.219 Sum_probs=44.6
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.||+.+ ++....||.+|.+.+ ++++....+..||+.+..+ ...+.-+++|+.|.+.-...||
T Consensus 5 vNg~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 5 FNDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp ESSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred ECCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 356544 556788999998876 5777778888899987632 1223456779999998777665
No 255
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=91.13 E-value=0.46 Score=32.17 Aligned_cols=61 Identities=15% Similarity=0.331 Sum_probs=43.9
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.||+.+. + +..||.+|.+.+ ++++....+..||+.+..+ .-.+.-+++|+.|.+.....||
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 4676554 4 678999998877 5677777788899988643 2334456789999999777666
No 256
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=91.09 E-value=0.3 Score=34.23 Aligned_cols=62 Identities=10% Similarity=0.216 Sum_probs=46.1
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
.||+.+. + +..||++|-+. .++++...-+..||..+..+ ..++.-+++|+.|.+.....||.
T Consensus 5 vNG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 5 INGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp ETTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCCC
T ss_pred ECCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCCc
Confidence 3566554 4 67899998764 58888888889999988633 34455677799999998877773
No 257
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=91.02 E-value=0.51 Score=40.70 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=51.5
Q ss_pred EEEEEecCCchHHHHHHHhhhhhCCCCC-ceEEE--ecC---cccCC-CCcccccccCCCCEEEEEEeecc
Q 016849 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--FAG---KQLED-GRTLADYNIQKESTLHLVLRLRG 227 (381)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~ip~~-~q~L~--~~g---~~L~d-~~tL~~y~i~~~~~i~l~~~~~~ 227 (381)
..++.++..+|+.+|++.++..+++|++ ..||- +.+ ..|++ +.||.++++.++..|.+-.+...
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~d 211 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNED 211 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 3567789999999999999999999987 57765 322 45655 57999999999999988877543
No 258
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=90.70 E-value=0.75 Score=32.95 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=40.7
Q ss_pred CCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCe
Q 016849 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~ 124 (381)
..+.|.|... -++.+.|++..+..+|.++|.++.++|++...|.|.-.
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 3466677655 69999999999999999999999999998888888653
No 259
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=90.50 E-value=2.2 Score=29.33 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=45.6
Q ss_pred ceeeEEEeccCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEee
Q 016849 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (381)
Q Consensus 152 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (381)
.|.|+|.... ....+++....||.+|.+.+ ++++....+..+|.....+. -+++||.|.++..-
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVI 67 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECT
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEecc
Confidence 4666665432 23456777778999998876 56677777778998887654 67889999887543
No 260
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=90.08 E-value=0.53 Score=36.37 Aligned_cols=60 Identities=33% Similarity=0.486 Sum_probs=42.4
Q ss_pred cEEEEEeecCccHHHHHHHHhhh----cCCCCcc----ceEEe----cCeeccC----------C----Ccccccccccc
Q 016849 11 KTITLEVESSDTIDNVKAKIQDK----EGIPPDQ----QRLIF----AGKQLED----------G----RTLADYNIQKE 64 (381)
Q Consensus 11 ~~~~~~v~~~dtv~~~K~~i~~~----~~ip~~~----q~l~~----~g~~L~d----------~----~tl~~~~i~~~ 64 (381)
..+...|-..|||..+|+||-+. .|.|.++ ..|-| .|..|.| + .||+.|+|.++
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46888899999999999998664 4887763 22333 1222322 2 58889999999
Q ss_pred ccceee
Q 016849 65 STLHLV 70 (381)
Q Consensus 65 s~i~l~ 70 (381)
+++-++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 998764
No 261
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=89.94 E-value=0.7 Score=32.72 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=42.4
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhC-----CCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~g-----i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
...++ .+..||.+|.+.+..... ++.....+..||+.... +.-+++|+.|.+.-+..||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 44555 567899999999986531 23344567789998764 4456779999998887776
No 262
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=89.85 E-value=0.34 Score=34.43 Aligned_cols=63 Identities=14% Similarity=0.281 Sum_probs=46.8
Q ss_pred eCCcEEEEEee--CcchHHHHHHHHHhHhCCC-CCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 312 LTGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 312 ~~g~~~~~~v~--~~~tV~~lK~~i~~~~gi~-~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
.||+.+ ++. ...||++|-+. .|++ +...-+..||..+..+ ..++.-+++|+.|.+....-||.
T Consensus 5 vNGe~~--e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 5 VNGKPS--TVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp ETTEEE--ECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSC
T ss_pred ECCEEE--EcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCC
Confidence 356644 455 67899999775 4777 7777888999988654 45556677899999987777773
No 263
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=89.42 E-value=2.8 Score=32.32 Aligned_cols=61 Identities=31% Similarity=0.415 Sum_probs=43.3
Q ss_pred cEEEEEeeCcchHHHHHHHHHhHh----CCCC----CCeEEEE--C--CEEcCCC--------------CcccccCCCCC
Q 016849 315 KTITLEVESSDTIDNVKAKIQDKE----GIPP----DQQRLIF--A--GKQLEDG--------------RTLADYNIQKE 368 (381)
Q Consensus 315 ~~~~~~v~~~~tV~~lK~~i~~~~----gi~~----~~q~L~~--~--g~~L~d~--------------~~L~~~~i~~~ 368 (381)
..+.+.|-..+||.++|++|-+.. |.|. +.+.|-+ + |..|.|. .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 467888889999999999986653 6654 3444544 1 2334331 47889999999
Q ss_pred CEEEEEE
Q 016849 369 STLHLVL 375 (381)
Q Consensus 369 ~~i~l~~ 375 (381)
+++-+..
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998764
No 264
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=89.19 E-value=2.1 Score=31.12 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=44.1
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhC-C-----C-------CCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEG-I-----P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~g-i-----~-------~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
|....+++ +..||.+|.+.+...+. + . .....+.-||+......- .+.-+++|+.|.+.-+..||
T Consensus 16 g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 16 GGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp TTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTTC
T ss_pred CCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCCC
Confidence 43334664 56799999999998762 0 1 113566778888764322 24457889999999888887
No 265
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=88.73 E-value=0.74 Score=32.24 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=42.8
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCCCCCCe--EEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q--~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
...+++....||.+|.+.+..... ..... .+..||+....+ .-+++|+.|.+.-...||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 456677788899999999887641 01223 677899988754 456679999998777666
No 266
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=87.65 E-value=2.6 Score=38.25 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=56.5
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCC-CeEEEE--CCE--EcCCCCcccccCCCCCCEEEEEEe
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~-~q~L~~--~g~--~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
..++.+.|..++| ++.+.+++++|+.||-+.|++..|+... .+-|.| +|. -|+.++++.+.++..+....+.+|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 4557788888998 7889999999999999999999998753 344555 444 377888999987766666555554
No 267
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=87.60 E-value=2.3 Score=38.12 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=54.6
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCC-eEEEE---CCE--EcCCCCcccccCCCCCCEEEEEEe
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~L~~---~g~--~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
++.+.|..++| +..+.+++++|+.||-+.|++..|+.... +-|.+ +|. -|+.++++.+.++..+....+.+|
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 35677888888 68899999999999999999999986544 44554 343 467788888887766666666555
No 268
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=86.97 E-value=4.5 Score=29.72 Aligned_cols=69 Identities=12% Similarity=0.269 Sum_probs=46.7
Q ss_pred cceeeEEEecc------C-cEEEEEecCCchHHHHHHHhhhhhC-C----------CCCceEEEecCcccCCCCcccccc
Q 016849 151 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 212 (381)
Q Consensus 151 ~~~~v~v~~~~------g-~~~~i~v~~~~tV~~lK~~i~~~~~-i----------p~~~q~L~~~g~~L~d~~tL~~y~ 212 (381)
+.|.|+|+.+. | ....+++....||.+|.+.+..... + ......+..||+.... ++-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 45677777643 3 4567888778999999999876641 1 1133456677776652 667
Q ss_pred cCCCCEEEEEEe
Q 016849 213 IQKESTLHLVLR 224 (381)
Q Consensus 213 i~~~~~i~l~~~ 224 (381)
+++||+|.++..
T Consensus 83 L~dGDeV~i~pp 94 (98)
T 1vjk_A 83 LKDGDVVGVFPP 94 (98)
T ss_dssp CCTTCEEEEESC
T ss_pred CCCCCEEEEECC
Confidence 899999988754
No 269
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=86.70 E-value=0.63 Score=36.60 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=32.9
Q ss_pred cEEEEEeecCccHHHHHHHHhhhcCCCCccceEEec
Q 016849 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (381)
Q Consensus 11 ~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~ 46 (381)
...++.|..+.|+.++|+.|.+..|+|+++|+|+.-
T Consensus 56 ~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 56 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp SCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred CcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 345789999999999999999999999999999985
No 270
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=85.54 E-value=0.65 Score=36.49 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=30.6
Q ss_pred EEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE
Q 016849 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349 (381)
Q Consensus 317 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~ 349 (381)
.++.|..++|+.+||..|++..|+|++.|||-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467899999999999999999999999999876
No 271
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=83.43 E-value=2.1 Score=42.14 Aligned_cols=63 Identities=33% Similarity=0.541 Sum_probs=46.5
Q ss_pred cEEEEEeecCccHHHHHHHHhhh--cCCCCccc------eEEe----cCe-eccCC-------------Ccccccccccc
Q 016849 11 KTITLEVESSDTIDNVKAKIQDK--EGIPPDQQ------RLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (381)
Q Consensus 11 ~~~~~~v~~~dtv~~~K~~i~~~--~~ip~~~q------~l~~----~g~-~L~d~-------------~tl~~~~i~~~ 64 (381)
..+.+.|-..|||..+|+||-+. -|.|.+++ .|-| .|+ .|.|. .||++|+|.++
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 45778888999999999999854 57777654 3444 233 25441 59999999999
Q ss_pred ccceeeEee
Q 016849 65 STLHLVLRL 73 (381)
Q Consensus 65 s~i~l~~~~ 73 (381)
+++-|+.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887753
No 272
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=82.66 E-value=4.1 Score=29.22 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=42.3
Q ss_pred EEEeeCcchHHHHHHHHHhHhC------C-----CCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 318 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 318 ~~~v~~~~tV~~lK~~i~~~~g------i-----~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.+++....||.+|.+.+..... + ......+..||+...... -.+.-+++|+.|.+.-...||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 3456667899999999987741 1 113456777888775221 134457789999998777776
No 273
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=82.63 E-value=4.1 Score=29.37 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=42.9
Q ss_pred cceeeEEEeccCcEEEEEecCC-chHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEee
Q 016849 151 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (381)
Q Consensus 151 ~~~~v~v~~~~g~~~~i~v~~~-~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (381)
..|.|++ +|+. ++++.. .||.+|.+.+ ++++....+..||+.+..+ ...+.-+++||.|.++..-
T Consensus 19 ~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 19 GRHMLQL---NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp ---CEEE---TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEEC
T ss_pred cceEEEE---CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEccc
Confidence 3465555 4664 445666 8999998876 5667666777888876432 3445668999999888543
No 274
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=82.17 E-value=0.4 Score=33.86 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=41.4
Q ss_pred EEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 318 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 318 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.+++.+..||.+|.+.+ ++++....+..||+....+ .-+++|+.|.+.-...||
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 34567788999998776 4677777788899988765 456779999988777666
No 275
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=81.96 E-value=5.5 Score=27.48 Aligned_cols=57 Identities=12% Similarity=0.338 Sum_probs=37.7
Q ss_pred EEEecCCchHHHHHHHhhhhhCCCC--CceEEEecCcccCCCCcccccccCCCCEEEEEEeecc
Q 016849 166 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (381)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~ip~--~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~ 227 (381)
.+++ ...||.+|.+.+..+.++.. ..-.+.-||+...+ .+.-+++||+|.++..-++
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCC
Confidence 3555 56899999999986543322 33455667776442 3566889999988865443
No 276
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=81.83 E-value=9.2 Score=29.05 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=46.0
Q ss_pred CeeeEEEee------CC--cEEEEEeeC---cchHHHHHHHHHhHh-CCC----------CCCeEEEECCEEcCCCCcc-
Q 016849 304 GMQIFVKTL------TG--KTITLEVES---SDTIDNVKAKIQDKE-GIP----------PDQQRLIFAGKQLEDGRTL- 360 (381)
Q Consensus 304 ~m~I~v~~~------~g--~~~~~~v~~---~~tV~~lK~~i~~~~-gi~----------~~~q~L~~~g~~L~d~~~L- 360 (381)
.|+|.|+.+ .| +.+.+++.. ..||.+|...+.+.+ +.. .....++-||+-.+ .|
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~---~l~ 87 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE---LLG 87 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH---HHC
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee---ccC
Confidence 366666653 23 356788873 369999999999876 111 11122333443211 11
Q ss_pred -cccCCCCCCEEEEEEecCCCC
Q 016849 361 -ADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 361 -~~~~i~~~~~i~l~~~~~GG~ 381 (381)
.++-+++|+.|.+...+-||+
T Consensus 88 gldt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCCC
Confidence 356788899999988888884
No 277
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=81.51 E-value=7.2 Score=28.58 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=52.4
Q ss_pred eeeEEEeeCC---cEEEEEeeCcchHHHHHHHHHhHhCCCCC--CeEEEEC--CE-EcCCCCcccccCCCCCCEEEEEE
Q 016849 305 MQIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFA--GK-QLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 305 m~I~v~~~~g---~~~~~~v~~~~tV~~lK~~i~~~~gi~~~--~q~L~~~--g~-~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
..|+|...+. ...++.|..+.-|..+..++-+..+++.+ +--|-.. .+ .+.-..||..|||+.++.++++-
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 4577777543 56889999999999999999988877543 2222221 22 46677899999999999998764
No 278
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=81.31 E-value=8.3 Score=28.25 Aligned_cols=71 Identities=24% Similarity=0.268 Sum_probs=55.7
Q ss_pred EEEEEcCCC---cEEEEEeecCccHHHHHHHHhhhcCCCCcc--ceEEecC---eeccCCCccccccccccccceeeEe
Q 016849 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFAG---KQLEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 2 ~i~~~~~~g---~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~--q~l~~~g---~~L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
.|+|..++. ...+++|.-.--|..+..|+.++.+++.+. --|.+-- -.|.-..||..|+|+-.+.+++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 589999775 678899988888999999999999887765 2333322 2356678999999999999988654
No 279
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=80.69 E-value=5.9 Score=39.03 Aligned_cols=64 Identities=30% Similarity=0.486 Sum_probs=46.2
Q ss_pred CcEEEEEeecCccHHHHHHHHhhh--cCCCCcc------ceEEe----cCe-eccC---------C----Cccccccccc
Q 016849 10 GKTITLEVESSDTIDNVKAKIQDK--EGIPPDQ------QRLIF----AGK-QLED---------G----RTLADYNIQK 63 (381)
Q Consensus 10 g~~~~~~v~~~dtv~~~K~~i~~~--~~ip~~~------q~l~~----~g~-~L~d---------~----~tl~~~~i~~ 63 (381)
...+...|-..|||..+|+||-+. -|.|.++ ..|-| .|+ .|.| + .||++|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 356778888999999999999875 4666654 34444 233 2444 1 6899999999
Q ss_pred cccceeeEee
Q 016849 64 ESTLHLVLRL 73 (381)
Q Consensus 64 ~s~i~l~~~~ 73 (381)
++++-++.+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999987753
No 280
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=80.55 E-value=7.9 Score=38.14 Aligned_cols=64 Identities=28% Similarity=0.485 Sum_probs=47.5
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHh--CCC------CCCeEEEE----CCE-EcCCC-------------CcccccCCCC
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK 367 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~--gi~------~~~q~L~~----~g~-~L~d~-------------~~L~~~~i~~ 367 (381)
...+.+.|-..+||.++|++|-+.. |.| ++..-|-+ .|+ .|.|. .||++|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 4567888889999999999998775 454 45566655 244 35542 5899999999
Q ss_pred CCEEEEEEec
Q 016849 368 ESTLHLVLRL 377 (381)
Q Consensus 368 ~~~i~l~~~~ 377 (381)
|+++-|+.+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999998765
No 281
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=80.24 E-value=6.1 Score=39.20 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=55.5
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCC-CeEEEE---CC--EEcCCCCcccccCCCCCCEEEEEEe
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF---AG--KQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~-~q~L~~---~g--~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
++.+.|..++| ++.+.|++++|+.+|-..|+...|+... .+-|.| +| .-|+.++++.+.++..+....+.+|
T Consensus 4 ~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 4 SMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred eEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 46778888888 6889999999999999999999998644 455655 22 2567788888887777766666555
No 282
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=79.30 E-value=5.8 Score=28.74 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=37.2
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCC-eEEEECC
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG 351 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~L~~~g 351 (381)
|+|.+. .+|..+.+.++++.+..+|.+++.+..+++..+ +.+.|..
T Consensus 7 vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 7 VRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp EEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred EEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 444444 568899999999999999999999999998655 7777743
No 283
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=79.01 E-value=14 Score=27.06 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=40.2
Q ss_pred cEEEEEee--CcchHHHHHHHHHhHhC-CCCC------------CeEEEECCEEcCCCCcc--cccCCCCCCEEEEEEec
Q 016849 315 KTITLEVE--SSDTIDNVKAKIQDKEG-IPPD------------QQRLIFAGKQLEDGRTL--ADYNIQKESTLHLVLRL 377 (381)
Q Consensus 315 ~~~~~~v~--~~~tV~~lK~~i~~~~g-i~~~------------~q~L~~~g~~L~d~~~L--~~~~i~~~~~i~l~~~~ 377 (381)
+...+++. +..||.+|.+.+.++.. .... ...+.-||+..+ .+ .++-+++|+.|.+.-+.
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~~~~d~~L~dgDeVa~~Ppv 96 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LEGEKDYILEDGDIISFTSTL 96 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GGTGGGCBCCTTCEEEEEECT
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---ccCCCCcCcCCCCEEEEECCC
Confidence 34566666 67899999999998763 1111 112334555322 11 34567889999998888
Q ss_pred CCC
Q 016849 378 RGG 380 (381)
Q Consensus 378 ~GG 380 (381)
.||
T Consensus 97 ~GG 99 (99)
T 2qjl_A 97 HGG 99 (99)
T ss_dssp TCC
T ss_pred CCC
Confidence 777
No 284
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=78.46 E-value=12 Score=26.70 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=41.2
Q ss_pred cEEEEEecCCchHHHHHHHhhhhhC-C-----CC-----CceEEEecCcccCCCCcccccccCCCCEEEEEEeec
Q 016849 163 KTITLEVESSDTIDNVKAKIQDKEG-I-----PP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (381)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~~~-i-----p~-----~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (381)
....++++...||.+|.+.+..+.. + .. ....+.-||+.... ++-+++||+|.++....
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~ 87 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVS 87 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCC
Confidence 5677888778899999999987652 1 00 12456677776654 56688999998885443
No 285
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=78.38 E-value=7.3 Score=28.18 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=39.6
Q ss_pred eEEe-ccCcEEEEEEecCCcHHHHHHhhhhccCCCccc-ceeeecCccccCCccc
Q 016849 232 FVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTL 284 (381)
Q Consensus 232 ~vk~-~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~-q~L~~~g~~l~d~~tl 284 (381)
.||. .+|..+.+.+++..+.++|.+++.+.++++..+ ..+.|.... .|..++
T Consensus 8 kvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe-GD~iti 61 (89)
T 1vd2_A 8 RVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE-GDPCTV 61 (89)
T ss_dssp EEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS-SCCEEC
T ss_pred EEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC-CCcccc
Confidence 3443 678888999999999999999999999987654 556687665 444444
No 286
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=77.60 E-value=9.3 Score=28.99 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=52.3
Q ss_pred EEEEEeeCcchHHHHHHHHHhH--------hCCCCCCeEEEECCEEcC--CCCcccccCCCCCCEEEEEEecCCC
Q 016849 316 TITLEVESSDTIDNVKAKIQDK--------EGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~--------~gi~~~~q~L~~~g~~L~--d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
.+.+.+.|+++..+|-+.+-.- ..|+-+.-.+..+|++.. .+++|++.|+..-|.|.+..+-+-|
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TPgL~G 113 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTPGLKG 113 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECTTCCC
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCCCcCc
Confidence 4789999999999998776553 356777778999999986 5679999999999999987664433
No 287
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=77.16 E-value=6.6 Score=35.29 Aligned_cols=75 Identities=9% Similarity=0.030 Sum_probs=53.9
Q ss_pred ecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCC-eEEEE---CC--EEcCCCCcccccCCCCCCEEEEEE
Q 016849 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AG--KQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 302 ~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~L~~---~g--~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
...+.+.|..++|....+.|++.+|+.||-..|++..|+.... +-|.+ +| .-|+.++.+.+.......++++.+
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frv 94 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNV 94 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEE
Confidence 3457888899999999999999999999999999999987544 45655 23 246777788776544445555544
Q ss_pred e
Q 016849 376 R 376 (381)
Q Consensus 376 ~ 376 (381)
+
T Consensus 95 k 95 (296)
T 3qij_A 95 K 95 (296)
T ss_dssp S
T ss_pred E
Confidence 4
No 288
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=76.39 E-value=10 Score=37.50 Aligned_cols=63 Identities=32% Similarity=0.488 Sum_probs=46.7
Q ss_pred cEEEEEeeCcchHHHHHHHHHhHh--CCCC------CCeEEEE----CCE-EcCCC-------------CcccccCCCCC
Q 016849 315 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 368 (381)
Q Consensus 315 ~~~~~~v~~~~tV~~lK~~i~~~~--gi~~------~~q~L~~----~g~-~L~d~-------------~~L~~~~i~~~ 368 (381)
..+.+.|-..+||.++|++|-+.. |.|. +...|-+ .|+ .|.|. .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 457788889999999999998654 5553 4555655 244 35543 58999999999
Q ss_pred CEEEEEEec
Q 016849 369 STLHLVLRL 377 (381)
Q Consensus 369 ~~i~l~~~~ 377 (381)
+++-|+.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999987654
No 289
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=76.23 E-value=4.5 Score=30.00 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=50.4
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE-------CCEEcCCCCccccc----CCCCCCEEE
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADY----NIQKESTLH 372 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~-------~g~~L~d~~~L~~~----~i~~~~~i~ 372 (381)
+..|.+-..+|...++.|++++|+.|+-+.+..+.+...+.-+-++ --+.++|...+-+. .+..+..+.
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~ 88 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFV 88 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEE
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEE
Confidence 3456667789999999999999999999999999988766655433 23567777654443 344455554
Q ss_pred E
Q 016849 373 L 373 (381)
Q Consensus 373 l 373 (381)
+
T Consensus 89 F 89 (100)
T 1wgr_A 89 F 89 (100)
T ss_dssp E
T ss_pred E
Confidence 4
No 290
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=73.86 E-value=13 Score=33.16 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=52.3
Q ss_pred eeeEEEeccCcEEEEEecCCchHHHHHHHhhhhhCCCCCc-eEEEe---cC--cccCCCCcccccccCCCCEEEEEEe
Q 016849 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AG--KQLEDGRTLADYNIQKESTLHLVLR 224 (381)
Q Consensus 153 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~-q~L~~---~g--~~L~d~~tL~~y~i~~~~~i~l~~~ 224 (381)
+.+.|...+| ++.+.+++.+|+.++-+.|+++.|+.... .-|.+ +| ..|+.++++.+.++..+....+..+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4566777777 67899999999999999999999987544 44554 23 2477788888887665555555443
No 291
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=73.64 E-value=12 Score=33.72 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=55.0
Q ss_pred ecceeeEEEeccCcEEEEEecCCchHHHHHHHhhhhhCCCCCc-eEEEe--cC--cccCCCCcccccccCCCCEEEEEEe
Q 016849 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--AG--KQLEDGRTLADYNIQKESTLHLVLR 224 (381)
Q Consensus 150 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~-q~L~~--~g--~~L~d~~tL~~y~i~~~~~i~l~~~ 224 (381)
...+.+.|...+| ++.+.+++.+|+.++-+.|+++.|+.... .-|.| .| ..|+.++++.+.+...+....+..+
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 4557778888888 78899999999999999999999987543 44554 33 2478888898887665555544443
No 292
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=71.04 E-value=17 Score=33.68 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=38.4
Q ss_pred cCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeec
Q 016849 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (381)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L 50 (381)
..+-....+.+.+..|+.++++++++..+++++.|.|+|.+..+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~ 361 (396)
T 4eut_A 318 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRL 361 (396)
T ss_dssp TTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEE
T ss_pred eccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCC
Confidence 34566777899999999999999999999999999999998444
No 293
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=70.70 E-value=7.9 Score=28.56 Aligned_cols=59 Identities=12% Similarity=0.287 Sum_probs=41.6
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCCCCC-----------CeEEEECC-EEcCC------CCcccccCCCCCCEEEEE
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLV 374 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~-----------~q~L~~~g-~~L~d------~~~L~~~~i~~~~~i~l~ 374 (381)
...++++++.|.++|-+.+++.-..... ...|+..+ ..|+. +++|.++|+.+|..|+++
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4578999999999999999995433322 23344333 12322 378999999999999886
No 294
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=69.46 E-value=15 Score=36.33 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=54.5
Q ss_pred cceeeEEEeccCcEEEEEecCCchHHHHHHHhhhhhCCCCC-ceEEEecC-----cccCCCCcccccccCCCCEEEEEEe
Q 016849 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVLR 224 (381)
Q Consensus 151 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~-~q~L~~~g-----~~L~d~~tL~~y~i~~~~~i~l~~~ 224 (381)
..+.+.|...+| ++.+.+++.+|+.++-..|+...|++.. ..-|.|.. ..|+.++++.+.++..+....+..+
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 346677878888 6789999999999999999999998754 35555532 3577788888887766665555444
No 295
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=69.40 E-value=3.4 Score=41.88 Aligned_cols=53 Identities=30% Similarity=0.577 Sum_probs=43.6
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEEC-CEEcCCCCcccccC
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYN 364 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~-g~~L~d~~~L~~~~ 364 (381)
..++...+.+.++.|+.+++..|++.+|||++.|.+++. |..+.+......|-
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhhe
Confidence 345667889999999999999999999999999999985 55666666666653
No 296
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=69.17 E-value=4.6 Score=28.00 Aligned_cols=57 Identities=5% Similarity=0.141 Sum_probs=41.2
Q ss_pred ccCcEEEEEEecCCcHHHHHHhhhhccCCCcccceeeecCccccCCccccccccccCceeeEEEE
Q 016849 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (381)
Q Consensus 236 ~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~~~ 300 (381)
.+|+...+ +..||.+|.+ ..++++.......||..+..+ ...++.+++||.|.++.-
T Consensus 5 vNG~~~e~---~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 5 INGEQREV---QSASVAALMT----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTP 61 (73)
T ss_dssp ETTEEECC---CCSBHHHHHH----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECC
T ss_pred ECCEEEEc---CCCcHHHHHH----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEcc
Confidence 35665544 6689999955 557777777788999988543 445678999999988743
No 297
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=69.04 E-value=23 Score=25.35 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=38.0
Q ss_pred EEEecCCchHHHHHHHhhhhhC-C-----C-------CCceEEEecCcccCCCCcccccccCCCCEEEEEEeecc
Q 016849 166 TLEVESSDTIDNVKAKIQDKEG-I-----P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (381)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~-i-----p-------~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~ 227 (381)
.+++ ...||.+|.+.+..++. + . .....+..||+....... .++-+++||+|.++...++
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~G 92 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAG 92 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTT
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCC
Confidence 3554 45799999999987652 0 0 012455667766553222 3467899999988865443
No 298
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=69.00 E-value=12 Score=25.44 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=40.7
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
|.|.|..++|+. .++..+.|+.+|-..+.... +....-...+|+..+-+. -+++|+.|.+...
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl~~-----~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDL--GDHCIGAKVNHKLVPLSY-----VLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHH--HHTEEEEEETTEECCTTC-----BCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhcc--ccceEEEEECCEEeCCCc-----CcCCCCEEEEEEC
Confidence 667788778875 56678899999988874332 122233356888766543 3445787776643
No 299
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=67.78 E-value=11 Score=26.13 Aligned_cols=57 Identities=4% Similarity=0.099 Sum_probs=38.3
Q ss_pred cEEEEEecCCchHHHHHHHhhhhhC-----CCCCceEEEecCcccCCCCcccccccCCCCEEEEEEee
Q 016849 163 KTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (381)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~~~-----ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (381)
....++ ....||.+|.+.+..... ++.....+..||+... .+.-+++||+|.++...
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-----~~~~l~~gD~V~i~Ppv 78 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFPPV 78 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-----TTCBCCTTCEEEEECCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-----CCCCCCCCCEEEEeCCC
Confidence 345555 567799999999875532 2333445667887664 25578899999887543
No 300
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=67.75 E-value=20 Score=26.26 Aligned_cols=73 Identities=14% Similarity=0.268 Sum_probs=44.6
Q ss_pred eeeEEEee------CCcEEEEEeeCcchHHHHHHHHHhHhC-CCC---------CCe-------EEEECCEEcCCCCccc
Q 016849 305 MQIFVKTL------TGKTITLEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTLA 361 (381)
Q Consensus 305 m~I~v~~~------~g~~~~~~v~~~~tV~~lK~~i~~~~g-i~~---------~~q-------~L~~~g~~L~d~~~L~ 361 (381)
|+|.|+.. .|. ..++++ ..||.+|.+.+..... +.. ... .+..||+...... -.
T Consensus 4 m~v~V~~fa~lr~~~g~-~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~ 80 (99)
T 2l52_A 4 AEVKVKLFANLREAAGT-PELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GL 80 (99)
T ss_dssp CEEEEEECTHHHHHHSS-SEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-ST
T ss_pred eEEEEEEeHHHHHHhCC-CeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CC
Confidence 55666643 232 233444 6899999999988741 111 012 5677887664221 12
Q ss_pred ccCCCCCCEEEEEEecCCC
Q 016849 362 DYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 362 ~~~i~~~~~i~l~~~~~GG 380 (381)
+.-+++|+.|.+.-...||
T Consensus 81 ~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 81 ETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp TSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCEEEEECCCCCC
Confidence 4457789999998777776
No 301
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=67.70 E-value=14 Score=26.30 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=32.9
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~ 348 (381)
+|+|.+- .++..+.+.|+++.+.++|+.+|..+..+. .+.++
T Consensus 12 ~~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~ 53 (85)
T 1ip9_A 12 TTKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ 53 (85)
T ss_dssp CEEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred ceEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence 4555554 446789999999999999999999999983 44443
No 302
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=66.72 E-value=8.9 Score=25.72 Aligned_cols=58 Identities=9% Similarity=0.152 Sum_probs=39.0
Q ss_pred cCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEee
Q 016849 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (381)
Q Consensus 161 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (381)
+|+. +++....||.+|.+.+ ++++....+..+|+..... ...+.-+++||.|.++..-
T Consensus 6 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 6 NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESC
T ss_pred CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeec
Confidence 4664 3456678999998876 5666666677788776432 2234567889999887543
No 303
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=66.23 E-value=10 Score=27.87 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=31.2
Q ss_pred CCeEEEEEccC-------CcEEEEEEeCCCCHHHHHHHHHhHhCCC
Q 016849 75 GGMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 113 (381)
Q Consensus 75 ~~~~i~v~~~~-------g~~~~l~v~~~~tV~~lK~~i~~~~gip 113 (381)
+.+.|.|...+ +..+.+-|+++.+..+|..+|.++++++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 44666666442 5578999999999999999999998876
No 304
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=65.71 E-value=16 Score=26.95 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=45.6
Q ss_pred cCCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCe-EEE------EcCeeccCCCccccc
Q 016849 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI------FAGKQLEDGRTLADY 135 (381)
Q Consensus 74 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~------~~g~~L~d~~tl~~~ 135 (381)
.+...|.|-..+|..-++.|++.+|+.++-+.+..+.+...+.- .|+ +..|.++|+..+-+.
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 34566778789999999999999999999999999988664432 222 123667877655443
No 305
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=64.76 E-value=34 Score=24.13 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=49.6
Q ss_pred EEEEEeeCcchHHHHHHHHHhHh-C--C---CCCCeEEEECC--EEcCCCCcccccCCCCCCEEEEEEe
Q 016849 316 TITLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~-g--i---~~~~q~L~~~g--~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
...+.|+..+|..++=++++... | + |-.-.+..++| +.+..+.|+++-||.+-..|.+.+.
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 35678999999999999998775 3 3 22246777888 8999999999999999999988754
No 306
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=63.83 E-value=32 Score=25.51 Aligned_cols=67 Identities=7% Similarity=0.171 Sum_probs=48.6
Q ss_pred EeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE---CCE--EcCCCCcccccCCCCCCEEEEEEe
Q 016849 310 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 310 ~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~---~g~--~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
-..+....++.+..+.|+++++..++++.+...+.+.|+- +|. .|++++.--.-.+.-..-|++..|
T Consensus 15 y~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 15 YITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp ECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3456678889999999999999999999998877888764 666 345554333333444677887765
No 307
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=63.35 E-value=12 Score=25.74 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=39.0
Q ss_pred cEEEEEecCCchHHHHHHHhhhhhCCCCCce--EEEecCcccCCCCcccccccCCCCEEEEEEee
Q 016849 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (381)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q--~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (381)
....+++....||.+|.+.+...+.- .... .+..||+.... +.-+++||.|.++...
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~ppv 74 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPPV 74 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECT-----TSEECTTCEEEEECSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCC-----CCCcCCCCEEEEECCC
Confidence 34567777788999999998766420 1222 56678887764 3578899999887543
No 308
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=62.83 E-value=13 Score=34.50 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=40.6
Q ss_pred CCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEECCE-Ec-CCCCcccccC
Q 016849 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QL-EDGRTLADYN 364 (381)
Q Consensus 313 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~g~-~L-~d~~~L~~~~ 364 (381)
+-....+.+.+..|+.++++.+++.++++++.|.|.+.+. .. +....-..|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 4456678889999999999999999999999999999873 33 3344444443
No 309
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=62.03 E-value=45 Score=24.72 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=50.8
Q ss_pred EEeccCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEE---ecCc--ccCCCCcccccccCCCCEEEEEEee
Q 016849 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLRL 225 (381)
Q Consensus 157 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~---~~g~--~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (381)
|-..+..-+++.+....|+.+++..+.++.+...+.+.|+ ++|. .|+++..--.-.+..+..|++..+.
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 3344566778888899999999999999999887778776 5674 4566555555566677788777653
No 310
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=61.32 E-value=21 Score=27.50 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=38.5
Q ss_pred EEEeeC----cchHHHHHHHHHhHhCCCCCCeEEEE--CCEEc-----CC--CCcccccCCCCCCEEEEE
Q 016849 318 TLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL-----ED--GRTLADYNIQKESTLHLV 374 (381)
Q Consensus 318 ~~~v~~----~~tV~~lK~~i~~~~gi~~~~q~L~~--~g~~L-----~d--~~~L~~~~i~~~~~i~l~ 374 (381)
.+.|++ ..|..+|-..+..++|... ...+.- +.+.| +| +++|+++|+++|+.|.++
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 445553 4689998888888888763 444432 23333 22 479999999999998875
No 311
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=59.70 E-value=43 Score=23.61 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=47.1
Q ss_pred EEEEecCCchHHHHHHHhhhhh-C--C---CCCceEEEecC--cccCCCCcccccccCCCCEEEEEE
Q 016849 165 ITLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 223 (381)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~-~--i---p~~~q~L~~~g--~~L~d~~tL~~y~i~~~~~i~l~~ 223 (381)
.-+.|+..+|+.++-+++.... | + |..-.+..++| +.+..+.|+++.||.+-+.|.+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 3467899999999999987532 2 3 22346777899 899999999999999999988765
No 312
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=58.57 E-value=8.5 Score=29.05 Aligned_cols=65 Identities=15% Similarity=0.334 Sum_probs=36.8
Q ss_pred cEEEEEecC----CchHHHHHHHhhhhhCCCCCceEEE-ecC--c------ccCCCCcc-----cccccCCCCEEEEEEe
Q 016849 163 KTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRTL-----ADYNIQKESTLHLVLR 224 (381)
Q Consensus 163 ~~~~i~v~~----~~tV~~lK~~i~~~~~ip~~~q~L~-~~g--~------~L~d~~tL-----~~y~i~~~~~i~l~~~ 224 (381)
+...++++. ..||.+|-+.+.+.. |..+-.++ -+| . +|-+++.. .+|-+++||+|.++.+
T Consensus 21 ~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fist 98 (110)
T 2k9x_A 21 KQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIST 98 (110)
T ss_dssp SCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEEC
T ss_pred CeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeCC
Confidence 444566663 249999998888765 22122222 112 1 23233322 3577999999888766
Q ss_pred eccce
Q 016849 225 LRGGM 229 (381)
Q Consensus 225 ~~~~~ 229 (381)
..++.
T Consensus 99 lhg~~ 103 (110)
T 2k9x_A 99 LHGGL 103 (110)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 65554
No 313
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=58.21 E-value=16 Score=25.62 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=42.5
Q ss_pred eeeeEEeccCcEEEEEEecCCcHHHHHHhhhhccCCCcccceeeecCccccCCccccccccccCceeeEEEE
Q 016849 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (381)
Q Consensus 229 ~~i~vk~~~g~~~~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~~~ 300 (381)
-.|+|.+++|..+ ++..+.|+.++-..|....+-.. -.-..+|+..+. ++.+++|+++.+...
T Consensus 6 ~~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L-----~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 6 EEVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPI-----DYKVKTGEIIDVLTT 68 (78)
T ss_dssp CEEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECT-----TCBCCTTCBEEEEEC
T ss_pred ceEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCC-----CcccCCCCEEEEEcc
Confidence 3678888889775 46699999999888865443211 112356766554 467889999987643
No 314
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=58.13 E-value=46 Score=23.47 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=49.8
Q ss_pred EEEEEeeCcchHHHHHHHHHhHh-CC--C--CCCeEEEECCEE--cCCCCcccccCCCCCCEEEEEE
Q 016849 316 TITLEVESSDTIDNVKAKIQDKE-GI--P--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~-gi--~--~~~q~L~~~g~~--L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
...+.|+..+|+.++=++++... |. + |.-.+..++|.. +..+.++++-||++-+.|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 45678999999999999988775 42 1 236788899997 9999999999999999998875
No 315
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=56.70 E-value=4.9 Score=28.08 Aligned_cols=48 Identities=6% Similarity=0.152 Sum_probs=35.4
Q ss_pred EEEecCCcHHHHHHhhhhccCCCcccceeeecCccccCCccccccccccCceeeEEE
Q 016849 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (381)
Q Consensus 243 ~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~~ 299 (381)
+++.+..||.+|.+.+. +|.....+..||+....+ +.+++||.|.+++
T Consensus 25 ~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 25 IEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 45567889999987764 555555677888887654 6788999887764
No 316
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=56.66 E-value=13 Score=25.10 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=37.8
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecCeeccCCCccccccccccccceee
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g~~L~d~~tl~~~~i~~~s~i~l~ 70 (381)
|.|.|..++|+. .++....|+.++-+.+....+ ...--...+|+..+-+ +.+.+++.+.++
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 889999999986 466678999999888743321 1111224567765543 334455555543
No 317
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=56.05 E-value=27 Score=23.07 Aligned_cols=57 Identities=11% Similarity=0.246 Sum_probs=39.1
Q ss_pred cCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEee
Q 016849 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (381)
Q Consensus 161 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (381)
+|+.+. + ...||.+|.+.+ ++++....+..+|+....+ ...+.-+++||.|.++...
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V 61 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALM 61 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECC
T ss_pred CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeec
Confidence 566554 4 568999998877 4566666677788776432 3344568899999888543
No 318
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=55.97 E-value=9.8 Score=38.53 Aligned_cols=53 Identities=28% Similarity=0.538 Sum_probs=43.0
Q ss_pred CCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEecC-eeccCCCcccccc
Q 016849 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-KQLEDGRTLADYN 60 (381)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~~g-~~L~d~~tl~~~~ 60 (381)
..++..++.+.+..|+.+++++|.+..|||++.|.+++.+ ..++.....++|.
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhhe
Confidence 4567778999999999999999999999999999999964 4445555555554
No 319
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=53.92 E-value=46 Score=23.64 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=33.6
Q ss_pred eeeEEEeccCcEEEEEecCCchHHHHHHHhhhhhCCCCCceEEEecCc
Q 016849 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 200 (381)
Q Consensus 153 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~ 200 (381)
|.|.+- ..+..+.+.|+++.+..+|+.+|.++..+. +...+.|++.
T Consensus 13 ~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 13 TKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFD 58 (85)
T ss_dssp EEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSS
T ss_pred eEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCC
Confidence 444442 356789999999999999999999999983 3333445543
No 320
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=53.42 E-value=11 Score=26.44 Aligned_cols=57 Identities=12% Similarity=0.261 Sum_probs=40.7
Q ss_pred ccCcEEEEEEe--cCCcHHHHHHhhhhccCCC-cccceeeecCccccCCccccccccccCceeeEEE
Q 016849 236 LTGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (381)
Q Consensus 236 ~~g~~~~~~v~--~~~tV~~Lk~~i~~~~~ip-~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~~ 299 (381)
.+|+.. ++. +..||.+|.+. ++++ +....+..||..+..+ ...++.+++||.|.++.
T Consensus 5 vNGe~~--e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 5 VNGKPS--TVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp ETTEEE--ECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred ECCEEE--EcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 356644 445 67899999654 4666 6666777999988644 45567899999998874
No 321
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=53.32 E-value=17 Score=26.77 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=34.4
Q ss_pred eeeEEEeeC-------CcEEEEEeeCcchHHHHHHHHHhHhCCCCCC-----eEEEEC
Q 016849 305 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-----QRLIFA 350 (381)
Q Consensus 305 m~I~v~~~~-------g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-----q~L~~~ 350 (381)
+.|.+...+ +..+.+-|.++.+..+|..+|.++.+++... .+|.|.
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYk 63 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ 63 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEE
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEE
Confidence 455555442 5689999999999999999999999875222 466663
No 322
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=52.59 E-value=60 Score=23.12 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=37.2
Q ss_pred EEEEEee-CcchHHHHHHHHHhHhCCCCCCeEEE-EC---CEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 316 TITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLI-FA---GKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 316 ~~~~~v~-~~~tV~~lK~~i~~~~gi~~~~q~L~-~~---g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
...+.++ ...+|.|||..|..+.++.....-|. ++ |++..|+..| |..++.|-+.-...+|
T Consensus 19 ~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~~l----IprnssViVrRvP~~~ 84 (86)
T 2c7h_A 19 YDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNAL----IPKNSSVIVRRIPIGG 84 (86)
T ss_dssp EEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTTCE----EETTCCEEEEEEECSS
T ss_pred cceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCceE----EecCCEEEEEeccCcc
Confidence 4556666 46799999999999998876556553 33 4455554333 3345555554333333
No 323
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=52.58 E-value=49 Score=23.19 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=37.2
Q ss_pred EEecCCchHHHHHHHhhhhhC------C-----CCCceEEEecCcccCCCCcccccccCCCCEEEEEEee
Q 016849 167 LEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (381)
Q Consensus 167 i~v~~~~tV~~lK~~i~~~~~------i-----p~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (381)
++++...||.+|.+.+..+.. + ......+..||+..... .-.++-+++||+|.++...
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv 87 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPV 87 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCT
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCC
Confidence 345556899999999877642 1 11345566788766532 2234568999999887543
No 324
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=52.00 E-value=20 Score=29.18 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=42.8
Q ss_pred EEEeeCcchHHHHHHHHHhHhC-CC---------CCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 016849 318 TLEVESSDTIDNVKAKIQDKEG-IP---------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381 (381)
Q Consensus 318 ~~~v~~~~tV~~lK~~i~~~~g-i~---------~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG~ 381 (381)
.+++.. .||.+|.+.+...+. +. .....+.-||+......- .+.-+++|+.|.+.-...||+
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG~ 88 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGGG 88 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECcccccc
Confidence 445655 899999999987741 10 234567779988765322 244578899999988887773
No 325
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=51.60 E-value=28 Score=25.24 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=39.9
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~ 349 (381)
...|.+--++++...++|.|+.|+.|--.++.+.-|+.++....+-
T Consensus 17 ~~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy~ 62 (95)
T 2l05_A 17 KPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYR 62 (95)
T ss_dssp SCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ccEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEEE
Confidence 3456677889999999999999999999999999999998877763
No 326
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=50.36 E-value=59 Score=22.93 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=47.1
Q ss_pred EEEEecCCchHHHHHHHhhhhh-C--CCC--CceEEEecCcc--cCCCCcccccccCCCCEEEEEE
Q 016849 165 ITLEVESSDTIDNVKAKIQDKE-G--IPP--DQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 223 (381)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~-~--ip~--~~q~L~~~g~~--L~d~~tL~~y~i~~~~~i~l~~ 223 (381)
.-+.|+..+|+.++-+++.... | +++ .-.+..++|+. +..+.++++-||.+-+.|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 3467899999999999987532 3 322 25677889988 9999999999999999998775
No 327
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=49.84 E-value=11 Score=28.49 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=44.0
Q ss_pred CeeeEEEee------CCcEEEEEeeC----cchHHHHHHHHHhHhCCCCCCeEEE-ECC--E------EcCCCCcc----
Q 016849 304 GMQIFVKTL------TGKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRTL---- 360 (381)
Q Consensus 304 ~m~I~v~~~------~g~~~~~~v~~----~~tV~~lK~~i~~~~gi~~~~q~L~-~~g--~------~L~d~~~L---- 360 (381)
.|+|.|+.. -|+...++++. ..||.+|-..+.+... ...-.|+ -+| . .|-|+.-.
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 356666643 24555677763 3499999999988751 1122222 122 1 12222221
Q ss_pred -cccCCCCCCEEEEEEecCCC
Q 016849 361 -ADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 361 -~~~~i~~~~~i~l~~~~~GG 380 (381)
.+|-+++|+.|.+...+-||
T Consensus 82 gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC
T ss_pred CcccCCCCcCEEEEeCCCccc
Confidence 35778899999998777777
No 328
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=49.06 E-value=5.8 Score=29.55 Aligned_cols=68 Identities=25% Similarity=0.398 Sum_probs=48.3
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCC--CeEEEE--CCE-EcCCCCcccccCCCCCCEEEEE
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIF--AGK-QLEDGRTLADYNIQKESTLHLV 374 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~--~q~L~~--~g~-~L~d~~~L~~~~i~~~~~i~l~ 374 (381)
.|+|.+.+ ...++.|..+.-|..+..++-+..+++.+ +--|-. .-+ .+.-..||..|||+.++.++++
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 45555544 66888999999999999999988776533 111222 122 3667789999999999887654
No 329
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=48.24 E-value=84 Score=23.56 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=42.4
Q ss_pred eEEEEEccC------C--cEEEEEEeC---CCCHHHHHHHHHhHh-CCC---------CCC-eEEEEcCeeccCCCcccc
Q 016849 77 MQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKE-GIP---------PDQ-QRLIFAGKQLEDGRTLAD 134 (381)
Q Consensus 77 ~~i~v~~~~------g--~~~~l~v~~---~~tV~~lK~~i~~~~-gip---------~~~-q~L~~~g~~L~d~~tl~~ 134 (381)
|.|+|+... | +.+.++++. ..||.+|.+.+.+.+ +.. ... ..+..||+..+-- -=.+
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l-~gld 90 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELL-GELD 90 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHH-CTTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeecc-CCcC
Confidence 667776542 3 366788873 369999999998765 111 111 1222344321100 0134
Q ss_pred cccccCCceeEEEeeecc
Q 016849 135 YNIQKESTLHLVLRLRGG 152 (381)
Q Consensus 135 ~~i~~~~~i~l~~~~~~~ 152 (381)
+-+++|+.|.+....+++
T Consensus 91 t~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 91 YQLQDQDSILFISTLHGG 108 (114)
T ss_dssp CBCCSSEEEEEEECSCCC
T ss_pred cCCCCCCEEEEeCCCCCC
Confidence 778889988887665555
No 330
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=47.45 E-value=32 Score=30.56 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=43.8
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEEC-------CEEcCCCCcccc
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD 362 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~-------g~~L~d~~~L~~ 362 (381)
.|.|-..+|...++.|++++|+.||-+.+..+.+.+...-+-++. -+.|+|...+.+
T Consensus 33 ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 33 VIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp EEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 355556778999999999999999999999998877666665552 456777766554
No 331
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=47.44 E-value=45 Score=24.37 Aligned_cols=56 Identities=5% Similarity=0.063 Sum_probs=40.9
Q ss_pred cEEEEEEecCCcHHHHHHhhhh--cc-CCCcccceeeecCccccCCccccccccccCceeeEEE
Q 016849 239 KTITLEVESSDTIDNVKAKIQD--KE-GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (381)
Q Consensus 239 ~~~~~~v~~~~tV~~Lk~~i~~--~~-~ip~~~q~L~~~g~~l~d~~tl~~y~i~~~~tl~l~~ 299 (381)
..+.+++.++.||.++-++.-- ++ .+..+...+..+|+... .++.+++||.|.+..
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 4557888999999999777543 32 34555566778888876 556689999998863
No 332
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=47.38 E-value=16 Score=26.89 Aligned_cols=59 Identities=12% Similarity=0.250 Sum_probs=40.4
Q ss_pred EEEEEEeCCCCHHHHHHHHHhHhCCCCC-----------CeEEEEcC-eecc------CCCcccccccccCCceeEE
Q 016849 88 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLE------DGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-----------~q~L~~~g-~~L~------d~~tl~~~~i~~~~~i~l~ 146 (381)
...++++++.|..+|.+.+.+.-.+.-. ...|+..+ ..|+ -+++|.+.|+.+|..|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4567899999999999999874333222 23344333 1232 2578999999999998886
No 333
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=47.37 E-value=65 Score=23.46 Aligned_cols=68 Identities=7% Similarity=0.037 Sum_probs=46.0
Q ss_pred eeeEEEee-C--CcEEEEEeeCcchHHHHHHHHHh---HhCCCCCCeEEEECCEEcCCCCcccccCCCCCCEEEEEEec
Q 016849 305 MQIFVKTL-T--GKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 377 (381)
Q Consensus 305 m~I~v~~~-~--g~~~~~~v~~~~tV~~lK~~i~~---~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 377 (381)
|.|-|... . ...+.+++.++.||+++-+...- ...|+.....+-.+|+....+ .-+++|+.|.+.-.+
T Consensus 13 ~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d-----~~L~dGDRVEIyrpl 86 (97)
T 2hj1_A 13 INIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLT-----DVLKEGDRIEIYRPL 86 (97)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTT-----CBCCTTCEEEECCCC
T ss_pred EEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCC-----ccCCCCCEEEEEecc
Confidence 45555532 2 33566788899999999888753 235666667788888877744 445669999886543
No 334
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=46.68 E-value=9.6 Score=28.39 Aligned_cols=70 Identities=24% Similarity=0.350 Sum_probs=53.0
Q ss_pred EEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCcc--ceEEecC---eeccCCCccccccccccccceeeEe
Q 016849 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFAG---KQLEDGRTLADYNIQKESTLHLVLR 72 (381)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~--q~l~~~g---~~L~d~~tl~~~~i~~~s~i~l~~~ 72 (381)
.|+|..++ ...+++|.-.--|..+..|+.++.+++.+. --|.+-- -.|.-..||..|+|+-.+.+++...
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC-
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecCC
Confidence 45666666 788888888888999999999998887665 2333322 2356678999999999999998664
No 335
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=46.59 E-value=26 Score=31.32 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=36.1
Q ss_pred CEEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCcc
Q 016849 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (381)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~ 40 (381)
+.+.|..++|...++.|+++.|+.++=..|.++.|+....
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~ 57 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEED 57 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGG
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcc
Confidence 4577889999999999999999999999999999997544
No 336
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=46.12 E-value=46 Score=23.68 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=37.8
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~ 349 (381)
|.+.-++++...++|.|+.|+.+--.++.++-++.++....+.
T Consensus 10 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~ 52 (86)
T 1wxm_A 10 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYR 52 (86)
T ss_dssp EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEE
Confidence 4555788999999999999999999999999999998887764
No 337
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.03 E-value=30 Score=25.02 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=35.6
Q ss_pred chHHHHHHHHHhHhCCCCCCeEEEE--CCEEcCCCCcccccCCCCCCEEEEEEe
Q 016849 325 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 376 (381)
Q Consensus 325 ~tV~~lK~~i~~~~gi~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~~i~l~~~ 376 (381)
.+..||+.+.+++.+++....+|+. +|..++|+.-+..+ +..|+.+.++
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEc
Confidence 4899999999999999866666665 69999877544443 2456666554
No 338
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=45.56 E-value=37 Score=33.30 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=44.5
Q ss_pred CeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCC--CCeEEEEC--C--EEcCCCCccc
Q 016849 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFA--G--KQLEDGRTLA 361 (381)
Q Consensus 304 ~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~--~~q~L~~~--g--~~L~d~~~L~ 361 (381)
++.+.|..++|....+.+++++|+.||-..|+++.|+.. +.+-|++. + +.|+++..+.
T Consensus 216 ~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~ 279 (555)
T 3au4_A 216 EMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVA 279 (555)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHH
T ss_pred CcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchh
Confidence 466778889999999999999999999999999999974 45566552 2 2355554443
No 339
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=44.74 E-value=65 Score=22.51 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=53.8
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE-CCEEcCCCCcccccCCCCCCEEEEEEecCCC
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~-~g~~L~d~~~L~~~~i~~~~~i~l~~~~~GG 380 (381)
...+.|.+.+....+-+-.++.+.+|+...-++- +|.-++..++-...-++.||.+.|.-|-|=|
T Consensus 25 fkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 25 YKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred ceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 4567889888888888888899999998776554 6888888999888889999999999886644
No 340
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=44.68 E-value=44 Score=23.25 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=36.9
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~ 348 (381)
|.+.-++++...++|.|+.|+.|--.++.++-|+.++....+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 445568899999999999999999999999999999887776
No 341
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=43.16 E-value=49 Score=25.42 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=36.6
Q ss_pred CchHHHHHHHhhhhhCCCC-------CceEEEecCcccCC--CCcccccccCCCCEEEEEEe
Q 016849 172 SDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLR 224 (381)
Q Consensus 172 ~~tV~~lK~~i~~~~~ip~-------~~q~L~~~g~~L~d--~~tL~~y~i~~~~~i~l~~~ 224 (381)
..|..+|-+.+..++|.+. ..++|+|.-- .+| +++|++.|++.|+.+.+.--
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~D-fDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYD-FEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETT-BCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCC-ccccccCcHHHcCcCCCcEEEEEcc
Confidence 4589999888888888763 1234444322 122 69999999999999977753
No 342
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=42.31 E-value=68 Score=24.80 Aligned_cols=76 Identities=9% Similarity=0.204 Sum_probs=51.2
Q ss_pred ecCCeEEEEEccCCcE-------EEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEE-EcCeec-cCCCccccccc---ccC
Q 016849 73 LRGGMQIFVKTLTGKT-------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADYNI---QKE 140 (381)
Q Consensus 73 ~~~~~~i~v~~~~g~~-------~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~g~~L-~d~~tl~~~~i---~~~ 140 (381)
.++.+.|.|+-..+.. -.+-|+.+.||.++...|..+.++++++-.++ |.+..+ ..+.++++..= .++
T Consensus 32 yP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeD 111 (130)
T 2zjd_A 32 HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDED 111 (130)
T ss_dssp CTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTT
T ss_pred CCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCC
Confidence 3466777776443322 34568999999999999999999999887777 766555 44556665321 234
Q ss_pred CceeEEEe
Q 016849 141 STLHLVLR 148 (381)
Q Consensus 141 ~~i~l~~~ 148 (381)
..+++...
T Consensus 112 GfLyv~Ys 119 (130)
T 2zjd_A 112 GFLYMVYA 119 (130)
T ss_dssp SCEEEEEE
T ss_pred CEEEEEEe
Confidence 56666544
No 343
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=40.96 E-value=38 Score=24.56 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=33.5
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeE-EEECCE
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 352 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~-L~~~g~ 352 (381)
...+++.|++..+=.++|+.++..+++.+..-+ +...|+
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 468999999999999999999999999998875 345554
No 344
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=39.82 E-value=34 Score=25.20 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=33.3
Q ss_pred chHHHHHHHHHhHhCCCCC--CeEEE--ECCEEcCCCCcccccCCCCCCEEEEEE
Q 016849 325 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADYNIQKESTLHLVL 375 (381)
Q Consensus 325 ~tV~~lK~~i~~~~gi~~~--~q~L~--~~g~~L~d~~~L~~~~i~~~~~i~l~~ 375 (381)
.+..||+.+.+++.+++.. ..+|+ .+|..++|+.-+..+. ..|+.+.+
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp---~nT~lmvL 88 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP---SNTKFVAL 88 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC---SCCEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC---CCCEEEEE
Confidence 4899999999999999753 24444 4799998776544432 34454444
No 345
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=38.70 E-value=69 Score=23.91 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=28.9
Q ss_pred CCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhH
Q 016849 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 109 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~ 109 (381)
..+.|.+=.++|--++++++.+.|+.++|..+.+.
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 34556666778888999999999999999998765
No 346
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=38.37 E-value=1.1e+02 Score=21.84 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=28.7
Q ss_pred eeEEEeccCcE-EEEEecCC-chHHHHHHHhhhhhCCCCCceEE-Eec
Q 016849 154 QIFVKTLTGKT-ITLEVESS-DTIDNVKAKIQDKEGIPPDQQRL-IFA 198 (381)
Q Consensus 154 ~v~v~~~~g~~-~~i~v~~~-~tV~~lK~~i~~~~~ip~~~q~L-~~~ 198 (381)
.|+.+..+.+. -.+.++.. -+|.+||+.|..+.++-....-| +++
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~n 55 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITN 55 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEE
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeC
Confidence 35566655543 44666544 59999999999887765444444 344
No 347
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=38.15 E-value=74 Score=24.60 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=41.3
Q ss_pred EEEecCCchHHHHHHHhhhhhCCCCCceEEE-ecCccc-CCCCcccccc---cCCCCEEEEEEe
Q 016849 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADYN---IQKESTLHLVLR 224 (381)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~-~~g~~L-~d~~tL~~y~---i~~~~~i~l~~~ 224 (381)
.+-|+.+.||+++...|.++.++++++-.++ |.+..+ ..+.++++.. -.++..+++...
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 4568889999999999999999998876666 777655 4455555432 123456666554
No 348
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=37.38 E-value=42 Score=29.33 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=38.6
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEEC-------CEEcCCCCccc
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLA 361 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~-------g~~L~d~~~L~ 361 (381)
.|.|-..+|...++.|++++|+.||=..+..+.+++.+.-+.++. -+.|+|...+-
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ 72 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVV 72 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHH
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHH
Confidence 455566789999999999999999999999988876666666553 45677776544
No 349
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=36.65 E-value=67 Score=28.00 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=36.7
Q ss_pred eeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE
Q 016849 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349 (381)
Q Consensus 305 m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~ 349 (381)
+.|.|-..+|.+.++.|++++|+.|+-..+..+.+++.+...-++
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~ 79 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLY 79 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEE
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 345556788999999999999999999999999998776554333
No 350
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=36.33 E-value=2.5e+02 Score=25.59 Aligned_cols=133 Identities=15% Similarity=0.222 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHhHhCCCCCCeEEEEcCeeccCCCcccccccccCCceeEEEeeecceeeEEEeccCcEEEEEecC-Cch
Q 016849 96 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDT 174 (381)
Q Consensus 96 ~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~-~~t 174 (381)
..|+.++++.|.++..- |- .+-.+.+.+.......|+|...-.+.-.+.+.. ..|
T Consensus 118 G~T~~e~~~~I~~~L~~----------------------~~--~~P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~t 173 (359)
T 2j58_A 118 GKTVSQVRQDITSRLTT----------------------YI--ESPQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPLT 173 (359)
T ss_dssp TCCHHHHHHHHHHHHTT----------------------TS--SSCCEEEEEEECCSCEEEEEESBSSCEEEECCSSCCB
T ss_pred CCCHHHHHHHHHHHHHH----------------------hc--cCCeEEEEEccCCceEEEEEceecCCeEEEeCCCCCc
Confidence 67999999999877531 10 123344444444455677765444445566666 677
Q ss_pred HHHHHHHhhhhhCCC----CCceEEEecCcc--------cCCCCcccccccCCCCEEEEEEeeccceeeeEEeccCcEEE
Q 016849 175 IDNVKAKIQDKEGIP----PDQQRLIFAGKQ--------LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 242 (381)
Q Consensus 175 V~~lK~~i~~~~~ip----~~~q~L~~~g~~--------L~d~~tL~~y~i~~~~~i~l~~~~~~~~~i~vk~~~g~~~~ 242 (381)
|.+.-.+- =|+. ...-.|+.+|+. +.+...-.++-+++||+|++.... ...+++...-++.-.
T Consensus 174 l~~ai~~A---GG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~~~--~~~v~V~GeV~~pg~ 248 (359)
T 2j58_A 174 VMDAINAA---GGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFIPSND--DLKVFVMGEVGKQST 248 (359)
T ss_dssp HHHHHHHT---TSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEECBGG--GCEEEEEESBSSCEE
T ss_pred HHHHHHHc---CCCCcccccceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEEeece--eeeEEeeccccCcce
Confidence 77655443 3332 234566666653 233444556789999999886443 234666666667778
Q ss_pred EEEe-cCCcHHHHHHh
Q 016849 243 LEVE-SSDTIDNVKAK 257 (381)
Q Consensus 243 ~~v~-~~~tV~~Lk~~ 257 (381)
++++ ++.|+.++...
T Consensus 249 ~~l~~~~~tl~eal~~ 264 (359)
T 2j58_A 249 LKMDRSGMTLAEALGN 264 (359)
T ss_dssp EECBTTBCBHHHHHHH
T ss_pred EeecCCCCCHHHHHHh
Confidence 8886 68899988654
No 351
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=35.80 E-value=41 Score=33.77 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=39.8
Q ss_pred cCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCC-CCCeEEEE
Q 016849 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF 349 (381)
Q Consensus 303 ~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~-~~~q~L~~ 349 (381)
.+|.+.|..++|....+.|++.+|+.++-..|+.+.|+. .+.+-|++
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 356788889999999999999999999999999999964 34556665
No 352
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=35.76 E-value=42 Score=24.41 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=29.9
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEE
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 347 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L 347 (381)
++ +++.|++..|=.++|+.++..+++.+...+-
T Consensus 23 n~-y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT 55 (95)
T 2zjr_Q 23 GV-YSFWVSPKATKTEIKDAIQQAFGVRVIGIST 55 (95)
T ss_dssp TC-CEEEECSSCTHHHHHHHHHHHHCCCCSEEEE
T ss_pred CE-EEEEEcCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 44 9999999999999999999999999987763
No 353
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=35.75 E-value=37 Score=24.17 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=31.0
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~ 348 (381)
.+++++.|++..|=.++|+.++..+++.+..-+-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~ 56 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQ 56 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEee
Confidence 56899999999999999999999999998776543
No 354
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=35.74 E-value=1.2e+02 Score=21.76 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=35.9
Q ss_pred cEEEEEec--CCchHHHHHHHhhhhhCCCCCc-------------eEEEecCcccCCCCcccccccCCCCEEEEEEeec
Q 016849 163 KTITLEVE--SSDTIDNVKAKIQDKEGIPPDQ-------------QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (381)
Q Consensus 163 ~~~~i~v~--~~~tV~~lK~~i~~~~~ip~~~-------------q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (381)
+...+++. ...||.+|.+.+.++..-.... ..+.-||+..+-. .=.++-+++||+|.++....
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~-~~~d~~L~dgDeVa~~Ppv~ 97 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELE-GEKDYILEDGDIISFTSTLH 97 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGG-TGGGCBCCTTCEEEEEECTT
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcccc-CCCCcCcCCCCEEEEECCCC
Confidence 45667766 6789999999998776311110 1122333321100 01356789999988875433
No 355
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=35.50 E-value=39 Score=24.22 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=33.4
Q ss_pred CEEEEEcCC--CcEEEEEeecCccHHHHHHHHhhhcCCCCcc
Q 016849 1 MQIFVKTLT--GKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (381)
Q Consensus 1 ~~i~~~~~~--g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~ 40 (381)
++|.|+.++ ++++++++..-|-+..|=++++.+.+.+++.
T Consensus 6 YrITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~~~ 47 (88)
T 3cjl_A 6 YQITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTPEQ 47 (88)
T ss_dssp EEEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCHHH
T ss_pred EEEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCHHH
Confidence 368888654 4899999999999999999999988877644
No 356
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=35.48 E-value=65 Score=24.50 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=39.9
Q ss_pred EEEeeCcchHHHHHHHHHhHhCCCCCCeE-EEECCEEcCCCCccccc---CCCCCCEEEEEE
Q 016849 318 TLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLADY---NIQKESTLHLVL 375 (381)
Q Consensus 318 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q~-L~~~g~~L~d~~~L~~~---~i~~~~~i~l~~ 375 (381)
.+-|..+.||+++...|.....+++++-. |+-++.....+.++++. .-..+.-|++..
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKY 112 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEE
Confidence 45689999999999999999999988754 44477755556565442 222233455554
No 357
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=34.24 E-value=30 Score=24.13 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=29.8
Q ss_pred EEEEEeeCcchHHHHHHHHHhHhCCC-----CCCeEEEEC
Q 016849 316 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFA 350 (381)
Q Consensus 316 ~~~~~v~~~~tV~~lK~~i~~~~gi~-----~~~q~L~~~ 350 (381)
.+.+.|+++.+..+|..+|.++.++. ....+|.|.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk 42 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ 42 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEE
Confidence 57889999999999999999999976 466777773
No 358
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=34.04 E-value=1.1e+02 Score=23.15 Aligned_cols=74 Identities=11% Similarity=0.198 Sum_probs=48.7
Q ss_pred cCCeEEEEEccCCcE------EEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEE-cCeeccCCCccccccc---ccCCce
Q 016849 74 RGGMQIFVKTLTGKT------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNI---QKESTL 143 (381)
Q Consensus 74 ~~~~~i~v~~~~g~~------~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-~g~~L~d~~tl~~~~i---~~~~~i 143 (381)
++.+.|.|+-..+.. -.+-|+.+.||+++...|..+..+++++-.++| ++.....+.++++..= .++..+
T Consensus 29 P~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfL 108 (119)
T 3h9d_A 29 PDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFL 108 (119)
T ss_dssp TTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCE
T ss_pred CCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeE
Confidence 455667776544322 245689999999999999999999998766555 6664455666666321 234455
Q ss_pred eEEE
Q 016849 144 HLVL 147 (381)
Q Consensus 144 ~l~~ 147 (381)
++..
T Consensus 109 yv~Y 112 (119)
T 3h9d_A 109 YMKY 112 (119)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 359
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=33.66 E-value=55 Score=24.44 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=32.8
Q ss_pred EEEecCCchHHHHHHHhhhhhCCCCCceEEEecCccc-CCCCccccc
Q 016849 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 211 (381)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L-~d~~tL~~y 211 (381)
.+-|+.+.||+++...|..+.++++++-.++|.+..+ ..+.++++.
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 3567778999999999999999988765455554444 445555543
No 360
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=33.63 E-value=55 Score=24.44 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=41.9
Q ss_pred cCCeEEEEEccCCc------EEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeec-cCCCccccc
Q 016849 74 RGGMQIFVKTLTGK------TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 135 (381)
Q Consensus 74 ~~~~~i~v~~~~g~------~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L-~d~~tl~~~ 135 (381)
++.+.|.|+...+. .-.+-|+.+.||+++...|..+.++++++-.++|.+..+ ..+.++++.
T Consensus 25 p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 25 PDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp TTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 35566666654432 124568889999999999999999999876666655433 444555553
No 361
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=31.84 E-value=1.7e+02 Score=22.16 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=47.2
Q ss_pred cEEEEEEeCCCCHHHHHHHHHh-Hh-------CCCCCCeEEEEcCeecc--CCCcccccccccCCceeEE
Q 016849 87 KTITLEVESSDTIDNVKAKIQD-KE-------GIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~-~~-------gip~~~q~L~~~g~~L~--d~~tl~~~~i~~~~~i~l~ 146 (381)
..+.+.++++++..++-+.+-. .+ .|..++-....+|+... .+++|++-|+...|.|.+.
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 4578999999999999988643 33 35555667888999884 5789999999988877765
No 362
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=31.26 E-value=50 Score=24.18 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=26.3
Q ss_pred EEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCC
Q 016849 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (381)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip 37 (381)
+|.|.+.+|+..++++.+..|+.+.-.+ .|++
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~----~gi~ 33 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD----AGID 33 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH----TTCT
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH----cCCC
Confidence 6889999999999999999999885433 4555
No 363
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=30.73 E-value=40 Score=23.48 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=24.0
Q ss_pred EEEEEeecCccHHHHHHHHhhhcCCC
Q 016849 12 TITLEVESSDTIDNVKAKIQDKEGIP 37 (381)
Q Consensus 12 ~~~~~v~~~dtv~~~K~~i~~~~~ip 37 (381)
.++|.|+++-+..++..||.++.+.+
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 67899999999999999999999975
No 364
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.64 E-value=52 Score=23.47 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=31.1
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~ 348 (381)
..++++.|++..+=.++|+.++..+++.+..-+-.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl 57 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTL 57 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 46899999999999999999999999998776543
No 365
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=30.40 E-value=1.3e+02 Score=26.56 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=42.6
Q ss_pred CeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEc-------CeeccCCCcccc
Q 016849 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD 134 (381)
Q Consensus 76 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-------g~~L~d~~tl~~ 134 (381)
.+.+.|-..+|....+.|++++|++++-..+..+.+.+...-.-+|. .|.|+|...+.+
T Consensus 31 k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 31 KLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred cEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 34566667789999999999999999999888888765444332221 367777766554
No 366
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=30.05 E-value=98 Score=23.54 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=45.7
Q ss_pred EEeccCcEEEEEecCCchHHHHHHHhhhhhCCCCC------ceEEE---ecCc--ccCCCCcccccccCCCCEEEEEEe
Q 016849 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLR 224 (381)
Q Consensus 157 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~------~q~L~---~~g~--~L~d~~tL~~y~i~~~~~i~l~~~ 224 (381)
|-..+..-+++.+....|+.+++..+.++.+...+ .+.|+ ++|. .|+++..--.-.+..+..|++..+
T Consensus 14 VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 14 VYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp EECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred EEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 33445556677888899999999999999987554 56665 5664 345554444445556667766654
No 367
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=29.99 E-value=1e+02 Score=23.39 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=42.8
Q ss_pred EEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCC------CeEEE---EcCe--eccCCCcccccccccCCceeEE
Q 016849 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDGRTLADYNIQKESTLHLV 146 (381)
Q Consensus 79 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~------~q~L~---~~g~--~L~d~~tl~~~~i~~~~~i~l~ 146 (381)
..|=..+..-+++.+..+.|+.+++..++++.+...+ .+.|. ++|. .|+++..--.-.+.-++.|++.
T Consensus 12 ~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc 90 (120)
T 2dhz_A 12 CRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFAC 90 (120)
T ss_dssp ECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEE
T ss_pred EEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEe
Confidence 3343445556678888899999999999999987554 67765 6774 3455433222233334444444
No 368
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=29.85 E-value=68 Score=31.31 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=33.9
Q ss_pred EEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCC
Q 016849 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (381)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~ 38 (381)
.+-|..++|....+.++++.|+.++-+.|.++.|++.
T Consensus 218 ~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e 254 (555)
T 3au4_A 218 TSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMED 254 (555)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTT
T ss_pred ceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCC
Confidence 4567789999999999999999999999999999985
No 369
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=29.53 E-value=49 Score=23.90 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=32.7
Q ss_pred CcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEE-EECCE
Q 016849 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK 352 (381)
Q Consensus 314 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L-~~~g~ 352 (381)
...+++.|++..|=.++|+.++..+++.+...+- ...|+
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 3789999999999999999999999999877653 34443
No 370
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=29.00 E-value=1.1e+02 Score=23.01 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=45.3
Q ss_pred EEEEEcCCCcEEE-EEeecCccHHHHHHHHhhhcCCCCcc--ceEEe----cCeecc-CCCccccccccccccceeeEee
Q 016849 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIF----AGKQLE-DGRTLADYNIQKESTLHLVLRL 73 (381)
Q Consensus 2 ~i~~~~~~g~~~~-~~v~~~dtv~~~K~~i~~~~~ip~~~--q~l~~----~g~~L~-d~~tl~~~~i~~~s~i~l~~~~ 73 (381)
+|.+++-+|.-.. |.+...|-...+-++.-+|++++.++ .+-++ .|++|. -+..=-.|.+...+...++++.
T Consensus 32 RVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~aNVFYAm~~s~~~dFvLR~ 111 (115)
T 1rax_A 32 RVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLKK 111 (115)
T ss_dssp EEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEEEEECSSSCEEEECTTSCHHHHSCTTSCCEEEEEE
T ss_pred EEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCCCCeEecCCCcceEEEEcCCCCccEEEee
Confidence 4667777776665 89999999999999999999987532 22222 244432 1111224555555556666654
Q ss_pred c
Q 016849 74 R 74 (381)
Q Consensus 74 ~ 74 (381)
+
T Consensus 112 r 112 (115)
T 1rax_A 112 R 112 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 371
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=28.55 E-value=1.4e+02 Score=22.54 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=41.7
Q ss_pred cCCeEEEEEccCCcE------EEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeec-cCCCcccc
Q 016849 74 RGGMQIFVKTLTGKT------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134 (381)
Q Consensus 74 ~~~~~i~v~~~~g~~------~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L-~d~~tl~~ 134 (381)
++.+.|.|+-..+.. -.+-|+.+.||+++...|..+..+++++-.++|-+..+ ..+.++++
T Consensus 28 P~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 95 (118)
T 3rui_B 28 KNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 95 (118)
T ss_dssp SSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHH
T ss_pred CCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHH
Confidence 455667676544322 24568999999999999999999998776666643333 44455555
No 372
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=28.44 E-value=1.1e+02 Score=22.25 Aligned_cols=44 Identities=11% Similarity=0.044 Sum_probs=38.2
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEEC
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 350 (381)
|.+--++++...++|.|+.|+.+--.++.+.-|+.++....+-.
T Consensus 16 irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~ 59 (96)
T 3ny5_A 16 VRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRI 59 (96)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEC
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEc
Confidence 55667899999999999999999999999999999887777654
No 373
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=27.50 E-value=31 Score=20.21 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=11.5
Q ss_pred CccHHHHHHHHhhhc
Q 016849 20 SDTIDNVKAKIQDKE 34 (381)
Q Consensus 20 ~dtv~~~K~~i~~~~ 34 (381)
|.||.++|.-||+.+
T Consensus 2 sntvkelknyiqele 16 (46)
T 3he4_B 2 SNTVKELKNYIQELE 16 (46)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 578899998888764
No 374
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=27.41 E-value=70 Score=24.55 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=34.4
Q ss_pred EEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE-CCEEcCCCCcccc
Q 016849 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 362 (381)
Q Consensus 317 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~-~g~~L~d~~~L~~ 362 (381)
..+-|+.+.||+++...|..+..+++++-..+| ++.....+.++++
T Consensus 55 ~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~ 101 (125)
T 3m95_A 55 KKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGS 101 (125)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred CEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHH
Confidence 345689999999999999999999988855555 6654445555544
No 375
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=27.37 E-value=1.4e+02 Score=22.49 Aligned_cols=75 Identities=15% Similarity=0.260 Sum_probs=47.8
Q ss_pred cCCeEEEEEccCCc------EEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEcCeec-cCCCccccccc---ccCCce
Q 016849 74 RGGMQIFVKTLTGK------TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNI---QKESTL 143 (381)
Q Consensus 74 ~~~~~i~v~~~~g~------~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L-~d~~tl~~~~i---~~~~~i 143 (381)
++.+.|.|+...+. .-.+-|+.+.||+++...|..+..+++++-.++|-+..+ ..+.++++..= .++..+
T Consensus 26 P~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfL 105 (117)
T 1eo6_A 26 PDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFL 105 (117)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred CCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEE
Confidence 45566777644332 224568889999999999999999999876666655434 44455655321 234556
Q ss_pred eEEEe
Q 016849 144 HLVLR 148 (381)
Q Consensus 144 ~l~~~ 148 (381)
++...
T Consensus 106 yi~Ys 110 (117)
T 1eo6_A 106 YVAYS 110 (117)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 65543
No 376
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=27.13 E-value=99 Score=23.04 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=44.7
Q ss_pred eeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhC--------CCCCCeEEEE---CCE--EcCCC-CcccccCCCCCCEE
Q 016849 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF---AGK--QLEDG-RTLADYNIQKESTL 371 (381)
Q Consensus 306 ~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g--------i~~~~q~L~~---~g~--~L~d~-~~L~~~~i~~~~~i 371 (381)
.+.+-.++|-.+.+++..+.|+.++|..+-+... -.++.-.+.+ +|. ++.|+ +.|.+...- -..+
T Consensus 21 ~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~piL 99 (108)
T 2v1y_A 21 LVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFL 99 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSEE
T ss_pred EEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceEE
Confidence 3444468899999999999999999998877732 2333334443 233 46554 678887654 3344
Q ss_pred EEEEe
Q 016849 372 HLVLR 376 (381)
Q Consensus 372 ~l~~~ 376 (381)
.++-|
T Consensus 100 klver 104 (108)
T 2v1y_A 100 KVIEP 104 (108)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 44433
No 377
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=26.78 E-value=1.3e+02 Score=22.20 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=37.0
Q ss_pred eEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEE
Q 016849 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348 (381)
Q Consensus 307 I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~ 348 (381)
|.+--++++...++|.|+.|+.|--.++.+.-|+.++....+
T Consensus 21 ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 21 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp EEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 555678899999999999999999999999999998877766
No 378
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=26.11 E-value=1.7e+02 Score=22.14 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=38.1
Q ss_pred EEEecCCchHHHHHHHhhhhhCCCCCceEEEecCccc-CCCCcccccc---cCCCCEEEEEE
Q 016849 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN---IQKESTLHLVL 223 (381)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L-~d~~tL~~y~---i~~~~~i~l~~ 223 (381)
.+-|+.+.||+++...|.++..+++++-.++|-+..+ ..+.++++.. -.++..+++..
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Y 111 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTY 111 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEE
Confidence 3558899999999999999999988765555543344 4455555432 12344555554
No 379
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=25.80 E-value=1.8e+02 Score=20.54 Aligned_cols=58 Identities=12% Similarity=0.324 Sum_probs=33.1
Q ss_pred cccccCceeeEEEEeecCeeeEEE-eeCCcEEEEEee--CcchHHHHHHHHHhH-----hCCCCCC
Q 016849 287 YNIQKESTLHLVLRLRGGMQIFVK-TLTGKTITLEVE--SSDTIDNVKAKIQDK-----EGIPPDQ 344 (381)
Q Consensus 287 y~i~~~~tl~l~~~~~~~m~I~v~-~~~g~~~~~~v~--~~~tV~~lK~~i~~~-----~gi~~~~ 344 (381)
|.+.++.-|+|.+.++..-...++ ..+|+...+.+. |..|+++-+++-.+. .||+|+.
T Consensus 18 ~~~~Dg~GL~L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l~~Gidp~~ 83 (88)
T 3jtz_A 18 FKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLALNINLEH 83 (88)
T ss_dssp EEEECSTTEEEEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHTCC-----
T ss_pred EEEecCCceEEEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHHHcCCCchh
Confidence 444455667777766544333333 467887777665 778888887766554 3787765
No 380
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=25.59 E-value=3.8e+02 Score=24.34 Aligned_cols=173 Identities=16% Similarity=0.259 Sum_probs=102.0
Q ss_pred CCchHHHHHHHhhhhhCCCCCceEEEecCcccCCCCcccccccCCCCEEEEEEeeccceeeeEEeccCcEEEEEEec-CC
Q 016849 171 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SD 249 (381)
Q Consensus 171 ~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~~~i~vk~~~g~~~~~~v~~-~~ 249 (381)
...|+.++++.|.++..= |-. ...+.+.+....+..++|...-.+.-.+.+.+ ..
T Consensus 117 aG~T~~e~~~~I~~~L~~----------------------~~~--~P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~ 172 (359)
T 2j58_A 117 AGKTVSQVRQDITSRLTT----------------------YIE--SPQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPL 172 (359)
T ss_dssp TTCCHHHHHHHHHHHHTT----------------------TSS--SCCEEEEEEECCSCEEEEEESBSSCEEEECCSSCC
T ss_pred CCCCHHHHHHHHHHHHHH----------------------hcc--CCeEEEEEccCCceEEEEEceecCCeEEEeCCCCC
Confidence 466999999999887631 111 22344444444456777777666777788888 77
Q ss_pred cHHHHHHhhhhccCCCcc----cceeeecCcc--------ccCCccccccccccCceeeEEEEeecCeeeEEEeeCCcEE
Q 016849 250 TIDNVKAKIQDKEGIPPD----QQRLIFAGKQ--------LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI 317 (381)
Q Consensus 250 tV~~Lk~~i~~~~~ip~~----~q~L~~~g~~--------l~d~~tl~~y~i~~~~tl~l~~~~~~~m~I~v~~~~g~~~ 317 (381)
||.+.-+ ..-|+... .-.+.-+|+. +.++..-.++-+++||+|++-.+ ....++|...-++.-
T Consensus 173 tl~~ai~---~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~~--~~~~v~V~GeV~~pg 247 (359)
T 2j58_A 173 TVMDAIN---AAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFIPSN--DDLKVFVMGEVGKQS 247 (359)
T ss_dssp BHHHHHH---HTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEECBG--GGCEEEEEESBSSCE
T ss_pred cHHHHHH---HcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEEeec--eeeeEEeeccccCcc
Confidence 8777643 34443221 2223334432 23344455678999999988533 334577777666777
Q ss_pred EEEee-CcchHHHHHHHHHhHhCCCC-C---CeEEEE----CC------E--EcC--CCCc---ccccCCCCCCEEEEEE
Q 016849 318 TLEVE-SSDTIDNVKAKIQDKEGIPP-D---QQRLIF----AG------K--QLE--DGRT---LADYNIQKESTLHLVL 375 (381)
Q Consensus 318 ~~~v~-~~~tV~~lK~~i~~~~gi~~-~---~q~L~~----~g------~--~L~--d~~~---L~~~~i~~~~~i~l~~ 375 (381)
.++++ ++.|+.|+-... -|+.+ . ....++ +| . .++ +... -.++-+++|++|++.-
T Consensus 248 ~~~l~~~~~tl~eal~~A---GGi~~~~A~~~~I~v~R~~~~~~~~~~~~v~~ldl~~~~~~~~~~~f~Lq~gDvVyV~~ 324 (359)
T 2j58_A 248 TLKMDRSGMTLAEALGNA---EGISQEMSDATGIFVVRQLKGDRTGKIADIYQLNAQDASAMVLGTEFQLQPYDIVYVTT 324 (359)
T ss_dssp EEECBTTBCBHHHHHHHT---TCBCTTTEEEEEEEEEEECCSCTTCCCEEEEEECCSBGGGHHHHTTCBCCTTEEEEEEE
T ss_pred eEeecCCCCCHHHHHHhC---CCCCcccCCcceEEEEEecCCCCCccceEEEEecccCcccccccCCCccCCCCEEEEcC
Confidence 88885 689999886653 34544 1 122333 12 1 121 1111 1256689999999864
No 381
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=25.35 E-value=1.1e+02 Score=22.11 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=38.3
Q ss_pred EEE-ecCCcHHHHHHhhhhccCCCcccceeeecCc-cccCCccccccccccCceeeEEEE
Q 016849 243 LEV-ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLADYNIQKESTLHLVLR 300 (381)
Q Consensus 243 ~~v-~~~~tV~~Lk~~i~~~~~ip~~~q~L~~~g~-~l~d~~tl~~y~i~~~~tl~l~~~ 300 (381)
+.+ ..++||+|+-.+|....+-.. .+.++|+.. ..+..+--.+|-++++|.+.++.+
T Consensus 29 viL~~~GsTv~Dfa~~IH~di~~~f-kyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 29 VVLPYSRTTVEDFCMKIHKNLIKEF-KYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 87 (93)
T ss_dssp EEEETTSCCHHHHHHHHCTTCTTTE-EEEEEBSTTSSSSSEEECSSCCCCSSEEECEEEC
T ss_pred EEEecCCCCHHHHHHHHHHHHHhhc-cEEEEecccccCCCEECCCCcEecCCCEEEEEeC
Confidence 556 679999999999988665332 355655422 223445556777889998887754
No 382
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=24.49 E-value=1.6e+02 Score=22.12 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=39.0
Q ss_pred EEEecCCchHHHHHHHhhhhhCCCCCceEEEecCccc-CCCCcccccc---cCCCCEEEEEEe
Q 016849 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN---IQKESTLHLVLR 224 (381)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L-~d~~tL~~y~---i~~~~~i~l~~~ 224 (381)
.+-|+.+.||+++...|.++.++++++-.++|.+..+ ..+.++++.. -..+..+++...
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 3457788999999999999999988765455554444 4455555432 123456666654
No 383
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=23.99 E-value=1.9e+02 Score=20.19 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=48.9
Q ss_pred EEEEecCCcHHHHHHhhhhccCCCcccceee-ecCccccCCccccccccccCceeeEEEEe
Q 016849 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (381)
Q Consensus 242 ~~~v~~~~tV~~Lk~~i~~~~~ip~~~q~L~-~~g~~l~d~~tl~~y~i~~~~tl~l~~~~ 301 (381)
.+.|.+......+-+-..+++.+|+.....+ -.|.-.+..+|-..--++.|+.|+|+++-
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRD 87 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRD 87 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECC
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccc
Confidence 3778888888888888888999988766655 56777888888888889999999998763
No 384
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=23.80 E-value=1.3e+02 Score=27.87 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=38.8
Q ss_pred eCCcEEEEEeeCcchHHHHHHHHH--hHhCC---CCCCeEEEEC----C--EEcCCCCcccc
Q 016849 312 LTGKTITLEVESSDTIDNVKAKIQ--DKEGI---PPDQQRLIFA----G--KQLEDGRTLAD 362 (381)
Q Consensus 312 ~~g~~~~~~v~~~~tV~~lK~~i~--~~~gi---~~~~q~L~~~----g--~~L~d~~~L~~ 362 (381)
++|....+.+++++||.++-..|+ .+.|+ .++.+-|.+. | .-|.++.+|.+
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 96 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGE 96 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHH
Confidence 789999999999999999999999 56675 3445555441 2 45677777776
No 385
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=23.49 E-value=1.5e+02 Score=25.66 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=35.2
Q ss_pred EEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCccceEEe
Q 016849 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (381)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~q~l~~ 45 (381)
|.|-..+|.+-++.|+++.|+.+|-+.+.++.+++.+...-++
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~ 79 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLY 79 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEE
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 3444678999999999999999999999999998776544444
No 386
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=23.18 E-value=83 Score=22.99 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=25.8
Q ss_pred EEEEEcCCCcEEEEEeecCccHHHHHHHHhhhcCCCCc
Q 016849 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (381)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~ 39 (381)
+|.|.+.+|+..++++.+.+|+.+.-.+ .||+..
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa~~----~gi~i~ 41 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVVVQ----NNLDID 41 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHH----TTCCCT
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHH----cCCCCC
Confidence 5778878999999999999999875433 455543
No 387
>4i3s_G Outer domain of HIV-1 GP120 (KER2018 OD4.2.2); antibody affinity, antibody specificity, binding sites, HIV infections, antibodies, HIV envelope protein GP120; 2.85A {Human immunodeficiency virus} PDB: 4i3r_G
Probab=22.23 E-value=1.7e+02 Score=24.10 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=52.8
Q ss_pred CcccceeeecCccccCCccccccccccCc-eeeEEEEeecCeeeEEEeeCCcEEEEEeeC---cchHHHHHHHHHhHh
Q 016849 265 PPDQQRLIFAGKQLEDGRTLADYNIQKES-TLHLVLRLRGGMQIFVKTLTGKTITLEVES---SDTIDNVKAKIQDKE 338 (381)
Q Consensus 265 p~~~q~L~~~g~~l~d~~tl~~y~i~~~~-tl~l~~~~~~~m~I~v~~~~g~~~~~~v~~---~~tV~~lK~~i~~~~ 338 (381)
|+-.-+|.++|...+++-.+++.++.+++ +|.+.+ +.+..|....++..+..-.++. +.|..++.+++.+.+
T Consensus 2 PvvSTqLlLNGSLAEeeiiIRSeNit~NaKtIIVqL--n~sV~InCtRP~NNTRhCnis~~~Wn~tL~~V~~kL~e~f 77 (190)
T 4i3s_G 2 PVVSTQLLLNGSLAEKEIRIKSEDISDNAKNIIVQL--TKPVLINCARPSNNTQYCVVNRTQWNDTLGQVAIQLRKHW 77 (190)
T ss_dssp CCCCCSEEESSCCCSSSCEEECSCTTCTTSCEEEEE--EEEEEEEEEECSSSCCEEEECHHHHHHHHHHHHHHHTTTS
T ss_pred CEEechhhhehhhcCCceEEEEeccCCCceEEEEEc--CCceEEEEEecCCCeEEEEEeHHHhhhhHHHHHHHHHHhc
Confidence 55566788999988888888888888776 444443 3457787777887777677765 568888888887765
No 388
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=22.18 E-value=1.5e+02 Score=29.74 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=39.9
Q ss_pred CCeEEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCC-CeEEEE
Q 016849 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF 121 (381)
Q Consensus 75 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~ 121 (381)
..+.+.|...+|....+.+.+..|+.++-+.+..+.|+... .--|.+
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 56889999999999999999999999999999999997653 344544
No 389
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=21.57 E-value=64 Score=27.74 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=56.9
Q ss_pred cccccccCceeeEEEEeecCeeeEEEeeCCcEEEEEeeCcchHHHHHHHHHhHhCCCCCCeEEEE-CCEEcCCCCcc---
Q 016849 285 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTL--- 360 (381)
Q Consensus 285 ~~y~i~~~~tl~l~~~~~~~m~I~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~-~g~~L~d~~~L--- 360 (381)
.+.-+++|++|++=.+ +-.|.|...-.....+...++.++.+--...--..+=..+...+++ +|.........
T Consensus 111 ~n~~L~~gd~L~iP~r---~~tV~V~G~V~~p~~v~~~~g~~~~dYi~~agg~~~Ad~~~v~VI~~nG~v~~~~~a~Wn~ 187 (236)
T 3p42_A 111 SNPPLVGDYTLYTVQR---PVTITLLGAVSGAGQLPWLAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNK 187 (236)
T ss_dssp GSCBCCEEEEEECCCC---CSEEEEEESBTTCEEEECCTTCCHHHHHTTSCBCTTBCSSEEEEECTTSCEEEEECSSTTC
T ss_pred CCCccCCCCEEEECCC---CCEEEEEeecCCcCeEeecCCCCHHHHHHhCCCCCCCCCccEEEEeCCCCEEecccccccc
Confidence 4445889998866433 3467777766667788888999987765443322233344555665 78865433222
Q ss_pred cccCCCCCCEEEEEEe
Q 016849 361 ADYNIQKESTLHLVLR 376 (381)
Q Consensus 361 ~~~~i~~~~~i~l~~~ 376 (381)
....+.+||+|.+=++
T Consensus 188 ~~~~l~PG~~I~Vp~~ 203 (236)
T 3p42_A 188 RHVEPPPGSQLWLGFS 203 (236)
T ss_dssp CCEECCTTCEEEECBC
T ss_pred CCCCCCCCCEEEEeCC
Confidence 2456999999987554
No 390
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=21.08 E-value=1.7e+02 Score=21.07 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=33.8
Q ss_pred CcEEEEEeecCccHHHHHHHHhhhcCCCCcc-ceEEecCee
Q 016849 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQ 49 (381)
Q Consensus 10 g~~~~~~v~~~dtv~~~K~~i~~~~~ip~~~-q~l~~~g~~ 49 (381)
.++++|.|++..|=.+||+.|++.+|+.+.. ..+...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 3689999999999999999999999998766 666666653
No 391
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=20.81 E-value=1.2e+02 Score=20.87 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=23.4
Q ss_pred CcccccccCCCCEEEEEEeeccceeeeEEeccCcEEE
Q 016849 206 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 242 (381)
Q Consensus 206 ~tL~~y~i~~~~~i~l~~~~~~~~~i~vk~~~g~~~~ 242 (381)
+-|.+.|+.+|+.|.+.-+.+.+-++.++. +|..+.
T Consensus 26 ~rL~~lGl~pG~~v~V~~~~p~~gpi~v~v-~g~~ia 61 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYIRKVAPLGDPIQINV-RGYELS 61 (81)
T ss_dssp HHHHHHTCCTTCEEEEEEECTTSCCEEEEE-TTEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEEE
Confidence 457788999999999887765443443433 444433
No 392
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=20.57 E-value=2.2e+02 Score=24.72 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=37.7
Q ss_pred EEEEEccCCcEEEEEEeCCCCHHHHHHHHHhHhCCCCCCeEEEEc-------CeeccCCCcccc
Q 016849 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD 134 (381)
Q Consensus 78 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-------g~~L~d~~tl~~ 134 (381)
-|.|-..+|...++.|++++|+++|-..+..+.+.+...-..++. .|.|+|...+-+
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHH
Confidence 456667889999999999999999999988877655433333322 377777765554
Done!