BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016850
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 128/310 (41%), Gaps = 51/310 (16%)
Query: 81 HIYHLSEICAATNNFLAK-------KFTXXXXXXXWRGTIRGKDVIIFQRKLRRSLDL-- 131
H + E+ TNNF + K ++G + V + +KL +D+
Sbjct: 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAV--KKLAAMVDITT 70
Query: 132 ----EQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLAD---CLRN---- 180
+Q + + V+ + H +L++LLG G+ LVY ++ +L D CL
Sbjct: 71 EELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPL 130
Query: 181 ------------PRNPSFTVLSTWLSR-MQSSSIIVSEENAGSLCAKICHFGTAELCGEV 227
+F + + R ++S++I++ E + AKI FG A +
Sbjct: 131 SWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDE----AFTAKISDFGLARASEKF 186
Query: 228 SGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXXXXXXXXXXKFVFDEGID 287
+ ++ ++I GT YMAPE G +T K D+Y+F +D
Sbjct: 187 A--QTVMXSRIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEIITGL--------PAVD 235
Query: 288 GYRRVSVVDKASEXXXXXXXXXRKWVDRRLKDSYPVEVAEKMVLLGLQCVDEDPGKRPDM 347
+R ++ E ++D+++ D+ V E M + QC+ E KRPD+
Sbjct: 236 EHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSV-EAMYSVASQCLHEKKNKRPDI 294
Query: 348 RQVTGLVSKM 357
++V L+ +M
Sbjct: 295 KKVQQLLQEM 304
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 127/310 (40%), Gaps = 51/310 (16%)
Query: 81 HIYHLSEICAATNNFLAK-------KFTXXXXXXXWRGTIRGKDVIIFQRKLRRSLDL-- 131
H + E+ TNNF + K ++G + V + +KL +D+
Sbjct: 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAV--KKLAAMVDITT 70
Query: 132 ----EQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLAD---CLRN---- 180
+Q + + V+ + H +L++LLG G+ LVY ++ +L D CL
Sbjct: 71 EELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPL 130
Query: 181 ------------PRNPSFTVLSTWLSR-MQSSSIIVSEENAGSLCAKICHFGTAELCGEV 227
+F + + R ++S++I++ E + AKI FG A +
Sbjct: 131 SWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDE----AFTAKISDFGLARASEKF 186
Query: 228 SGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXXXXXXXXXXKFVFDEGID 287
+ ++ +I GT YMAPE G +T K D+Y+F +D
Sbjct: 187 A--QTVMXXRIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEIITGL--------PAVD 235
Query: 288 GYRRVSVVDKASEXXXXXXXXXRKWVDRRLKDSYPVEVAEKMVLLGLQCVDEDPGKRPDM 347
+R ++ E ++D+++ D+ V E M + QC+ E KRPD+
Sbjct: 236 EHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSV-EAMYSVASQCLHEKKNKRPDI 294
Query: 348 RQVTGLVSKM 357
++V L+ +M
Sbjct: 295 KKVQQLLQEM 304
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 126/310 (40%), Gaps = 51/310 (16%)
Query: 81 HIYHLSEICAATNNFLAK-------KFTXXXXXXXWRGTIRGKDVIIFQRKLRRSLDL-- 131
H + E+ TNNF + K ++G + V + +KL +D+
Sbjct: 7 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAV--KKLAAMVDITT 64
Query: 132 ----EQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLAD---CLRN---- 180
+Q + + V+ + H +L++LLG G+ LVY ++ +L D CL
Sbjct: 65 EELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPL 124
Query: 181 ------------PRNPSFTVLSTWLSR-MQSSSIIVSEENAGSLCAKICHFGTAELCGEV 227
+F + + R ++S++I++ E + AKI FG A +
Sbjct: 125 SWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDE----AFTAKISDFGLARASEKF 180
Query: 228 SGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXXXXXXXXXXKFVFDEGID 287
+ + +I GT YMAPE G +T K D+Y+F +D
Sbjct: 181 A--QXVMXXRIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEIITGL--------PAVD 229
Query: 288 GYRRVSVVDKASEXXXXXXXXXRKWVDRRLKDSYPVEVAEKMVLLGLQCVDEDPGKRPDM 347
+R ++ E ++D+++ D+ V E M + QC+ E KRPD+
Sbjct: 230 EHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSV-EAMYSVASQCLHEKKNKRPDI 288
Query: 348 RQVTGLVSKM 357
++V L+ +M
Sbjct: 289 KKVQQLLQEM 298
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/333 (20%), Positives = 131/333 (39%), Gaps = 63/333 (18%)
Query: 83 YHLSEICAATNNFLAKK-FTXXXXXXXWRGTIRGKDVIIFQR-KLRRSLDLE-QLRERLS 139
+ L E+ A++NF K ++G + ++ +R K R E Q + +
Sbjct: 28 FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVE 87
Query: 140 VICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNPSFTVLSTWLSR---- 195
+I + H +L++L G C++ LVY +++ ++A CLR P W R
Sbjct: 88 MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRE--RPESQPPLDWPKRQRIA 145
Query: 196 ----------------------MQSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNESG 233
+++++I++ EE A + FG A+L + +
Sbjct: 146 LGSARGLAYLHDHCDPKIIHRDVKAANILLDEE----FEAVVGDFGLAKL---MDYKDXH 198
Query: 234 KVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXXXXXXXXXXKFVFDEGIDGYRRVS 293
+ GT G++APE+ ++G ++K DV+ + + E I G R
Sbjct: 199 VXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYG--------------VMLLELITGQRAFD 244
Query: 294 VVDKASEXXXX---------XXXXXRKWVDRRLKDSYPVEVAEKMVLLGLQCVDEDPGKR 344
+ A++ VD L+ +Y E E+++ + L C P +R
Sbjct: 245 LARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMER 304
Query: 345 PDMRQVTGLVSKMYLESK--NWADKIGFPTDFS 375
P M +V ++ L + W + F DF+
Sbjct: 305 PKMSEVVRMLEGDGLAERWEEWQKEEMFRQDFN 337
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 119/287 (41%), Gaps = 60/287 (20%)
Query: 114 RGKDVIIFQ--RKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSG 171
R KDV I Q + R + +LR+ + R +H +++KL GAC++ C LV E+ G
Sbjct: 31 RAKDVAIKQIESESERKAFIVELRQ----LSRVNHPNIVKLYGACLNPVC--LVMEYAEG 84
Query: 172 ANLADCLRNPRN-PSFTVLS------------TWLSRMQSSSII---VSEEN----AGSL 211
+L + L P +T +L MQ ++I + N AG
Sbjct: 85 GSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGT 144
Query: 212 CAKICHFGTA-ELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXX 270
KIC FGTA ++ ++ N +G+ +MAPE ++KCDV+++
Sbjct: 145 VLKICDFGTACDIQTHMTNN--------KGSAAWMAPEVFEGSNYSEKCDVFSW----GI 192
Query: 271 XXXXXXXXKFVFDE-GIDGYRRVSVVDKASEXXXXXXXXXRKWVDRRLKDSYPVEVAEKM 329
+ FDE G +R + V + R + + L P+E
Sbjct: 193 ILWEVITRRKPFDEIGGPAFRIMWAVHNGT----------RPPLIKNLPK--PIES---- 236
Query: 330 VLLGLQCVDEDPGKRPDMRQVTGLVSKMYLESKNWADKIGFPTDFSV 376
L +C +DP +RP M ++ +++ + + + +P S+
Sbjct: 237 --LMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGADEPLQYPCQHSL 281
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 119/287 (41%), Gaps = 60/287 (20%)
Query: 114 RGKDVIIFQ--RKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSG 171
R KDV I Q + R + +LR+ + R +H +++KL GAC++ C LV E+ G
Sbjct: 30 RAKDVAIKQIESESERKAFIVELRQ----LSRVNHPNIVKLYGACLNPVC--LVMEYAEG 83
Query: 172 ANLADCLRNPRN-PSFTVLS------------TWLSRMQSSSII---VSEEN----AGSL 211
+L + L P +T +L MQ ++I + N AG
Sbjct: 84 GSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGT 143
Query: 212 CAKICHFGTA-ELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXX 270
KIC FGTA ++ ++ N +G+ +MAPE ++KCDV+++
Sbjct: 144 VLKICDFGTACDIQTHMTNN--------KGSAAWMAPEVFEGSNYSEKCDVFSW----GI 191
Query: 271 XXXXXXXXKFVFDE-GIDGYRRVSVVDKASEXXXXXXXXXRKWVDRRLKDSYPVEVAEKM 329
+ FDE G +R + V + R + + L P+E
Sbjct: 192 ILWEVITRRKPFDEIGGPAFRIMWAVHNGT----------RPPLIKNLPK--PIES---- 235
Query: 330 VLLGLQCVDEDPGKRPDMRQVTGLVSKMYLESKNWADKIGFPTDFSV 376
L +C +DP +RP M ++ +++ + + + +P S+
Sbjct: 236 --LMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGADEPLQYPCQHSL 280
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 121/309 (39%), Gaps = 51/309 (16%)
Query: 81 HIYHLSEICAATNNFLAKKFTXXXXX-------XXWRGTIRGKDVIIFQRKLRRSLDL-- 131
H + E+ TNNF + + ++G + V + +KL +D+
Sbjct: 4 HSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAV--KKLAAMVDITT 61
Query: 132 ----EQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLAD---CLRN---- 180
+Q + + V + H +L++LLG G+ LVY + +L D CL
Sbjct: 62 EELKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPL 121
Query: 181 ------------PRNPSFTVLSTWLSR-MQSSSIIVSEENAGSLCAKICHFGTAELCGEV 227
+F + + R ++S++I++ E + AKI FG A +
Sbjct: 122 SWHXRCKIAQGAANGINFLHENHHIHRDIKSANILLDE----AFTAKISDFGLARASEKF 177
Query: 228 SGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXXXXXXXXXXKFVFDEGID 287
+ + ++I GT Y APE G +T K D+Y+F +D
Sbjct: 178 A--QXVXXSRIVGTTAYXAPE-ALRGEITPKSDIYSFGVVLLEIITGL--------PAVD 226
Query: 288 GYRRVSVVDKASEXXXXXXXXXRKWVDRRLKDSYPVEVAEKMVLLGLQCVDEDPGKRPDM 347
+R ++ E ++D++ D+ V E + QC+ E KRPD+
Sbjct: 227 EHREPQLLLDIKEEIEDEEKTIEDYIDKKXNDADSTSV-EAXYSVASQCLHEKKNKRPDI 285
Query: 348 RQVTGLVSK 356
++V L+ +
Sbjct: 286 KKVQQLLQE 294
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 123/311 (39%), Gaps = 61/311 (19%)
Query: 83 YHLSEICAATNNFLAKK-FTXXXXXXXWRGTIRGKDVIIFQR-KLRRSLDLE-QLRERLS 139
+ L E+ A++NF K ++G + ++ +R K R+ E Q + +
Sbjct: 20 FSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTEVE 79
Query: 140 VICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNPSFTVLSTWLSR---- 195
+I + H +L++L G C++ LVY +++ ++A CLR P W R
Sbjct: 80 MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRE--RPESQPPLDWPKRQRIA 137
Query: 196 ----------------------MQSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNESG 233
+++++I++ EE A + FG A+L + +
Sbjct: 138 LGSARGLAYLHDHCDPKIIHRDVKAANILLDEE----FEAVVGDFGLAKL---MDYKDXH 190
Query: 234 KVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXXXXXXXXXXKFVFDEGIDGYRRVS 293
+ G G++APE+ ++G ++K DV+ + + E I G R
Sbjct: 191 VXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYG--------------VMLLELITGQRAFD 236
Query: 294 VVDKASEXXXX---------XXXXXRKWVDRRLKDSYPVEVAEKMVLLGLQCVDEDPGKR 344
+ A++ VD L+ +Y E E+++ + L C P +R
Sbjct: 237 LARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMER 296
Query: 345 PDMRQVTGLVS 355
P M +V ++
Sbjct: 297 PKMSEVVRMLE 307
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 31/204 (15%)
Query: 85 LSEICAATNNFLAKKFTXXXXX-XXWRGTIR-GKDVIIFQRKLRRSLDLEQLRERLSVIC 142
L ++ ATNNF K ++G +R G V + +R S +E+ + +
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 143 RSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNPSFTVLSTWLSRMQ----- 197
H L+ L+G C N L+Y+++ NL L P+ ++ +W R++
Sbjct: 91 FCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSM--SWEQRLEICIGA 148
Query: 198 -----------------SSSIIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVNKIEG 240
S I+ +EN KI FG ++ E+ V ++G
Sbjct: 149 ARGLHYLHTRAIIHRDVKSINILLDEN---FVPKITDFGISKKGTELDQTHLXXV--VKG 203
Query: 241 TRGYMAPEFQASGVVTQKCDVYAF 264
T GY+ PE+ G +T+K DVY+F
Sbjct: 204 TLGYIDPEYFIKGRLTEKSDVYSF 227
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 37/207 (17%)
Query: 85 LSEICAATNNFLAKKFTXXXXX-XXWRGTIR-GKDVIIFQRKLRRSLDLEQLRERLSVIC 142
L ++ ATNNF K ++G +R G V + +R S +E+ + +
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 143 RSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNPSFTVLSTWLSRMQ----- 197
H L+ L+G C N L+Y+++ NL L P+ ++ +W R++
Sbjct: 91 FCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSM--SWEQRLEICIGA 148
Query: 198 -----------------SSSIIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVNK--- 237
S I+ +EN KI FG ++ G E G+ +
Sbjct: 149 ARGLHYLHTRAIIHRDVKSINILLDEN---FVPKITDFGISK-----KGTELGQTHLXXV 200
Query: 238 IEGTRGYMAPEFQASGVVTQKCDVYAF 264
++GT GY+ PE+ G +T+K DVY+F
Sbjct: 201 VKGTLGYIDPEYFIKGRLTEKSDVYSF 227
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 138 LSVICR-SHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPR----NPSFTVLSTW 192
L V+C+ HH ++I LLGAC YL E+ NL D LR R +P+F + ++
Sbjct: 76 LEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANST 135
Query: 193 LSRMQSSSII 202
S + S ++
Sbjct: 136 ASTLSSQQLL 145
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 138 LSVICR-SHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPR----NPSFTVLSTW 192
L V+C+ HH ++I LLGAC YL E+ NL D LR R +P+F + ++
Sbjct: 66 LEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANST 125
Query: 193 LSRMQSSSII 202
S + S ++
Sbjct: 126 ASTLSSQQLL 135
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 138 LSVICR-SHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPR----NPSFTVLSTW 192
L V+C+ HH ++I LLGAC YL E+ NL D LR R +P+F + ++
Sbjct: 73 LEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANST 132
Query: 193 LSRMQSSSII 202
S + S ++
Sbjct: 133 ASTLSSQQLL 142
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 42/250 (16%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + S
Sbjct: 48 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVS 107
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 108 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAH 167
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXXXXXXXXXXKFVFDEGIDGYRR 291
+G I+ T APE A + K DV+AF GID +
Sbjct: 168 AGAKFPIKWT----APESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY----PGIDPSQV 219
Query: 292 VSVVDKASEXXXXXXXXXRKWVDRRLKDSYPVEVAEKMVLLGLQCVDEDPGKRPDMRQVT 351
+++K D R++ P EK+ L C +P RP ++
Sbjct: 220 YELLEK----------------DYRMER--PEGCPEKVYELMRACWQWNPSDRPSFAEIH 261
Query: 352 GLVSKMYLES 361
M+ ES
Sbjct: 262 QAFETMFQES 271
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + S
Sbjct: 48 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVS 107
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 108 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAH 167
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 168 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 196
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + S
Sbjct: 50 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVS 109
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 110 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 169
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 170 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 198
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + S
Sbjct: 50 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVS 109
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 110 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 169
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 170 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 198
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + S
Sbjct: 50 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVS 109
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 110 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 169
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 170 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 198
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + S
Sbjct: 55 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVS 114
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 115 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 174
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 175 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 203
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + S
Sbjct: 50 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVS 109
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 110 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 169
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 170 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 198
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y+V E++ NL D LR N +
Sbjct: 69 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVT 128
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 129 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAH 188
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 189 AGAKFPIKWT----APESLAYNTFSIKSDVWAF 217
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + S
Sbjct: 48 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVS 107
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 108 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAH 167
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 168 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 196
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 55 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVN 114
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 115 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 174
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 175 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 203
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 51 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVN 110
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 111 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAH 170
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 171 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 199
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 55 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVN 114
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 115 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAH 174
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 175 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 203
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 50 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVN 109
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 110 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 169
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 170 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 198
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 55 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVN 114
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 115 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 174
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 175 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 203
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 54 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVN 113
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 114 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 173
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 174 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 202
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 50 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVN 109
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 110 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 169
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 170 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 198
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 63 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVN 122
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 123 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 182
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 183 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 211
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 52 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVN 111
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 112 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 171
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 172 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 200
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 55 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVN 114
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 115 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 174
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 175 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 203
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 52 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVN 111
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 112 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 171
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 172 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 200
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 51 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVN 110
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 111 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAP 170
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 171 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 199
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 52 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVN 111
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 112 AVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAP 171
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 172 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 200
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + S
Sbjct: 257 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVS 316
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 317 AVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 376
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 377 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 405
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 254 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVN 313
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 314 AVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 373
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 374 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 402
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 128 SLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR--NPRNPS 185
++++E+ + +V+ H +L++LLG C Y++ E ++ NL D LR N + +
Sbjct: 296 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVN 355
Query: 186 FTVLSTWLSRMQSSSIIVSEEN------AGSLC-------AKICHFGTAEL-CGEVSGNE 231
VL +++ S+ + ++N A C K+ FG + L G+
Sbjct: 356 AVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 415
Query: 232 SGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+G I+ T APE A + K DV+AF
Sbjct: 416 AGAKFPIKWT----APESLAYNKFSIKSDVWAF 444
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 158 SGNCGYLVYEHVSGANLADCLRN--PRNP--------------SFTVLSTWLSR-MQSSS 200
+G Y+V E+V G L D + P P +F+ + + R ++ ++
Sbjct: 87 AGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPAN 146
Query: 201 IIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCD 260
I++S NA K+ FG A + SGN + + GT Y++PE V + D
Sbjct: 147 ILISATNA----VKVVDFGIARAIAD-SGNSVXQTAAVIGTAQYLSPEQARGDSVDARSD 201
Query: 261 VYAF 264
VY+
Sbjct: 202 VYSL 205
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP----- 184
DL E + +I + H ++I LLGAC Y++ E+ S NL + LR R P
Sbjct: 86 DLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYS 143
Query: 185 -----------SFTVL---STWLSR--------------MQSSSIIVSEENAGSLCAKIC 216
+F L + L+R + + +++V+E N KI
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN----VMKIA 199
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE V T + DV++F
Sbjct: 200 DFGLARDINNIDXXKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 245
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP----- 184
DL E + +I + H ++I LLGAC Y++ E+ S NL + LR R P
Sbjct: 86 DLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEXS 143
Query: 185 -----------SFTVL---STWLSR--------------MQSSSIIVSEENAGSLCAKIC 216
+F L + L+R + + +++V+E N KI
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN----VMKIA 199
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE V T + DV++F
Sbjct: 200 DFGLARDINNIDXXKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 245
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 158 SGNCGYLVYEHVSGANLADCLRN--PRNP--------------SFTVLSTWLSR-MQSSS 200
+G Y+V E+V G L D + P P +F+ + + R ++ ++
Sbjct: 104 AGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPAN 163
Query: 201 IIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCD 260
I++S NA K+ FG A + SGN + + GT Y++PE V + D
Sbjct: 164 IMISATNA----VKVMDFGIARAIAD-SGNSVTQTAAVIGTAQYLSPEQARGDSVDARSD 218
Query: 261 VYAF 264
VY+
Sbjct: 219 VYSL 222
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 158 SGNCGYLVYEHVSGANLADCLRN--PRNP--------------SFTVLSTWLSR-MQSSS 200
+G Y+V E+V G L D + P P +F+ + + R ++ ++
Sbjct: 87 AGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPAN 146
Query: 201 IIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCD 260
I++S NA K+ FG A + SGN + + GT Y++PE V + D
Sbjct: 147 IMISATNA----VKVMDFGIARAIAD-SGNSVTQTAAVIGTAQYLSPEQARGDSVDARSD 201
Query: 261 VYAF 264
VY+
Sbjct: 202 VYSL 205
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 158 SGNCGYLVYEHVSGANLADCLRN--PRNP--------------SFTVLSTWLSR-MQSSS 200
+G Y+V E+V G L D + P P +F+ + + R ++ ++
Sbjct: 87 AGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPAN 146
Query: 201 IIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCD 260
I++S NA K+ FG A + SGN + + GT Y++PE V + D
Sbjct: 147 IMISATNA----VKVMDFGIARAIAD-SGNSVTQTAAVIGTAQYLSPEQARGDSVDARSD 201
Query: 261 VYAF 264
VY+
Sbjct: 202 VYSL 205
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 158 SGNCGYLVYEHVSGANLADCLRN--PRNP--------------SFTVLSTWLSR-MQSSS 200
+G Y+V E+V G L D + P P +F+ + + R ++ ++
Sbjct: 87 AGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPAN 146
Query: 201 IIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCD 260
I++S NA K+ FG A + SGN + + GT Y++PE V + D
Sbjct: 147 IMISATNA----VKVMDFGIARAIAD-SGNSVTQTAAVIGTAQYLSPEQARGDSVDARSD 201
Query: 261 VYAF 264
VY+
Sbjct: 202 VYSL 205
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP----- 184
DL E + +I + H ++I LLGAC Y++ E+ S NL + LR R P
Sbjct: 86 DLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYS 143
Query: 185 -----------SFTVL---STWLSR--------------MQSSSIIVSEENAGSLCAKIC 216
+F L + L+R + + +++V+E N KI
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN----VMKIA 199
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + ++ ++ +MAPE V T + DV++F
Sbjct: 200 DFGLARDINNIDYYKNTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 245
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 158 SGNCGYLVYEHVSGANLADCLRN--PRNP--------------SFTVLSTWLSR-MQSSS 200
+G Y+V E+V G L D + P P +F+ + + R ++ ++
Sbjct: 87 AGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPAN 146
Query: 201 IIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCD 260
I++S NA K+ FG A + SGN + + GT Y++PE V + D
Sbjct: 147 IMISATNA----VKVMDFGIARAIAD-SGNSVTQTAAVIGTAQYLSPEQARGDSVDARSD 201
Query: 261 VYAF 264
VY+
Sbjct: 202 VYSL 205
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP----- 184
DL E + +I + H ++I LLGAC Y++ E+ S NL + LR R P
Sbjct: 86 DLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYS 143
Query: 185 -----------SFTVL---STWLSR--------------MQSSSIIVSEENAGSLCAKIC 216
+F L + L+R + + +++V+E N KI
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN----VMKIA 199
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE V T + DV++F
Sbjct: 200 DFGLARDINNIDYYKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 245
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP----- 184
DL E + +I + H ++I LLGAC Y++ E+ S NL + LR R P
Sbjct: 132 DLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYS 189
Query: 185 -----------SFTVL---STWLSR--------------MQSSSIIVSEENAGSLCAKIC 216
+F L + L+R + + +++V+E N KI
Sbjct: 190 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN----VMKIA 245
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE V T + DV++F
Sbjct: 246 DFGLARDINNIDYYKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 291
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP----- 184
DL E + +I + H ++I LLGAC Y++ E+ S NL + LR R P
Sbjct: 86 DLVSEMEMMKMIGK--HKNIIHLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYS 143
Query: 185 -----------SFTVL---STWLSR--------------MQSSSIIVSEENAGSLCAKIC 216
+F L + L+R + + +++V+E N KI
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN----VMKIA 199
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE V T + DV++F
Sbjct: 200 DFGLARDINNIDYYKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 245
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 16/162 (9%)
Query: 115 GKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANL 174
GK V + + LR+ E L + ++ HH +++ + + + G+ ++V E + G L
Sbjct: 70 GKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYSSYLVGDELWVVMEFLEGGAL 129
Query: 175 ADCLRNPRNPSFTVLSTWLSRMQSSS------IIVSEENAGSLC------AKICHFGTAE 222
D + + R + + LS +++ S +I + + S+ K+ FG
Sbjct: 130 TDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFG--- 186
Query: 223 LCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
C +VS E K + GT +MAPE + + D+++
Sbjct: 187 FCAQVS-KEVPKRKXLVGTPYWMAPEVISRLPYGTEVDIWSL 227
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP----- 184
DL E + +I + H ++I LLGAC Y++ E+ S NL + LR R P
Sbjct: 86 DLVSEMEMMKMIGK--HKNIITLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYS 143
Query: 185 -----------SFTVL---STWLSR--------------MQSSSIIVSEENAGSLCAKIC 216
+F L + L+R + + +++V+E N KI
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN----VMKIA 199
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE V T + DV++F
Sbjct: 200 DFGLARDINNIDYYKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 245
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP----- 184
DL E + +I + H ++I LLGAC Y++ E+ S NL + LR R P
Sbjct: 73 DLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYS 130
Query: 185 -----------SFTVL---STWLSR--------------MQSSSIIVSEENAGSLCAKIC 216
+F L + L+R + + +++V+E N KI
Sbjct: 131 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLTARNVLVTENNV----MKIA 186
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE V T + DV++F
Sbjct: 187 DFGLARDINNIDYYKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 232
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP----- 184
DL E + +I + H ++I LLGAC Y++ E+ S NL + LR R P
Sbjct: 78 DLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYS 135
Query: 185 -----------SFTVL---STWLSR--------------MQSSSIIVSEENAGSLCAKIC 216
+F L + L+R + + +++V+E N KI
Sbjct: 136 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN----VMKIA 191
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE V T + DV++F
Sbjct: 192 DFGLARDINNIDYYKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 237
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP----- 184
DL E + +I + H ++I LLGAC Y++ E+ S NL + LR R P
Sbjct: 75 DLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYS 132
Query: 185 -----------SFTVL---STWLSR--------------MQSSSIIVSEENAGSLCAKIC 216
+F L + L+R + + +++V+E N KI
Sbjct: 133 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN----VMKIA 188
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE V T + DV++F
Sbjct: 189 DFGLARDINNIDYYKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 234
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 96/269 (35%), Gaps = 65/269 (24%)
Query: 132 EQLRERLSVICR-SHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP------ 184
E L L V+ +H +++ LLGAC G ++ E+ +L + LR R+
Sbjct: 94 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKT 153
Query: 185 ------------------SFTV-LSTWLSRMQSSSIIVSEENAGSL------CAKICHFG 219
SF+ ++ ++ + S + I + A ++ KIC FG
Sbjct: 154 SPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFG 213
Query: 220 TAELCGE-----VSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXXXXXX 274
A V GN V +MAPE + V T + DV+++
Sbjct: 214 LARHIKNDSNYVVKGNARLPVK-------WMAPESIFNCVYTFESDVWSYGIFLWE---- 262
Query: 275 XXXXKFVFDEGIDGYRRVSVVDKASEXXXXXXXXXRKWVDRRLKDSYPVEVAEKMVLLGL 334
+F G Y + V K K + + P +M +
Sbjct: 263 ------LFSLGSSPYPGMPVDSK-----------FYKMIKEGFRMLSPEHAPAEMYDIMK 305
Query: 335 QCVDEDPGKRPDMRQVTGLVSKMYLESKN 363
C D DP KRP +Q+ L+ K ES N
Sbjct: 306 TCWDADPLKRPTFKQIVQLIEKQISESTN 334
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP----- 184
DL E + +I + H ++I LLGAC Y++ E+ S NL + LR R P
Sbjct: 86 DLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYS 143
Query: 185 -----------SFTVL---STWLSR--------------MQSSSIIVSEENAGSLCAKIC 216
+F L + L+R + + +++V+E N +I
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN----VMRIA 199
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE V T + DV++F
Sbjct: 200 DFGLARDINNIDYYKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 245
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 96/269 (35%), Gaps = 65/269 (24%)
Query: 132 EQLRERLSVICR-SHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP------ 184
E L L V+ +H +++ LLGAC G ++ E+ +L + LR R+
Sbjct: 71 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKT 130
Query: 185 ------------------SFTV-LSTWLSRMQSSSIIVSEENAGSL------CAKICHFG 219
SF+ ++ ++ + S + I + A ++ KIC FG
Sbjct: 131 SPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFG 190
Query: 220 TAELCGE-----VSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXXXXXX 274
A V GN V +MAPE + V T + DV+++
Sbjct: 191 LARDIKNDSNYVVKGNARLPVK-------WMAPESIFNCVYTFESDVWSYGIFLWE---- 239
Query: 275 XXXXKFVFDEGIDGYRRVSVVDKASEXXXXXXXXXRKWVDRRLKDSYPVEVAEKMVLLGL 334
+F G Y + V K K + + P +M +
Sbjct: 240 ------LFSLGSSPYPGMPVDSK-----------FYKMIKEGFRMLSPEHAPAEMYDIMK 282
Query: 335 QCVDEDPGKRPDMRQVTGLVSKMYLESKN 363
C D DP KRP +Q+ L+ K ES N
Sbjct: 283 TCWDADPLKRPTFKQIVQLIEKQISESTN 311
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 96/269 (35%), Gaps = 65/269 (24%)
Query: 132 EQLRERLSVICR-SHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP------ 184
E L L V+ +H +++ LLGAC G ++ E+ +L + LR R+
Sbjct: 89 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKT 148
Query: 185 ------------------SFTV-LSTWLSRMQSSSIIVSEENAGSLC------AKICHFG 219
SF+ ++ ++ + S + I + A ++ KIC FG
Sbjct: 149 SPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFG 208
Query: 220 TAELCGE-----VSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXXXXXX 274
A V GN V +MAPE + V T + DV+++
Sbjct: 209 LARDIKNDSNYVVKGNARLPVK-------WMAPESIFNCVYTFESDVWSYGIFLWE---- 257
Query: 275 XXXXKFVFDEGIDGYRRVSVVDKASEXXXXXXXXXRKWVDRRLKDSYPVEVAEKMVLLGL 334
+F G Y + V K K + + P +M +
Sbjct: 258 ------LFSLGSSPYPGMPVDSK-----------FYKMIKEGFRMLSPEHAPAEMYDIMK 300
Query: 335 QCVDEDPGKRPDMRQVTGLVSKMYLESKN 363
C D DP KRP +Q+ L+ K ES N
Sbjct: 301 TCWDADPLKRPTFKQIVQLIEKQISESTN 329
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 96/269 (35%), Gaps = 65/269 (24%)
Query: 132 EQLRERLSVICR-SHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP------ 184
E L L V+ +H +++ LLGAC G ++ E+ +L + LR R+
Sbjct: 87 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKT 146
Query: 185 ------------------SFTV-LSTWLSRMQSSSIIVSEENAGSL------CAKICHFG 219
SF+ ++ ++ + S + I + A ++ KIC FG
Sbjct: 147 SPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFG 206
Query: 220 TAELCGE-----VSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXXXXXX 274
A V GN V +MAPE + V T + DV+++
Sbjct: 207 LARDIKNDSNYVVKGNARLPVK-------WMAPESIFNCVYTFESDVWSYGIFLWE---- 255
Query: 275 XXXXKFVFDEGIDGYRRVSVVDKASEXXXXXXXXXRKWVDRRLKDSYPVEVAEKMVLLGL 334
+F G Y + V K K + + P +M +
Sbjct: 256 ------LFSLGSSPYPGMPVDSK-----------FYKMIKEGFRMLSPEHAPAEMYDIMK 298
Query: 335 QCVDEDPGKRPDMRQVTGLVSKMYLESKN 363
C D DP KRP +Q+ L+ K ES N
Sbjct: 299 TCWDADPLKRPTFKQIVQLIEKQISESTN 327
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 96/269 (35%), Gaps = 65/269 (24%)
Query: 132 EQLRERLSVICR-SHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP------ 184
E L L V+ +H +++ LLGAC G ++ E+ +L + LR R+
Sbjct: 94 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKT 153
Query: 185 ------------------SFTV-LSTWLSRMQSSSIIVSEENAGSL------CAKICHFG 219
SF+ ++ ++ + S + I + A ++ KIC FG
Sbjct: 154 SPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFG 213
Query: 220 TAELCGE-----VSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAFXXXXXXXXXX 274
A V GN V +MAPE + V T + DV+++
Sbjct: 214 LARDIKNDSNYVVKGNARLPVK-------WMAPESIFNCVYTFESDVWSYGIFLWE---- 262
Query: 275 XXXXKFVFDEGIDGYRRVSVVDKASEXXXXXXXXXRKWVDRRLKDSYPVEVAEKMVLLGL 334
+F G Y + V K K + + P +M +
Sbjct: 263 ------LFSLGSSPYPGMPVDSK-----------FYKMIKEGFRMLSPEHAPAEMYDIMK 305
Query: 335 QCVDEDPGKRPDMRQVTGLVSKMYLESKN 363
C D DP KRP +Q+ L+ K ES N
Sbjct: 306 TCWDADPLKRPTFKQIVQLIEKQISESTN 334
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 39/152 (25%)
Query: 146 HSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPR--------NPSFTVLSTWLSR-- 195
H ++I LLGAC Y++ E+ S NL + L+ R NPS S+
Sbjct: 93 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKDL 152
Query: 196 -----------------------MQSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNES 232
+ + +++V+E+N KI FG A + +
Sbjct: 153 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN----VMKIADFGLARDIHHIDXXKK 208
Query: 233 GKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
++ +MAPE + T + DV++F
Sbjct: 209 TTNGRL--PVKWMAPEALFDRIYTHQSDVWSF 238
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 35/175 (20%)
Query: 111 GTIRGKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCG-YLVYEHV 169
G RG V + + ++ + SV+ + HS+L++LLG V G Y+V E++
Sbjct: 31 GDYRGNKVAV--KCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 88
Query: 170 SGANLADCLRNPRNPS-------------------FTVLSTWLSR-MQSSSIIVSEENAG 209
+ +L D LR+ R S + + ++ R + + +++VSE+N
Sbjct: 89 AKGSLVDYLRS-RGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDN-- 145
Query: 210 SLCAKICHFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
AK+ FG + S ++GK+ + APE + K DV++F
Sbjct: 146 --VAKVSDFGLTKEAS--STQDTGKL-----PVKWTAPEALREAAFSTKSDVWSF 191
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 16/142 (11%)
Query: 135 RERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNPSFTVLSTW-- 192
++ ++V+ + S + K G+ + G+ +++ E++ G + D LR F + +
Sbjct: 69 QQEITVLSQCDSSYVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKE 128
Query: 193 ----LSRMQSSSIIVSEENAGSLC------AKICHFGTAELCGEVSGNESGKVNKIEGTR 242
L + S I + A ++ K+ FG A G+++ + K N GT
Sbjct: 129 ILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVA---GQLTDTQI-KRNTFVGTP 184
Query: 243 GYMAPEFQASGVVTQKCDVYAF 264
+MAPE K D+++
Sbjct: 185 FWMAPEVIQQSAYDSKADIWSL 206
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP----- 184
DL E + +I + H ++I LLGAC Y++ + S NL + LR R P
Sbjct: 86 DLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVAYASKGNLREYLRARRPPGMEYS 143
Query: 185 -----------SFTVL---STWLSR--------------MQSSSIIVSEENAGSLCAKIC 216
+F L + L+R + + +++V+E N KI
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN----VMKIA 199
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE V T + DV++F
Sbjct: 200 DFGLARDINNIDYYKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 245
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 39/152 (25%)
Query: 146 HSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPR--------NPSFTVLSTWLSR-- 195
H ++I LLGAC Y++ E+ S NL + L+ R NPS S+
Sbjct: 82 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 141
Query: 196 -----------------------MQSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNES 232
+ + +++V+E+N KI FG A + +
Sbjct: 142 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN----VMKIADFGLARDIHHIDYYKK 197
Query: 233 GKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
++ +MAPE + T + DV++F
Sbjct: 198 TTNGRL--PVKWMAPEALFDRIYTHQSDVWSF 227
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 39/152 (25%)
Query: 146 HSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPR--------NPSFTVLSTWLSR-- 195
H ++I LLGAC Y++ E+ S NL + L+ R NPS S+
Sbjct: 78 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDL 137
Query: 196 -----------------------MQSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNES 232
+ + +++V+E+N KI FG A + +
Sbjct: 138 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNV----MKIADFGLARDIHHIDYYKK 193
Query: 233 GKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
++ +MAPE + T + DV++F
Sbjct: 194 TTNGRL--PVKWMAPEALFDRIYTHQSDVWSF 223
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 39/152 (25%)
Query: 146 HSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPR--------NPSFTVLSTWLSR-- 195
H ++I LLGAC Y++ E+ S NL + L+ R NPS S+
Sbjct: 93 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDL 152
Query: 196 -----------------------MQSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNES 232
+ + +++V+E+N KI FG A + +
Sbjct: 153 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN----VMKIADFGLARDIHHIDYYKK 208
Query: 233 GKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
++ +MAPE + T + DV++F
Sbjct: 209 TTNGRL--PVKWMAPEALFDRIYTHQSDVWSF 238
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 39/152 (25%)
Query: 146 HSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPR--------NPSFTVLSTWLSR-- 195
H ++I LLGAC Y++ E+ S NL + L+ R NPS S+
Sbjct: 85 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 144
Query: 196 -----------------------MQSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNES 232
+ + +++V+E+N KI FG A + +
Sbjct: 145 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN----VMKIADFGLARDIHHIDYYKK 200
Query: 233 GKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
++ +MAPE + T + DV++F
Sbjct: 201 TTNGRL--PVKWMAPEALFDRIYTHQSDVWSF 230
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 39/152 (25%)
Query: 146 HSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPR--------NPSFTVLSTWLSR-- 195
H ++I LLGAC Y++ E+ S NL + L+ R NPS S+
Sbjct: 86 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 145
Query: 196 -----------------------MQSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNES 232
+ + +++V+E+N KI FG A + +
Sbjct: 146 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN----VMKIADFGLARDIHHIDYYKK 201
Query: 233 GKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
++ +MAPE + T + DV++F
Sbjct: 202 TTNGRL--PVKWMAPEALFDRIYTHQSDVWSF 231
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 39/152 (25%)
Query: 146 HSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPR--------NPSFTVLSTWLSR-- 195
H ++I LLGAC Y++ E+ S NL + L+ R NPS S+
Sbjct: 93 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 152
Query: 196 -----------------------MQSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNES 232
+ + +++V+E+N KI FG A + +
Sbjct: 153 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN----VMKIADFGLARDIHHIDYYKK 208
Query: 233 GKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
++ +MAPE + T + DV++F
Sbjct: 209 TTNGRL--PVKWMAPEALFDRIYTHQSDVWSF 238
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNP----- 184
DL E + +I + H ++I LLGAC Y++ + S NL + LR R P
Sbjct: 86 DLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVGYASKGNLREYLRARRPPGMEYS 143
Query: 185 -----------SFTVL---STWLSR--------------MQSSSIIVSEENAGSLCAKIC 216
+F L + L+R + + +++V+E N KI
Sbjct: 144 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN----VMKIA 199
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE V T + DV++F
Sbjct: 200 DFGLARDINNIDYYKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 245
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPR------- 182
DL E + +I + H ++I LLGAC Y++ E+ S NL + L+ R
Sbjct: 120 DLISEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYS 177
Query: 183 -NPSFTVLSTWLSR-------------------------MQSSSIIVSEENAGSLCAKIC 216
NPS S+ + + +++V+E+N KI
Sbjct: 178 YNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN----VMKIA 233
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE + T + DV++F
Sbjct: 234 DFGLARDIHHIDYYKKTTNGRL--PVKWMAPEALFDRIYTHQSDVWSF 279
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 35/175 (20%)
Query: 111 GTIRGKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCG-YLVYEHV 169
G RG V + + ++ + SV+ + HS+L++LLG V G Y+V E++
Sbjct: 40 GDYRGNKVAV--KCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 97
Query: 170 SGANLADCLRNPRNPS-------------------FTVLSTWLSR-MQSSSIIVSEENAG 209
+ +L D LR+ R S + + ++ R + + +++VSE+N
Sbjct: 98 AKGSLVDYLRS-RGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDN-- 154
Query: 210 SLCAKICHFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
AK+ FG + S ++GK+ + APE + K DV++F
Sbjct: 155 --VAKVSDFGLTKEAS--STQDTGKL-----PVKWTAPEALREKKFSTKSDVWSF 200
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 41/168 (24%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCL--RNP------ 181
DL E + +I + H ++I LLGAC Y++ E+ S NL + L R P
Sbjct: 79 DLISEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYS 136
Query: 182 RNPSFTVLSTWLSR-------------------------MQSSSIIVSEENAGSLCAKIC 216
NPS S+ + + +++V+E+N KI
Sbjct: 137 YNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN----VMKIA 192
Query: 217 HFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
FG A + + ++ +MAPE + T + DV++F
Sbjct: 193 DFGLARDIHHIDYYKKTTNGRL--PVKWMAPEALFDRIYTHQSDVWSF 238
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 35/175 (20%)
Query: 111 GTIRGKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCG-YLVYEHV 169
G RG V + + ++ + SV+ + HS+L++LLG V G Y+V E++
Sbjct: 25 GDYRGNKVAV--KCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 82
Query: 170 SGANLADCLRNPRNPS-------------------FTVLSTWLSR-MQSSSIIVSEENAG 209
+ +L D LR+ R S + + ++ R + + +++VSE+N
Sbjct: 83 AKGSLVDYLRS-RGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDN-- 139
Query: 210 SLCAKICHFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
AK+ FG + S ++GK+ + APE + K DV++F
Sbjct: 140 --VAKVSDFGLTKEAS--STQDTGKL-----PVKWTAPEALREKKFSTKSDVWSF 185
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 35/175 (20%)
Query: 111 GTIRGKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCG-YLVYEHV 169
G RG V + + ++ + SV+ + HS+L++LLG V G Y+V E++
Sbjct: 212 GDYRGNKVAV--KCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 269
Query: 170 SGANLADCLRNPRNPS-------------------FTVLSTWLSR-MQSSSIIVSEENAG 209
+ +L D LR+ R S + + ++ R + + +++VSE+N
Sbjct: 270 AKGSLVDYLRS-RGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNV- 327
Query: 210 SLCAKICHFGTAELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
AK+ FG + S ++GK+ + APE + K DV++F
Sbjct: 328 ---AKVSDFGLTKEAS--STQDTGKL-----PVKWTAPEALREKKFSTKSDVWSF 372
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 119 IIFQRKLRRSLDLEQLRERLSVICRS-HHSSLIKLLGACVSGNCGYLVYEHVSG------ 171
II +KL + D ++L ER + ICR H ++++L + + YLV++ V+G
Sbjct: 37 IINTKKLS-ARDFQKL-EREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFED 94
Query: 172 ---------ANLADCLRNPRNPSFTVLSTWLSR--MQSSSIIVSEENAGSLCAKICHFGT 220
A+ + C++ S + ++ +++++ + G+ K+ FG
Sbjct: 95 IVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGA-AVKLADFGL 153
Query: 221 AELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYA 263
A + N+S + GT GY++PE ++ D++A
Sbjct: 154 A-----IEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWA 191
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 119 IIFQRKLRRSLDLEQLRERLSVICRS-HHSSLIKLLGACVSGNCGYLVYEHVSG------ 171
II +KL + D ++L ER + ICR H ++++L + + YLV++ V+G
Sbjct: 38 IINTKKLS-ARDFQKL-EREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFED 95
Query: 172 ---------ANLADCLRNPRNPSFTVLSTWLSR--MQSSSIIVSEENAGSLCAKICHFGT 220
A+ + C++ S + ++ +++++ + G+ K+ FG
Sbjct: 96 IVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGA-AVKLADFGL 154
Query: 221 AELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYA 263
A + N+S + GT GY++PE ++ D++A
Sbjct: 155 A-----IEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWA 192
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 119 IIFQRKLRRSLDLEQLRERLSVICRS-HHSSLIKLLGACVSGNCGYLVYEHVSG------ 171
II +KL + D ++L ER + ICR H ++++L + + YLV++ V+G
Sbjct: 38 IINTKKLS-ARDFQKL-EREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFED 95
Query: 172 ---------ANLADCLRNPRNPSFTVLSTWLSR--MQSSSIIVSEENAGSLCAKICHFGT 220
A+ + C++ S + ++ +++++ + G+ K+ FG
Sbjct: 96 IVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGA-AVKLADFGL 154
Query: 221 AELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYA 263
A + N+S + GT GY++PE ++ D++A
Sbjct: 155 A-----IEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWA 192
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 115 GKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANL 174
G++V I Q L++ E + + V+ + + +++ L + + G+ ++V E+++G +L
Sbjct: 45 GQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL 104
Query: 175 ADCLRNPRNPSFTVLST------WLSRMQSSSIIVSEENAGSLC------AKICHFGTAE 222
D + + + L + S+ +I + + ++ K+ FG
Sbjct: 105 TDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFG--- 161
Query: 223 LCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
C +++ +S K +++ GT +MAPE K D+++
Sbjct: 162 FCAQITPEQS-KRSEMVGTPYWMAPEVVTRKAYGPKVDIWSL 202
>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native
pdb|3MFS|A Chain A, Cask-4m Cam Kinase Domain, Amppnp
pdb|3MFT|A Chain A, Cask-4m Cam Kinase Domain, Mn2+
pdb|3MFU|A Chain A, Cask-4m Cam Kinase Domain, Amppnp-Mn2+
Length = 351
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 129 LDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNPSFT- 187
L E L+ S+ H +++LL S Y+V+E + GA+L + + F
Sbjct: 68 LSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVY 127
Query: 188 ---VLSTWLSRM------------------QSSSIIVSEENAGSLCAKICHFGTAELCGE 226
V S ++ ++ + ++ S+EN+ + K+ FG A GE
Sbjct: 128 SEAVASHYMRQILEALRYCHDNNIIHRDVKPENVLLASKENSAPV--KLGDFGVAIQLGE 185
Query: 227 VSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYA 263
G+V GT +MAPE + DV+
Sbjct: 186 SGLVAGGRV----GTPHFMAPEVVKREPYGKPVDVWG 218
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 119 IIFQRKLRRSLDLEQLRERLSVICRS-HHSSLIKLLGACVSGNCGYLVYEHVSGANL--- 174
II +KL + D ++L ER + ICR H ++++L + + YLV++ V+G L
Sbjct: 61 IINTKKLS-ARDFQKL-EREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFED 118
Query: 175 --ADCLRNPRNPSFTVLSTWLS------------RMQSSSIIVSEENAGSLCAKICHFGT 220
A + + S + S ++ +++++ + G+ K+ FG
Sbjct: 119 IVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGA-AVKLADFGL 177
Query: 221 AELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYA 263
A + N+S + GT GY++PE ++ D++A
Sbjct: 178 A-----IEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWA 215
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 72/162 (44%), Gaps = 16/162 (9%)
Query: 115 GKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANL 174
G++V I Q L++ E + + V+ + + +++ L + + G+ ++V E+++G +L
Sbjct: 45 GQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL 104
Query: 175 ADCLRNPRNPSFTVLST------WLSRMQSSSIIVSEENAGSLC------AKICHFGTAE 222
D + + + L + S+ +I + + ++ K+ FG
Sbjct: 105 TDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFG--- 161
Query: 223 LCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
C +++ +S + + GT +MAPE K D+++
Sbjct: 162 FCAQITPEQSKRSTMV-GTPYWMAPEVVTRKAYGPKVDIWSL 202
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 115 GKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANL 174
G++V I Q L++ E + + V+ + + +++ L + + G+ ++V E+++G +L
Sbjct: 45 GQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL 104
Query: 175 ADCLRNPRNPSFTVLST------WLSRMQSSSIIVSEENAGSLC------AKICHFGTAE 222
D + + + L + S+ +I + + ++ K+ FG
Sbjct: 105 TDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFG--- 161
Query: 223 LCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
C +++ +S K + + GT +MAPE K D+++
Sbjct: 162 FCAQITPEQS-KRSXMVGTPYWMAPEVVTRKAYGPKVDIWSL 202
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 115 GKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANL 174
G++V I Q L++ E + + V+ + + +++ L + + G+ ++V E+++G +L
Sbjct: 46 GQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL 105
Query: 175 ADCLRNPRNPSFTVLST------WLSRMQSSSIIVSEENAGSLC------AKICHFGTAE 222
D + + + L + S+ +I + + ++ K+ FG
Sbjct: 106 TDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFG--- 162
Query: 223 LCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
C +++ +S K + + GT +MAPE K D+++
Sbjct: 163 FCAQITPEQS-KRSXMVGTPYWMAPEVVTRKAYGPKVDIWSL 203
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 24/148 (16%)
Query: 136 ERLSVICR-SHHSSLIKLLGACVSGNCGYLVYEHVSGANLAD-CLR----NPRNPSFTVL 189
E + ++ R H ++I L G YLV E + G L D LR + R SF VL
Sbjct: 69 EEIEILLRYGQHPNIITLKDVYDDGKHVYLVTELMRGGELLDKILRQKFFSEREASF-VL 127
Query: 190 ST------WLSR-------MQSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVN 236
T +L ++ S+I+ +E+ C +IC FG A+ E+G +
Sbjct: 128 HTIGKTVEYLHSQGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRA----ENGLLM 183
Query: 237 KIEGTRGYMAPEFQASGVVTQKCDVYAF 264
T ++APE + CD+++
Sbjct: 184 TPCYTANFVAPEVLKRQGYDEGCDIWSL 211
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 24/148 (16%)
Query: 136 ERLSVICR-SHHSSLIKLLGACVSGNCGYLVYEHVSGANLAD-CLR----NPRNPSFTVL 189
E + ++ R H ++I L G YLV E + G L D LR + R SF VL
Sbjct: 69 EEIEILLRYGQHPNIITLKDVYDDGKHVYLVTELMRGGELLDKILRQKFFSEREASF-VL 127
Query: 190 ST------WLSR-------MQSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVN 236
T +L ++ S+I+ +E+ C +IC FG A+ E+G +
Sbjct: 128 HTIGKTVEYLHSQGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRA----ENGLLM 183
Query: 237 KIEGTRGYMAPEFQASGVVTQKCDVYAF 264
T ++APE + CD+++
Sbjct: 184 TPCYTANFVAPEVLKRQGYDEGCDIWSL 211
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 42/159 (26%)
Query: 140 VICRSHHSSLIKLLGACV-SGNCGYLVYEHVSGANLADCLRNPRNP-------------- 184
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 86 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKPEDLYKDFL 145
Query: 185 --------SFTV---LSTWLSR------MQSSSIIVSEENAGSLCAKICHFGTAELCGEV 227
SF V + SR + + +I++SE+N KIC FG A +
Sbjct: 146 TLEHLIXYSFQVAKGMEFLASRKXIHRDLAARNILLSEKN----VVKICDFGLARDIXK- 200
Query: 228 SGNESGKVNKIEG--TRGYMAPEFQASGVVTQKCDVYAF 264
+ V K + +MAPE V T + DV++F
Sbjct: 201 ---DPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSF 236
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 38/156 (24%)
Query: 140 VICRSHHSSLIKLLGACV-SGNCGYLVYEHVSGANLADCLRNPRNP-------------- 184
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 84 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKDFLTL 143
Query: 185 ------SFTV---LSTWLSR------MQSSSIIVSEENAGSLCAKICHFGTA-ELCGEVS 228
SF V + SR + + +I++SE+N KIC FG A ++ +
Sbjct: 144 EHLICYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNV----VKICDFGLARDIYKDPD 199
Query: 229 GNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
G +MAPE V T + DV++F
Sbjct: 200 YVRKGDARL---PLKWMAPETIFDRVYTIQSDVWSF 232
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 74/164 (45%), Gaps = 20/164 (12%)
Query: 115 GKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANL 174
G++V I Q L++ E + + V+ + + +++ L + + G+ ++V E+++G +L
Sbjct: 46 GQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL 105
Query: 175 ADCLRNPRNPSFTVLST------WLSRMQSSSII---VSEENA-----GSLCAKICHFGT 220
D + + + L + S+ +I + +N GS+ K+ FG
Sbjct: 106 TDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRNIKSDNILLGMDGSV--KLTDFG- 162
Query: 221 AELCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
C +++ +S + + GT +MAPE K D+++
Sbjct: 163 --FCAQITPEQSKRSTMV-GTPYWMAPEVVTRKAYGPKVDIWSL 203
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 146 HSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPR 182
H +++ LLGAC YL++E+ +L + LR+ R
Sbjct: 108 HENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKR 144
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 23/161 (14%)
Query: 119 IIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCL 178
++F+ +L ++ QLR + + H ++++L G YL+ E+ + L
Sbjct: 45 VLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKEL 104
Query: 179 R------NPRNPSF-TVLSTWLSRMQSSSII---VSEEN-----AGSLCAKICHFGTAEL 223
+ R ++ T L+ LS S +I + EN AG L KI FG +
Sbjct: 105 QKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGEL--KIADFGWS-- 160
Query: 224 CGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
S + + GT Y+ PE + +K D+++
Sbjct: 161 ----VHAPSSRRXXLXGTLDYLPPEMIEGRMHDEKVDLWSL 197
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 43/160 (26%)
Query: 140 VICRSHHSSLIKLLGACV-SGNCGYLVYEHVSGANLADCLRNPRNP-------------- 184
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 85 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTPEDLYKDF 144
Query: 185 ---------SFTV---LSTWLSR------MQSSSIIVSEENAGSLCAKICHFGTAELCGE 226
SF V + SR + + +I++SE+N KIC FG A +
Sbjct: 145 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNV----VKICDFGLARDIXK 200
Query: 227 VSGNESGKVNKIEG--TRGYMAPEFQASGVVTQKCDVYAF 264
+ V K + +MAPE V T + DV++F
Sbjct: 201 ----DPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSF 236
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 111 GTIRGKDVIIFQRKLRRSL--DLE-QLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYE 167
G +R + ++ + R +L DL+ + + ++ + H ++++L+G C Y+V E
Sbjct: 133 GRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192
Query: 168 HVSGANLADCLRN 180
V G + LR
Sbjct: 193 LVQGGDFLTFLRT 205
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 44/161 (27%)
Query: 140 VICRSHHSSLIKLLGACV-SGNCGYLVYEHVSGANLADCLRNPRNP-------------- 184
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 84 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 143
Query: 185 ----------SFTV---LSTWLSR------MQSSSIIVSEENAGSLCAKICHFGTAELCG 225
SF V + SR + + +I++SE+N KIC FG A
Sbjct: 144 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNV----VKICDFGLARDIX 199
Query: 226 EVSGNESGKVNKIEG--TRGYMAPEFQASGVVTQKCDVYAF 264
+ + V K + +MAPE V T + DV++F
Sbjct: 200 K----DPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSF 236
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 111 GTIRGKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVS 170
G KD + + ++ E E V+ + H L++L G C+ LV+E +
Sbjct: 24 GYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 83
Query: 171 GANLADCLRNPR 182
L+D LR R
Sbjct: 84 HGCLSDYLRTQR 95
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 111 GTIRGKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVS 170
G KD + + ++ E E V+ + H L++L G C+ LV+E +
Sbjct: 29 GYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 88
Query: 171 GANLADCLRNPRN 183
L+D LR R
Sbjct: 89 HGCLSDYLRTQRG 101
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 111 GTIRGKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVS 170
G KD + + ++ E E V+ + H L++L G C+ LV+E +
Sbjct: 26 GYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 85
Query: 171 GANLADCLRNPRN 183
L+D LR R
Sbjct: 86 HGCLSDYLRTQRG 98
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 44/161 (27%)
Query: 140 VICRSHHSSLIKLLGACVS-GNCGYLVYEHVSGANLADCLRNPRNP-------------- 184
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 75 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 134
Query: 185 ----------SFTV---LSTWLSR------MQSSSIIVSEENAGSLCAKICHFGTAELCG 225
SF V + SR + + +I++SE+N KIC FG A
Sbjct: 135 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNV----VKICDFGLARDIX 190
Query: 226 EVSGNESGKVNKIEG--TRGYMAPEFQASGVVTQKCDVYAF 264
+ + V K + +MAPE V T + DV++F
Sbjct: 191 K----DPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSF 227
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 111 GTIRGKDVIIFQRKLRRSL--DLE-QLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYE 167
G +R + ++ + R +L DL+ + + ++ + H ++++L+G C Y+V E
Sbjct: 133 GRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192
Query: 168 HVSGANLADCLRN 180
V G + LR
Sbjct: 193 LVQGGDFLTFLRT 205
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 111 GTIRGKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVS 170
G KD + + ++ E E V+ + H L++L G C+ LV+E +
Sbjct: 26 GYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 85
Query: 171 GANLADCLRNPRN 183
L+D LR R
Sbjct: 86 HGCLSDYLRTQRG 98
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 23/161 (14%)
Query: 119 IIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCL 178
++F+ +L ++ QLR + + H ++++L G YL+ E+ + L
Sbjct: 41 VLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100
Query: 179 R------NPRNPSF-TVLSTWLSRMQSSSII---VSEEN-----AGSLCAKICHFGTAEL 223
+ R ++ T L+ LS S +I + EN AG L KI FG +
Sbjct: 101 QKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGEL--KIADFGWS-- 156
Query: 224 CGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
C S + + GT Y+ PE + +K D+++
Sbjct: 157 CHAPSSRRT----TLSGTLDYLPPEMIEGRMHDEKVDLWSL 193
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 42/160 (26%)
Query: 140 VICRSHHSSLIKLLGACV-SGNCGYLVYEHVSGANLADCLRNPRNP-------------- 184
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 84 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 143
Query: 185 ----------SFTV---LSTWLSR------MQSSSIIVSEENAGSLCAKICHFGTA-ELC 224
SF V + SR + + +I++SE+N KIC FG A ++
Sbjct: 144 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNV----VKICDFGLARDIY 199
Query: 225 GEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+ G +MAPE V T + DV++F
Sbjct: 200 KDPDXVRKGDARL---PLKWMAPETIFDRVYTIQSDVWSF 236
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 44/161 (27%)
Query: 140 VICRSHHSSLIKLLGACVS-GNCGYLVYEHVSGANLADCLRNPRNP-------------- 184
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 75 LIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 134
Query: 185 ----------SFTV---LSTWLSR------MQSSSIIVSEENAGSLCAKICHFGTAELCG 225
SF V + SR + + +I++SE+N KIC FG A
Sbjct: 135 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNV----VKICDFGLARDIX 190
Query: 226 EVSGNESGKVNKIEG--TRGYMAPEFQASGVVTQKCDVYAF 264
+ + V K + +MAPE V T + DV++F
Sbjct: 191 K----DPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSF 227
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 132 EQLRERLSVICR-SHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNPSF 186
E L L ++ H +++ LLGAC G ++ E+ +L + LR R P
Sbjct: 94 EALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKRPPGL 149
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 111 GTIRGKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVS 170
G KD + + S+ + E V+ + H L++L G C+ LV+E +
Sbjct: 46 GYWLNKDKVAIKTIKEGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 105
Query: 171 GANLADCLRNPRN 183
L+D LR R
Sbjct: 106 HGCLSDYLRTQRG 118
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 42/160 (26%)
Query: 140 VICRSHHSSLIKLLGACV-SGNCGYLVYEHVSGANLADCLRNPRNP-------------- 184
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 84 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 143
Query: 185 ----------SFTV---LSTWLSR------MQSSSIIVSEENAGSLCAKICHFGTA-ELC 224
SF V + SR + + +I++SE+N KIC FG A ++
Sbjct: 144 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNV----VKICDFGLARDIY 199
Query: 225 GEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+ G +MAPE V T + DV++F
Sbjct: 200 KDPDYVRKGDARL---PLKWMAPETIFDRVYTIQSDVWSF 236
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 78 ENPHI--YHLSEICAATNNFLAKKFTXXXXXXXWRGTIRGKDV---IIFQRKLRRSLDLE 132
E PHI Y L + NF K R + GK+V II + +L S L+
Sbjct: 9 EQPHIGNYRLLKTIGK-GNFAKVKLA--------RHILTGKEVAVKIIDKTQLNSS-SLQ 58
Query: 133 QLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCL 178
+L + ++ +H +++KL + YLV E+ SG + D L
Sbjct: 59 KLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYL 104
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 81/209 (38%), Gaps = 40/209 (19%)
Query: 78 ENPHI--YHLSEICAATNNFLAKKFTXXXXXXXWRGTIRGKDV---IIFQRKLRRSLDLE 132
E PHI Y L + NF K R + GK+V II + +L S L+
Sbjct: 9 EQPHIGNYRLLKTIGK-GNFAKVKLA--------RHILTGKEVAVRIIDKTQLNSS-SLQ 58
Query: 133 QLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCL-------RNPRNPS 185
+L + ++ +H +++KL + YLV E+ SG + D L
Sbjct: 59 KLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAK 118
Query: 186 FTVLSTWLSRMQSSSIIVSEENAGSLC------AKICHFGTAELCGEVSGNESGKVNKIE 239
F + + + I+ + A +L KI FG + NE NK++
Sbjct: 119 FRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS--------NEFTFGNKLD 170
Query: 240 ---GTRGYMAPE-FQASGVVTQKCDVYAF 264
G+ Y APE FQ + DV++
Sbjct: 171 EFCGSPPYAAPELFQGKKYDGPEVDVWSL 199
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 78 ENPHI--YHLSEICAATNNFLAKKFTXXXXXXXWRGTIRGKDV---IIFQRKLRRSLDLE 132
E PHI Y L + NF K R + GK+V II + +L S L+
Sbjct: 9 EQPHIGNYRLLKTIG-KGNFAKVKLA--------RHILTGKEVAVKIIDKTQLNSS-SLQ 58
Query: 133 QLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCL 178
+L + ++ +H +++KL + YLV E+ SG + D L
Sbjct: 59 KLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYL 104
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 78 ENPHI--YHLSEICAATNNFLAKKFTXXXXXXXWRGTIRGKDV---IIFQRKLRRSLDLE 132
E PHI Y L + NF K R + GK+V II + +L S L+
Sbjct: 9 EQPHIGNYRLLKTIGK-GNFAKVKLA--------RHILTGKEVAVKIIDKTQLNSS-SLQ 58
Query: 133 QLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCL 178
+L + ++ +H +++KL + YLV E+ SG + D L
Sbjct: 59 KLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYL 104
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 42/160 (26%)
Query: 140 VICRSHHSSLIKLLGACV-SGNCGYLVYEHVSGANLADCLRNPRNP-------------- 184
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 121 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 180
Query: 185 ----------SFTV---LSTWLSR------MQSSSIIVSEENAGSLCAKICHFGTA-ELC 224
SF V + SR + + +I++SE+N KIC FG A ++
Sbjct: 181 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNV----VKICDFGLARDIY 236
Query: 225 GEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+ G +MAPE V T + DV++F
Sbjct: 237 KDPDYVRKGDARL---PLKWMAPETIFDRVYTIQSDVWSF 273
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 81/209 (38%), Gaps = 40/209 (19%)
Query: 78 ENPHI--YHLSEICAATNNFLAKKFTXXXXXXXWRGTIRGKDV---IIFQRKLRRSLDLE 132
E PHI Y L + NF K R + GK+V II + +L S L+
Sbjct: 9 EQPHIGNYRLLKTIGK-GNFAKVKLA--------RHILTGKEVAVRIIDKTQLNSS-SLQ 58
Query: 133 QLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCL-------RNPRNPS 185
+L + ++ +H +++KL + YLV E+ SG + D L
Sbjct: 59 KLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAK 118
Query: 186 FTVLSTWLSRMQSSSIIVSEENAGSLC------AKICHFGTAELCGEVSGNESGKVNKIE 239
F + + + I+ + A +L KI FG + NE NK++
Sbjct: 119 FRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS--------NEFTFGNKLD 170
Query: 240 ---GTRGYMAPE-FQASGVVTQKCDVYAF 264
G+ Y APE FQ + DV++
Sbjct: 171 TFCGSPPYAAPELFQGKKYDGPEVDVWSL 199
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/146 (18%), Positives = 65/146 (44%), Gaps = 24/146 (16%)
Query: 135 RERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLR-NPRNPSF--TVLST 191
++ ++V+ + + + G+ + +++ E++ G + D L+ P ++ T+L
Sbjct: 65 QQEITVLSQCDSPYITRYFGSYLKSTKLWIIMEYLGGGSALDLLKPGPLEETYIATILRE 124
Query: 192 WLSRM-------------QSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVNKI 238
L + +++++++SE+ K+ FG A G+++ + K N
Sbjct: 125 ILKGLDYLHSERKIHRDIKAANVLLSEQGD----VKLADFGVA---GQLTDTQI-KRNXF 176
Query: 239 EGTRGYMAPEFQASGVVTQKCDVYAF 264
GT +MAPE K D+++
Sbjct: 177 VGTPFWMAPEVIKQSAYDFKADIWSL 202
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 42/160 (26%)
Query: 140 VICRSHHSSLIKLLGACV-SGNCGYLVYEHVSGANLADCLRNPRNP-------------- 184
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 86 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKEAPEDLYKD 145
Query: 185 ----------SFTV---LSTWLSR------MQSSSIIVSEENAGSLCAKICHFGTA-ELC 224
SF V + SR + + +I++SE+N KIC FG A ++
Sbjct: 146 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNV----VKICDFGLARDIY 201
Query: 225 GEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+ G +MAPE V T + DV++F
Sbjct: 202 KDPDYVRKGDARL---PLKWMAPETIFDRVYTIQSDVWSF 238
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 42/160 (26%)
Query: 140 VICRSHHSSLIKLLGACVS-GNCGYLVYEHVSGANLADCLRNPRNP-------------- 184
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 75 LIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 134
Query: 185 ----------SFTV---LSTWLSR------MQSSSIIVSEENAGSLCAKICHFGTA-ELC 224
SF V + SR + + +I++SE+N KIC FG A ++
Sbjct: 135 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNV----VKICDFGLARDIY 190
Query: 225 GEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+ G +MAPE V T + DV++F
Sbjct: 191 KDPDYVRKGDARL---PLKWMAPETIFDRVYTIQSDVWSF 227
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 94 NFLAKKFTXXXXXXXWRGTIRGKDVIIFQRKL-----RRSLDLEQLRERLSVICRSHHSS 148
NFL K W+G +G D+++ K+ R+S D + RL + H +
Sbjct: 13 NFLTK-LNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFS---HPN 68
Query: 149 LIKLLGACVSGNCGY 163
++ +LGAC S +
Sbjct: 69 VLPVLGACQSPPAPH 83
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 29/175 (16%)
Query: 110 RGTIRGKDV---IIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVY 166
R + GK+V II + +L S L++L + ++ +H +++KL + YLV
Sbjct: 27 RHILTGKEVAVKIIDKTQLNSS-SLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVM 85
Query: 167 EHVSGANLADCL-------RNPRNPSFTVLSTWLSRMQSSSIIVSEENAGSLC------A 213
E+ SG + D L F + + + I+ + A +L
Sbjct: 86 EYASGGEVFDYLVAHGWMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNI 145
Query: 214 KICHFGTAELCGEVSGNESGKVNKIE---GTRGYMAPE-FQASGVVTQKCDVYAF 264
KI FG + NE NK++ G+ Y APE FQ + DV++
Sbjct: 146 KIADFGFS--------NEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSL 192
>pdb|1NSL|A Chain A, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|B Chain B, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|C Chain C, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|D Chain D, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|E Chain E, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|F Chain F, Crystal Structure Of Probable Acetyltransferase
Length = 184
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 223 LCGEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCD---VYAF 264
LCG +S + +VN+ ++A EF+ G++T C YAF
Sbjct: 79 LCGXISLHNLDQVNRKAEIGYWIAKEFEGKGIITAACRKLITYAF 123
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 42/160 (26%)
Query: 140 VICRSHHSSLIKLLGACVS-GNCGYLVYEHVSGANLADCLRNPRNP-------------- 184
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 75 LIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 134
Query: 185 ----------SFTV---LSTWLSR------MQSSSIIVSEENAGSLCAKICHFGTA-ELC 224
SF V + SR + + +I++SE+N KIC FG A ++
Sbjct: 135 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNV----VKICDFGLARDIY 190
Query: 225 GEVSGNESGKVNKIEGTRGYMAPEFQASGVVTQKCDVYAF 264
+ G +MAPE V T + DV++F
Sbjct: 191 KDPDYVRKGDARL---PLKWMAPETIFDRVYTIQSDVWSF 227
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRN 183
+L L +V+ + +H +IKL GAC L+ E+ +L LR R
Sbjct: 69 ELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRK 122
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRN 183
+L L +V+ + +H +IKL GAC L+ E+ +L LR R
Sbjct: 69 ELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRK 122
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 130 DLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRN 183
+L L +V+ + +H +IKL GAC L+ E+ +L LR R
Sbjct: 69 ELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRK 122
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 94 NFLAKKFTXXXXXXXWRGTIRGKDVIIFQRKL-----RRSLDLEQLRERLSVICRSHHSS 148
NFL K W+G +G D+++ K+ R+S D + RL + H +
Sbjct: 13 NFLTK-LNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFS---HPN 68
Query: 149 LIKLLGACVSGNCGY 163
++ +LGAC S +
Sbjct: 69 VLPVLGACQSPPAPH 83
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 132 EQLRERLSVICR-SHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPR-----NPS 185
E L L ++ H +++ LLGAC G ++ E+ +L + LR +P+
Sbjct: 94 EALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPA 153
Query: 186 FTVLSTWLS 194
F + ++ LS
Sbjct: 154 FAIANSTLS 162
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 140 VICRSHHSSLIKLLGACV-SGNCGYLVYEHVSGANLADCLRNPRN 183
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 84 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRN 128
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 140 VICRSHHSSLIKLLGACVS-GNCGYLVYEHVSGANLADCLRNPRN 183
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 84 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRN 128
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 140 VICRSHHSSLIKLLGACVS-GNCGYLVYEHVSGANLADCLRNPRN 183
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 86 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRN 130
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 140 VICRSHHSSLIKLLGACVS-GNCGYLVYEHVSGANLADCLRNPRN 183
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 77 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRN 121
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 140 VICRSHHSSLIKLLGACVS-GNCGYLVYEHVSGANLADCLRNPRN 183
+I HH +++ LLGAC G ++ E NL+ LR+ RN
Sbjct: 79 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRN 123
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 145 HHSSLIKLLGACV-SGNCGYLVYEHVSGANLADCLRNPRNPSF 186
HH +++ LLGAC G ++ E+ NL++ L++ R+ F
Sbjct: 89 HHLNVVNLLGACTKQGGPLMVIVEYCKYGNLSNYLKSKRDLFF 131
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%)
Query: 111 GTIRGKDVIIFQRKLRRSLDLEQLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVS 170
G KD + + ++ E E V+ + H L++L G C+ LV E +
Sbjct: 27 GYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME 86
Query: 171 GANLADCLRNPRN 183
L+D LR R
Sbjct: 87 HGCLSDYLRTQRG 99
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 78 ENPHI--YHLSEICAATNNFLAKKFTXXXXXXXWRGTIRGKDV---IIFQRKLRRSLDLE 132
E PHI Y L + NF K R + GK+V II + +L S L+
Sbjct: 9 EQPHIGNYRLLKTIGK-GNFAKVKLA--------RHILTGKEVAVKIIDKTQLNSS-SLQ 58
Query: 133 QLRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCL 178
+L + + +H +++KL + YLV E+ SG + D L
Sbjct: 59 KLFREVRIXKVLNHPNIVKLFEVIETEKTLYLVXEYASGGEVFDYL 104
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/147 (19%), Positives = 62/147 (42%), Gaps = 26/147 (17%)
Query: 135 RERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNPSFTVLSTWLS 194
++ ++V+ + + K G+ + +++ E++ G + D L P T ++T L
Sbjct: 53 QQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILR 111
Query: 195 RM-----------------QSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVNK 237
+ +++++++SE K+ FG A G+++ + K N
Sbjct: 112 EILKGLDYLHSEKKIHRDIKAANVLLSEHGE----VKLADFGVA---GQLTDTQI-KRNX 163
Query: 238 IEGTRGYMAPEFQASGVVTQKCDVYAF 264
GT +MAPE K D+++
Sbjct: 164 FVGTPFWMAPEVIKQSAYDSKADIWSL 190
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/147 (19%), Positives = 62/147 (42%), Gaps = 26/147 (17%)
Query: 135 RERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNPSFTVLSTWLS 194
++ ++V+ + + K G+ + +++ E++ G + D L P T ++T L
Sbjct: 53 QQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILR 111
Query: 195 RM-----------------QSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVNK 237
+ +++++++SE K+ FG A G+++ + K N
Sbjct: 112 EILKGLDYLHSEKKIHRDIKAANVLLSEHGE----VKLADFGVA---GQLTDTQI-KRNT 163
Query: 238 IEGTRGYMAPEFQASGVVTQKCDVYAF 264
GT +MAPE K D+++
Sbjct: 164 FVGTPFWMAPEVIKQSAYDSKADIWSL 190
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 134 LRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHV 169
+RE +S++ +H +++KLL + N YLV+EHV
Sbjct: 53 IRE-ISLLKELNHPNIVKLLDVIHTENKLYLVFEHV 87
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/147 (19%), Positives = 62/147 (42%), Gaps = 26/147 (17%)
Query: 135 RERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNPSFTVLSTWLS 194
++ ++V+ + + K G+ + +++ E++ G + D L P T ++T L
Sbjct: 68 QQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILR 126
Query: 195 RM-----------------QSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVNK 237
+ +++++++SE K+ FG A G+++ + K N
Sbjct: 127 EILKGLDYLHSEKKIHRDIKAANVLLSEHGE----VKLADFGVA---GQLTDTQI-KRNX 178
Query: 238 IEGTRGYMAPEFQASGVVTQKCDVYAF 264
GT +MAPE K D+++
Sbjct: 179 FVGTPFWMAPEVIKQSAYDSKADIWSL 205
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 134 LRERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHV 169
+RE +S++ +H +++KLL + N YLV+EHV
Sbjct: 49 IRE-ISLLKELNHPNIVKLLDVIHTENKLYLVFEHV 83
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/147 (19%), Positives = 62/147 (42%), Gaps = 26/147 (17%)
Query: 135 RERLSVICRSHHSSLIKLLGACVSGNCGYLVYEHVSGANLADCLRNPRNPSFTVLSTWLS 194
++ ++V+ + + K G+ + +++ E++ G + D L P T ++T L
Sbjct: 73 QQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILR 131
Query: 195 RM-----------------QSSSIIVSEENAGSLCAKICHFGTAELCGEVSGNESGKVNK 237
+ +++++++SE K+ FG A G+++ + K N
Sbjct: 132 EILKGLDYLHSEKKIHRDIKAANVLLSEHGE----VKLADFGVA---GQLTDTQI-KRNT 183
Query: 238 IEGTRGYMAPEFQASGVVTQKCDVYAF 264
GT +MAPE K D+++
Sbjct: 184 FVGTPFWMAPEVIKQSAYDSKADIWSL 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,423,011
Number of Sequences: 62578
Number of extensions: 285710
Number of successful extensions: 843
Number of sequences better than 100.0: 140
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 188
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)