BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016851
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 19/233 (8%)
Query: 160 SPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRX 219
+PS+ +G+D E R FI ++G RL L T+ T ++ HRF++ S R
Sbjct: 25 TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRY 84
Query: 220 XXXXXXXXXXXKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQ 279
K EETP+ D+++ + L + + +E V+ E+
Sbjct: 85 VTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFG--------DDPKEEVMVLER 136
Query: 280 MILTTLNFELNVQHPYDPLTSILNKL-GLSQTV--LVNLALNLVSEGLRSSLWLQFKPNH 336
++L T+ F+L V+HPY L +L G + LV +A V++ L ++L LQ++P
Sbjct: 137 ILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEI 196
Query: 337 IXXXXXXXXXKFLNWDL------AAYQNIWHEF-QTTPA-ILQDVAQQLMELF 381
I + +++ Y+ W +F Q P +L+D+ Q+++L+
Sbjct: 197 IAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLY 249
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution
(Casp Target)
pdb|2IVX|B Chain B, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution
(Casp Target)
Length = 257
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 12/208 (5%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
F +R+++E +PSR+ G++A +E R IQ +G RL + Q TI TA+V HRF++
Sbjct: 6 FFTREQLEN-TPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYM 64
Query: 210 RRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSELYHKQNITLLSYLLPID---W 266
S ++ K EE R L V++ + H L LL +
Sbjct: 65 HHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHP-----LEPLLDTKCDAY 119
Query: 267 FEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLR- 325
+Q RE VI E ++L TL FE+ ++HP+ + + S+ L + + + L
Sbjct: 120 LQQTRELVI-LETIMLQTLGFEITIEHPHTDVVKCTQLVRASKD-LAQTSYFMATNSLHL 177
Query: 326 SSLWLQFKPNHIXXXXXXXXXKFLNWDL 353
++ LQ+KP I K+ NW++
Sbjct: 178 TTFCLQYKPTVIACVCIHLACKWSNWEI 205
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
pdb|2W2H|B Chain B, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
Length = 264
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 12/208 (5%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ +R+++E SPSR+ G+D +E R +Q++G RL + Q TI TA+V HRF++
Sbjct: 10 YFTREQLEN-SPSRRFGLDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM 68
Query: 210 RRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQ 269
+S R K EE P+ L V++ + H Q LP E
Sbjct: 69 IQSFTRFHRNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQES------LPDTRSEA 122
Query: 270 YRERV---IEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLR- 325
Y ++V + E +IL TL FEL + HP+ + + S+ L + + + L
Sbjct: 123 YLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATNSLHL 181
Query: 326 SSLWLQFKPNHIXXXXXXXXXKFLNWDL 353
++ LQ+ P + K+ NW++
Sbjct: 182 TTFSLQYTPPVVACVCIHLACKWSNWEI 209
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|B Chain B, Structure Of Cdk9CYCLIN T F241L
Length = 259
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 17/241 (7%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ +R+++E SPSR+ G+D +E R +Q++G RL + Q TI TA+V HRF++
Sbjct: 13 YFTREQLEN-SPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM 71
Query: 210 RRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQ 269
+S K EE P+ L V++ + H Q LP E
Sbjct: 72 IQSFTQFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQES------LPDTRSEA 125
Query: 270 YRERV---IEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLR- 325
Y ++V + E +IL TL FEL + HP+ + + S+ L + + + L
Sbjct: 126 YLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATNSLHL 184
Query: 326 SSLWLQFKPNHIXXXXXXXXXKFLNWDLAAYQNI--WHEF---QTTPAILQDVAQQLMEL 380
++ LQ+ P + K+ NW++ + W E+ T +L ++ +L+++
Sbjct: 185 TTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHELLQI 244
Query: 381 F 381
Sbjct: 245 L 245
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 266
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 12/208 (5%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ +R+++E SPSR+ G+D +E R +Q++G RL + Q TI TA+V HRF++
Sbjct: 13 YFTREQLEN-SPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM 71
Query: 210 RRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQ 269
+S K EE P+ L V++ + H Q LP E
Sbjct: 72 IQSFTQFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQES------LPDTRSEA 125
Query: 270 YRERV---IEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLR- 325
Y ++V + E +IL TL FEL + HP+ + + S+ L + + + L
Sbjct: 126 YLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATNSLHL 184
Query: 326 SSLWLQFKPNHIXXXXXXXXXKFLNWDL 353
++ LQ+ P + K+ NW++
Sbjct: 185 TTFSLQYTPPVVACVCIHLACKWSNWEI 212
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|B Chain B, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|C Chain C, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|D Chain D, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
Length = 358
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 12/208 (5%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ +R+++E SPSR+ G+D +E R +Q++G RL + Q TI TA+V HRF++
Sbjct: 13 YFTREQLEN-SPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM 71
Query: 210 RRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQ 269
+S K EE P+ L V++ + H Q LP E
Sbjct: 72 IQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQES------LPDTRSEA 125
Query: 270 YRERV---IEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLR- 325
Y ++V + E +IL TL FEL + HP+ + + S+ L + + + L
Sbjct: 126 YLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATNSLHL 184
Query: 326 SSLWLQFKPNHIXXXXXXXXXKFLNWDL 353
++ LQ+ P + K+ NW++
Sbjct: 185 TTFSLQYTPPVVACVCIHLACKWSNWEI 212
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|B Chain B, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|B Chain B, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|4EC8|B Chain B, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|B Chain B, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
pdb|4BCF|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCH|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 260
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 17/241 (7%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ +R+++E SPSR+ G+D +E R +Q++G RL + Q TI TA+V HRF++
Sbjct: 14 YFTREQLEN-SPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM 72
Query: 210 RRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQ 269
+S K E P+ L V++ + H Q LP E
Sbjct: 73 IQSFTRFPGNSVAPAALFLAAKVEGQPKKLEHVIKVAHTCLHPQES------LPDTRSEA 126
Query: 270 YRERV---IEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLR- 325
Y ++V + E +IL TL FEL + HP+ + + S+ L + + + L
Sbjct: 127 YLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATNSLHL 185
Query: 326 SSLWLQFKPNHIXXXXXXXXXKFLNWDLAAYQNI--WHEF---QTTPAILQDVAQQLMEL 380
++ LQ+ P + K+ NW++ + W E+ T +L ++ +L+++
Sbjct: 186 TTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHELLQI 245
Query: 381 F 381
Sbjct: 246 L 246
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC
Length = 285
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 68/155 (43%), Gaps = 5/155 (3%)
Query: 183 IQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEETPRPLNDV 242
IQ LG L+L Q I TA V RF+ R S D K EE N
Sbjct: 50 IQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTR 109
Query: 243 LRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSIL 302
L A++ K T SY P + F ++E E +L ++ L V HPY PL +
Sbjct: 110 LIAAATSVLK---TRFSYAFPKE-FPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYV 165
Query: 303 NKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHI 337
+G + +L+ LA +V++ R+ L L + P I
Sbjct: 166 QDMG-QEDMLLPLAWRIVNDTYRTDLCLLYPPFMI 199
>pdb|1ZP2|A Chain A, Structure Of The Mediator Subunit Cyclin C
Length = 235
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 36/198 (18%)
Query: 141 SKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTA 200
+ LE EP +S+D I ++ +Q G RL L Q + TA
Sbjct: 14 TDLESLEPTCLSKDTIYQWK---------------------VVQTFGDRLRLRQRVLATA 52
Query: 201 MVLCHRFFVRRSH-ACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSELYHKQNITLLS 259
+VL R+ ++++ K EE P + + +++L+ +
Sbjct: 53 IVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLK------ 106
Query: 260 YLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNL 319
+ R + E E I++ L+ L V HPY L + ++Q L A ++
Sbjct: 107 -------VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQL-EFAWSI 158
Query: 320 VSEGLRSSLWLQFKPNHI 337
V++ SSL L P+ +
Sbjct: 159 VNDSYASSLCLMAHPHQL 176
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 49 YNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASA 93
Y+N ++ G+FREH D I S++ P RR+F A
Sbjct: 19 YDNIMTFEGRFREHILPDQVHLINLSFLVPT-----MRREFGGCA 58
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside
Kinase (Bthnk) In Complex With Inosine
Length = 326
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 49 YNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASA 93
Y+N ++ G+FREH D I S++ P RR+F A
Sbjct: 11 YDNIMTFEGRFREHILPDQVHLINLSFLVPT-----MRREFGGCA 50
>pdb|1JKW|A Chain A, Structure Of Cyclin Mcs2
Length = 323
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 268 EQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVN 314
E+ E+++E E +++ LNF L V +PY P L L +L N
Sbjct: 137 EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILEN 183
>pdb|1KXU|A Chain A, Cyclin H, A Positive Regulatory Subunit Of Cdk Activating
Kinase
Length = 333
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 268 EQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVN 314
E+ E+++E E +++ LNF L V +PY P L L +L N
Sbjct: 147 EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILEN 193
>pdb|2X53|S Chain S, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|T Chain T, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|U Chain U, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|V Chain V, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|W Chain W, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|X Chain X, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
Length = 298
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 245 ASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLN 286
+ E Y T L P+ FE+YR R+IE QM L L+
Sbjct: 244 VNDETYQGWKGTTALNLFPVMDFERYRTRIIEKGQMELINLS 285
>pdb|2X54|S Chain S, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|T Chain T, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|U Chain U, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|V Chain V, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|W Chain W, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|X Chain X, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X5A|S Chain S, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|T Chain T, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|U Chain U, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|V Chain V, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|W Chain W, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|X Chain X, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
Length = 298
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 245 ASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLN 286
+ E Y T L P+ FE+YR R+IE QM L L+
Sbjct: 244 VNDETYQGWKGTTALNLFPVMDFERYRTRIIEKGQMELINLS 285
>pdb|3NO0|A Chain A, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
pdb|3NO0|B Chain B, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
pdb|3NO0|C Chain C, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
Length = 276
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 91 ASAWGDSARNYLQVPNEYETAVSSSN-KTLVPPVSISNIEVSTSMSCKRDRSKLEDDE 147
S D+ + + + E E +++ N K ++ +I +ST S R R KLEDDE
Sbjct: 209 VSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPLSTKKSIPRTRWKLEDDE 266
>pdb|2WZP|P Chain P, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
pdb|2WZP|Q Chain Q, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
Length = 326
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 245 ASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLN 286
+ E Y T L P+ FE+YR R+IE QM L L+
Sbjct: 272 VNDETYQGWKGTTALNLFPVMDFERYRTRIIEKGQMELINLS 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,752,627
Number of Sequences: 62578
Number of extensions: 339930
Number of successful extensions: 766
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 21
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)