Query 016851
Match_columns 381
No_of_seqs 215 out of 1335
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivx_A Cyclin-T2; transcriptio 100.0 1.2E-44 4.2E-49 343.0 25.7 230 147-381 3-238 (257)
2 2i53_A Cyclin K; cell cycle, t 100.0 9.2E-44 3.2E-48 336.9 24.6 228 145-381 11-249 (258)
3 3rgf_B Cyclin-C; protein kinas 100.0 2.7E-43 9.4E-48 339.0 22.7 226 147-381 14-240 (285)
4 2pk2_A Cyclin-T1, protein TAT; 100.0 4.3E-43 1.5E-47 347.5 17.8 233 144-381 7-245 (358)
5 1zp2_A RNA polymerase II holoe 100.0 3E-41 1E-45 316.0 13.7 211 146-381 7-218 (235)
6 1jkw_A Cyclin H; cell cycle, c 100.0 4.1E-37 1.4E-41 300.9 23.4 220 145-381 7-259 (323)
7 3g33_B CCND3 protein; Ser/Thr 100.0 2.6E-36 8.9E-41 293.1 15.0 202 161-381 56-265 (306)
8 2cch_B Cyclin A2, cyclin-A; co 100.0 1.5E-35 5.2E-40 281.2 14.7 190 168-381 31-226 (260)
9 2w96_A G1/S-specific cyclin-D1 100.0 1.4E-35 4.9E-40 283.0 13.8 205 158-381 37-255 (271)
10 1g3n_C V-cyclin; cyclin-depend 100.0 3.1E-35 1.1E-39 278.7 14.7 205 158-381 31-246 (257)
11 2f2c_A Cyclin homolog, V-cycli 100.0 1.1E-34 3.8E-39 274.5 15.2 199 164-381 40-246 (254)
12 2b9r_A Human cyclin B1; cell c 100.0 8.4E-35 2.9E-39 277.6 14.0 187 170-381 32-223 (269)
13 1f5q_B Gamma herpesvirus cycli 100.0 6.9E-33 2.3E-37 262.0 19.6 198 158-380 34-239 (252)
14 1w98_B Cyclin E, G1/S-specific 100.0 7E-32 2.4E-36 259.2 15.1 187 168-381 42-240 (283)
15 1c9b_A General transcription f 100.0 1E-30 3.6E-35 239.7 20.1 181 176-379 5-185 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 3.5E-26 1.2E-30 208.3 19.5 184 172-379 6-191 (200)
17 3k7a_M Transcription initiatio 99.9 3.9E-24 1.3E-28 210.7 4.5 181 177-380 127-319 (345)
18 4bbr_M Transcription initiatio 99.7 1.6E-18 5.3E-23 170.6 8.6 180 177-379 127-318 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 97.7 0.00013 4.6E-09 69.3 10.2 103 179-303 77-183 (293)
20 1ais_B TFB TFIIB, protein (tra 97.7 0.00016 5.5E-09 64.8 9.2 89 180-289 109-197 (200)
21 1c9b_A General transcription f 97.0 0.0022 7.7E-08 57.6 8.5 67 180-246 103-169 (207)
22 4bbr_M Transcription initiatio 95.3 0.073 2.5E-06 51.7 9.8 86 292-379 127-212 (345)
23 1zp2_A RNA polymerase II holoe 94.9 0.17 5.8E-06 46.1 10.6 83 295-379 32-123 (235)
24 2b9r_A Human cyclin B1; cell c 94.4 0.22 7.4E-06 46.4 10.3 83 296-379 43-127 (269)
25 3rgf_B Cyclin-C; protein kinas 94.1 0.31 1.1E-05 45.8 10.7 84 295-379 47-146 (285)
26 3h4c_A Transcription factor TF 94.0 2 6.9E-05 38.4 14.8 62 182-243 18-82 (260)
27 3k7a_M Transcription initiatio 93.9 0.01 3.6E-07 57.7 0.0 67 180-246 236-302 (345)
28 2cch_B Cyclin A2, cyclin-A; co 93.7 0.23 7.9E-06 45.9 8.9 83 296-379 44-128 (260)
29 2f2c_A Cyclin homolog, V-cycli 93.6 0.34 1.1E-05 44.6 9.8 84 295-379 56-141 (254)
30 1g3n_C V-cyclin; cyclin-depend 93.6 0.28 9.5E-06 45.3 9.2 84 295-379 55-140 (257)
31 3g33_B CCND3 protein; Ser/Thr 93.0 0.34 1.2E-05 46.1 9.1 83 296-379 76-160 (306)
32 1w98_B Cyclin E, G1/S-specific 93.0 0.45 1.5E-05 44.6 9.7 83 296-379 55-140 (283)
33 1jkw_A Cyclin H; cell cycle, c 92.8 0.79 2.7E-05 43.9 11.4 57 296-353 62-120 (323)
34 2w96_A G1/S-specific cyclin-D1 92.6 0.6 2.1E-05 43.3 10.0 83 296-379 62-146 (271)
35 2ivx_A Cyclin-T2; transcriptio 91.9 1 3.6E-05 41.2 10.7 58 294-352 34-91 (257)
36 1f5q_B Gamma herpesvirus cycli 91.0 0.86 2.9E-05 42.1 9.0 84 295-379 53-138 (252)
37 2i53_A Cyclin K; cell cycle, t 90.8 0.74 2.5E-05 42.2 8.4 57 295-352 45-101 (258)
38 2pk2_A Cyclin-T1, protein TAT; 89.3 0.74 2.5E-05 44.8 7.3 58 294-352 41-98 (358)
39 3m03_A ORC6, origin recognitio 78.6 8.6 0.0003 30.1 7.6 56 183-239 6-66 (95)
40 2qdj_A Retinoblastoma-associat 74.9 6.6 0.00023 37.2 7.2 64 184-247 7-74 (304)
41 3m03_A ORC6, origin recognitio 71.7 23 0.00079 27.6 8.4 77 300-379 8-89 (95)
42 2pmi_B PHO85 cyclin PHO80, ami 70.0 31 0.0011 32.4 10.5 87 293-380 76-165 (293)
43 2r7g_A PP110, retinoblastoma-a 48.5 97 0.0033 29.7 10.0 84 270-353 167-279 (347)
44 2r7g_A PP110, retinoblastoma-a 48.0 58 0.002 31.3 8.3 68 179-246 218-288 (347)
45 4ell_A Retinoblastoma-associat 47.5 61 0.0021 31.9 8.6 69 178-246 281-352 (411)
46 4elj_A Retinoblastoma-associat 42.8 48 0.0016 34.6 7.3 62 184-247 9-76 (656)
47 4elj_A Retinoblastoma-associat 36.2 1.2E+02 0.004 31.8 8.9 70 178-247 526-598 (656)
48 2wh0_Q Pkcev3, protein kinase 21.6 65 0.0022 19.0 2.3 18 271-288 12-29 (31)
49 4ell_A Retinoblastoma-associat 21.0 1.6E+02 0.0055 28.9 6.4 54 300-353 288-343 (411)
No 1
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1.2e-44 Score=343.03 Aligned_cols=230 Identities=29% Similarity=0.502 Sum_probs=208.5
Q ss_pred CCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHH
Q 016851 147 EPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAAL 226 (381)
Q Consensus 147 ~~~yft~~e~~~~sPs~~~~i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acL 226 (381)
++||||++|++ .+||+.+|++++.|..+|..+++||.++|.+|+|+++|+++|++|||||++++++.+.++++||+|||
T Consensus 3 ~~w~~t~e~l~-~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL 81 (257)
T 2ivx_A 3 SRWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTAL 81 (257)
T ss_dssp GGGSCCHHHHH-SCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred CCeeecHHHHH-hChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHH
Confidence 57999999995 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHHcC
Q 016851 227 FLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLG 306 (381)
Q Consensus 227 fLA~K~EE~p~~l~dii~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~l~ 306 (381)
|||||+||+|+++++++.++..+.++.... .....+.|...+++|+.||+.||++|||+|.++||+.||.+|++.++
T Consensus 82 ~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~---~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~ 158 (257)
T 2ivx_A 82 FLAAKVEEQARKLEHVIKVAHACLHPLEPL---LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVR 158 (257)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHCTTSCC---CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTT
T ss_pred HHHhccccCCcCHHHHHHHHHHHhccCCCC---CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhC
Confidence 999999999999999999988766543211 11234567778999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-cccccCcCHHHHHHHHHHHHHHHcCCCccc---hhhhhhhcc--cCHHHHHHHHHHHHhh
Q 016851 307 LSQTVLVNLALNLVSEGLR-SSLWLQFKPNHIAAGAAYLAAKFLNWDLAA---YQNIWHEFQ--TTPAILQDVAQQLMEL 380 (381)
Q Consensus 307 ~~~~~i~~lA~~ll~dsl~-t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~---~~~w~~~~~--~~~~~I~e~~~~Ll~L 380 (381)
.+.+ +.+.|++++++++. +..|+.|+|+.||+|||++|+.++|.++|. .++||+.++ +++++|++|+++|+++
T Consensus 159 ~~~~-~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~ 237 (257)
T 2ivx_A 159 ASKD-LAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQI 237 (257)
T ss_dssp CCHH-HHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHH
T ss_pred CCcH-HHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 8875 88999999999984 788999999999999999999999988764 357999884 8999999999999998
Q ss_pred C
Q 016851 381 F 381 (381)
Q Consensus 381 y 381 (381)
|
T Consensus 238 ~ 238 (257)
T 2ivx_A 238 L 238 (257)
T ss_dssp H
T ss_pred H
Confidence 6
No 2
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=9.2e-44 Score=336.85 Aligned_cols=228 Identities=28% Similarity=0.567 Sum_probs=205.1
Q ss_pred CCCCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHH
Q 016851 145 DDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATA 224 (381)
Q Consensus 145 ~~~~~yft~~e~~~~sPs~~~~i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~a 224 (381)
...+|||+++|+. .+||+.+|++++.|..+|..+++||.++|.+|+|+++|+++|++|||||+.++++.+.++++||+|
T Consensus 11 ~~~~w~~~~~el~-~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~a 89 (258)
T 2i53_A 11 TKPCWYWDKKDLA-HTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGAC 89 (258)
T ss_dssp CSSSCCCCGGGGG-GCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHH
T ss_pred hccCCccCHHHHH-hCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHH
Confidence 3567999999995 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCChHHHHHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHH
Q 016851 225 ALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNK 304 (381)
Q Consensus 225 cLfLA~K~EE~p~~l~dii~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~ 304 (381)
|||||||+||+|+++++++.++..++.+..... ..+..+++|+.||+.||++|||++.+++|+.||.+|++.
T Consensus 90 cL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~ 161 (258)
T 2i53_A 90 CLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQ--------FGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQ 161 (258)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHGG--------GCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHT
T ss_pred HHHHHHccccccccHHHHHHHHHHHhchhhhhh--------hhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHH
Confidence 999999999999999999998865543221100 011257899999999999999999999999999999999
Q ss_pred cCCCHH---HHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccc------hhhhhhhc--ccCHHHHHHH
Q 016851 305 LGLSQT---VLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAA------YQNIWHEF--QTTPAILQDV 373 (381)
Q Consensus 305 l~~~~~---~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~------~~~w~~~~--~~~~~~I~e~ 373 (381)
++.+.+ .+.+.|++++++++.+..++.|+|+.||+|||++|+++++.+++. ..+||..| ++++++|++|
T Consensus 162 l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~ 241 (258)
T 2i53_A 162 LKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDI 241 (258)
T ss_dssp BCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHH
T ss_pred hCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHH
Confidence 988763 588999999999999999999999999999999999999987654 34699998 7999999999
Q ss_pred HHHHHhhC
Q 016851 374 AQQLMELF 381 (381)
Q Consensus 374 ~~~Ll~Ly 381 (381)
+++|+++|
T Consensus 242 ~~~il~ly 249 (258)
T 2i53_A 242 CHQILDLY 249 (258)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHH
Confidence 99999997
No 3
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.7e-43 Score=339.04 Aligned_cols=226 Identities=23% Similarity=0.333 Sum_probs=203.6
Q ss_pred CCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHH
Q 016851 147 EPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAAL 226 (381)
Q Consensus 147 ~~~yft~~e~~~~sPs~~~~i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acL 226 (381)
+.|+||++|+++..+...++++++.|..+|..+++||.++|.+|+|+++|+++|++|||||++++++.+.++++||+|||
T Consensus 14 ~~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acL 93 (285)
T 3rgf_B 14 LQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCV 93 (285)
T ss_dssp HHHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHH
T ss_pred CCcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHH
Confidence 46999999998876668899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCC-hHHHHHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHHc
Q 016851 227 FLAAKSEETPRP-LNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKL 305 (381)
Q Consensus 227 fLA~K~EE~p~~-l~dii~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~l 305 (381)
|||||+||++++ +++++.++..+...... + ...+.|+..+++|+.||+.||++|||+|.+++|+.||.+|++.+
T Consensus 94 fLA~K~EE~~~~~~~di~~~~~~~~k~~~~----~-~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l 168 (285)
T 3rgf_B 94 FLASKVEEFGVVSNTRLIAAATSVLKTRFS----Y-AFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM 168 (285)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHHHHHCT----T-TCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred HHHHhhhccccccHHHHHHHHHHHHccccc----c-cCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHh
Confidence 999999999874 89999888765432211 1 11222345689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcccCHHHHHHHHHHHHhhC
Q 016851 306 GLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLMELF 381 (381)
Q Consensus 306 ~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~~~~~~I~e~~~~Ll~Ly 381 (381)
+.+. .+.++|+.++++++.++.|+.|+|+.||+||||+|+.+++.+. .+||+.+++++++|++|+++|++||
T Consensus 169 ~~~~-~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~~~~~~~~l~~~~~~il~ly 240 (285)
T 3rgf_B 169 GQED-MLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA---RQWFAELSVDMEKILEIIRVILKLY 240 (285)
T ss_dssp TCHH-HHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC---HHHHHTSCSCHHHHHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh---hhHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9865 4899999999999999999999999999999999999999765 4799999999999999999999987
No 4
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=4.3e-43 Score=347.49 Aligned_cols=233 Identities=28% Similarity=0.481 Sum_probs=209.1
Q ss_pred CCCCCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhH
Q 016851 144 EDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIAT 223 (381)
Q Consensus 144 ~~~~~~yft~~e~~~~sPs~~~~i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~ 223 (381)
.+...|||+++|++ .+||+.++++++.|..+|..+++||.+++.+|+|+++|+++|++|||||++++++.+.++++||+
T Consensus 7 ~~~~~wlft~eeL~-~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~ 85 (358)
T 2pk2_A 7 NNNKRWYFTREQLE-NSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAP 85 (358)
T ss_dssp -CCSSSSCCSHHHH-TCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHH
T ss_pred CCCCCceeCHHHHH-hChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 34578999999995 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCChHHHHHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHH
Q 016851 224 AALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILN 303 (381)
Q Consensus 224 acLfLA~K~EE~p~~l~dii~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~ 303 (381)
||||||||+||+|+++++|+.++..+.++.... .....+.|+..+++|+.||+.||++|+|+|.+++|+.||..|++
T Consensus 86 acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~---~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~ 162 (358)
T 2pk2_A 86 AALFLAAKVEEQPKKLEHVIKVAHTCLHPQESL---PDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQ 162 (358)
T ss_dssp HHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCC---CCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHH
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHhcccccc---ccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHH
Confidence 999999999999999999999887765443221 11234567777899999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHHHhc-cccccCcCHHHHHHHHHHHHHHHcCCCccc---hhhhhhhcc--cCHHHHHHHHHHH
Q 016851 304 KLGLSQTVLVNLALNLVSEGLR-SSLWLQFKPNHIAAGAAYLAAKFLNWDLAA---YQNIWHEFQ--TTPAILQDVAQQL 377 (381)
Q Consensus 304 ~l~~~~~~i~~lA~~ll~dsl~-t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~---~~~w~~~~~--~~~~~I~e~~~~L 377 (381)
.++.+.+ +.++|++++++++. +.+++.|+|+.||+||||+|+.+++.++|. ..+||+.|+ +++++|++|+++|
T Consensus 163 ~l~~~~~-l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~i 241 (358)
T 2pk2_A 163 LVRASKD-LAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEF 241 (358)
T ss_dssp HTTCCHH-HHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHH
T ss_pred HcCCCHH-HHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHH
Confidence 9998865 89999999999984 788999999999999999999999987764 357999985 8999999999999
Q ss_pred HhhC
Q 016851 378 MELF 381 (381)
Q Consensus 378 l~Ly 381 (381)
+++|
T Consensus 242 l~~y 245 (358)
T 2pk2_A 242 LQIL 245 (358)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9987
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-41 Score=315.96 Aligned_cols=211 Identities=21% Similarity=0.312 Sum_probs=188.4
Q ss_pred CCCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCc-cchhhhhHH
Q 016851 146 DEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHAC-HDRFIIATA 224 (381)
Q Consensus 146 ~~~~yft~~e~~~~sPs~~~~i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~-~~~~lva~a 224 (381)
.+.|+||++|+++. |+..+ .+ |..+++||.++|..|+|+++|+++|++|||||++++++.+ .++++||+|
T Consensus 7 ~~~w~ft~~~l~~~-~~~~~-----~~---R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~a 77 (235)
T 1zp2_A 7 LTQLFLSTDLESLE-PTCLS-----KD---TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVAT 77 (235)
T ss_dssp GTGGGSCSSCTTSS-CCCSC-----HH---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHH
T ss_pred CCCCccCHHHHHHC-Ccchh-----HH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHH
Confidence 35799999999754 44322 12 9999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhhhccCCCCChHHHHHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHH
Q 016851 225 ALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNK 304 (381)
Q Consensus 225 cLfLA~K~EE~p~~l~dii~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~ 304 (381)
|||||||+||+|+++++++.++.++.. +.+...+++|+.||+.||++|||++.+++|+.||.+|++.
T Consensus 78 cL~lA~K~Ee~~~~l~d~~~~~~~~~~-------------~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~ 144 (235)
T 1zp2_A 78 CIYLSCKVEECPVHIRTICNEANDLWS-------------LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHD 144 (235)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHTTCC-------------CSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHT
T ss_pred HHHHHhccccCcccHHHHHHHHHHHcc-------------chhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHH
Confidence 999999999999999999998765431 0122358899999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcccCHHHHHHHHHHHHhhC
Q 016851 305 LGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLMELF 381 (381)
Q Consensus 305 l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~~~~~~I~e~~~~Ll~Ly 381 (381)
++.+.+ +.+.|+.++++++.+..++.|+|+.||+||||+|+.+++.++|.+.+||+ ++++++|.+|+++|+++|
T Consensus 145 ~~~~~~-~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~i~~ly 218 (235)
T 1zp2_A 145 GIINQK-QLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLLDLIK--STDAFKVILCVQRIISIY 218 (235)
T ss_dssp TSSCHH-HHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHCC--HHHHHHHHHHHHHHHHHH
T ss_pred cCCCHH-HHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCCCcchhh--cCCHHHHHHHHHHHHHHH
Confidence 988875 88999999999999999999999999999999999999887776677887 899999999999999986
No 6
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=4.1e-37 Score=300.90 Aligned_cols=220 Identities=22% Similarity=0.291 Sum_probs=188.2
Q ss_pred CCCCccccH-HHHHHh------------------CCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Q 016851 145 DDEPVFMSR-DEIERF------------------SPSRKDGIDALRETHLRYSYCAFIQNLGLRLE--LPQTTIGTAMVL 203 (381)
Q Consensus 145 ~~~~~yft~-~e~~~~------------------sPs~~~~i~~~~e~~~R~~~v~~I~~v~~~L~--L~~~t~~~Ai~~ 203 (381)
+.+.|.|++ +++.+. .++..++++++.|..+|..+++||.++|.+|+ ||++|+++|++|
T Consensus 7 q~~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~ 86 (323)
T 1jkw_A 7 QKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMY 86 (323)
T ss_dssp ----CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 456799985 666532 36788999999999999999999999999999 999999999999
Q ss_pred HHHHhccCCcCccchhhhhHHHHHHhhhccCCCCChHHHHHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHH
Q 016851 204 CHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILT 283 (381)
Q Consensus 204 fdRF~~~~si~~~~~~lva~acLfLA~K~EE~p~~l~dii~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~ 283 (381)
|||||+.+++.++++++||+||||||||+||+|+++++++..+. . .......++++|+.||+.||+
T Consensus 87 ~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~-----~---------~p~~~~~~~~~Il~~E~~iL~ 152 (323)
T 1jkw_A 87 FKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLR-----E---------SPLGQEKALEQILEYELLLIQ 152 (323)
T ss_dssp HHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSS-----S---------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhc-----c---------ChhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876431 0 011123468999999999999
Q ss_pred HcCcccccCChHHHHHHHHHHc-----CC-CHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchh
Q 016851 284 TLNFELNVQHPYDPLTSILNKL-----GL-SQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQ 357 (381)
Q Consensus 284 ~L~FdL~v~tP~~~L~~~l~~l-----~~-~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~ 357 (381)
+|+|+|.++||+.||..|+..+ ++ ..+.+.+.|+.++++++.++.|+.|+|+.||+||||+|+..++.+++
T Consensus 153 ~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~--- 229 (323)
T 1jkw_A 153 QLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITME--- 229 (323)
T ss_dssp HTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCT---
T ss_pred HCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChH---
Confidence 9999999999999999999765 23 23458899999999999999999999999999999999999998876
Q ss_pred hhhhh-cc-----cCHHHHHHHHHHHHhhC
Q 016851 358 NIWHE-FQ-----TTPAILQDVAQQLMELF 381 (381)
Q Consensus 358 ~w~~~-~~-----~~~~~I~e~~~~Ll~Ly 381 (381)
.|+.. +. ++.++|.+++++|.+||
T Consensus 230 ~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~ 259 (323)
T 1jkw_A 230 SYLSESLMLKENRTCLSQLLDIMKSMRNLV 259 (323)
T ss_dssp THHHHHTTSCSSSCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccccHHHHHHHHHHHHHHH
Confidence 47764 33 47899999999998875
No 7
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=293.14 Aligned_cols=202 Identities=16% Similarity=0.170 Sum_probs=177.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCC-CCCh
Q 016851 161 PSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPL 239 (381)
Q Consensus 161 Ps~~~~i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~-p~~l 239 (381)
|+...+++++.+..+|..+++||.+|+..|+|+++|+++|++|||||+++.++.+.++++||+||||||||+||. |+.+
T Consensus 56 ~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~ 135 (306)
T 3g33_B 56 ASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTI 135 (306)
T ss_dssp SCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCT
T ss_pred cHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCH
Confidence 445667888899999999999999999999999999999999999999999999999999999999999999996 7789
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHHcCCCH---HHHHHHH
Q 016851 240 NDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQ---TVLVNLA 316 (381)
Q Consensus 240 ~dii~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~l~~~~---~~i~~lA 316 (381)
++++..+...+ ++++|++||+.||++|+|+|.++||+.||..|++.++.+. ..+.+.|
T Consensus 136 ~~l~~~~~~~~-------------------~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a 196 (306)
T 3g33_B 136 EKLCIYTDHAV-------------------SPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHA 196 (306)
T ss_dssp THHHHHTTTSS-------------------CHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHH
T ss_pred HHHHHHhccCc-------------------cHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHH
Confidence 99888764322 4889999999999999999999999999999999987653 2356789
Q ss_pred HHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhc----ccCHHHHHHHHHHHHhhC
Q 016851 317 LNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEF----QTTPAILQDVAQQLMELF 381 (381)
Q Consensus 317 ~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~----~~~~~~I~e~~~~Ll~Ly 381 (381)
++++++++.+..++.|+|+.||+|||++|+..++........|+..+ ++++++|++|+++|+++|
T Consensus 197 ~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~ 265 (306)
T 3g33_B 197 QTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAAL 265 (306)
T ss_dssp HHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999985433224566654 699999999999999875
No 8
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=1.5e-35 Score=281.25 Aligned_cols=190 Identities=21% Similarity=0.241 Sum_probs=172.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCC-CCChHHHHHHH
Q 016851 168 DALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRAS 246 (381)
Q Consensus 168 ~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~-p~~l~dii~~~ 246 (381)
+++....+|..+++||.+++..|+|+++|+++|++|+|||+++.++.+.+++++|+||||||||+||. |+++++++.++
T Consensus 31 q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~ 110 (260)
T 2cch_B 31 QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYIT 110 (260)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999998 89999998865
Q ss_pred HHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Q 016851 247 SELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRS 326 (381)
Q Consensus 247 ~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t 326 (381)
... .++++|++||+.||++|+|++.++||+.||..|++.++.+...+.++|++++++++.+
T Consensus 111 ~~~-------------------~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~ 171 (260)
T 2cch_B 111 DDT-------------------YTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLID 171 (260)
T ss_dssp TSS-------------------SCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHC
T ss_pred cCC-------------------cCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Confidence 421 1488999999999999999999999999999999999877645889999999999988
Q ss_pred cc-ccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhc----ccCHHHHHHHHHHHHhhC
Q 016851 327 SL-WLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEF----QTTPAILQDVAQQLMELF 381 (381)
Q Consensus 327 ~~-~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~----~~~~~~I~e~~~~Ll~Ly 381 (381)
.. ++.|+|+.||+|||++|+..++. +.|+..+ ++++++|.+|++.|.++|
T Consensus 172 ~~~~~~~~Ps~iAaAai~lA~~~~~~-----~~w~~~l~~~~g~~~~~i~~~~~~l~~~~ 226 (260)
T 2cch_B 172 ADPYLKYLPSVIAGAAFHLALYTVTG-----QSWPESLIRKTGYTLESLKPCLMDLHQTY 226 (260)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHS-----CCSCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhCC-----CcchHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 87 99999999999999999999875 3577654 699999999999998864
No 9
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=1.4e-35 Score=283.04 Aligned_cols=205 Identities=17% Similarity=0.207 Sum_probs=176.0
Q ss_pred HhCCCC--cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCC
Q 016851 158 RFSPSR--KDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (381)
Q Consensus 158 ~~sPs~--~~~i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~ 235 (381)
+..|+. ..+++++....+|..+++||.+++.+++++++|+++|++|+|||+++.++.+.+++++|+||||||||+||.
T Consensus 37 ~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~ 116 (271)
T 2w96_A 37 TCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKET 116 (271)
T ss_dssp HTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCS
T ss_pred HhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhc
Confidence 344443 334566778899999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCChHHHHHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHHcCCCHHH---
Q 016851 236 -PRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTV--- 311 (381)
Q Consensus 236 -p~~l~dii~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~l~~~~~~--- 311 (381)
|+++++++..+... .++++|++||+.||++|+|++.++||+.||..|++.++.+.+.
T Consensus 117 ~p~~~~~~~~~~~~~-------------------~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~ 177 (271)
T 2w96_A 117 IPLTAEKLCIYTDNS-------------------IRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQI 177 (271)
T ss_dssp SCCCHHHHHHHTTTS-------------------SCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHH
T ss_pred CCCCHHHHHHHhcCC-------------------CCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHH
Confidence 89999988765321 2588999999999999999999999999999999999887642
Q ss_pred HHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhh--------hcccCHHHHHHHHHHHHhhC
Q 016851 312 LVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWH--------EFQTTPAILQDVAQQLMELF 381 (381)
Q Consensus 312 i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~--------~~~~~~~~I~e~~~~Ll~Ly 381 (381)
+.+.|+.++++++.+..++.|+|+.||+|||++|+..++.+.+..+.|+. ..++++++|++|.++|.++|
T Consensus 178 ~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~ 255 (271)
T 2w96_A 178 IRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALL 255 (271)
T ss_dssp HHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34679999999998988999999999999999999988753332233443 25799999999999999875
No 10
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.1e-35 Score=278.71 Aligned_cols=205 Identities=16% Similarity=0.164 Sum_probs=176.1
Q ss_pred HhCCCC--cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCC
Q 016851 158 RFSPSR--KDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (381)
Q Consensus 158 ~~sPs~--~~~i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~ 235 (381)
+..|+. ..+.+++....+|..+++||.+++..++|+++|+++|++|+|||+++.++.+.+++++|+||||||||+||.
T Consensus 31 ~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~ 110 (257)
T 1g3n_C 31 RFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSL 110 (257)
T ss_dssp GGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCS
T ss_pred HhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccc
Confidence 345543 223566677889999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CCChHHHHHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHHcCCCHH---H
Q 016851 236 -PRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT---V 311 (381)
Q Consensus 236 -p~~l~dii~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~l~~~~~---~ 311 (381)
|+++++++.++... .++++|++||+.||++|+|++.++||+.||..|++.++.+.+ .
T Consensus 111 ~~p~~~d~~~~~~~~-------------------~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~ 171 (257)
T 1g3n_C 111 TPISTSSLCYAAADS-------------------FSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDF 171 (257)
T ss_dssp SCCCHHHHHHHTTTC-------------------SCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHH
T ss_pred cCCCHHHHHHHHCCC-------------------CCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHH
Confidence 88999998876422 248899999999999999999999999999999999987643 3
Q ss_pred HHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccch-hhhhhhc----ccCHHHHHHHHHHHHhhC
Q 016851 312 LVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAY-QNIWHEF----QTTPAILQDVAQQLMELF 381 (381)
Q Consensus 312 i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~-~~w~~~~----~~~~~~I~e~~~~Ll~Ly 381 (381)
+.+.|++++++++.+..++.|+|+.||+|||++|...++.+.+.. +.|+..+ ++++++|.+|++.|.++|
T Consensus 172 ~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 172 WHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSV 246 (257)
T ss_dssp HHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999998653221 3466654 699999999999999874
No 11
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1.1e-34 Score=274.47 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=169.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCC-CCChHHH
Q 016851 164 KDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDV 242 (381)
Q Consensus 164 ~~~i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~-p~~l~di 242 (381)
....+++....+|..+++||.+++..++|+++|+++|++|+|||++++++.+.++|++|+||||||||+||. |++++++
T Consensus 40 ~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~ 119 (254)
T 2f2c_A 40 LWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKL 119 (254)
T ss_dssp TTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred hhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHH
Confidence 344677888999999999999999999999999999999999999999999999999999999999999996 8889998
Q ss_pred HHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHHcCCCHH---HHHHHHHHH
Q 016851 243 LRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT---VLVNLALNL 319 (381)
Q Consensus 243 i~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~l~~~~~---~i~~lA~~l 319 (381)
+..+... .++++|++||+.||++|+|++.++||+.||..|++.++.+.+ .+.+.|+++
T Consensus 120 ~~~~~~~-------------------~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~l 180 (254)
T 2f2c_A 120 TYLSCDC-------------------FTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTT 180 (254)
T ss_dssp STTC----------------------CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred HHHhCCC-------------------CCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHH
Confidence 7765432 258899999999999999999999999999999999988753 245689999
Q ss_pred HHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhh----hcccCHHHHHHHHHHHHhhC
Q 016851 320 VSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWH----EFQTTPAILQDVAQQLMELF 381 (381)
Q Consensus 320 l~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~----~~~~~~~~I~e~~~~Ll~Ly 381 (381)
+++++.+..++.|+|+.||+|||++|....+.....|.+|.. ..++++++|.+|.+.|.+++
T Consensus 181 l~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 181 ICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp HHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985221101111122 25689999999999998863
No 12
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=8.4e-35 Score=277.61 Aligned_cols=187 Identities=23% Similarity=0.249 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCC-CCChHHHHHHHHH
Q 016851 170 LRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRASSE 248 (381)
Q Consensus 170 ~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~-p~~l~dii~~~~~ 248 (381)
+.+..+|..+++||.+++.+++|+++|+++|+.|+|||++..++.+.+++++|+||||||||+||. |+++++++.++..
T Consensus 32 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~ 111 (269)
T 2b9r_A 32 EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDN 111 (269)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcC
Confidence 667889999999999999999999999999999999999999999999999999999999999998 7889999876532
Q ss_pred HHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccc
Q 016851 249 LYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSL 328 (381)
Q Consensus 249 ~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~ 328 (381)
. .++++|++||+.||++|+|++.++||++||.+|++.++.+.+ +..+|++++++++.+..
T Consensus 112 ~-------------------~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~-~~~~a~~l~e~sl~~~~ 171 (269)
T 2b9r_A 112 T-------------------YTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVE-QHTLAKYLMELTMLDYD 171 (269)
T ss_dssp S-------------------SCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHH-HHHHHHHHHHHGGGCGG
T ss_pred C-------------------CCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhhh
Confidence 1 148899999999999999999999999999999999888764 78899999999999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhh----cccCHHHHHHHHHHHHhhC
Q 016851 329 WLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHE----FQTTPAILQDVAQQLMELF 381 (381)
Q Consensus 329 ~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~----~~~~~~~I~e~~~~Ll~Ly 381 (381)
++.|+|+.||+|||++|+.+++.+ .|+.. .++++++|.+|++.|.+++
T Consensus 172 ~~~~~Ps~iAaAai~lA~~~l~~~-----~w~~~l~~~tg~~~~~l~~~~~~l~~~~ 223 (269)
T 2b9r_A 172 MVHFPPSQIAAGAFSLALKILDNG-----EWTPTLQHYLSYTEESLLPVMQHLAKNV 223 (269)
T ss_dssp GSSSCTTHHHHHHHHHHHHHHTCC-----CSCTTHHHHSCCCSSTTTTHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 46654 4699999999999998763
No 13
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.9e-33 Score=262.02 Aligned_cols=198 Identities=16% Similarity=0.121 Sum_probs=169.5
Q ss_pred HhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCC-C
Q 016851 158 RFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-P 236 (381)
Q Consensus 158 ~~sPs~~~~i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~-p 236 (381)
+..| ...+++....+|..+++||.+|+..++|.++|+++|++|+|||+++.++.+.++|++|+||||||||+||. |
T Consensus 34 ~~~p---~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p 110 (252)
T 1f5q_B 34 RMVG---VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMP 110 (252)
T ss_dssp HHSS---SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSC
T ss_pred HhCc---CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566 45678888999999999999999999999999999999999999999999999999999999999999997 7
Q ss_pred CChHHHHHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHHcCCCHH---HHH
Q 016851 237 RPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT---VLV 313 (381)
Q Consensus 237 ~~l~dii~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~l~~~~~---~i~ 313 (381)
+++++++..+... .++++|++||+.||++|+|++.++||+.||..|++.++.+.+ .+.
T Consensus 111 ~~~~~l~~~~~~~-------------------yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~ 171 (252)
T 1f5q_B 111 IKATQLAYLCGGA-------------------TTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIY 171 (252)
T ss_dssp CCHHHHHHHHCTT-------------------CCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHHhCCC-------------------CCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHH
Confidence 7899998876432 258899999999999999999999999999999999988754 356
Q ss_pred HHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhh----hhhcccCHHHHHHHHHHHHhh
Q 016851 314 NLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNI----WHEFQTTPAILQDVAQQLMEL 380 (381)
Q Consensus 314 ~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w----~~~~~~~~~~I~e~~~~Ll~L 380 (381)
..|+++++.++.+..++.|+||.||+||+.++. +...+.+.+| ....++++++|.+|.+.|.++
T Consensus 172 ~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l---~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~ 239 (252)
T 1f5q_B 172 NLCRPKIFCALCDGRSAMKRPVLITLACMHLTM---NQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIA 239 (252)
T ss_dssp HHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh---ccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999965554 3322222222 234669999999999998865
No 14
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=7e-32 Score=259.23 Aligned_cols=187 Identities=16% Similarity=0.146 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCcCccchhhhhHHHHHHhhhccCC-CCChHHHHHH
Q 016851 168 DALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVR-RSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRA 245 (381)
Q Consensus 168 ~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~-~si~~~~~~lva~acLfLA~K~EE~-p~~l~dii~~ 245 (381)
+++....+|..+++||.+++.+++|+++|+++|+.|+|||++. .++.+.+++++|+||||||||+||. ++++++++.+
T Consensus 42 q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i 121 (283)
T 1w98_B 42 HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYV 121 (283)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 4556778999999999999999999999999999999999998 6899999999999999999999998 8889998876
Q ss_pred HHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHHcCCCHH----------HHHHH
Q 016851 246 SSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT----------VLVNL 315 (381)
Q Consensus 246 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~l~~~~~----------~i~~l 315 (381)
+... .++++|++||+.||++|+|++.++||+.||..|++.++.++. .....
T Consensus 122 ~~~~-------------------~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~ 182 (283)
T 1w98_B 122 TDGA-------------------CSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQ 182 (283)
T ss_dssp TTTS-------------------SCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHH
T ss_pred HcCC-------------------CCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHH
Confidence 5321 258899999999999999999999999999999998765321 12234
Q ss_pred HHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcccCHHHHHHHHHHHHhhC
Q 016851 316 ALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLMELF 381 (381)
Q Consensus 316 A~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~~~~~~I~e~~~~Ll~Ly 381 (381)
+.+++++++.+..++.|+|+.||+|||++|+. .+.|....|+++++|.+|.+.|..++
T Consensus 183 ~~~llelsl~d~~~l~~~PS~iAaAai~la~~--------~~~l~~~tg~~~~~i~~c~~~l~~~~ 240 (283)
T 1w98_B 183 IAELLDLCVLDVDCLEFPYGILAASALYHFSS--------SELMQKVSGYQWCDIENCVKWMVPFA 240 (283)
T ss_dssp HHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC--------HHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC--------hHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999863 24678889999999999999998763
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.97 E-value=1e-30 Score=239.68 Aligned_cols=181 Identities=17% Similarity=0.222 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCCCCChHHHHHHHHHHHhhhhh
Q 016851 176 RYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNI 255 (381)
Q Consensus 176 R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~p~~l~dii~~~~~~~~k~~~ 255 (381)
...++++|.++|..|+||+.|+.+|+.|||||+..+++++.+.++|++||||+|||+||.|++++||+.++.
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~-------- 76 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-------- 76 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS--------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC--------
Confidence 348899999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred hhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCcCHH
Q 016851 256 TLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPN 335 (381)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps 335 (381)
..+.+|..+|+.||+.|+|++.+++|+.||.+|++.++++.+ +.+.|+.++++++.+.++++++|+
T Consensus 77 -------------~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~-~~~~A~~i~~~~~~~~l~~g~~P~ 142 (207)
T 1c9b_A 77 -------------ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ-VQMAATHIARKAVELDLVPGRSPI 142 (207)
T ss_dssp -------------SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHTTCSTTCCHH
T ss_pred -------------CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHcCccCCCChH
Confidence 126678899999999999999999999999999999999875 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCccchhhhhhhcccCHHHHHHHHHHHHh
Q 016851 336 HIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLME 379 (381)
Q Consensus 336 ~IAaAaI~lA~~~~~~~l~~~~~w~~~~~~~~~~I~e~~~~Ll~ 379 (381)
.||+||||+|++++|.+.+. .+|+...++++.+|..+.++|.+
T Consensus 143 ~IAaAaiylA~~~~~~~~~~-~~i~~~~~v~~~tI~~~~~~l~~ 185 (207)
T 1c9b_A 143 SVAAAAIYMASQASAEKRTQ-KEIGDIAGVADVTIRQSYRLIYP 185 (207)
T ss_dssp HHHHHHHHHHHHTSSSCCCH-HHHHHHHTCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHCCCCCH-HHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999987654 58999999999999999998865
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.94 E-value=3.5e-26 Score=208.30 Aligned_cols=184 Identities=17% Similarity=0.234 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCCCCChHHHHHHHHHHHh
Q 016851 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYH 251 (381)
Q Consensus 172 e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~p~~l~dii~~~~~~~~ 251 (381)
|..++ .++++|.++|..|+||+.+..+|+.||+||+....+++.+...+++||||+|||.|+.|++++||+.++.
T Consensus 6 er~l~-~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~---- 80 (200)
T 1ais_B 6 ERNLA-FALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR---- 80 (200)
T ss_dssp --CHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTT----
T ss_pred HHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHC----
Confidence 34444 8999999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred hhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCccccc--CChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccc
Q 016851 252 KQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNV--QHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLW 329 (381)
Q Consensus 252 k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v--~tP~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~ 329 (381)
..+.+|..+|+.|++.|||++.+ .+|+.||.+|+..++++.+ +.+.|+.+++++..+..+
T Consensus 81 -----------------v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~-v~~~A~~i~~~~~~~~~~ 142 (200)
T 1ais_B 81 -----------------VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEK-VRRRAIEILDEAYKRGLT 142 (200)
T ss_dssp -----------------SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHH-HHHHHHHHHHHHHHTTCC
T ss_pred -----------------CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHcCcc
Confidence 13678899999999999999999 9999999999999999975 889999999999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcccCHHHHHHHHHHHHh
Q 016851 330 LQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLME 379 (381)
Q Consensus 330 L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~~~~~~I~e~~~~Ll~ 379 (381)
.+++|+.||+||||+|++++|.+.+. +++....++++.+|..+.++|.+
T Consensus 143 ~gr~P~~iAaAaly~A~~~~~~~~t~-~ei~~~~~vs~~ti~~~~~~l~~ 191 (200)
T 1ais_B 143 SGKSPAGLVAAALYIASLLEGEKRTQ-REVAEVARVTEVTVRNRYKELVE 191 (200)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCCCH-HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCCCH-HHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999987543 57888899999999999999875
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.9e-24 Score=210.75 Aligned_cols=181 Identities=14% Similarity=0.104 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCCCCChHHHHHHHHHHHhhhhhh
Q 016851 177 YSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNIT 256 (381)
Q Consensus 177 ~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~p~~l~dii~~~~~~~~k~~~~ 256 (381)
..+...|.++|..|+||+.++.+|+.||+|++....+++.....|++||||+|||.|+.|+++++|+.++.
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~--------- 197 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH--------- 197 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS---------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC---------
Confidence 37889999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred hhcccCChhHHhHHHHHHHHHHHHHHHHcC------------cccccCChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 016851 257 LLSYLLPIDWFEQYRERVIEAEQMILTTLN------------FELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGL 324 (381)
Q Consensus 257 ~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~------------FdL~v~tP~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl 324 (381)
..+.+|..+++.|++.|+ |++.+.+|+.||.+|++.++++.+ +.+.|+.+++++.
T Consensus 198 ------------v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~-v~~~A~~i~~~~~ 264 (345)
T 3k7a_M 198 ------------VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-VTTSAEYTAKKCK 264 (345)
T ss_dssp ------------CCSHHHHHHHHHHHHHHTCC------------------------------------------------
T ss_pred ------------CCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHH
Confidence 125678889999999998 999999999999999999999864 8999999999999
Q ss_pred ccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcccCHHHHHHHHHHHHhh
Q 016851 325 RSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLMEL 380 (381)
Q Consensus 325 ~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~~~~~~I~e~~~~Ll~L 380 (381)
.+.++..++|..||+||||+|+.+++.+.+. ++|....++++..|+.+.++|.+.
T Consensus 265 ~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~-~eIa~~~~Vse~TIr~~ykel~~~ 319 (345)
T 3k7a_M 265 EIKEIAGKSPITIAVVSIYLNILLFQIPITA-AKVGQTLQVTEGTIKSGYKILYEH 319 (345)
T ss_dssp --------------------------------------------------------
T ss_pred HhchhcCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987653 689999999999999998888763
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.74 E-value=1.6e-18 Score=170.61 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCCCCChHHHHHHHHHHHhhhhhh
Q 016851 177 YSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNIT 256 (381)
Q Consensus 177 ~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~p~~l~dii~~~~~~~~k~~~~ 256 (381)
..+...|.++|..|+||..+..+|+.+|++++....+++.....|++||||+|||.++.|+++++|..++. +
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~-v------- 198 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH-V------- 198 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHT-C-------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhC-C-------
Confidence 36778899999999999999999999999999999999999999999999999999999999999988763 1
Q ss_pred hhcccCChhHHhHHHHHHHHHHHHHHHHcCcc------------cccCChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 016851 257 LLSYLLPIDWFEQYRERVIEAEQMILTTLNFE------------LNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGL 324 (381)
Q Consensus 257 ~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~Fd------------L~v~tP~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl 324 (381)
.+.+|....+.|++.|+.. +...+|..|+.+|+..|+++.+ +...|+.++..+.
T Consensus 199 -------------~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~-v~~~A~~i~~~~~ 264 (345)
T 4bbr_M 199 -------------KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-VTTSAEYTAKKCK 264 (345)
T ss_dssp -------------CTTHHHHHHHHHHHCC---------------------------------------------------
T ss_pred -------------CHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHH
Confidence 2456778888899999864 6778999999999999999875 8889999999999
Q ss_pred ccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcccCHHHHHHHHHHHHh
Q 016851 325 RSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLME 379 (381)
Q Consensus 325 ~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~~~~~~I~e~~~~Ll~ 379 (381)
...+....+|..||+||||+|+.+++..... ++.-+..++++..|+...++|.+
T Consensus 265 ~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~-~eIa~v~~Vse~TIr~rykel~~ 318 (345)
T 4bbr_M 265 EIKEIAGKSPITIAVVSIYLNILLFQIPITA-AKVGQTLQVTEGTIKSGYKILYE 318 (345)
T ss_dssp -------------------------------------------------------
T ss_pred hcccccCCChHHHHHHHHHHHHHHhCCCCCH-HHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888889999999999999999999987653 56777777888777777776654
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.73 E-value=0.00013 Score=69.26 Aligned_cols=103 Identities=9% Similarity=-0.012 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC---CcCccchhhhhHHHHHHhhhccC-CCCChHHHHHHHHHHHhhhh
Q 016851 179 YCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRR---SHACHDRFIIATAALFLAAKSEE-TPRPLNDVLRASSELYHKQN 254 (381)
Q Consensus 179 ~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~---si~~~~~~lva~acLfLA~K~EE-~p~~l~dii~~~~~~~~k~~ 254 (381)
+-+||.++.+.-+++..++-.|++|+||+.... .+.....+-+.++||.+|+|+-+ ....-+....+..
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgG------- 149 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGG------- 149 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHT-------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccC-------
Confidence 456788899999999999999999999998753 23456678889999999999654 4444444444321
Q ss_pred hhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHH
Q 016851 255 ITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILN 303 (381)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~ 303 (381)
-..+++-.||+..|..|+|+|.+.. ..|..-+++
T Consensus 150 --------------isl~ELN~LE~eFL~lLdf~L~V~~-ee~~~cy~E 183 (293)
T 2pmi_B 150 --------------VRCHELNILENDFLKRVNYRIIPRD-HNITLCSIE 183 (293)
T ss_dssp --------------SCHHHHHHHHHHHHHTTTTCCSCCT-THHHHHHHH
T ss_pred --------------cCHHHHHHHHHHHHHHcCCceeeCH-HHHHHHHHH
Confidence 1377899999999999999998774 344444444
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.66 E-value=0.00016 Score=64.79 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCCCCChHHHHHHHHHHHhhhhhhhhc
Q 016851 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLS 259 (381)
Q Consensus 180 v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~p~~l~dii~~~~~~~~k~~~~~~~ 259 (381)
.++|.+++..|+|+.++.-+|..++.+.....-..+..+..+++||||+||+....++..+++..++.-
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~v----------- 177 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARV----------- 177 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCC-----------
Confidence 467889999999999999999999999998777888999999999999999999999999998776531
Q ss_pred ccCChhHHhHHHHHHHHHHHHHHHHcCccc
Q 016851 260 YLLPIDWFEQYRERVIEAEQMILTTLNFEL 289 (381)
Q Consensus 260 ~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL 289 (381)
....|...=+.|.+.||.++
T Consensus 178 ----------s~~ti~~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 178 ----------TEVTVRNRYKELVEKLKIKV 197 (200)
T ss_dssp ----------CHHHHHHHHHHHHHHHTCCC
T ss_pred ----------CHHHHHHHHHHHHHHcCCCC
Confidence 23455556666777777654
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=96.97 E-value=0.0022 Score=57.55 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCCCCChHHHHHHH
Q 016851 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (381)
Q Consensus 180 v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~p~~l~dii~~~ 246 (381)
..+|.+++..|+++.++..+|..++.+-....-..++.+..||+||||+||+..+.++..+++..++
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~ 169 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIA 169 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHh
Confidence 5677889999999999999999999998887767789999999999999999999888888886654
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=95.26 E-value=0.073 Score=51.73 Aligned_cols=86 Identities=8% Similarity=0.046 Sum_probs=69.6
Q ss_pred CChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcccCHHHHH
Q 016851 292 QHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQ 371 (381)
Q Consensus 292 ~tP~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~~~~~~I~ 371 (381)
...+..|..++..+++++. +...|..+....+.....-..+...||+||||+|++..+.+.. ..+....++++..+|.
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~-v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prt-l~eI~~~~~v~~keig 204 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKI-VKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVART-FKEIQSLIHVKTKEFG 204 (345)
T ss_dssp THHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCC-HHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCcc-HHHHHHHhCCCHHHHH
Confidence 3466678888899999985 8888998888877666666788999999999999999987643 2567778888988888
Q ss_pred HHHHHHHh
Q 016851 372 DVAQQLME 379 (381)
Q Consensus 372 e~~~~Ll~ 379 (381)
.+.+.|..
T Consensus 205 r~~k~l~~ 212 (345)
T 4bbr_M 205 KTLNIMKN 212 (345)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=94.88 E-value=0.17 Score=46.08 Aligned_cols=83 Identities=13% Similarity=0.235 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccC-cCHHHHHHHHHHHHHHHcCCCccchhhhhh--------hccc
Q 016851 295 YDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQ-FKPNHIAAGAAYLAAKFLNWDLAAYQNIWH--------EFQT 365 (381)
Q Consensus 295 ~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~-y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~--------~~~~ 365 (381)
.++|..+...++++++ +..+|..++...+....... +++..||+|||++|+++.+.+.+- .+.-. .+.+
T Consensus 32 ~~~i~~v~~~l~L~~~-t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l-~d~~~~~~~~~~~~~~~ 109 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQR-VLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHI-RTICNEANDLWSLKVKL 109 (235)
T ss_dssp HHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCH-HHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccH-HHHHHHHHHHccchhhc
Confidence 4678888889999986 77788888888776666677 999999999999999998875431 22222 2356
Q ss_pred CHHHHHHHHHHHHh
Q 016851 366 TPAILQDVAQQLME 379 (381)
Q Consensus 366 ~~~~I~e~~~~Ll~ 379 (381)
+.++|..+-..|++
T Consensus 110 ~~~~I~~~E~~iL~ 123 (235)
T 1zp2_A 110 SRSNISEIEFEIIS 123 (235)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 78888887777764
No 24
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=94.42 E-value=0.22 Score=46.41 Aligned_cols=83 Identities=11% Similarity=0.132 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcc--cCHHHHHHH
Q 016851 296 DPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQ--TTPAILQDV 373 (381)
Q Consensus 296 ~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~--~~~~~I~e~ 373 (381)
+|+......++++.+ ...+|..+++..+.....-...+..+|+||+++|++..+...|.-.+.....+ ++.++|..+
T Consensus 43 ~wl~~v~~~~~l~~~-tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~m 121 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQE-TMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQM 121 (269)
T ss_dssp HHHHHHHHHTTCCHH-HHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCHH-HHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHH
Confidence 467777788888876 67788888888776655667789999999999999998875554444444443 788998888
Q ss_pred HHHHHh
Q 016851 374 AQQLME 379 (381)
Q Consensus 374 ~~~Ll~ 379 (381)
-..|++
T Consensus 122 E~~IL~ 127 (269)
T 2b9r_A 122 EMKILR 127 (269)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887775
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=94.08 E-value=0.31 Score=45.77 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=61.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhh--------------
Q 016851 295 YDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIW-------------- 360 (381)
Q Consensus 295 ~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~-------------- 360 (381)
.++|......++++++ +..+|..++...+.....-.+++..||+||+++|++..+...+.-.+.-
T Consensus 47 ~~~I~~v~~~l~L~~~-t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~ 125 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQQ-VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYA 125 (285)
T ss_dssp HHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccccc
Confidence 4567778888999986 7778888888877777777899999999999999999988764311111
Q ss_pred --hhcccCHHHHHHHHHHHHh
Q 016851 361 --HEFQTTPAILQDVAQQLME 379 (381)
Q Consensus 361 --~~~~~~~~~I~e~~~~Ll~ 379 (381)
..+..+.++|..+-..|++
T Consensus 126 ~~~~~~~~~~~Il~~E~~iL~ 146 (285)
T 3rgf_B 126 FPKEFPYRMNHILECEFYLLE 146 (285)
T ss_dssp CCSCCCCCHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHH
Confidence 1123566777777666654
No 26
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=93.98 E-value=2 Score=38.41 Aligned_cols=62 Identities=24% Similarity=0.398 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcc---CCcCccchhhhhHHHHHHhhhccCCCCChHHHH
Q 016851 182 FIQNLGLRLELPQTTIGTAMVLCHRFFVR---RSHACHDRFIIATAALFLAAKSEETPRPLNDVL 243 (381)
Q Consensus 182 ~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~---~si~~~~~~lva~acLfLA~K~EE~p~~l~dii 243 (381)
-|..+.++-++|..++..|+.+-..|.-. ....-...+.|++|||.||+--...|.++.++.
T Consensus 18 clr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r 82 (260)
T 3h4c_A 18 CMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVR 82 (260)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 34588899999999999999999999754 344456678999999999998877899988754
No 27
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=93.87 E-value=0.01 Score=57.68 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHHHHhhhccCCCCChHHHHHHH
Q 016851 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (381)
Q Consensus 180 v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acLfLA~K~EE~p~~l~dii~~~ 246 (381)
.++|.+++..|+|+.++.-+|..++.+.....-.....+..||+||||+||++...+++.+++..++
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~ 302 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTL 302 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4778899999999999999999999998776666778899999999999999987666666665543
No 28
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=93.70 E-value=0.23 Score=45.92 Aligned_cols=83 Identities=19% Similarity=0.134 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcc--cCHHHHHHH
Q 016851 296 DPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQ--TTPAILQDV 373 (381)
Q Consensus 296 ~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~--~~~~~I~e~ 373 (381)
+|+......++++.+ ...+|..+++..+.....-......+|+||+++|++..+...|.-.+.....+ ++.++|..+
T Consensus 44 dwl~~v~~~~~l~~~-tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~m 122 (260)
T 2cch_B 44 DWLVEVGEEYKLQNE-TLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122 (260)
T ss_dssp HHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCHH-HHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHH
Confidence 566677777888876 56678888877665444445667799999999999999885554444443333 788888888
Q ss_pred HHHHHh
Q 016851 374 AQQLME 379 (381)
Q Consensus 374 ~~~Ll~ 379 (381)
-..|++
T Consensus 123 E~~iL~ 128 (260)
T 2cch_B 123 EHLVLK 128 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 29
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=93.61 E-value=0.34 Score=44.63 Aligned_cols=84 Identities=11% Similarity=0.075 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcc--cCHHHHHH
Q 016851 295 YDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQ--TTPAILQD 372 (381)
Q Consensus 295 ~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~--~~~~~I~e 372 (381)
.+|+......+++..+ ...+|..+++..+.....-......+|++|+++|++..+...|.-.+.-...+ ++.++|..
T Consensus 56 vdwl~~v~~~~~l~~e-tl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~ 134 (254)
T 2f2c_A 56 LTWMHLLCESFELDKS-VFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELIN 134 (254)
T ss_dssp HHHHHHHHHHTTCCTT-HHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHH
T ss_pred HHHHHHHHHHHCCCch-HHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHH
Confidence 3566677777888875 67788889888776655667889999999999999998765444333333322 78899988
Q ss_pred HHHHHHh
Q 016851 373 VAQQLME 379 (381)
Q Consensus 373 ~~~~Ll~ 379 (381)
+-..|++
T Consensus 135 mE~~IL~ 141 (254)
T 2f2c_A 135 QEKDILE 141 (254)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887775
No 30
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=93.60 E-value=0.28 Score=45.28 Aligned_cols=84 Identities=18% Similarity=0.125 Sum_probs=61.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcc--cCHHHHHH
Q 016851 295 YDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQ--TTPAILQD 372 (381)
Q Consensus 295 ~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~--~~~~~I~e 372 (381)
.+|+......+++..+ ...+|..+++..+.....-......+|++|+++|++..+...|.-.+.-...+ ++.++|..
T Consensus 55 vdwl~ev~~~~~l~~e-tl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~ 133 (257)
T 1g3n_C 55 GTWMFSVCQEYNLEPN-VVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELID 133 (257)
T ss_dssp HHHHHHHHHHTTCCHH-HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHH
T ss_pred HHHHHHHHHHhCCCcc-HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHH
Confidence 3567777778888876 67788888888776555556677899999999999998875554334333332 78889988
Q ss_pred HHHHHHh
Q 016851 373 VAQQLME 379 (381)
Q Consensus 373 ~~~~Ll~ 379 (381)
+-..|++
T Consensus 134 mE~~iL~ 140 (257)
T 1g3n_C 134 QEKELLE 140 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877765
No 31
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=93.04 E-value=0.34 Score=46.05 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcc--cCHHHHHHH
Q 016851 296 DPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQ--TTPAILQDV 373 (381)
Q Consensus 296 ~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~--~~~~~I~e~ 373 (381)
+||......++++.+ ...+|..+++..+.....-......+|++|+++|+++.....+.-.+.-...+ ++.++|.++
T Consensus 76 dwl~ev~~~~~l~~~-t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~m 154 (306)
T 3g33_B 76 YWMLEVCEEQRCEEE-VFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDW 154 (306)
T ss_dssp HHHHHHHHHTTCCTT-HHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHHhCCcHh-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHH
Confidence 466666777888876 66688888888776656667889999999999999997765444333333333 788999888
Q ss_pred HHHHHh
Q 016851 374 AQQLME 379 (381)
Q Consensus 374 ~~~Ll~ 379 (381)
-..|++
T Consensus 155 E~~IL~ 160 (306)
T 3g33_B 155 EVLVLG 160 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887775
No 32
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=92.96 E-value=0.45 Score=44.64 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-ccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcc--cCHHHHHH
Q 016851 296 DPLTSILNKLGLSQTVLVNLALNLVSEGLRS-SLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQ--TTPAILQD 372 (381)
Q Consensus 296 ~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t-~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~--~~~~~I~e 372 (381)
+|+......+++..+ ...+|..+++..+.. ...-......+|+||+++|++..+...|.-.+.-...+ ++.++|..
T Consensus 55 ~wl~~v~~~~~l~~~-tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~ 133 (283)
T 1w98_B 55 DWLMEVCEVYKLHRE-TFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILT 133 (283)
T ss_dssp HHHHHHHHHTTCBHH-HHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHH
T ss_pred HHHHHHHHHhCCCcc-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHH
Confidence 456666777888775 667888888876654 33456788899999999999999875554444444333 78899988
Q ss_pred HHHHHHh
Q 016851 373 VAQQLME 379 (381)
Q Consensus 373 ~~~~Ll~ 379 (381)
+-..|++
T Consensus 134 mE~~IL~ 140 (283)
T 1w98_B 134 MELMIMK 140 (283)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887775
No 33
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=92.81 E-value=0.79 Score=43.86 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=48.5
Q ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCc
Q 016851 296 DPLTSILNKLG--LSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDL 353 (381)
Q Consensus 296 ~~L~~~l~~l~--~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l 353 (381)
.+|..+...++ +++. +..+|..++...+.......+.|..||+|||++|+++.+.+.
T Consensus 62 ~~I~ev~~~l~~~Lp~~-t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~ 120 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRS-VVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV 120 (323)
T ss_dssp HHHHHHHHHCTTTCCHH-HHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCC
Confidence 45677778888 8886 777899999988877777889999999999999999998864
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=92.56 E-value=0.6 Score=43.31 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhc--ccCHHHHHHH
Q 016851 296 DPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEF--QTTPAILQDV 373 (381)
Q Consensus 296 ~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~--~~~~~~I~e~ 373 (381)
+|+......++++.+ ...+|..+++..+.....-......+|+||+++|+++.+...+.-.+.-... .++.++|..+
T Consensus 62 ~wl~~v~~~~~l~~~-tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~m 140 (271)
T 2w96_A 62 TWMLEVCEEQKCEEE-VFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQM 140 (271)
T ss_dssp HHHHHHHHHTTCCTT-HHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHHHCCchh-HHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHH
Confidence 456666667788765 5678888888877665556778999999999999999887333322332222 2788888888
Q ss_pred HHHHHh
Q 016851 374 AQQLME 379 (381)
Q Consensus 374 ~~~Ll~ 379 (381)
-..|++
T Consensus 141 E~~IL~ 146 (271)
T 2w96_A 141 ELLLVN 146 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 35
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=91.95 E-value=1 Score=41.19 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCC
Q 016851 294 PYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWD 352 (381)
Q Consensus 294 P~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~ 352 (381)
-.++|......++++++ ...+|..+++..+.....-.+++..+|+||+++|++..+.+
T Consensus 34 ~~~~i~~v~~~l~l~~~-t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p 91 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQL-TINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQA 91 (257)
T ss_dssp HHHHHHHHHHHTTCCHH-HHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCC
Confidence 44678888889999986 77789989988877777778999999999999999998874
No 36
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=90.96 E-value=0.86 Score=42.08 Aligned_cols=84 Identities=17% Similarity=0.031 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhh--cccCHHHHHH
Q 016851 295 YDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHE--FQTTPAILQD 372 (381)
Q Consensus 295 ~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~--~~~~~~~I~e 372 (381)
.+|+......+++..+ ...+|..+++..+.....-......+|++|+++|+++.....|.-.+.-.. ..++.++|.+
T Consensus 53 vdWl~ev~~~~~l~~e-T~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~ 131 (252)
T 1f5q_B 53 TTWMFCVCKDLRQDNN-VFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLT 131 (252)
T ss_dssp HHHHHHHHHHTTCCTT-HHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHcCCChH-HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHH
Confidence 3456666777888775 667888888876655444556788999999999999988755443332222 2378899988
Q ss_pred HHHHHHh
Q 016851 373 VAQQLME 379 (381)
Q Consensus 373 ~~~~Ll~ 379 (381)
+-..|++
T Consensus 132 mE~~IL~ 138 (252)
T 1f5q_B 132 LEVKSLD 138 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888775
No 37
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=90.80 E-value=0.74 Score=42.17 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=48.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCC
Q 016851 295 YDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWD 352 (381)
Q Consensus 295 ~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~ 352 (381)
.+++......++++++ ...+|..+++..+.....-.+++..||+||+++|++..+.+
T Consensus 45 ~~~i~~v~~~l~l~~~-t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~ 101 (258)
T 2i53_A 45 ARFIFDVGTRLGLHYD-TLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETP 101 (258)
T ss_dssp HHHHHHHHHHTTCCHH-HHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCChH-HHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccccc
Confidence 4678888899999986 77789889888777666778999999999999999998864
No 38
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=89.30 E-value=0.74 Score=44.79 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCC
Q 016851 294 PYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWD 352 (381)
Q Consensus 294 P~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~ 352 (381)
-.+||..+...++++++ +..+|..+++..+.....-.+++..||+|||++|+++.+.+
T Consensus 41 ~v~wI~ev~~~l~L~~~-t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p 98 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQL-TINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQP 98 (358)
T ss_dssp HHHHHHHHHTTTTCCHH-HHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCC
Confidence 45677777788899886 77789989988877777778999999999999999998874
No 39
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=78.64 E-value=8.6 Score=30.09 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----cCccchhhhhHHHHHHhhhccCCCCCh
Q 016851 183 IQNLGLRLELPQTTIGTAMVLCHRFFVRRS-----HACHDRFIIATAALFLAAKSEETPRPL 239 (381)
Q Consensus 183 I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~s-----i~~~~~~lva~acLfLA~K~EE~p~~l 239 (381)
|.++|..|++.+ +.-.|-.++++|=..-+ -.+...-...++|+|.|||.--....=
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK 66 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDK 66 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCH
Confidence 468999999987 77788899999964321 113445567899999999998764443
No 40
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=74.86 E-value=6.6 Score=37.23 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=46.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCC---cCccchhhhhHHHHHHhhhc-cCCCCChHHHHHHHH
Q 016851 184 QNLGLRLELPQTTIGTAMVLCHRFFVRRS---HACHDRFIIATAALFLAAKS-EETPRPLNDVLRASS 247 (381)
Q Consensus 184 ~~v~~~L~L~~~t~~~Ai~~fdRF~~~~s---i~~~~~~lva~acLfLA~K~-EE~p~~l~dii~~~~ 247 (381)
.++|+.|+|...|...|...|++.-..-. -...+.+....+|||+||+. ++...+|.++++.+.
T Consensus 7 ~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 7 TALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 47899999999999999999999766411 12233455667779999984 446888999988763
No 41
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=71.75 E-value=23 Score=27.63 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=49.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcc-----ccccCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcccCHHHHHHHH
Q 016851 300 SILNKLGLSQTVLVNLALNLVSEGLRS-----SLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVA 374 (381)
Q Consensus 300 ~~l~~l~~~~~~i~~lA~~ll~dsl~t-----~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~~~~~~I~e~~ 374 (381)
.++-.+|..+ +...|..+++.--.. ...+.++-..-++||+|.|++.+.+..+. ..-.+..++.+.+...++
T Consensus 8 dLcVqfgc~e--~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK-~KL~~~s~lk~~~f~~l~ 84 (95)
T 3m03_A 8 DLAVQFSCIE--AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDK-NKMVATSGVKKAIFDRLC 84 (95)
T ss_dssp HHHHHHTCGG--GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCH-HHHHHTTCBCHHHHHHHH
T ss_pred HHHHHhCCHH--HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCH-HHHHHHHCCCHHHHHHHH
Confidence 3444455443 455566666542211 23456766677889999999999887664 244556668888888888
Q ss_pred HHHHh
Q 016851 375 QQLME 379 (381)
Q Consensus 375 ~~Ll~ 379 (381)
.++-.
T Consensus 85 ~~~e~ 89 (95)
T 3m03_A 85 KQLEK 89 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 42
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=69.99 E-value=31 Score=32.38 Aligned_cols=87 Identities=8% Similarity=-0.023 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cc-cc-cCcCHHHHHHHHHHHHHHHcCCCccchhhhhhhcccCHHH
Q 016851 293 HPYDPLTSILNKLGLSQTVLVNLALNLVSEGLR-SS-LW-LQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAI 369 (381)
Q Consensus 293 tP~~~L~~~l~~l~~~~~~i~~lA~~ll~dsl~-t~-~~-L~y~Ps~IAaAaI~lA~~~~~~~l~~~~~w~~~~~~~~~~ 369 (381)
.-..||.++.+...++.. +.-.|...++.... .+ .. -....+-|-++|+.+|.++++-.....+.|...-|++.+|
T Consensus 76 SI~~Yl~RI~k~t~ls~~-~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~E 154 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHC-VLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHE 154 (293)
T ss_dssp CHHHHHHHHHHTTTCCHH-HHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHH
T ss_pred cHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHH
Confidence 457788888887788765 44344444443322 12 11 2467888999999999999987665556788888899999
Q ss_pred HHHHHHHHHhh
Q 016851 370 LQDVAQQLMEL 380 (381)
Q Consensus 370 I~e~~~~Ll~L 380 (381)
|..+-.++|.+
T Consensus 155 LN~LE~eFL~l 165 (293)
T 2pmi_B 155 LNILENDFLKR 165 (293)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99998888865
No 43
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=48.49 E-value=97 Score=29.72 Aligned_cols=84 Identities=18% Similarity=0.170 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHcCcccccCC--------h----HH----H-----------HHHHHHHcCCCHHHHHHHHHHHHHH
Q 016851 270 YRERVIEAEQMILTTLNFELNVQH--------P----YD----P-----------LTSILNKLGLSQTVLVNLALNLVSE 322 (381)
Q Consensus 270 ~~~~Il~~E~~IL~~L~FdL~v~t--------P----~~----~-----------L~~~l~~l~~~~~~i~~lA~~ll~d 322 (381)
..+.+-.+|..||+.|-|.-+.+. + .. | |..+++.++.+...+...+|.+.+.
T Consensus 167 lvkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~ 246 (347)
T 2r7g_A 167 MIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQH 246 (347)
T ss_dssp HHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 467788899999999999976531 1 01 1 3333444554443466678888888
Q ss_pred Hhc--cccccCcCHHHHHHHHHHHHHHHcCCCc
Q 016851 323 GLR--SSLWLQFKPNHIAAGAAYLAAKFLNWDL 353 (381)
Q Consensus 323 sl~--t~~~L~y~Ps~IAaAaI~lA~~~~~~~l 353 (381)
++. +.++....-.+|-++|||..+++.+.++
T Consensus 247 ~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~ 279 (347)
T 2r7g_A 247 TLQNEYELMRDRHLDQIMMCSMYGICKVKNIDL 279 (347)
T ss_dssp HHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCC
Confidence 774 4667777888999999999999988653
No 44
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=47.96 E-value=58 Score=31.28 Aligned_cols=68 Identities=10% Similarity=-0.028 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhcc--CCcCccchhhhhHHHHHHhhhccCCCCChHHHHHHH
Q 016851 179 YCAFIQNLGLRLELPQ-TTIGTAMVLCHRFFVR--RSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (381)
Q Consensus 179 ~v~~I~~v~~~L~L~~-~t~~~Ai~~fdRF~~~--~si~~~~~~lva~acLfLA~K~EE~p~~l~dii~~~ 246 (381)
+..-|.++|++|+++. +.....-..|+..+.. .-+.+.++.-+.+.|+|.-||+.....+.++|+...
T Consensus 218 a~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Y 288 (347)
T 2r7g_A 218 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 288 (347)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3445889999998775 4444555566666543 345677888899999999999998888899998864
No 45
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=47.52 E-value=61 Score=31.88 Aligned_cols=69 Identities=10% Similarity=-0.038 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhcc--CCcCccchhhhhHHHHHHhhhccCCCCChHHHHHHH
Q 016851 178 SYCAFIQNLGLRLELPQ-TTIGTAMVLCHRFFVR--RSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (381)
Q Consensus 178 ~~v~~I~~v~~~L~L~~-~t~~~Ai~~fdRF~~~--~si~~~~~~lva~acLfLA~K~EE~p~~l~dii~~~ 246 (381)
-+..-|..+|.+|+++. +....--+.|+..+.. .-+.+.++.-+.+.|+|.-||+.....+.++|+...
T Consensus 281 LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Y 352 (411)
T 4ell_A 281 LAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 352 (411)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 34556889999998875 3333333344444432 445677888899999999999998888999998864
No 46
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=42.77 E-value=48 Score=34.65 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=43.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcc-----CCcCccchhhhhHHHHH-HhhhccCCCCChHHHHHHHH
Q 016851 184 QNLGLRLELPQTTIGTAMVLCHRFFVR-----RSHACHDRFIIATAALF-LAAKSEETPRPLNDVLRASS 247 (381)
Q Consensus 184 ~~v~~~L~L~~~t~~~Ai~~fdRF~~~-----~si~~~~~~lva~acLf-LA~K~EE~p~~l~dii~~~~ 247 (381)
.++|+.|++...|..-|...|...... .++.+. .+.-.||+| .||.+|+....+..+++.+.
T Consensus 9 ~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~--~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~ 76 (656)
T 4elj_A 9 TALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKK--KELWGICIFIAAVDLDEMSFTFTELQKNIE 76 (656)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CC--HHHHHHHHHHHHHHTTCCCSCHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccc--hHHhhhhhheeeeeccCCeeeHHHHHHHhc
Confidence 478999999999999999999998842 222332 233444444 45557888999999988773
No 47
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=36.25 E-value=1.2e+02 Score=31.77 Aligned_cols=70 Identities=10% Similarity=-0.036 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhcc--CCcCccchhhhhHHHHHHhhhccCCCCChHHHHHHHH
Q 016851 178 SYCAFIQNLGLRLELPQ-TTIGTAMVLCHRFFVR--RSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (381)
Q Consensus 178 ~~v~~I~~v~~~L~L~~-~t~~~Ai~~fdRF~~~--~si~~~~~~lva~acLfLA~K~EE~p~~l~dii~~~~ 247 (381)
-+..-|..+|.+|+++. +.....-.+|+..+.. .-+.+.++.-+.+.|+|.-||+.....+.++|+....
T Consensus 526 LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr 598 (656)
T 4elj_A 526 LAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 598 (656)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 34567889999998774 3444555566666543 3456778888999999999999988899999998654
No 48
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=21.64 E-value=65 Score=19.04 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHcCcc
Q 016851 271 RERVIEAEQMILTTLNFE 288 (381)
Q Consensus 271 ~~~Il~~E~~IL~~L~Fd 288 (381)
.++|.++|.-|-++|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 467888999999999987
No 49
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=20.98 E-value=1.6e+02 Score=28.87 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=39.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhc--cccccCcCHHHHHHHHHHHHHHHcCCCc
Q 016851 300 SILNKLGLSQTVLVNLALNLVSEGLR--SSLWLQFKPNHIAAGAAYLAAKFLNWDL 353 (381)
Q Consensus 300 ~~l~~l~~~~~~i~~lA~~ll~dsl~--t~~~L~y~Ps~IAaAaI~lA~~~~~~~l 353 (381)
.++..++++..++....|.+.+.++. +.++....=.+|-++|||..+++.+.++
T Consensus 288 ~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~ 343 (411)
T 4ell_A 288 TLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDL 343 (411)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCC
Confidence 33445665543466778888888774 4666667788999999999999987654
Done!