BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016852
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PJQ|A Chain A, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJQ|B Chain B, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJS|A Chain A, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
pdb|1PJS|B Chain B, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
Length = 457
Score = 227 bits (578), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 120/237 (50%), Positives = 160/237 (67%), Gaps = 5/237 (2%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G V LVG GPGD LLTLK ++ IQ+AD+++YDRLVS+D+++LV +A ++VGK AGYH
Sbjct: 216 GEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYH 275
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
QEEI+++LL A+ G VVRLKGGDP +FGRGGEE++ L GI V+PGITAASG
Sbjct: 276 CVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASG 335
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
+A GIPLTHR A SVR +TGH + GG EN A TLV YMGL+ ++
Sbjct: 336 CSAYSGIPLTHRDYAQSVRLVTGHLKTGGE---LDWENLAAEKQTLVFYMGLNQAATIQE 392
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
KL+ G+ P A +E GT+ +QR+V L L + +++ SP LII+G+VV+L
Sbjct: 393 KLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGEL--AQQVESPALIIVGRVVAL 447
>pdb|1PJT|A Chain A, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
pdb|1PJT|B Chain B, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
Length = 457
Score = 227 bits (578), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 120/237 (50%), Positives = 160/237 (67%), Gaps = 5/237 (2%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G V LVG GPGD LLTLK ++ IQ+AD+++YDRLVS+D+++LV +A ++VGK AGYH
Sbjct: 216 GEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYH 275
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
QEEI+++LL A+ G VVRLKGGDP +FGRGGEE++ L GI V+PGITAASG
Sbjct: 276 CVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASG 335
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
+A GIPLTHR A SVR +TGH + GG EN A TLV YMGL+ ++
Sbjct: 336 CSAYSGIPLTHRDYAQSVRLVTGHLKTGGE---LDWENLAAEKQTLVFYMGLNQAATIQE 392
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
KL+ G+ P A +E GT+ +QR+V L L + +++ SP LII+G+VV+L
Sbjct: 393 KLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGEL--AQQVESPALIIVGRVVAL 447
>pdb|2YBO|A Chain A, The X-Ray Structure Of The Sam-Dependent Uroporphyrinogen
Iii Methyltransferase Nire From Pseudomonas Aeruginosa
In Complex With Sah
Length = 294
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 156/237 (65%), Gaps = 1/237 (0%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G+V LVG GPGDP LLTL+A ++Q+A++++YDRLV+ +++ L+ + + +YVGK G+H
Sbjct: 25 GSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHH 84
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
S QEEI+ELL+ A VVRLKGGDP +FGRG EE++ L + G+ +V+PG+TAASG
Sbjct: 85 SLPQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASG 144
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
+ GIPLTHR +A S F+TGH + G L A A TLV YMGL L +A
Sbjct: 145 CSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDLDWA-GLARGKQTLVFYMGLGNLAEIAA 203
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
+L+ HGL TPAA + +GT Q++ L +L +L PTLI++G+VV+L
Sbjct: 204 RLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVAL 260
>pdb|2YBQ|A Chain A, The X-Ray Structure Of The Sam-Dependent Uroporphyrinogen
Iii Methyltransferase Nire From Pseudomonas Aeruginosa
In Complex With Sah And Uroporphyrinogen Iii
Length = 292
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 156/237 (65%), Gaps = 1/237 (0%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G+V LVG GPGDP LLTL+A ++Q+A++++YDRLV+ +++ L+ + + +YVGK G+H
Sbjct: 23 GSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHH 82
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
S QEEI+ELL+ A VVRLKGGDP +FGRG EE++ L + G+ +V+PG+TAASG
Sbjct: 83 SLPQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASG 142
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
+ GIPLTHR +A S F+TGH + G L A A TLV YMGL L +A
Sbjct: 143 CSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDLDWA-GLARGKQTLVFYMGLGNLAEIAA 201
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
+L+ HGL TPAA + +GT Q++ L +L +L PTLI++G+VV+L
Sbjct: 202 RLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVAL 258
>pdb|1S4D|A Chain A, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|B Chain B, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|D Chain D, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|E Chain E, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|F Chain F, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|G Chain G, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|H Chain H, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|I Chain I, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|J Chain J, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|K Chain K, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|L Chain L, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|M Chain M, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
Length = 280
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 133/237 (56%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G+V+LVG GPGDP LLTL A +++AD++++D LV+ D L L P A L + GK G
Sbjct: 15 GSVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGGKP 74
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
S Q +I L+ A G V+RLKGGDP VFGRGGEE L + + +++PGITA G
Sbjct: 75 SPKQRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIG 134
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
A GIP+THR V ++V FLTGH G + A +V+YM + + ++
Sbjct: 135 GLAYAGIPVTHREVNHAVTFLTGHDSSGLVPDRINWQGIASGSPVIVMYMAMKHIGAITA 194
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
L+ G P P A + TPQQ ++ + L + L P ++++G+VV L
Sbjct: 195 NLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVRL 251
>pdb|1VE2|A Chain A, Crystal Structure Of Uroporphyrin-Iii-C-Methyltransferase
From Thermus Thermophilus
pdb|1VE2|B Chain B, Crystal Structure Of Uroporphyrin-Iii-C-Methyltransferase
From Thermus Thermophilus
Length = 235
Score = 157 bits (398), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 142/238 (59%), Gaps = 17/238 (7%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G VYLVG G G P+ LTLKA++V++ A+++L+DRLV VL L L+ VGK GY
Sbjct: 3 GKVYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVHPGVLALA--KGELVPVGKE-GYG 59
Query: 187 SRT-QEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAAS 245
+T QE I L++ A G V RLKGGDP+VFGRGGEE L++ GI +V+PG+T+A
Sbjct: 60 GKTPQEAITARLIALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAV 119
Query: 246 GIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLA 305
G + LG+PLTHRG+A S TGH DP A TLV+ M L TL L
Sbjct: 120 GALSALGLPLTHRGLARSFAVATGH------DPALPLPRA----DTLVLLMPLHTLGGLK 169
Query: 306 LKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
+L+ PP TP A + R P + + ++DL +G E L SP L+++GKVV L
Sbjct: 170 ERLLER-FPPETPLALLARVGWPGEAVRLGRVEDLPG-LG-EGLPSPALLVVGKVVGL 224
>pdb|1V9A|A Chain A, Crystal Structure Of Uroporphyrin-Iii C-Methyl Transferase
From Thermus Thermophilus Complexed With S-Adenyl
Homocysteine
pdb|1V9A|B Chain B, Crystal Structure Of Uroporphyrin-Iii C-Methyl Transferase
From Thermus Thermophilus Complexed With S-Adenyl
Homocysteine
pdb|1VA0|A Chain A, Crystal Structure Of The Native Form Of Uroporphyrin Iii
C-Methyl Transferase From Thermus Thermophilus
pdb|1VA0|B Chain B, Crystal Structure Of The Native Form Of Uroporphyrin Iii
C-Methyl Transferase From Thermus Thermophilus
Length = 239
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 151/244 (61%), Gaps = 27/244 (11%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G VYLVG GPGDP+LLTLKA +++++A ++LYDRLV VL L AP ++ YVGK
Sbjct: 1 GRVYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVDERVLAL-APGEKV-YVGKEE-GE 57
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
S QEEIH LLL A VVRLKGGDP+VFGRGGEE+ FL + G+ V+V+PG+T S
Sbjct: 58 SEKQEEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVT--SL 115
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPD-------STLVVYMGLS 299
+A+ G+PLTHRG+A+ ++G V E PD TLVV MG+
Sbjct: 116 LAS--GLPLTHRGLAHGFAAVSG-----------VLEGGGYPDLRPFARVPTLVVLMGVG 162
Query: 300 TLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGK 359
+A +L+ G P P +ER +TP++R V + L+++A+ G E+ P L I+G+
Sbjct: 163 RRVWIAKELLRLGRDPREPTLFVERASTPKERRVHARLEEVAE--GKVEVRPPALWILGE 220
Query: 360 VVSL 363
VV +
Sbjct: 221 VVRV 224
>pdb|1CBF|A Chain A, The X-ray Structure Of A Cobalamin Biosynthetic Enzyme,
Cobalt Precorrin-4 Methyltransferase, Cbif
Length = 285
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYH 186
+Y++G GPGDPDL+T+K +K++Q+AD++LY D LVS D++ P A +L KTAG H
Sbjct: 22 KLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVL---KTAGMH 78
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
EE+ +L G VVR+ GDP ++G E+M L+++G+ ++++PG+T+
Sbjct: 79 ---LEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFA 135
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAAD---PDSTLVVYMGLSTLPS 303
AA LT + +V +R G P+ E D T+ +++ +
Sbjct: 136 AAAAAEAELTIPDLTQTVIL----TRAEGRTPVPEFEKLTDLAKHKCTIALFLSSTLTKK 191
Query: 304 LALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
+ + ++ G TP + + T P ++IV + +KDL D + + +I+ G +
Sbjct: 192 VMKEFINAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMILAGWALDP 251
Query: 364 SPFW 367
+ W
Sbjct: 252 ATPW 255
>pdb|2CBF|A Chain A, The X-Ray Structure Of A Cobalamin Biosynthetic Enzyme,
Cobalt Precorrin-4 Methyltransferase, Cbif, From
Bacillus Megaterium, With The His-Tag Cleaved Off
Length = 234
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 14/235 (5%)
Query: 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYH 186
+Y++G GPGDPDL+T+K +K++Q+AD++LY D LVS D++ P A +L KTAG H
Sbjct: 5 KLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVL---KTAGMH 61
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
EE+ +L G VVR+ GDP ++G E+M L+++G+ ++++PG+T+
Sbjct: 62 ---LEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFA 118
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAAD---PDSTLVVYMGLSTLPS 303
AA LT + +V +R G P+ E D T+ +++ +
Sbjct: 119 AAAAAEAELTIPDLTQTVIL----TRAEGRTPVPEFEKLTDLAKHKCTIALFLSSTLTKK 174
Query: 304 LALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIG 358
+ + ++ G TP + + T P ++IV + +KDL D + + +I+ G
Sbjct: 175 VMKEFINAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMILAG 229
>pdb|4E16|A Chain A, Precorrin-4 C(11)-Methyltransferase From Clostridium
Difficile
Length = 253
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 122/238 (51%), Gaps = 20/238 (8%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYHS 187
V+ VG GPGD +L+TLK K++ AD+++Y LV+ ++L+ + ++ H+
Sbjct: 7 VHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQI---------HN 57
Query: 188 RTQ---EEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAA 244
+EI +++ E +VVRL+ GD ++G E+++ L + I PG+++
Sbjct: 58 SAHMDLQEIIDVMREGIENNKSVVRLQTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSF 117
Query: 245 SGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENA---ADPDSTLVVYMGLSTL 301
G A+ LG+ T ++ SV +R G P+ E+ A +++V+++ + +
Sbjct: 118 LGAASSLGVEYTVPEISQSVII----TRMEGRTPVPEKESIQSYAKHQTSMVIFLSVQEI 173
Query: 302 PSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGK 359
+ KL+ G P TP A I + T ++IV L D+A K+ + LI++G+
Sbjct: 174 EKVVSKLLEGGYPKDTPIAVIYKATWADEKIVKGTLSDIAVKVKENNINKTALIMVGR 231
>pdb|3NDC|A Chain A, Crystal Structure Of Precorrin-4 C11-Methyltransferase
From Rhodobacter Capsulatus
pdb|3NDC|B Chain B, Crystal Structure Of Precorrin-4 C11-Methyltransferase
From Rhodobacter Capsulatus
Length = 264
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 11/241 (4%)
Query: 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYH 186
V+ +G GPG DL+T++ +I + LY LV +L P A+++
Sbjct: 5 TVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPM---- 60
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
+ + I + + G V RL GD ++ GE++ L+ I V PG+ + +
Sbjct: 61 --SLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAA 118
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
AA LG LT GVA SV R EN A + L +++ + L +
Sbjct: 119 AAATLGAELTLPGVAQSVILTRTSGRASAMPAGETLENFARTGAVLAIHLSVHVLDEVVQ 178
Query: 307 KLM-HHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLSP 365
KL+ H+G P A + R + P QR+V + L L +G EL LI++G+ ++
Sbjct: 179 KLVPHYG--EDCPVAIVWRASWPDQRVVRATLATLQTSLGA-ELERTALILVGRSLATED 235
Query: 366 F 366
F
Sbjct: 236 F 236
>pdb|3NEI|A Chain A, Crystal Structure Of Precorrin-4 C11-Methyltransferase
From Rhodobacter Capsulatus (No Sah Bound)
pdb|3NEI|B Chain B, Crystal Structure Of Precorrin-4 C11-Methyltransferase
From Rhodobacter Capsulatus (No Sah Bound)
Length = 281
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 11/241 (4%)
Query: 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYH 186
V+ +G GPG DL+T++ +I + LY LV +L P A+++
Sbjct: 22 TVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPM---- 77
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
+ + I + + G V RL GD ++ GE++ L+ I V PG+ + +
Sbjct: 78 --SLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAA 135
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
AA LG LT GVA SV R EN A + L +++ + L +
Sbjct: 136 AAATLGAELTLPGVAQSVILTRTSGRASAMPAGETLENFARTGAVLAIHLSVHVLDEVVQ 195
Query: 307 KLM-HHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLSP 365
KL+ H+G P A + R + P QR+V + L L +G EL LI++G+ ++
Sbjct: 196 KLVPHYG--EDCPVAIVWRASWPDQRVVRATLATLQTSLGA-ELERTALILVGRSLATED 252
Query: 366 F 366
F
Sbjct: 253 F 253
>pdb|2ZVB|A Chain A, Crystal Structure Of Tt0207 From Thermus Thermophilus Hb8
pdb|2ZVC|A Chain A, Form 2 Structure (C2221) Of Tt0207 From Thermus
Thermophilus Hb8
Length = 295
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 29/153 (18%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLL-YDRLVSNDVLDLVAPNARLLYVGKTAGY 185
G ++LVG GPGD LT +A + ++ A++++ Y V +L+ + L GK
Sbjct: 2 GELFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTYVK--LLEEMG-----LLAGKEVVR 54
Query: 186 HSRTQE-EIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQ---------- 234
T+E + E L A G V + GGDP ++G ++ ++++G++
Sbjct: 55 KGMTEELDRAEEALERALSGQRVALVSGGDPGIYGMAAPVLELMEERGLKRVDGGVGLPG 114
Query: 235 ----------VKVIPGITAASGIAAELGIPLTH 257
+ VIPG+TAA+ +A+ LG PL H
Sbjct: 115 RFAGEEGEVFLAVIPGVTAANAVASLLGSPLAH 147
>pdb|2NPN|A Chain A, Crystal Structure Of Putative Cobalamin Synthesis Related
Protein (Cobf) From Corynebacterium Diphtheriae
Length = 251
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 37/165 (22%)
Query: 128 NVYLVGTGPGDPDLLTLKAM-------------KVIQKADLLLYDRLVSNDVLDLVAPNA 174
+Y++G G G P+ LTL+A+ K QK+DLL + ++D AP
Sbjct: 4 TIYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLL----ALRQKIVDTHAPGT 59
Query: 175 RLLYVGKTAGYHSRT----QEEIHELLLSFAEVGATVVR-----------LKGGDPLVFG 219
+ V T R +EE+ A + A+ +R L GDP ++
Sbjct: 60 PIYAV--TDPERDRNPDNYEEEVRRWHAERAHLLASTIRERTPDDGAVAFLVWGDPSLYD 117
Query: 220 ---RGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVA 261
R E L+ VKVIPGITA + AE GI + G A
Sbjct: 118 STLRIIEHXRNLEDLHADVKVIPGITAVQVLTAEHGILINRIGEA 162
>pdb|2E0K|A Chain A, Crystal Structure Of Cbil, A Methyltransferase Involved In
Anaerobic Vitamin B12 Biosynthesis
pdb|2E0K|B Chain B, Crystal Structure Of Cbil, A Methyltransferase Involved In
Anaerobic Vitamin B12 Biosynthesis
pdb|2E0N|A Chain A, Crystal Structure Of Cbil In Complex With
S-Adenosylhomocysteine, A Methyltransferase Involved In
Anaerobic Vitamin B12 Biosynthesis
pdb|2E0N|B Chain B, Crystal Structure Of Cbil In Complex With
S-Adenosylhomocysteine, A Methyltransferase Involved In
Anaerobic Vitamin B12 Biosynthesis
Length = 259
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSN---------DVL---DLVAPNA 174
G++ V GPGDP L+T+KA+ +++AD++ Y VS D+L DL
Sbjct: 5 GSIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDILKEFDLDPSKL 64
Query: 175 R--LLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKG 232
R L+ + ++ G + + + + G V + GD + ++ ++ G
Sbjct: 65 RGMLVPMSRSRGAAEASYAANYASMAEEVQAGRRVAVVSVGDGGFYSTASAIIERARRDG 124
Query: 233 IQVKVIPGITAASGIAAELGIPL 255
+ + PGI A + G+PL
Sbjct: 125 LDCSMTPGIPAFIAAGSAAGMPL 147
>pdb|2QBU|A Chain A, Crystal Structure Of Methanothermobacter
Thermautotrophicus Cbil
pdb|2QBU|B Chain B, Crystal Structure Of Methanothermobacter
Thermautotrophicus Cbil
Length = 232
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 28/152 (18%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVS----------NDVLDLVAPNARL 176
G + VG GPGD +LLTL+A+ V++ ++ R S D+L R+
Sbjct: 3 GKLIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRI 62
Query: 177 L--YVGKTAGYHSRTQEEIH-----ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQ 229
L T R + E H ++ + E G V + GDP ++ +LQ
Sbjct: 63 LDPVFPMT---DDRDELESHWDSAARMVAAELEDGRDVAFITLGDPSIYS----TFSYLQ 115
Query: 230 QK----GIQVKVIPGITAASGIAAELGIPLTH 257
Q+ G + +++PG+T+ + AA G L
Sbjct: 116 QRIEDMGFKTEMVPGVTSFTACAATAGRTLVE 147
>pdb|3NUT|A Chain A, Crystal Structure Of The Methyltransferase Cobj
pdb|3NUT|B Chain B, Crystal Structure Of The Methyltransferase Cobj
pdb|3NUT|C Chain C, Crystal Structure Of The Methyltransferase Cobj
pdb|3NUT|D Chain D, Crystal Structure Of The Methyltransferase Cobj
Length = 251
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKA-DLLLYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
G V + G GPG DL+T + + +A D++ Y V+ +AP L
Sbjct: 9 GWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVAR-----IAPREGL----TLHPT 59
Query: 186 HSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQ----QKGIQVKVIPGI 241
+R + + L A G VV + GDP VF + L+ G +++++PGI
Sbjct: 60 DNRVELDRATHALEMAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPGI 119
Query: 242 TAASGIAAELGIPLTH 257
TA AA G PL H
Sbjct: 120 TAMLAAAAAAGAPLGH 135
>pdb|3I4T|A Chain A, Crystal Structure Of Putative Diphthine Synthase From
Entamoeba Histolytica
Length = 292
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 15/164 (9%)
Query: 121 AEKCGPGNV-YLVGTGPGDPDLLTLKAMKVIQKADLLL---YDRLVSNDVLDLVAPNARL 176
A+ GPG++ Y++G G D +T++ ++ ++ DL+ Y ++ DV L +
Sbjct: 14 AQTQGPGSMLYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAILQCDVAKLEEFYGKK 73
Query: 177 LYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFL--QQKGIQ 234
+ +G + + +L A+ V L GD V+G F+ Q+ GI+
Sbjct: 74 VIIGDRDLVETEADQ-----ILEPAKT-KNVALLVVGD--VYGATTHSDIFVRCQKMGIE 125
Query: 235 VKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDP 278
VKVI + + I G+ L G SV F + H R P
Sbjct: 126 VKVIHNASIMNAIGCS-GLQLYRFGQTVSVCFWSEHWRPSSYYP 168
>pdb|3ND1|A Chain A, Crystal Structure Of Precorrin-6a Synthase From
Rhodobacter Capsulatus
pdb|3ND1|B Chain B, Crystal Structure Of Precorrin-6a Synthase From
Rhodobacter Capsulatus
Length = 275
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 31/177 (17%)
Query: 131 LVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVA------------PNARLL- 177
L+G G G+P +T +A+ + ADL+L L D DL P +++
Sbjct: 26 LIGIGTGNPRHITGQAVDAMNAADLILIP-LKGADKSDLAGLRRQICAAHLTNPATKVID 84
Query: 178 ------------YVGKTAGYHSRTQEE-IHELLLSFAEVGATVVRLKGGDPLVFGRGGEE 224
Y +H E + E+ + V L GDP ++
Sbjct: 85 FALPVRDASNPSYRKGVDDWHDAIAETWLSEITAHVPGLEGRVALLVWGDPSLYDSTLRI 144
Query: 225 MDFLQQK-GIQVKVIPGITAASGIAAELGIPLTHRG---VANSVRFLTGHSRKGGTD 277
+ L+ + + KVIPGITA + A IPL G V + R L H GT+
Sbjct: 145 AERLKSRLPLTTKVIPGITAIQALCAAHAIPLNDIGAPVVITTGRQLRDHGWPAGTE 201
>pdb|2IXS|A Chain A, Structure Of Sdai Restriction Endonuclease
pdb|2IXS|B Chain B, Structure Of Sdai Restriction Endonuclease
Length = 323
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 170 VAPNARLLYVGKTAGYHSRTQEEIHE 195
AP A++LY+G T G H+R ++ I E
Sbjct: 193 FAPGAKVLYIGDTRGKHTRFEKRIFE 218
>pdb|2HUV|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2HUV|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E +++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRMKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EL0|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L21m)
pdb|2EL0|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L21m)
Length = 265
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K M++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGMEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2PB4|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2PB4|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G++ +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGMSATVAYPEGN 142
>pdb|2GK4|A Chain A, The Crystal Structure Of The Dna/pantothenate Metabolism
Flavoprotein From Streptococcus Pneumoniae
pdb|2GK4|B Chain B, The Crystal Structure Of The Dna/pantothenate Metabolism
Flavoprotein From Streptococcus Pneumoniae
Length = 232
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 159 DRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLL 198
D +++ND+ + A R ++V K +T+EEI ELLL
Sbjct: 185 DLIIANDLTQISADQHRAIFVEKNQLQTVQTKEEIAELLL 224
>pdb|2EEQ|A Chain A, Mutant Y29m Structure Of Ph0725 From Pyrococcus Horikoshii
Ot3
pdb|2EEQ|B Chain B, Mutant Y29m Structure Of Ph0725 From Pyrococcus Horikoshii
Ot3
Length = 265
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D++ Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDMVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|3U02|A Chain A, Crystal Structure Of The Trna Modifier Tias From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr225
pdb|3U02|B Chain B, Crystal Structure Of The Trna Modifier Tias From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr225
pdb|3U02|C Chain C, Crystal Structure Of The Trna Modifier Tias From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr225
pdb|3U02|D Chain D, Crystal Structure Of The Trna Modifier Tias From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr225
Length = 252
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 99 QLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMK 148
++ E+K L V+R RE + E PG V+L+G P + + +L+A++
Sbjct: 68 KIKEVKTL--VIRYVRELADIDHENTNPGIVFLIGEVPKELEEFSLRALR 115
>pdb|2P9D|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2P9D|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 MSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EH2|A Chain A, Mutant V18m Structure Of Ph0725 From Pyrococcus Horikoshii
Ot3
pdb|2EH2|B Chain B, Mutant V18m Structure Of Ph0725 From Pyrococcus Horikoshii
Ot3
Length = 265
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITMKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EGB|A Chain A, Crystal Structure Of Glu140 To Asn Mutant Of Diphthine
Synthase
pdb|2EGB|B Chain B, Crystal Structure Of Glu140 To Asn Mutant Of Diphthine
Synthase
Length = 265
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPNGN 142
>pdb|2Z6R|A Chain A, Crystal Structure Of Lys49 To Arg Mutant Of Diphthine
Synthase
pdb|2Z6R|B Chain B, Crystal Structure Of Lys49 To Arg Mutant Of Diphthine
Synthase
Length = 265
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + RL +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRI---QRL--IGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2EK4|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L8m)
pdb|2EK4|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L8m)
Length = 265
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGMGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|3KWP|A Chain A, Crystal Structure Of Putative Methyltransferase From
Lactobacillus Brevis
Length = 296
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 16/234 (6%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G++YLV T G+ D T +A+K + DL + + D + K +H
Sbjct: 16 GHLYLVPTPIGNLDDXTFRAVKTLTAVDL-----IAAEDTRNTQKLLNHFEITTKQISFH 70
Query: 187 S-RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAAS 245
TQE I +L+ + G P + G E ++ I V +PG A +
Sbjct: 71 EHNTQERIPQLIAKLKQGXQIAQVSDAGXPSISDPGHELVNACIDAHIPVVPLPG--ANA 128
Query: 246 GIAAELGIPLTHRGVANSVRFLTGH-SRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSL 304
G+ A L G+A + G RK +A A P+ TL+ Y L
Sbjct: 129 GLTA-----LIASGLAPQPFYFYGFLDRKPKDRKAEIAGLAQRPE-TLIFYEAPHRLKK- 181
Query: 305 ALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIG 358
L+ + G PA T + + L +LA+ + + ++++G
Sbjct: 182 TLQNLAAGFGDERPAVLCRELTKRYEEFLRGSLAELANWAATDTVRGEFVVLVG 235
>pdb|2EHC|A Chain A, Crystal Structure Of Asn69 To Lys Mutant Of Diphthine
Synthase
pdb|2EHC|B Chain B, Crystal Structure Of Asn69 To Lys Mutant Of Diphthine
Synthase
Length = 265
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ +++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFEKIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2PB6|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2PB6|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2ED3|A Chain A, Mutant I127m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|2ED3|B Chain B, Mutant I127m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
Length = 265
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHMYKFGKSATVAYPEGN 142
>pdb|2P6K|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2P6K|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVMYPEGN 142
>pdb|2EK2|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (E140m)
pdb|2EK2|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (E140m)
Length = 265
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPMGN 142
>pdb|2P2X|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2P2X|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIMKFGKSATVAYPEGN 142
>pdb|2E07|A Chain A, Crystal Structure Of Asp79 To Glu Mutant Of Diphthine
Synthase
pdb|2E07|B Chain B, Crystal Structure Of Asp79 To Glu Mutant Of Diphthine
Synthase
Length = 265
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-EVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2PCM|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2PCM|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----MIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2DV4|A Chain A, Crystal Structure Of Leu65 To Gln Mutant Of Diphthine
Synthase
pdb|2DV4|B Chain B, Crystal Structure Of Leu65 To Gln Mutant Of Diphthine
Synthase
Length = 265
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSR--TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR ++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVEQNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EK3|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L3m)
pdb|2EK3|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L3m)
Length = 265
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 MYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2E4N|A Chain A, Mutant V251m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|2E4N|B Chain B, Mutant V251m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2PCG|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2PCG|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2ELD|A Chain A, Mutant L160m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|2ELD|B Chain B, Mutant L160m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EL3|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L242m)
pdb|2EL3|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L242m)
Length = 265
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EL2|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (l185m)
pdb|2EL2|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (l185m)
Length = 265
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EKA|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L202m)
pdb|2EKA|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L202m)
Length = 265
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EK7|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L163m)
pdb|2EK7|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L163m)
Length = 265
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EH5|A Chain A, Mutant L184m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|2EH5|B Chain B, Mutant L184m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EGS|A Chain A, Crystal Structure Of Leu261 To Met Mutant Of Diphthine
Synthase
pdb|2EGS|B Chain B, Crystal Structure Of Leu261 To Met Mutant Of Diphthine
Synthase
Length = 265
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2E8H|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2E8H|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2OWU|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2OWU|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLMIYKFGKSATVAYPEGN 142
>pdb|2OWG|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2OWG|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2E4R|A Chain A, Mutant I253m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|2E4R|B Chain B, Mutant I253m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2E08|A Chain A, Crystal Structure Of Glu140 To Lys Mutant Of Diphthine
Synthase
pdb|2E08|B Chain B, Crystal Structure Of Glu140 To Lys Mutant Of Diphthine
Synthase
Length = 265
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPKGN 142
>pdb|2DXW|A Chain A, Crystal Structure Of Glu54 To Lys Mutant Of Diphthine
Synthase
pdb|2DXW|B Chain B, Crystal Structure Of Glu54 To Lys Mutant Of Diphthine
Synthase
Length = 265
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKKIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2HUX|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2HUX|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2PCI|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2PCI|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2E16|A Chain A, Crystal Structure Of Glu140 To Arg Mutant Of Diphthine
Synthase
pdb|2E16|B Chain B, Crystal Structure Of Glu140 To Arg Mutant Of Diphthine
Synthase
Length = 265
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2HUQ|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2HUQ|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2OWK|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2OWK|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2DSI|A Chain A, Crystal Structure Of Glu171 To Arg Mutant Of Diphthine
Synthase
pdb|2DSI|B Chain B, Crystal Structure Of Glu171 To Arg Mutant Of Diphthine
Synthase
Length = 265
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|1WNG|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|1WNG|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|2DEK|A Chain A, Crystal Structure Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 At 1.65 A Resolution
pdb|2DEK|B Chain B, Crystal Structure Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 At 1.65 A Resolution
Length = 265
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EHL|A Chain A, Crystal Structure Of Thr146 To Arg Mutant Of Diphthine
Synthase
pdb|2EHL|B Chain B, Crystal Structure Of Thr146 To Arg Mutant Of Diphthine
Synthase
Length = 265
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2P5F|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2P5F|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2DXX|A Chain A, Crystal Structure Of Asn142 To Glu Mutant Of Diphthine
Synthase
pdb|2DXX|B Chain B, Crystal Structure Of Asn142 To Glu Mutant Of Diphthine
Synthase
Length = 265
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2EMR|A Chain A, Mutant L65m Structure Of Ph0725 From Pyrococcus Horikoshii
Ot3
pdb|2EMR|B Chain B, Mutant L65m Structure Of Ph0725 From Pyrococcus Horikoshii
Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVEMNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2E15|A Chain A, Crystal Structure Of Arg173 To Asn Mutant Of Diphthine
Synthase
pdb|2E15|B Chain B, Crystal Structure Of Arg173 To Asn Mutant Of Diphthine
Synthase
Length = 265
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2PB5|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2PB5|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPMAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2ED5|A Chain A, Mutant S147m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|2ED5|B Chain B, Mutant S147m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2E7R|A Chain A, Crystal Structure Of Glu54 To Arg Mutant Of Diphthine
Synthase
pdb|2E7R|B Chain B, Crystal Structure Of Glu54 To Arg Mutant Of Diphthine
Synthase
Length = 265
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKRIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2DV7|A Chain A, Crystal Structure Of Lys187 To Arg Mutant Of Diphthine
Synthase
pdb|2DV7|B Chain B, Crystal Structure Of Lys187 To Arg Mutant Of Diphthine
Synthase
Length = 265
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2PCK|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2PCK|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2P6I|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2P6I|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2EN5|A Chain A, Mutant R262h Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|2EN5|B Chain B, Mutant R262h Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2ENI|A Chain A, Mutant F197m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|2ENI|B Chain B, Mutant F197m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EJZ|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (y11m)
pdb|2EJZ|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (y11m)
Length = 265
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLMDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2OWV|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2OWV|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2EJJ|A Chain A, Mutant K129m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|2EJJ|B Chain B, Mutant K129m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2EH4|A Chain A, Mutant T146m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|2EH4|B Chain B, Mutant T146m Structure Of Ph0725 From Pyrococcus
Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EGL|A Chain A, Crystal Structure Of Glu171 To Lys Mutant Of Diphthine
Synthase
pdb|2EGL|B Chain B, Crystal Structure Of Glu171 To Lys Mutant Of Diphthine
Synthase
Length = 265
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2HR8|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2HR8|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2P6L|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2P6L|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2E8S|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|2E8S|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3
Length = 265
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2E17|A Chain A, Crystal Structure Of Arg173 To Ala Mutant Of Diphthine
Synthase
pdb|2E17|B Chain B, Crystal Structure Of Arg173 To Ala Mutant Of Diphthine
Synthase
Length = 265
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 303 SLALKLMHHGLPPHTPAAAIERGTTPQQRIVF 334
S+ + + H LPP TP E P R++F
Sbjct: 239 SILCEALQHNLPPFTPPPHTEDSVYPMPRVIF 270
>pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
Length = 757
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 303 SLALKLMHHGLPPHTPAAAIERGTTPQQRIVF 334
S+ + + H LPP TP E P R++F
Sbjct: 239 SILCEALQHNLPPFTPPPHTEDSVYPMPRVIF 270
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 303 SLALKLMHHGLPPHTPAAAIERGTTPQQRIVF 334
S+ + + H LPP TP E P R++F
Sbjct: 239 SILCEALQHNLPPFTPPPHTEDSVYPMPRVIF 270
>pdb|2DXV|A Chain A, Crystal Structure Of Glu54 To His Mutant Of Diphthine
Synthase
pdb|2DXV|B Chain B, Crystal Structure Of Glu54 To His Mutant Of Diphthine
Synthase
Length = 265
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKHIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|1N52|A Chain A, Cap Binding Complex
pdb|1N54|A Chain A, Cap Binding Complex M7gpppg Free
pdb|3FEX|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 790
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 303 SLALKLMHHGLPPHTPAAAIERGTTPQQRIVF 334
S+ + + H LPP TP E P R++F
Sbjct: 258 SILCEALQHNLPPFTPPPHTEDSVYPMPRVIF 289
>pdb|2OWF|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2ELE|A Chain A, Mutant V18c Structure Of Ph0725 From Pyrococcus Horikoshii
Ot3
pdb|2ELE|B Chain B, Mutant V18c Structure Of Ph0725 From Pyrococcus Horikoshii
Ot3
Length = 265
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITCKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|1VCE|A Chain A, Crystal Structure Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|1VCE|B Chain B, Crystal Structure Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3
Length = 265
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L + L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLXAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2DV3|A Chain A, Crystal Structure Of Leu65 To Arg Mutant Of Diphthine
Synthase
pdb|2DV3|B Chain B, Crystal Structure Of Leu65 To Arg Mutant Of Diphthine
Synthase
Length = 265
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSR--TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR + ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVERNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2E8R|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3
pdb|2E8R|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3
Length = 265
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAMKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGI 247
+A GI
Sbjct: 117 YSAVGI 122
>pdb|2PCA|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2PCA|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V + GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFMTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2P5C|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2P5C|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDP+V E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPMVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EL1|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L44m)
pdb|2EL1|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L44m)
Length = 265
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ + + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTMGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2EJK|A Chain A, Mutant L38m Structure Of Ph0725 From Pyrococcus Horikoshii
Ot3
pdb|2EJK|B Chain B, Mutant L38m Structure Of Ph0725 From Pyrococcus Horikoshii
Ot3
Length = 265
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y +++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSMMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ ++L A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVLPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
>pdb|2HUT|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2HUT|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLL---LYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+Y +G G D +T+K +++ +K D + Y L++ L + +GK
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQK-----LIGKEIRV 57
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI--PGI 241
SR E++ +++ A+ V L GDPLV E ++ G++ VI P I
Sbjct: 58 LSREDVELNFENIVMPLAKEN-DVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSI 116
Query: 242 TAASGIAAELGIPLTHRGVANSVRFLTGH 270
+A GI G+ + G + +V + G+
Sbjct: 117 YSAVGIT---GLHIYKFGKSATVAYPEGN 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,921,863
Number of Sequences: 62578
Number of extensions: 464051
Number of successful extensions: 1246
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 108
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)