Query 016852
Match_columns 381
No_of_seqs 193 out of 1411
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:23:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1527 Uroporphyrin III methy 100.0 1.9E-61 4.1E-66 463.1 21.9 370 1-381 105-506 (506)
2 COG0007 CysG Uroporphyrinogen- 100.0 2.5E-46 5.4E-51 350.4 27.7 236 125-364 2-237 (244)
3 PLN02625 uroporphyrin-III C-me 100.0 3.3E-44 7.2E-49 344.2 28.1 245 125-369 13-257 (263)
4 PRK06136 uroporphyrin-III C-me 100.0 1.7E-43 3.8E-48 335.7 27.5 247 125-371 1-247 (249)
5 PRK07168 bifunctional uroporph 100.0 3.3E-42 7.2E-47 354.0 27.4 239 126-366 2-240 (474)
6 TIGR01469 cobA_cysG_Cterm urop 100.0 1.4E-41 3.1E-46 319.7 27.3 236 128-364 1-236 (236)
7 PRK15473 cbiF cobalt-precorrin 100.0 3E-41 6.5E-46 322.8 27.9 241 125-372 6-251 (257)
8 PRK10637 cysG siroheme synthas 100.0 4.1E-41 8.9E-46 345.9 28.8 284 79-368 127-452 (457)
9 COG2875 CobM Precorrin-4 methy 100.0 7.7E-41 1.7E-45 307.2 24.3 234 126-366 2-236 (254)
10 TIGR01465 cobM_cbiF precorrin- 100.0 3.2E-40 7E-45 309.4 27.1 227 129-362 1-228 (229)
11 TIGR00522 dph5 diphthine synth 100.0 7.3E-36 1.6E-40 285.7 22.9 223 128-362 1-243 (257)
12 PRK05787 cobalt-precorrin-6Y C 100.0 1.2E-35 2.5E-40 274.9 22.2 209 128-361 1-210 (210)
13 PRK15478 cbiH cobalt-precorrin 100.0 8.1E-35 1.8E-39 276.0 25.4 219 128-362 1-226 (241)
14 PF00590 TP_methylase: Tetrapy 100.0 6.2E-36 1.3E-40 275.6 17.0 201 128-341 1-210 (210)
15 PRK05948 precorrin-2 methyltra 100.0 9.5E-35 2E-39 274.9 23.8 221 125-360 2-235 (238)
16 PRK05765 precorrin-3B C17-meth 100.0 1.3E-34 2.8E-39 275.5 23.7 222 127-364 2-229 (246)
17 TIGR01466 cobJ_cbiH precorrin- 100.0 4.4E-34 9.6E-39 270.0 24.4 218 129-363 1-226 (239)
18 COG2241 CobL Precorrin-6B meth 100.0 8.1E-35 1.8E-39 268.4 18.1 205 128-361 1-208 (210)
19 TIGR01467 cobI_cbiL precorrin- 100.0 3.6E-34 7.7E-39 269.3 21.6 218 127-359 1-230 (230)
20 PRK05576 cobalt-precorrin-2 C( 100.0 5.6E-34 1.2E-38 268.1 22.5 215 126-359 1-226 (229)
21 PRK05990 precorrin-2 C(20)-met 100.0 1.3E-33 2.9E-38 267.7 24.0 217 126-359 2-236 (241)
22 TIGR02467 CbiE precorrin-6y C5 100.0 7.3E-34 1.6E-38 262.7 19.4 202 131-354 1-203 (204)
23 PTZ00175 diphthine synthase; P 100.0 3.3E-33 7.2E-38 268.6 23.9 220 128-361 2-257 (270)
24 PRK05991 precorrin-3B C17-meth 100.0 6.2E-33 1.3E-37 264.4 24.2 217 126-362 2-231 (250)
25 PRK14994 SAM-dependent 16S rib 100.0 1.1E-31 2.4E-36 259.9 26.8 224 123-360 8-235 (287)
26 COG1010 CobJ Precorrin-3B meth 100.0 6.4E-32 1.4E-36 249.1 22.3 217 125-361 1-229 (249)
27 PRK04160 diphthine synthase; P 100.0 2.5E-31 5.4E-36 254.5 23.1 220 128-362 1-242 (258)
28 COG2243 CobF Precorrin-2 methy 100.0 5.9E-31 1.3E-35 245.7 21.4 219 126-360 1-230 (234)
29 PRK08284 precorrin 6A synthase 100.0 1.1E-30 2.3E-35 249.2 22.2 201 126-345 1-229 (253)
30 TIGR02434 CobF precorrin-6A sy 100.0 1.9E-30 4.2E-35 246.9 21.1 199 127-345 1-228 (249)
31 COG0313 Predicted methyltransf 99.9 1E-23 2.2E-28 200.0 23.5 222 124-359 2-225 (275)
32 COG1798 DPH5 Diphthamide biosy 99.9 4.6E-23 1E-27 191.9 20.2 218 128-360 1-239 (260)
33 TIGR00096 probable S-adenosylm 99.9 1.8E-21 3.8E-26 187.5 21.3 217 128-359 1-222 (276)
34 KOG3123 Diphthine synthase [Tr 99.8 4E-19 8.6E-24 161.3 11.2 222 128-362 1-257 (272)
35 COG3956 Protein containing tet 99.6 4.9E-14 1.1E-18 136.4 14.8 217 126-362 2-226 (488)
36 TIGR01921 DAP-DH diaminopimela 82.3 9.4 0.0002 38.2 9.5 153 146-310 54-218 (324)
37 TIGR03365 Bsubt_queE 7-cyano-7 75.4 7.1 0.00015 37.0 6.1 59 188-246 56-114 (238)
38 COG1504 Uncharacterized conser 71.5 14 0.00031 31.2 6.1 47 98-160 49-97 (121)
39 COG0602 NrdG Organic radical a 66.5 15 0.00033 34.3 6.1 56 186-242 54-109 (212)
40 COG0391 Uncharacterized conser 64.7 87 0.0019 31.4 11.2 107 126-239 166-289 (323)
41 cd05126 Mth938 Mth938 domain. 64.4 56 0.0012 27.6 8.6 46 97-158 45-90 (117)
42 cd01524 RHOD_Pyr_redox Member 60.6 77 0.0017 24.5 8.7 84 142-241 1-84 (90)
43 TIGR02495 NrdG2 anaerobic ribo 60.3 30 0.00064 31.0 6.7 55 188-243 47-101 (191)
44 PRK11914 diacylglycerol kinase 56.8 28 0.00061 33.9 6.3 59 193-256 53-111 (306)
45 TIGR03822 AblA_like_2 lysine-2 55.5 1.6E+02 0.0035 29.1 11.5 29 204-232 136-166 (321)
46 TIGR00238 KamA family protein. 55.5 78 0.0017 31.5 9.3 28 204-231 159-188 (331)
47 PRK00861 putative lipid kinase 54.6 31 0.00068 33.4 6.2 55 197-256 50-104 (300)
48 COG1154 Dxs Deoxyxylulose-5-ph 54.2 46 0.001 36.0 7.6 58 282-344 546-607 (627)
49 KOG4166 Thiamine pyrophosphate 53.5 70 0.0015 33.5 8.4 38 126-163 154-191 (675)
50 TIGR03821 AblA_like_1 lysine-2 52.4 1.8E+02 0.0038 28.9 11.2 27 204-230 142-170 (321)
51 PRK05301 pyrroloquinoline quin 52.1 51 0.0011 33.1 7.5 55 188-242 46-100 (378)
52 KOG4131 Ngg1-interacting facto 51.9 99 0.0022 29.8 8.6 105 103-216 160-269 (272)
53 COG1597 LCB5 Sphingosine kinas 50.1 51 0.0011 32.4 6.9 59 193-256 47-106 (301)
54 TIGR02109 PQQ_syn_pqqE coenzym 49.8 58 0.0013 32.4 7.4 53 188-240 37-89 (358)
55 TIGR01819 F420_cofD LPPG:FO 2- 49.4 52 0.0011 32.5 6.7 72 134-228 165-238 (297)
56 PF04055 Radical_SAM: Radical 49.2 42 0.00091 28.0 5.5 65 188-252 28-100 (166)
57 COG1712 Predicted dinucleotide 48.0 1.5E+02 0.0032 28.5 9.2 114 128-250 2-131 (255)
58 PRK10017 colanic acid biosynth 47.7 56 0.0012 33.9 7.0 46 128-173 150-197 (426)
59 COG0855 Ppk Polyphosphate kina 47.4 81 0.0018 34.5 8.2 93 146-241 336-433 (696)
60 TIGR02668 moaA_archaeal probab 46.8 72 0.0015 30.9 7.4 53 188-240 40-93 (302)
61 PRK13337 putative lipid kinase 46.1 67 0.0015 31.2 7.1 53 199-256 52-106 (304)
62 cd06167 LabA_like LabA_like pr 46.0 56 0.0012 27.8 5.8 33 204-240 99-131 (149)
63 PF04412 DUF521: Protein of un 43.8 93 0.002 32.1 7.8 123 97-241 223-355 (400)
64 COG2870 RfaE ADP-heptose synth 43.2 1.1E+02 0.0024 31.8 8.0 72 171-244 111-183 (467)
65 PF02441 Flavoprotein: Flavopr 42.5 37 0.0008 28.7 4.1 46 205-251 1-46 (129)
66 TIGR02666 moaA molybdenum cofa 42.1 1.2E+02 0.0027 29.8 8.3 54 188-241 43-98 (334)
67 PRK06703 flavodoxin; Provision 41.8 1.1E+02 0.0024 26.3 7.1 87 127-216 3-94 (151)
68 PRK13059 putative lipid kinase 41.6 88 0.0019 30.4 7.1 54 198-256 50-105 (295)
69 COG1509 KamA Lysine 2,3-aminom 41.6 1.3E+02 0.0028 30.6 8.2 116 189-315 145-283 (369)
70 PRK05569 flavodoxin; Provision 41.5 2.1E+02 0.0046 24.0 9.0 102 129-234 5-113 (141)
71 TIGR01826 CofD_related conserv 41.3 2E+02 0.0043 28.7 9.5 85 127-215 151-251 (310)
72 TIGR03820 lys_2_3_AblA lysine- 40.6 2.9E+02 0.0062 28.7 10.8 28 204-231 155-184 (417)
73 TIGR00288 conserved hypothetic 40.3 58 0.0013 29.3 5.0 47 189-239 90-136 (160)
74 COG1066 Sms Predicted ATP-depe 40.3 2.9E+02 0.0063 28.9 10.6 110 207-330 94-224 (456)
75 cd07186 CofD_like LPPG:FO 2-ph 40.0 1.9E+02 0.004 28.8 8.9 69 140-228 171-241 (303)
76 PF06057 VirJ: Bacterial virul 39.4 52 0.0011 30.5 4.7 41 206-249 3-43 (192)
77 COG1634 Uncharacterized Rossma 39.3 58 0.0013 31.0 5.1 72 126-214 52-124 (232)
78 PF13394 Fer4_14: 4Fe-4S singl 38.4 37 0.0008 27.7 3.4 55 189-243 30-91 (119)
79 cd01335 Radical_SAM Radical SA 38.4 99 0.0022 26.4 6.3 52 192-243 32-85 (204)
80 cd06356 PBP1_Amide_Urea_BP_lik 38.0 3.8E+02 0.0082 25.9 11.3 122 128-250 40-182 (334)
81 PF09822 ABC_transp_aux: ABC-t 37.2 3.6E+02 0.0078 25.5 10.5 50 190-240 131-189 (271)
82 PF01936 NYN: NYN domain; Int 37.0 44 0.00096 28.0 3.7 31 205-239 96-126 (146)
83 PRK13057 putative lipid kinase 36.6 88 0.0019 30.1 6.2 51 201-256 47-97 (287)
84 cd07187 YvcK_like family of mo 36.6 2.8E+02 0.006 27.6 9.6 29 128-160 155-183 (308)
85 PRK13384 delta-aminolevulinic 36.4 3.5E+02 0.0075 27.1 10.1 160 50-233 4-186 (322)
86 TIGR01470 cysG_Nterm siroheme 36.3 2E+02 0.0043 26.5 8.2 90 127-238 10-100 (205)
87 PRK13055 putative lipid kinase 36.0 1.1E+02 0.0024 30.3 6.9 51 200-255 55-107 (334)
88 PRK13361 molybdenum cofactor b 35.9 1.8E+02 0.0038 28.7 8.3 57 188-244 45-103 (329)
89 PRK14719 bifunctional RNAse/5- 35.8 1.5E+02 0.0033 30.0 7.9 59 167-236 38-99 (360)
90 COG1736 DPH2 Diphthamide synth 35.8 4.8E+02 0.01 26.4 16.5 144 94-255 25-171 (347)
91 PRK05443 polyphosphate kinase; 35.7 1.8E+02 0.0038 32.3 8.9 89 146-235 332-425 (691)
92 PRK13054 lipid kinase; Reviewe 35.5 1.1E+02 0.0024 29.7 6.7 52 200-256 52-107 (300)
93 PRK05562 precorrin-2 dehydroge 35.2 16 0.00035 34.6 0.7 37 79-116 140-176 (223)
94 COG1432 Uncharacterized conser 35.0 1E+02 0.0023 27.9 6.0 46 193-242 99-144 (181)
95 PRK00421 murC UDP-N-acetylmura 34.9 5.2E+02 0.011 26.6 12.0 40 189-230 419-458 (461)
96 cd06379 PBP1_iGluR_NMDA_NR1 N- 34.2 4.6E+02 0.01 25.8 12.3 38 289-326 214-251 (377)
97 PRK05414 urocanate hydratase; 33.9 2.1E+02 0.0046 30.5 8.6 117 103-243 150-266 (556)
98 COG2987 HutU Urocanate hydrata 33.2 3.2E+02 0.007 28.8 9.6 115 103-243 150-266 (561)
99 TIGR01754 flav_RNR ribonucleot 33.1 3E+02 0.0065 23.3 8.9 29 191-219 68-96 (140)
100 PRK13303 L-aspartate dehydroge 33.0 1.9E+02 0.004 27.8 7.7 52 190-241 71-122 (265)
101 TIGR03855 NAD_NadX aspartate d 33.0 3E+02 0.0066 25.9 9.0 85 144-240 13-97 (229)
102 TIGR02493 PFLA pyruvate format 32.7 97 0.0021 28.6 5.6 51 189-239 47-101 (235)
103 PRK12361 hypothetical protein; 32.6 1.2E+02 0.0026 32.2 6.9 51 199-254 292-343 (547)
104 smart00046 DAGKc Diacylglycero 32.3 1.1E+02 0.0024 25.6 5.3 47 205-256 50-101 (124)
105 PLN02958 diacylglycerol kinase 31.5 6.4E+02 0.014 26.5 13.7 51 202-256 166-226 (481)
106 PRK06718 precorrin-2 dehydroge 31.3 19 0.00041 33.3 0.5 37 79-116 124-161 (202)
107 PF13353 Fer4_12: 4Fe-4S singl 31.2 59 0.0013 27.1 3.6 56 192-247 39-99 (139)
108 PF06506 PrpR_N: Propionate ca 31.1 1.5E+02 0.0032 26.5 6.3 63 145-216 25-89 (176)
109 TIGR03702 lip_kinase_YegS lipi 31.0 1.5E+02 0.0033 28.5 6.9 51 201-256 49-103 (293)
110 PRK09271 flavodoxin; Provision 30.7 3.6E+02 0.0079 23.4 9.9 89 129-219 4-100 (160)
111 PF03808 Glyco_tran_WecB: Glyc 30.6 1.4E+02 0.0031 26.6 6.1 71 148-231 1-71 (172)
112 PRK13762 tRNA-modifying enzyme 30.6 1.3E+02 0.0029 29.8 6.4 39 205-243 131-169 (322)
113 PRK08535 translation initiatio 30.5 4E+02 0.0086 26.3 9.7 56 192-250 132-188 (310)
114 cd05560 Xcc1710_like Xcc1710_l 30.2 1.2E+02 0.0025 25.2 5.1 44 97-157 39-82 (109)
115 cd05014 SIS_Kpsf KpsF-like pro 30.0 3E+02 0.0066 22.4 8.2 26 127-154 1-26 (128)
116 KOG0024 Sorbitol dehydrogenase 29.8 1.8E+02 0.0038 29.4 6.9 34 126-161 170-203 (354)
117 PRK02705 murD UDP-N-acetylmura 29.6 3.7E+02 0.008 27.5 9.7 14 96-109 296-309 (459)
118 PRK00164 moaA molybdenum cofac 29.3 3.1E+02 0.0067 26.8 8.8 53 188-240 49-103 (331)
119 PRK13606 LPPG:FO 2-phospho-L-l 29.2 3.1E+02 0.0067 27.3 8.5 67 140-228 173-241 (303)
120 PRK07475 hypothetical protein; 29.2 79 0.0017 30.1 4.4 86 142-243 66-159 (245)
121 COG0206 FtsZ Cell division GTP 28.7 3.5E+02 0.0075 27.3 8.9 104 125-232 10-125 (338)
122 TIGR01228 hutU urocanate hydra 28.6 2.9E+02 0.0063 29.4 8.5 116 103-243 141-257 (545)
123 TIGR00284 dihydropteroate synt 28.6 7.2E+02 0.016 26.5 11.7 108 127-243 179-291 (499)
124 TIGR03470 HpnH hopanoid biosyn 28.2 1.5E+02 0.0033 29.1 6.4 54 189-245 60-113 (318)
125 PLN02951 Molybderin biosynthes 28.2 1.7E+02 0.0037 29.7 6.8 53 189-241 91-146 (373)
126 TIGR00511 ribulose_e2b2 ribose 28.1 4.8E+02 0.011 25.6 9.8 55 193-250 128-183 (301)
127 PF13380 CoA_binding_2: CoA bi 27.6 3.6E+02 0.0077 22.4 11.0 97 128-240 2-109 (116)
128 PF01175 Urocanase: Urocanase; 27.6 3.6E+02 0.0077 28.9 9.0 115 103-242 140-255 (546)
129 PLN02490 MPBQ/MSBQ methyltrans 27.5 6.4E+02 0.014 25.3 14.4 27 47-73 58-84 (340)
130 PRK01122 potassium-transportin 27.4 4.3E+02 0.0092 29.3 10.1 62 192-254 412-485 (679)
131 cd00248 Mth938-like Mth938-lik 27.0 1.5E+02 0.0033 24.5 5.2 45 97-157 38-82 (109)
132 PRK01710 murD UDP-N-acetylmura 27.0 5.8E+02 0.013 26.3 10.7 28 189-217 411-438 (458)
133 PF13651 EcoRI_methylase: Aden 26.6 1.1E+02 0.0023 30.8 4.8 58 138-198 121-181 (336)
134 PF13090 PP_kinase_C: Polyphos 26.5 2.3E+02 0.005 28.7 7.1 92 147-241 3-99 (352)
135 PRK01390 murD UDP-N-acetylmura 26.4 5.3E+02 0.011 26.5 10.3 15 96-110 302-316 (460)
136 TIGR00524 eIF-2B_rel eIF-2B al 26.4 3.5E+02 0.0075 26.7 8.4 54 194-249 140-194 (303)
137 COG1063 Tdh Threonine dehydrog 26.0 2.3E+02 0.005 28.2 7.2 77 127-215 170-249 (350)
138 COG0421 SpeE Spermidine syntha 26.0 1.3E+02 0.0027 29.6 5.2 82 126-215 77-160 (282)
139 PF01008 IF-2B: Initiation fac 25.9 1E+02 0.0023 29.5 4.6 55 193-250 120-175 (282)
140 PRK10799 metal-binding protein 25.9 5.7E+02 0.012 24.2 10.0 106 97-215 136-246 (247)
141 PF00308 Bac_DnaA: Bacterial d 25.8 3.1E+02 0.0067 25.4 7.7 111 127-239 35-165 (219)
142 TIGR02826 RNR_activ_nrdG3 anae 25.4 1.6E+02 0.0035 25.7 5.3 51 188-240 46-96 (147)
143 TIGR01769 GGGP geranylgeranylg 25.3 5.6E+02 0.012 23.8 11.9 63 188-250 131-194 (205)
144 PF01784 NIF3: NIF3 (NGG1p int 23.8 2E+02 0.0042 27.2 6.0 79 98-181 142-220 (241)
145 cd05560 Xcc1710_like Xcc1710_l 22.9 2.8E+02 0.0061 22.9 6.1 36 205-241 53-88 (109)
146 cd05013 SIS_RpiR RpiR-like pro 22.8 4.1E+02 0.0089 21.4 9.4 48 197-246 6-53 (139)
147 cd04922 ACT_AKi-HSDH-ThrA_2 AC 22.8 1.1E+02 0.0023 21.8 3.2 31 127-157 2-32 (66)
148 COG5151 SSL1 RNA polymerase II 22.8 52 0.0011 32.7 1.8 37 23-64 355-391 (421)
149 cd07044 CofD_YvcK Family of Co 22.8 6.3E+02 0.014 25.1 9.5 21 140-160 162-182 (309)
150 TIGR03278 methan_mark_10 putat 22.7 2.3E+02 0.0049 29.3 6.5 49 189-237 55-107 (404)
151 cd06404 PB1_aPKC PB1 domain is 22.6 2.2E+02 0.0047 22.8 5.0 54 187-240 19-83 (83)
152 PF14824 Sirohm_synth_M: Siroh 22.6 6.9 0.00015 25.3 -2.8 16 79-95 10-25 (30)
153 cd04937 ACT_AKi-DapG-BS_2 ACT 22.3 1.1E+02 0.0023 22.4 3.1 31 127-157 2-32 (64)
154 COG1245 Predicted ATPase, RNas 22.2 1.6E+02 0.0034 31.3 5.2 62 146-222 225-297 (591)
155 COG0716 FldA Flavodoxins [Ener 22.2 5.1E+02 0.011 22.2 8.0 90 127-219 3-97 (151)
156 PRK13304 L-aspartate dehydroge 21.8 7E+02 0.015 23.7 9.4 49 190-241 71-122 (265)
157 PRK11145 pflA pyruvate formate 21.7 1.9E+02 0.0041 27.0 5.4 52 188-239 51-106 (246)
158 PRK00683 murD UDP-N-acetylmura 21.7 4.5E+02 0.0097 26.7 8.5 14 232-245 382-395 (418)
159 PF00389 2-Hacid_dh: D-isomer 21.7 4.5E+02 0.0097 21.8 7.3 91 142-247 7-98 (133)
160 PRK09875 putative hydrolase; P 21.6 7.7E+02 0.017 24.1 15.6 130 188-330 96-249 (292)
161 PRK10076 pyruvate formate lyas 21.5 2E+02 0.0044 26.7 5.5 53 188-240 19-75 (213)
162 COG3737 Uncharacterized conser 21.5 1.9E+02 0.0041 24.9 4.7 51 91-157 49-99 (127)
163 PRK13307 bifunctional formalde 21.3 2.3E+02 0.0049 29.2 6.2 107 189-308 183-296 (391)
164 KOG1615 Phosphoserine phosphat 21.3 6E+02 0.013 24.0 8.2 43 215-257 87-131 (227)
165 cd01137 PsaA Metal binding pro 21.2 1.5E+02 0.0032 28.8 4.7 68 78-160 4-74 (287)
166 KOG4355 Predicted Fe-S oxidore 21.2 4.3E+02 0.0094 27.4 7.9 140 185-356 213-374 (547)
167 TIGR01085 murE UDP-N-acetylmur 21.1 9.1E+02 0.02 24.8 12.5 103 96-218 338-452 (464)
168 TIGR00486 YbgI_SA1388 dinuclea 20.9 6E+02 0.013 24.0 8.7 73 103-180 141-216 (249)
169 COG0771 MurD UDP-N-acetylmuram 20.9 6.4E+02 0.014 26.5 9.4 29 189-218 399-427 (448)
170 PRK01368 murD UDP-N-acetylmura 20.8 7.6E+02 0.016 25.6 10.1 15 95-109 289-303 (454)
171 PF10686 DUF2493: Protein of u 20.8 3.9E+02 0.0084 20.4 8.7 48 189-239 16-64 (71)
172 cd05126 Mth938 Mth938 domain. 20.8 2.7E+02 0.0058 23.5 5.6 38 203-240 57-94 (117)
173 PLN02582 1-deoxy-D-xylulose-5- 20.6 3.7E+02 0.008 29.8 8.0 78 263-344 571-651 (677)
174 cd04920 ACT_AKiii-DAPDC_2 ACT 20.6 1.4E+02 0.003 21.8 3.4 31 128-158 2-32 (63)
175 cd07399 MPP_YvnB Bacillus subt 20.5 3.2E+02 0.007 25.0 6.6 53 191-243 21-80 (214)
176 PF01933 UPF0052: Uncharacteri 20.5 1.4E+02 0.003 29.5 4.3 32 126-159 159-190 (300)
177 PRK11930 putative bifunctional 20.5 5.3E+02 0.011 28.9 9.4 29 189-218 418-447 (822)
178 COG1184 GCD2 Translation initi 20.4 3.8E+02 0.0082 26.6 7.3 57 192-251 131-188 (301)
179 PRK11929 putative bifunctional 20.4 1E+03 0.022 27.1 11.8 107 95-217 360-477 (958)
180 cd04915 ACT_AK-Ectoine_2 ACT d 20.3 1.1E+02 0.0024 22.6 2.8 30 127-157 3-32 (66)
181 PF00781 DAGK_cat: Diacylglyce 20.2 1.6E+02 0.0034 24.6 4.1 47 205-256 55-105 (130)
182 COG1922 WecG Teichoic acid bio 20.1 7.7E+02 0.017 23.8 9.2 150 187-362 19-172 (253)
183 COG1832 Predicted CoA-binding 20.1 2.7E+02 0.0059 24.5 5.5 102 196-331 8-111 (140)
184 PRK00377 cbiT cobalt-precorrin 20.1 6.3E+02 0.014 22.6 12.4 60 88-160 13-73 (198)
185 TIGR01470 cysG_Nterm siroheme 20.1 43 0.00093 31.0 0.6 36 79-115 124-160 (205)
No 1
>KOG1527 consensus Uroporphyrin III methyltransferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.9e-61 Score=463.06 Aligned_cols=370 Identities=55% Similarity=0.856 Sum_probs=332.6
Q ss_pred CcccccccccccCCCC------cccccccc-----ccCCCCCCcceeeeecCCCCCCCCCCCCCccchhhhHhh------
Q 016852 1 MALLYRLSFSSSSSPL------SSACNSIK-----QFNPISPKSFICSLHFNDTSSSSSSSSPFTEKHSFERYQ------ 63 (381)
Q Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 63 (381)
|++++|||++++-.+. -.+|++.+ ++|| +|++++|.--..++|+.||||++++|||+
T Consensus 105 ~c~~~RIPin~~~~pe~~sfnli~tW~~p~lqisl~t~~------ngc~lanri~r~~~SslP~~~~e~ver~gk~r~in 178 (506)
T KOG1527|consen 105 MCLVQRIPINSSDSPEFCSFNLIRTWQQPRLQISLNTTP------NGCLLANRIKRASSSSLPFTEKESVERYGKDRAIN 178 (506)
T ss_pred HHHheeecccccCCcccccccccccccCCceeeeeecCC------ceeeehhhhhhhhhccCCCCchHHHHHhccccccc
Confidence 6889999988774432 23566665 4555 99999984444456789999999999999
Q ss_pred ----hhhhhhccccCCCCCCCCCCccccc-cccc--------ccccccCHHHHHHHHHHHHHhhhhcccCCCC--CCCCE
Q 016852 64 ----RDQWVYSSLQHNRPEPTSPSVSLDA-DSTR--------RNDIALQLPELKKLLQVLREKREEDRVGAEK--CGPGN 128 (381)
Q Consensus 64 ----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~--~~~g~ 128 (381)
||||+|+..+..++ ++-...|+++ ..+| +++.+.++|++++.|+..+++++++-..++. ...|.
T Consensus 179 e~per~QWl~~~~e~~P~-~kls~~~~eD~~~v~s~n~k~~~e~~~~s~lp~~~e~l~~~~~k~~l~~~~~e~gP~k~G~ 257 (506)
T KOG1527|consen 179 EDPERDQWLYKAVEPTPP-SKLSPSPFEDEVFVRSDNFKLKLENDIASQLPELKELLAVLKEKRVLGCKGGECGPHKLGD 257 (506)
T ss_pred CChhHHHHHHhhccCCCc-ccCCCCcccceeeeecCccccccccchhccCccHHHHHHhhhhcccccccCcccCccccCc
Confidence 99999999998888 6777788877 6688 8999999999999999999999987433322 23499
Q ss_pred EEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEE
Q 016852 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVV 208 (381)
Q Consensus 129 l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~Vv 208 (381)
||+||.|||+|++||++|++.|+.||+|++++.+.+.++++++++.+.++.+|..+++++.++|+.+.+.+.+..|..||
T Consensus 258 i~LvGsGPGsp~lLT~~A~~~I~sAD~~LaDkLVp~avL~Lipp~t~lfia~KfpGna~raQ~Elh~~~l~~l~~G~~VV 337 (506)
T KOG1527|consen 258 IYLVGSGPGSPELLTLKAVRVIQSADLLLADKLVPNAVLELIPPDTRLFIAGKFPGNASRAQEELHELLLNFLEAGATVV 337 (506)
T ss_pred EEEEccCCCChhheeHHHHHHHhhcceehhhhcccHHHHhhcCCCCceEEeecCCCchhHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHHhcCC
Q 016852 209 RLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADP 288 (381)
Q Consensus 209 vL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~l~~~ 288 (381)
+|+.|||++||+|++++.++++.|+..+|||||||..++++.+|||+++++....+.|+++|||++.... .....+
T Consensus 338 RLKqGDPyifGRGGEE~~Ff~qhGy~p~ViPGIssal~~~~~agIP~ThRgvAdqvl~cTGtgrKG~~p~----ip~fvp 413 (506)
T KOG1527|consen 338 RLKQGDPYIFGRGGEEMDFFQQHGYRPQVIPGISSALGIAAEAGIPLTHRGVADQVLFCTGTGRKGGTPA----IPAFVP 413 (506)
T ss_pred EecCCCceeecCCchhhhhHHhCCceeEeccchhhhhhhhHhcCCCcccccccceEEEEeccCCCCCCCC----ccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999876431 123446
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccccCCCCc
Q 016852 289 DSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLSPFWP 368 (381)
Q Consensus 289 ~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~~~~~~~ 368 (381)
..|.|+||..+++.-+++.|+++||+.++|++++||.++|+||+++.+|+++.+.+...+..+|.++|+|++++..+.|+
T Consensus 414 ~~TtVflMaLhrl~~L~q~L~~hGwp~d~Pa~ivERgscPdQR~vf~~Lkdv~ee~~~~gs~pPglliiGk~vn~l~~~~ 493 (506)
T KOG1527|consen 414 DTTTVFLMALHRLPSLAQKLMDHGWPSDTPAVIVERGSCPDQRTVFAELKDVAEEIQSAGSVPPGLLIIGKVVNLLPLWP 493 (506)
T ss_pred CceeEeeehhcchHHHHHHHHhcCCCCCCCeeeEeccCCchHHHHHHHHHHHHHHHHhccCCCCcEEEEeeeeccccccc
Confidence 78999999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred cchhhhhhhhhcC
Q 016852 369 ISSKEATCLAEAK 381 (381)
Q Consensus 369 ~~~~~~~~~~~~~ 381 (381)
...|+.||++|.+
T Consensus 494 ~~~~~~s~~~~~~ 506 (506)
T KOG1527|consen 494 HCTKESSCLVETR 506 (506)
T ss_pred ccCcccceeeecC
Confidence 9999999999864
No 2
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=100.00 E-value=2.5e-46 Score=350.38 Aligned_cols=236 Identities=53% Similarity=0.870 Sum_probs=221.9
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcC
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVG 204 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~G 204 (381)
.+|+||+||.|||||++||+||.++|++||+|+|++.+++.+++++++++++++++|..+.+...+++|.+.+.+++++|
T Consensus 2 ~~GkV~lVGAGPGdp~LLTlka~~~L~~ADvvlyD~LV~~~il~~~~~~a~~i~vGkr~g~~~~~q~eIn~~lv~~a~~G 81 (244)
T COG0007 2 KPGKVYLVGAGPGDPGLLTLRALRALQEADVVLYDRLVPEEVLALARRDAERIYVGKRPGGHSKPQDEINALLVELAREG 81 (244)
T ss_pred CcceEEEEecCCCChhhhhHHHHHHHhhCCEEEEcCcCCHHHHHhhccCCEEEEecCcCCCCCCCHHHHHHHHHHHHhcC
Confidence 46999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHH
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAEN 284 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~ 284 (381)
++||+|+.|||++||++.++++.+.+.|++++|+|||||..++++..|+|+++++...++.|+++|.+++.. .+..
T Consensus 82 ~~VVRLKgGDP~iFGRggEE~~~l~~~gI~~eVVPGiTSa~a~~a~agIPlT~R~~a~s~~~vTgh~~~~~~----~w~~ 157 (244)
T COG0007 82 KRVVRLKGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAIAAPAYAGIPLTHRGVASSFTFVTGHDRDGKL----DWEA 157 (244)
T ss_pred CeEEEecCCCCCeecCcHHHHHHHHHcCCceEEeCccchHHHHHHHcCCceeecCccceEEEEeCcCCCCCc----ChHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876431 1345
Q ss_pred hcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccccC
Q 016852 285 AADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLS 364 (381)
Q Consensus 285 l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~~~ 364 (381)
++....|+||||+.+++.++++.|+++|++++||++++++.++++|++..+||+++.+.....+...|.++|||++++.+
T Consensus 158 la~~~~TlVi~Mg~~~l~~i~~~Li~~G~~~~tpvAvi~~gt~~~Qr~~~gtL~~l~~~~~~~~~~~PaiiviG~vv~~~ 237 (244)
T COG0007 158 LARSVGTLVILMGASRLAEIARELIAHGRSPDTPVAVIENGTTPDQRVVVGTLGDLAELAEEAGLTPPALIVIGEVVNLR 237 (244)
T ss_pred hcccCCCEEEEeCcchHHHHHHHHHHcCCCCCCCEEEEEcCCCcceEEEEeEHHHHHHHHHhcCCCCCEEEEEcceeech
Confidence 66678899999999999999999999999999999999999999999999999999998766678899999999999843
No 3
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=100.00 E-value=3.3e-44 Score=344.25 Aligned_cols=245 Identities=76% Similarity=1.218 Sum_probs=215.1
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcC
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVG 204 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~G 204 (381)
++|+||+||+||||+++||++|+++|++||+|+++.++.+.++++++.+.+++++++........++++.+.+.+.+.+|
T Consensus 13 ~~g~l~vVG~GpGdp~~LTl~a~~~l~~ADvI~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 92 (263)
T PLN02625 13 GPGNVFLVGTGPGDPDLLTLKALRLLQTADVVLYDRLVSPDILDLVPPGAELLYVGKRGGYHSRTQEEIHELLLSFAEAG 92 (263)
T ss_pred CCCEEEEEEeCCCChHHhHHHHHHHHhcCCEEEEeCcCCHHHHHhcCCCCEEEecCCcCCccccCHHHHHHHHHHHHHCC
Confidence 36999999999999999999999999999999998888888888887777766665443444456788888888888899
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHH
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAEN 284 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~ 284 (381)
++||+|++|||+||+++.++++.+.+.|++++|||||||+++++|++|+||++++...++.++++|++....+....+..
T Consensus 93 ~~Vvvl~~GDP~~ys~~~~l~~~l~~~~~~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~i~s~h~~~~~~~~~~~~~~ 172 (263)
T PLN02625 93 KTVVRLKGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFLTGHDREGGTDPLDVAEA 172 (263)
T ss_pred CeEEEEcCCCchhhhhHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCccceEEEEecccCCCcccchhhHHH
Confidence 99999999999999999999999999899999999999999999999999998877667889999998654322223445
Q ss_pred hcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccccC
Q 016852 285 AADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLS 364 (381)
Q Consensus 285 l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~~~ 364 (381)
+...+.++|||+..++++++++.|.+.|+++++++++++++|+++|+|+.++++++.+.+.+..++.+++++||+++..+
T Consensus 173 ~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~el~~~~~~~~~~~~~vviig~~~~~~ 252 (263)
T PLN02625 173 AADPDTTLVVYMGLGTLPSLAEKLIAAGLPPDTPAAAVERGTTPEQRVVFGTLEDIAEDVAAAGLVSPTVIVVGEVVALS 252 (263)
T ss_pred HhCCCCeEEEECchhhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEEchhhCcc
Confidence 55667799999988899999999999999888999999999999999999999999997766778999999999999999
Q ss_pred CCCcc
Q 016852 365 PFWPI 369 (381)
Q Consensus 365 ~~~~~ 369 (381)
+.||-
T Consensus 253 ~~~~~ 257 (263)
T PLN02625 253 PLWPW 257 (263)
T ss_pred cccCh
Confidence 99983
No 4
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=1.7e-43 Score=335.67 Aligned_cols=247 Identities=52% Similarity=0.849 Sum_probs=213.1
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcC
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVG 204 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~G 204 (381)
|+|+||+||+||||+++||++|+++|++||+|+++.++.+.++++++++.+.+..++........++++.+.+.+.+.+|
T Consensus 1 ~~g~l~iVGvGpGdp~~lT~~A~~~L~~advI~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 80 (249)
T PRK06136 1 MMGKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVSPEILAYAKPDAELIYVGKRAGRHSTKQEEINRLLVDYARKG 80 (249)
T ss_pred CCcEEEEEEECCCChHHHHHHHHHHHhcCCEEEEcCCCCHHHHhhCCCCCEEEeCCCcCCCCCcCHHHHHHHHHHHHHCC
Confidence 46999999999999999999999999999999998877777888887666665555443334455677878888888899
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHH
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAEN 284 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~ 284 (381)
++||+|++|||+||+++.++++++++.|++++|||||||+++++|++|+||++++++.++.+++.|++.........++.
T Consensus 81 ~~V~~l~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (249)
T PRK06136 81 KVVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKLEPEVNWSA 160 (249)
T ss_pred CeEEEEeCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCcccCCcceeEEEEecccCCCccccccCHHH
Confidence 99999999999999999999999998899999999999999999999999999888878889999988643210111245
Q ss_pred hcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccccC
Q 016852 285 AADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLS 364 (381)
Q Consensus 285 l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~~~ 364 (381)
+.+...++|||+..+++.++++.|.+.|+++++++++++++|+++|+|+.++++++.+.+.+.+++.+++|+||+.+..+
T Consensus 161 l~~~~~~~vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~~~E~i~~~~l~el~~~~~~~~~~~~~vviig~~~~~~ 240 (249)
T PRK06136 161 LADGADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQSPAIIVIGEVVALR 240 (249)
T ss_pred HhCCCCeEEEECCHHHHHHHHHHHHHcCCCCCCeEEEEEeCCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEEchhhCcc
Confidence 66667899999999999999999999999888999999999999999999999999988777788999999999999988
Q ss_pred CCCccch
Q 016852 365 PFWPISS 371 (381)
Q Consensus 365 ~~~~~~~ 371 (381)
..+.=++
T Consensus 241 ~~~~~~~ 247 (249)
T PRK06136 241 AKLAWFE 247 (249)
T ss_pred ccccccc
Confidence 8766444
No 5
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=3.3e-42 Score=353.98 Aligned_cols=239 Identities=42% Similarity=0.667 Sum_probs=213.6
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCC
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGA 205 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk 205 (381)
.|+||+||+|||||++||+||+++|++||+|+|++.+.+.++++.++++++++.++....+...++++.+.+.+.+++|+
T Consensus 2 ~G~V~lVGaGPGdp~LLTlrA~~~L~~ADVVvydrlv~~~~l~~~~~~~~~i~~gk~~~~~~~~qe~i~~~l~~~a~~Gk 81 (474)
T PRK07168 2 NGYVYLVGAGPGDEGLITKKAIECLKRADIVLYDRLLNPFFLSYTKQTCELMYCGKMPKNHIMRQEMINAHLLQFAKEGK 81 (474)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhCCEEEEeCcCCHHHHhhcCCCcEEEeccCcCCCccccHHHHHHHHHHHHhCCC
Confidence 48999999999999999999999999999999998888877888888888888887766777778888888888989999
Q ss_pred eEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHHh
Q 016852 206 TVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENA 285 (381)
Q Consensus 206 ~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~l 285 (381)
+||+|++|||++||++.++++.+.+.|++++|||||||+++++|++|+||++++.+.++.++++|++....+.. .+..+
T Consensus 82 ~VvrL~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~viT~h~~~~~~~~~-~~~~l 160 (474)
T PRK07168 82 IVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGPLTDHG-KYNSS 160 (474)
T ss_pred EEEEEeCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEEccCcCCccccch-hHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999875321111 12334
Q ss_pred cCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccccCC
Q 016852 286 ADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLSP 365 (381)
Q Consensus 286 ~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~~~~ 365 (381)
. ...|+||||+..++++|++.|+++|+++++|+++++++|+++|+++.+||+++.+.+...++..|++++||+++.++.
T Consensus 161 ~-~~~tlV~lm~~~~l~~I~~~L~~~G~~~~tpvavv~~~t~~~Qri~~~tL~~l~~~~~~~~~~~pavivvG~vv~~~~ 239 (474)
T PRK07168 161 H-NSDTIAYYMGIKNLPTICENLRQAGKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKNENISNPSMTIVGDVVSLRN 239 (474)
T ss_pred c-CCCeEEEEcChhhHHHHHHHHHHcCcCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEEChHhcccc
Confidence 4 356999999999999999999999999999999999999999999999999999877777889999999999998765
Q ss_pred C
Q 016852 366 F 366 (381)
Q Consensus 366 ~ 366 (381)
.
T Consensus 240 ~ 240 (474)
T PRK07168 240 Q 240 (474)
T ss_pred c
Confidence 4
No 6
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=100.00 E-value=1.4e-41 Score=319.70 Aligned_cols=236 Identities=53% Similarity=0.867 Sum_probs=204.0
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeE
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATV 207 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~V 207 (381)
+||+||+||||+++||++|+++|++||+|+++.++.+.++++++++.+.+..++........++++.+.+.+.+++|++|
T Consensus 1 ~i~iVG~GpG~~~~lT~~a~~~l~~advI~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V 80 (236)
T TIGR01469 1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVSPEILAYAPPQAELIDVGKRPGCHSKKQEEINRLLVELAREGKKV 80 (236)
T ss_pred CEEEEecCCCChHHhHHHHHHHHHhCCEEEEeCCCCHHHHhhCCCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 58999999999999999999999999999998888888888887766666555443334456788888888888899999
Q ss_pred EEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHHhcC
Q 016852 208 VRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAAD 287 (381)
Q Consensus 208 vvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~l~~ 287 (381)
|+|++|||+||+++.++++.+.+.|+++++||||||+|+++|++|+||+.++.+.++.+++.|+++...... .++.+.+
T Consensus 81 ~~l~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~ 159 (236)
T TIGR01469 81 VRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDKALEV-DWEALAK 159 (236)
T ss_pred EEEeCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCCcceEEEEEcccCCCccccc-CHHHHhc
Confidence 999999999999999999999988999999999999999999999999988876678899999876431110 1345556
Q ss_pred CCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccccC
Q 016852 288 PDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLS 364 (381)
Q Consensus 288 ~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~~~ 364 (381)
..+++|+|+..+++.++++.|.+.|+++++++++++++|+++|+++.++++++.+.+...+++.+++++||++++++
T Consensus 160 ~~~~~vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~~~E~i~~~~l~el~~~~~~~~~~~~~vvivg~~~~~~ 236 (236)
T TIGR01469 160 GAGTLVIYMGVRNLPEIAKELIEHGRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKSPALIVIGEVVALR 236 (236)
T ss_pred CCCeEEEECCHHHHHHHHHHHHHcCCCCCCcEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEEcceeccC
Confidence 66799999999999999999999999888999999999999999999999999987766678999999999988764
No 7
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=100.00 E-value=3e-41 Score=322.77 Aligned_cols=241 Identities=29% Similarity=0.486 Sum_probs=205.9
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEc-CCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHc
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYD-RLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEV 203 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~-~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~ 203 (381)
.+++|++||+|||++++||++|+++|++||+|+++ +.....++++++++++.+.. ....++++.+.|.+.+++
T Consensus 6 ~~~~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~i~~~i~~~~~~ 79 (257)
T PRK15473 6 DPRCVWFVGAGPGDKELITLKGYRLLQQAQVVIYAGSLINTELLDYCPAQAECHDS------AELHLEQIIDLMEAGVKA 79 (257)
T ss_pred CCCEEEEEEeCCCChHHhhHHHHHHHHhCCEEEEecccCCHHHHhhcCCCCEEEec------CCCCHHHHHHHHHHHHHC
Confidence 35999999999999999999999999999999996 45566678888766554321 234678999999998889
Q ss_pred CCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHH
Q 016852 204 GATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAE 283 (381)
Q Consensus 204 Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~ 283 (381)
|++||+|++|||+|||++.++++.+.+.+++++|||||||+++++|++|+||+.++...++.+++.||+...... ..+.
T Consensus 80 g~~Vv~L~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~v~s~hG~~~~~~~-~~l~ 158 (257)
T PRK15473 80 GKTVVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLIITRMEGRTPVPAR-EQLE 158 (257)
T ss_pred CCeEEEEeCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHHcCCCcccccccccEEEEeecCCCCCCch-hhHH
Confidence 999999999999999999999999999999999999999999999999999997666667888999998653221 2244
Q ss_pred HhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccc-
Q 016852 284 NAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVS- 362 (381)
Q Consensus 284 ~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~- 362 (381)
.+...+.++|||+...++.++++.|.+.|+++++++++++++|+++|+++.++++++.+.+.......|+++|||+.+.
T Consensus 159 ~~~~~~~t~vi~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~~l~~~~~~~~~~~~~~ivvG~~~~~ 238 (257)
T PRK15473 159 SFASHQTSMAIFLSVQRIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIAEKVRDAGIRKTALILVGNFLGE 238 (257)
T ss_pred HHhcCCCeEEEECCchhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEEchhccC
Confidence 5666677999999999999999999999998889999999999999999999999999988777788999999999874
Q ss_pred ---cCCCCccchh
Q 016852 363 ---LSPFWPISSK 372 (381)
Q Consensus 363 ---~~~~~~~~~~ 372 (381)
.+.+|.++-|
T Consensus 239 ~~~~~~~~~~~~~ 251 (257)
T PRK15473 239 EYHYSKLYDADFS 251 (257)
T ss_pred CCCcccccCCCcc
Confidence 2456665544
No 8
>PRK10637 cysG siroheme synthase; Provisional
Probab=100.00 E-value=4.1e-41 Score=345.86 Aligned_cols=284 Identities=45% Similarity=0.722 Sum_probs=234.5
Q ss_pred CCCCCcccccccccccccccCHHH-HHHHHHHHHHhhhhc---------------------cc-----CC----------
Q 016852 79 PTSPSVSLDADSTRRNDIALQLPE-LKKLLQVLREKREED---------------------RV-----GA---------- 121 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~e-l~~~l~~~~~~~~~~---------------------~~-----~~---------- 121 (381)
||.|+.|..+..|| +++...+++ ...+++.+...|+.- .. .+
T Consensus 127 sT~G~sP~~a~~lr-~~ie~~~~~~~~~~~~~~~~~R~~~k~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (457)
T PRK10637 127 SSGGTSPVLARLLR-EKLESLLPQHLGQVAKYAGQLRGRVKQQFATMGERRRFWEKLFVNDRLAQSLANNDQKAVTETTE 205 (457)
T ss_pred ECCCCCcHHHHHHH-HHHHHhcchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccchhHHHHhccchHHHHHHHH
Confidence 89999999999999 666666653 555544433222210 00 00
Q ss_pred -----CCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHH
Q 016852 122 -----EKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHEL 196 (381)
Q Consensus 122 -----~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~ 196 (381)
....+|+||+||+||||+++||++|+++|++||+|+++.++.+.+++++..+++.+..++...++...++++.+.
T Consensus 206 ~~~~~~~~~~g~l~iVG~GpGdp~lLTl~A~~~L~~ADvV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (457)
T PRK10637 206 QLFSEPLDHRGEVVLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQI 285 (457)
T ss_pred hhcccCCCCCcEEEEEEeCCCChHHHHHHHHHHHHcCCEEEECCCCCHHHHhhcccCCEEEEcCCCCCCCCcCHHHHHHH
Confidence 113469999999999999999999999999999999999988888877776666665554444555678899899
Q ss_pred HHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCC
Q 016852 197 LLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGT 276 (381)
Q Consensus 197 i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~ 276 (381)
+.+++.+|++||+|++|||+|||++.++++.+.+.|++++|||||||+++++|++|+||+.++.+.++.++++|++....
T Consensus 286 i~~~~~~G~~Vv~L~sGDP~~yg~~~~l~~~l~~~gi~vevVPGISS~~aAaA~~g~pl~~~~~~~~~~vis~h~~~~~~ 365 (457)
T PRK10637 286 LLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGE 365 (457)
T ss_pred HHHHHhCCCEEEEEeCCCccccccHHHHHHHHHhCCCCEEEECCHhHHHHHHHHcCCCcccCCceeeEEEEeCccCCCCc
Confidence 99999999999999999999999999999999988999999999999999999999999998887889999999875432
Q ss_pred ChHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEE
Q 016852 277 DPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLII 356 (381)
Q Consensus 277 ~~~~l~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~vii 356 (381)
.. +..+....+|+|+||+.+++.+|++.|.+.|+.+++++++++++|+++|+++.++++++.+.. .++..|++|+
T Consensus 366 ~~---~~~l~~~~~t~Vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~el~~~~--~~~~~~~vii 440 (457)
T PRK10637 366 LD---WENLAAEKQTLVFYMGLNQAATIQQKLIEHGMPADMPVALVENGTSVTQRVVSGTLTQLGELA--QQVNSPSLII 440 (457)
T ss_pred cC---HHHHhCCCCeEEEECCHhhHHHHHHHHHhcCCCCCCcEEEEEeCCCCCcEEEEEEHHHHHHHH--hcCCCCEEEE
Confidence 11 234556778999999999999999999999998889999999999999999999999998753 2578999999
Q ss_pred EcCccccCCCCc
Q 016852 357 IGKVVSLSPFWP 368 (381)
Q Consensus 357 Ig~~~~~~~~~~ 368 (381)
||+.+..++.|+
T Consensus 441 ig~~~~~~~~~~ 452 (457)
T PRK10637 441 VGRVVGLRDKLN 452 (457)
T ss_pred EChhhchhhhhh
Confidence 999998777665
No 9
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=100.00 E-value=7.7e-41 Score=307.16 Aligned_cols=234 Identities=34% Similarity=0.608 Sum_probs=211.1
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEE-cCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcC
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVG 204 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~-~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~G 204 (381)
..+||+||.||||||+||+|++++|++||+|+| +..+.+++++.++++++++.- ...+.+||.+.+.+..++|
T Consensus 2 ~~~VyFIGAGPGdpdLiTvkg~~ll~~advviYAGSLV~~elL~~~~~~aei~nS------a~~tLeeIi~~m~~a~~~G 75 (254)
T COG2875 2 AMKVYFIGAGPGDPDLITVKGQRLLEKADVVIYAGSLVPPELLEYCRPDAEIVNS------ASLTLEEIIDLMVDAVREG 75 (254)
T ss_pred CceEEEEccCCCCcceeeehHHHHHhhCCEEEECCCcCCHHHHhhcCCCCEEEec------CcCCHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999998 678899999999999998742 3468899999999999999
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHH
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAEN 284 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~ 284 (381)
|+||+|.+|||.+||...+-++.|++.||+++|+||||||.++||.+|+.++-.+.++++.+.-.-||..-.. .+.+..
T Consensus 76 k~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe-~e~l~~ 154 (254)
T COG2875 76 KDVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPE-KESLAA 154 (254)
T ss_pred CeEEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCCc-hhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998886655556643222 223455
Q ss_pred hcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccccC
Q 016852 285 AADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLS 364 (381)
Q Consensus 285 l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~~~ 364 (381)
++.++.|++||.+.+.+.++.+.|++-||++||||+|+.+.+||||+++.|||+|+.++.++.+....++++||+.+...
T Consensus 155 la~~~aTm~I~L~v~~I~~vv~~L~~g~y~~dtPVaVV~rAsWpDe~ii~GTL~dIa~kv~~~~i~rTAlIiVG~~l~~~ 234 (254)
T COG2875 155 LAKHGATMVIFLGVHAIDKVVEELLEGGYPPDTPVAVVYRASWPDEKIIRGTLEDIAEKVKEAGIRRTALIIVGDVLDPE 234 (254)
T ss_pred HHhcCceeEeeehhhHHHHHHHHHhcCCCCCCCCEEEEEecCCCcccEEEeeHHHHHHHHHhcCceeEEEEEEccccCcC
Confidence 67788999999999999999999999889999999999999999999999999999999999999999999999998754
Q ss_pred CC
Q 016852 365 PF 366 (381)
Q Consensus 365 ~~ 366 (381)
.+
T Consensus 235 ~~ 236 (254)
T COG2875 235 GF 236 (254)
T ss_pred cc
Confidence 44
No 10
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=100.00 E-value=3.2e-40 Score=309.41 Aligned_cols=227 Identities=33% Similarity=0.545 Sum_probs=196.2
Q ss_pred EEEEecCCCCcccchHHHHHHHHhcCEEEEc-CCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeE
Q 016852 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYD-RLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATV 207 (381)
Q Consensus 129 l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~-~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~V 207 (381)
||+||+||||+++||++|+++|++||+|+++ +.....+++.+.++.+++.. ....++++.+.+.+++++|++|
T Consensus 1 v~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~g~~V 74 (229)
T TIGR01465 1 VYFIGAGPGDPDLITVKGRKLLESADVILYAGSLVPPELLAWCRPGAEVVNS------AGMSLEEIVDIMSDAHREGKLV 74 (229)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhCCCCCEEEEc------CCCCHHHHHHHHHHHHHCCCeE
Confidence 6899999999999999999999999999995 45666677777766665532 2245788899998888899999
Q ss_pred EEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHHhcC
Q 016852 208 VRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAAD 287 (381)
Q Consensus 208 vvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~l~~ 287 (381)
|+|++|||+|||++.++++.+++.|++++|||||||+++++|++|+||+.++.+.++.+.+.||+..... ...+..+..
T Consensus 75 ~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g~~~~~~-~~~l~~~~~ 153 (229)
T TIGR01465 75 VRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRTPMPE-GEKLADLAK 153 (229)
T ss_pred EEEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEEeccCCCCCCC-hHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999988877888889998753221 122344556
Q ss_pred CCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccc
Q 016852 288 PDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVS 362 (381)
Q Consensus 288 ~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~ 362 (381)
.+.++++|++.+++.++++.|.+.|+++++++++++++|+++|+|+.++++++.+...+.+.+.|+++|||+++.
T Consensus 154 ~~~~~vi~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~~~~ivvg~~~~ 228 (229)
T TIGR01465 154 HGATMAIFLSAHILDKVVKELIEGGYSEDTPVAVVYRATWPDEKIVRGTLADLADLVREEGIYRTTLILVGPALD 228 (229)
T ss_pred CCCeEEEECcHHHHHHHHHHHHHcCcCCCCcEEEEEeCCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEECcccC
Confidence 667999999999999999999999998889999999999999999999999999877666778999999999764
No 11
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=100.00 E-value=7.3e-36 Score=285.69 Aligned_cols=223 Identities=22% Similarity=0.266 Sum_probs=175.5
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCH-------HHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHH
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSN-------DVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSF 200 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~-------~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~ 200 (381)
+||+||+||||+++||+||+++|++||+|+++.++.. .+..++. ++..... ....++..+.+.+.
T Consensus 1 ~l~~VG~GPGd~~llTl~a~~~L~~advV~~~~~~s~l~~~~~~~~~~~~~--~~~~~~~------~~~~e~~~~~ii~~ 72 (257)
T TIGR00522 1 MLYLIGLGLYDENDISVKGLEAIKKADEVYAEFYTSKLLGSSIEEIEEFFG--KRVVVLE------RSDVEENSFRLIER 72 (257)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEeccchhhccccHHHHHHHhC--CcccccC------HHHHHHHHHHHHHH
Confidence 5899999999999999999999999999998854431 1112221 1211111 01223445667777
Q ss_pred HHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHH
Q 016852 201 AEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLF 280 (381)
Q Consensus 201 ~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~ 280 (381)
++ +++||+|++|||++|+++.+++..+++.|++++|||||||++++++.+|+|+++++.+.++.+++.|++..... ..
T Consensus 73 ~~-~~~Vv~l~~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~~aaaa~~g~~lt~~g~~~~v~~~s~~~~~~~~~-~~ 150 (257)
T TIGR00522 73 AK-SKDVALLVAGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVCGLTGLQLYKFGKTATIVFFTDNYRPQTPY-NV 150 (257)
T ss_pred hc-CCCEEEEECCcCcccCCHHHHHHHHHHCCCeEEEECcHhHHHHHHHHcCCCcccCCCcEEEEEecCCcCCCCHH-HH
Confidence 64 48999999999999999999999999999999999999999999999999999999999999999999864321 12
Q ss_pred HHHHhcCCCCcEEEEcCCC-------------CHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccC
Q 016852 281 VAENAADPDSTLVVYMGLS-------------TLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVE 347 (381)
Q Consensus 281 l~~~l~~~~~tlVIl~~~~-------------~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~ 347 (381)
.++++....+|+|||+... .+.++.+.|.+.|+++++++++++|+|+++|++..+|++++.+. ..
T Consensus 151 ~~~~l~~~~~Tlvll~~~~~~~~~M~~~~~~~~l~~~~~~l~~~g~~~~tpv~vv~~~~~~de~i~~gtl~~l~~~--~~ 228 (257)
T TIGR00522 151 IKENRKIGLHTLVLLDIHPKENRAMTIGEGLENLLEEEEKRKTGAITPDTYAVVIARAGSGKPVVKCDKIENLKNY--DF 228 (257)
T ss_pred HHHHHhcCCCcEEEEecccCcccccCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEEECCCCCceEEEEEHHHHHhc--cc
Confidence 4566667778999984332 34446667777899999999999999999999999999999885 33
Q ss_pred CCCCcEEEEEcCccc
Q 016852 348 ELVSPTLIIIGKVVS 362 (381)
Q Consensus 348 ~~~~~~viiIg~~~~ 362 (381)
+...+++||+|++++
T Consensus 229 ~~~~~alii~g~~l~ 243 (257)
T TIGR00522 229 GEPLHCLVVLAKTLH 243 (257)
T ss_pred CCCCeEEEEeCCCCC
Confidence 445569999998654
No 12
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=100.00 E-value=1.2e-35 Score=274.88 Aligned_cols=209 Identities=29% Similarity=0.369 Sum_probs=164.0
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeE
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATV 207 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~V 207 (381)
+||+||+||||+++||++|+++|++||+|+++.+..+.+..+++.+.+++.. ..+++.+.+. ...+|++|
T Consensus 1 ~l~vVG~GpG~~~~lT~~a~~~l~~advv~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~-~~~~g~~V 70 (210)
T PRK05787 1 MIYIVGIGPGDPEYLTLKALEAIRKADVVVGSKRVLELFPELIDGEAFVLTA---------GLRDLLEWLE-LAAKGKNV 70 (210)
T ss_pred CEEEEEeCCCChHHhhHHHHHHHHhCCEEEEcHhHHHHHHHhccCccEEecC---------CHHHHHHHHH-HhhCCCcE
Confidence 5899999999999999999999999999999877655444444333443322 2355666665 56689999
Q ss_pred EEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHHhcC
Q 016852 208 VRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAAD 287 (381)
Q Consensus 208 vvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~l~~ 287 (381)
|+|++|||+|||.+..+.+.+. .++++++||||||+++++|++|+||++ +.+++.|+++... ..+...+..
T Consensus 71 ~~l~~GDP~~~~~~~~~~~~~~-~~~~veviPGiSs~~aaaa~~g~~l~~------~~~is~~~~~~~~--~~l~~~~~~ 141 (210)
T PRK05787 71 VVLSTGDPLFSGLGKLLKVRRA-VAEDVEVIPGISSVQYAAARLGIDMND------VVFTTSHGRGPNF--EELEDLLKN 141 (210)
T ss_pred EEEecCCccccccHHHHHHHhc-cCCCeEEEcCHHHHHHHHHHhCCCHHH------cEEEeecCCCcch--HHHHHHHHc
Confidence 9999999999997776666543 348999999999999999999999994 6789999986432 122223323
Q ss_pred CCCcEEEEc-CCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCcc
Q 016852 288 PDSTLVVYM-GLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVV 361 (381)
Q Consensus 288 ~~~tlVIl~-~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~ 361 (381)
+.+++++. ...++.++++.|.+.| ..++++++++++|+++|+|..++++++... ++..+++++|.+++
T Consensus 142 -~~~~v~l~~~~~~~~~i~~~L~~~g-~~~~~~~v~~~l~~~~E~i~~~~l~~~~~~----~~~~~s~v~v~~~~ 210 (210)
T PRK05787 142 -GRKVIMLPDPRFGPKEIAAELLERG-KLERRIVVGENLSYPDERIHKLTLSEIEPL----EFSDMSVVVILDER 210 (210)
T ss_pred -CCeEEEEcCCCCCHHHHHHHHHhCC-CCCcEEEEEEeCCCCCeEEEeCCHHHHhhc----ccCCcEEEEEecCC
Confidence 44556655 4468999999999988 567899999999999999999999988653 68899999999874
No 13
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=100.00 E-value=8.1e-35 Score=276.01 Aligned_cols=219 Identities=21% Similarity=0.364 Sum_probs=169.1
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeE
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATV 207 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~V 207 (381)
+||+||+||||+++||+||+++|++||+|+++.+.. .++..+.++++++..+. ....+..+.+.+.+++|++|
T Consensus 1 ml~~VG~GPGdp~lLTlrA~~~L~~ADvVv~~~~~~-~lv~~~~~~~~~i~~~~------~~~~~~~~~~i~~~~~g~~V 73 (241)
T PRK15478 1 MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKTYT-HLVKAFTGDKQVIKTGM------CKEIERCQAAIELAQAGHNV 73 (241)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHcCCEEEEcCcHH-HHHHhhcCCCEEEECCC------chHHHHHHHHHHHHHCCCeE
Confidence 489999999999999999999999999999876653 34444445666665431 12345556677888899999
Q ss_pred EEEecCCCCCcCCHHHHHHHHHhCC--CcEEEEcCchHHHHHHHhcCCCCccCcccceeE-EecCCCCCCCCChHHHHHH
Q 016852 208 VRLKGGDPLVFGRGGEEMDFLQQKG--IQVKVIPGITAASGIAAELGIPLTHRGVANSVR-FLTGHSRKGGTDPLFVAEN 284 (381)
Q Consensus 208 vvL~sGDP~~ys~~~~l~~~l~~~g--i~veVIPGISS~~aaaA~lGipl~~~~~~~~v~-ivs~hgr~~~~~~~~l~~~ 284 (381)
|+|++|||++||.+.++++.+.+.+ ++++|||||||+++++|++|+||+++....++. +.+.|.. ....+..
T Consensus 74 v~L~sGDP~~~g~~~~~~~~l~~~~~~~~veviPGiSs~~aaaa~~g~plt~~~~~~s~~~~~~~~~~-----~~~~~~a 148 (241)
T PRK15478 74 ALISSGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPLMHDFCHISLSDLLTPWPV-----IEKRIVA 148 (241)
T ss_pred EEEECCCCCcchhHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHhCCCcccCcceeecccCCCCcHH-----HHHhHHH
Confidence 9999999999999999999887765 669999999999999999999998654322221 1111110 0011233
Q ss_pred hcCCCCcEEEEcCCCC--HHHHHH--HHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCc
Q 016852 285 AADPDSTLVVYMGLST--LPSLAL--KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKV 360 (381)
Q Consensus 285 l~~~~~tlVIl~~~~~--~~~Ia~--~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~ 360 (381)
+...+.|++|||+.++ ...+.+ .|+..|+++++|+++++++|+++|+++.+||+++.. .....|+++|||+.
T Consensus 149 ~~~~~~tlvlym~~~~~~~~~l~~~~~ll~~g~~~~tPvaiv~~~t~~~q~~~~~tL~~l~~----~~~~~~~liivG~~ 224 (241)
T PRK15478 149 AGEADFVICFYNPRSRGREGHLARAFDLLAASKSAQTPVGVVKSAGRKKEEKWLTTLGDMDF----EPVDMTSLVIVGNK 224 (241)
T ss_pred HhcCCeEEEEECCcccccHHHHHHHHHHHHccCCCCCEEEEEEeCCCCCeEEEEEEHHHhhh----cCCCCceEEEECCe
Confidence 4566789999999975 445533 666778999999999999999999999999999986 36789999999997
Q ss_pred cc
Q 016852 361 VS 362 (381)
Q Consensus 361 ~~ 362 (381)
..
T Consensus 225 ~t 226 (241)
T PRK15478 225 TT 226 (241)
T ss_pred ee
Confidence 63
No 14
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=100.00 E-value=6.2e-36 Score=275.59 Aligned_cols=201 Identities=37% Similarity=0.553 Sum_probs=162.7
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCC----CceEEEeccccCCCCCCHHHHHHHH--HHHH
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAP----NARLLYVGKTAGYHSRTQEEIHELL--LSFA 201 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~----~~e~i~~~~~~~~~~~~~eei~~~i--~~~~ 201 (381)
|||+||+||||+++||++|+++|++||+|+++.+..+.+.++++. ...... ....++++.+.+ .+.+
T Consensus 1 ~l~iVG~GpG~~~~lT~~a~~~l~~advv~~~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~ 73 (210)
T PF00590_consen 1 KLYIVGLGPGDPDLLTLRALEALKNADVVIGPERALEIVRDLLPEIFPMGKDRES-------LEESYDEIAEIIEAIEAA 73 (210)
T ss_dssp EEEEEEEBSSSGGGSBHHHHHHHHHSSEEEEETTCHHHHHHHHHTEETTSSEEEE-------EHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhCCcccccccchHHHHhhccccccccccccc-------hhhhhhHHHHHHHHHHHH
Confidence 799999999999999999999999999999988876666666532 111111 112467888888 8889
Q ss_pred HcCCeEEEEecCCCCCcCCHHHHHHHHHh--CCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCC-CCCCCCh
Q 016852 202 EVGATVVRLKGGDPLVFGRGGEEMDFLQQ--KGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHS-RKGGTDP 278 (381)
Q Consensus 202 ~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~--~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hg-r~~~~~~ 278 (381)
++|++|++|++|||+||+++.++++.+.+ .|+++++||||||+++++|++|+||++.+. ++.|+ +......
T Consensus 74 ~~g~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g~~~~~~~~------~~~~~~~~~~~~~ 147 (210)
T PF00590_consen 74 KEGKDVVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLGIPLTDGGF------ISLHGLRDLDTER 147 (210)
T ss_dssp HTTSEEEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCTSTSSBTTT------BEEEETSSSSHHH
T ss_pred hccCCEEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHcCCcccCcE------EEEEEecccccch
Confidence 99999999999999999999999999998 899999999999999999999999997654 33444 3221112
Q ss_pred HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHH
Q 016852 279 LFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLA 341 (381)
Q Consensus 279 ~~l~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~ 341 (381)
...+..+.....++++|+.+.++.++++.|++..++.++++++++++|+++|+|++++++|++
T Consensus 148 ~~~l~~~~~~~~~~vil~~~~~~~~i~~~L~~~~~~~~~~v~v~~~lg~~~E~i~~~tl~ela 210 (210)
T PF00590_consen 148 EKLLENLLANGDTLVILTDPRRLAEIAELLLERLYPPDTPVAVGERLGYPDERIFRGTLEELA 210 (210)
T ss_dssp HHHHHHHHTTTSEEEEEESGCCHHHHHHHHHHHSHTTTSEEEEEESTTSTTEEEEEEEHHHHH
T ss_pred HHHHHHHHhCCCEEEEEccCchHHHHHHHHHhhCCCCCcEEEHHHhcCCCCCEEEEeEHHHcC
Confidence 234555666688999999988999999999987224568999999999999999999999984
No 15
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=100.00 E-value=9.5e-35 Score=274.85 Aligned_cols=221 Identities=26% Similarity=0.320 Sum_probs=170.3
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCC------CH-HHHhhhCCCceEEEeccccCCC----CCCHHHH
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLV------SN-DVLDLVAPNARLLYVGKTAGYH----SRTQEEI 193 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~------~~-~ll~~l~~~~e~i~~~~~~~~~----~~~~eei 193 (381)
.+|+||+||+|||||++||+||+++|++||+|+++... .. .+.+++.++.+++.+.+.+... ...+++.
T Consensus 2 ~~g~ly~VGvGPGdp~LlTlkA~~~L~~advi~~p~~~~~~~s~a~~i~~~~~~~~~~~~~l~fpm~~~~~~~~~~~~~~ 81 (238)
T PRK05948 2 TLGTLYGISVGPGDPELITLKGLRLLQSAPVVAFPAGLAGQPGLAEQIIAPWLSPQQIKLPLYFPYVQDEEQLEQAWQAA 81 (238)
T ss_pred CCCEEEEEEecCCChHHhHHHHHHHHhhCCEEEEeCCCCCchhHHHHHHHHHcCCCcEEEEecCCccCChHHHHHHHHHH
Confidence 46999999999999999999999999999999987533 11 2334556566666543333221 1234567
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhC--CCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCC
Q 016852 194 HELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQK--GIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHS 271 (381)
Q Consensus 194 ~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~--gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hg 271 (381)
++.+.+.+++|++||+|+.|||+|||++.++++.+++. |++++|||||||+++++|++|+||++++. .+.++++|.
T Consensus 82 ~~~i~~~~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIss~~a~aa~~g~pL~~~~e--~l~ii~~~~ 159 (238)
T PRK05948 82 ADQVWHYLEQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVCSPLAAAAALGIPLTLGSQ--RLAILPALY 159 (238)
T ss_pred HHHHHHHHHcCCeEEEEeCCChHHHHHHHHHHHHHHhcCCCCCEEEECChhHHHHHHHHhCCCeecCCC--eEEEEcCCC
Confidence 78888899999999999999999999999999998873 89999999999999999999999998875 577899986
Q ss_pred CCCCCChHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCC
Q 016852 272 RKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVS 351 (381)
Q Consensus 272 r~~~~~~~~l~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~ 351 (381)
+.. .+ +...+...++|++......+++.+.|.+.|+.++ +++++++|+++|+++. ++.++.. ...++
T Consensus 160 ~~~-----~l-~~~l~~~~~vVlmk~~~~~~~i~~~L~~~g~~~~--~~vv~~~~~~~E~i~~-~l~~~~~----~~~~Y 226 (238)
T PRK05948 160 HLE-----EL-EQALTWADVVVLMKVSSVYPQVWQWLKARNLLEQ--ASLVERATTPEQVIYR-NLEDYPD----LRLPY 226 (238)
T ss_pred CHH-----HH-HHHHhCCCEEEEEECCccHHHHHHHHHhCCCCCC--EEEEEECCCCCcEEEe-ehhhcCc----CCCCc
Confidence 431 12 2233333454444434457999999999988764 7899999999999876 6666543 25678
Q ss_pred cEEEEEcCc
Q 016852 352 PTLIIIGKV 360 (381)
Q Consensus 352 ~~viiIg~~ 360 (381)
.++++|.+.
T Consensus 227 ~S~iiv~~~ 235 (238)
T PRK05948 227 FSLLIIQKR 235 (238)
T ss_pred eEEEEEcCC
Confidence 999999874
No 16
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=100.00 E-value=1.3e-34 Score=275.45 Aligned_cols=222 Identities=25% Similarity=0.391 Sum_probs=169.7
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHH-HHHHHHHHHHHcCC
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQE-EIHELLLSFAEVGA 205 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~e-ei~~~i~~~~~~Gk 205 (381)
|+||+||+||||+++||++|+++|++||+|+++.+..+.+.++ ..+++++... ...+ ...+.+.+.+++|+
T Consensus 2 g~v~iVG~GpGdp~~lT~ra~~~L~~AdvV~~~~~~~~~v~~~-~~~~~~~~~~-------~~~~~~~~~~~i~~~~~g~ 73 (246)
T PRK05765 2 GKLYIVGIGPGSKEQRTIKAQEAIEKSNVIIGYNTYLRLISDL-LDGKEVIGAR-------MKEEIFRANTAIEKALEGN 73 (246)
T ss_pred CEEEEEEcCCCChHHhhHHHHHHHHhCCEEEEccCHHHHHHHh-cCCCEEecCC-------chHHHHHHHHHHHHHHCCC
Confidence 7899999999999999999999999999999977654433333 2344443211 1121 11345667778999
Q ss_pred eEEEEecCCCCCcCCHHHHHHHHHhCCC--cEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCCh-HHHH
Q 016852 206 TVVRLKGGDPLVFGRGGEEMDFLQQKGI--QVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDP-LFVA 282 (381)
Q Consensus 206 ~VvvL~sGDP~~ys~~~~l~~~l~~~gi--~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~-~~l~ 282 (381)
+||+|++|||++||++.++++.+.+.|+ +++|||||||+++++|++|+||+. ++.+++.|........ ...+
T Consensus 74 ~Vv~l~~GDP~i~~~~~~~~~~l~~~~~~~~veviPGiSs~~aa~a~~g~pl~~-----~~~~~s~~~~~~p~~~~~~~l 148 (246)
T PRK05765 74 IVALVSSGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSL-----DFVVISLSDLLIPREEILHRV 148 (246)
T ss_pred cEEEEeCCCchhhhhHHHHHHHHHhcCCCCCEEEeCCHHHHHHHHHHhCCCCcC-----CcEEEEcCCCCCChHHHHHHH
Confidence 9999999999999999999999988876 799999999999999999999964 3668898852211111 1112
Q ss_pred HHhcCCCCcEEEEcCCC--CHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCc
Q 016852 283 ENAADPDSTLVVYMGLS--TLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKV 360 (381)
Q Consensus 283 ~~l~~~~~tlVIl~~~~--~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~ 360 (381)
..+.....++++||+.. ...++.+. ++.|+++++++++++++|+++|+++.+||+++.+... +...+++||||++
T Consensus 149 ~~~~~~~~~ivly~~~~~~~~~~~~~~-l~~~~~~~~pv~vv~~~t~~~E~i~~~tL~~l~~~~~--~~~~~~~iiVg~~ 225 (246)
T PRK05765 149 TKAAEADFVIVFYNPINENLLIEVMDI-VSKHRKPNTPVGLVKSAYRNNENVVITTLSSWKEHMD--EIGMTTTMIIGNS 225 (246)
T ss_pred HHHhcCCeEEEEEcccchhHHHHHHHH-HHhcCCCCCEEEEEEeCCCCCeEEEEEEHHHhhhhhh--cCCCceEEEECCc
Confidence 33456678889999743 45566654 4557999999999999999999999999999976543 4678999999998
Q ss_pred cccC
Q 016852 361 VSLS 364 (381)
Q Consensus 361 ~~~~ 364 (381)
....
T Consensus 226 ~~~~ 229 (246)
T PRK05765 226 LTYS 229 (246)
T ss_pred ccEE
Confidence 7543
No 17
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=100.00 E-value=4.4e-34 Score=269.95 Aligned_cols=218 Identities=28% Similarity=0.434 Sum_probs=168.1
Q ss_pred EEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEE
Q 016852 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVV 208 (381)
Q Consensus 129 l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~Vv 208 (381)
||+||+|||++++||++|+++|++||+|+++.+..+.+..+. ++++++... .....+..+.+.+.+++|++||
T Consensus 1 l~iVG~GpG~~~~lT~~A~~~i~~AdvV~~~~~~~~~v~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~Vv 73 (239)
T TIGR01466 1 LYVVGIGPGAEELMTPEAKEALAEADVIVGYKTYLDLIEDLI-PGKEVVTSG------MREEIARAELAIELAAEGRTVA 73 (239)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHhCCEEEECccHHHHHHhhC-CCCEEEeCC------ChHHHHHHHHHHHHHhCCCCEE
Confidence 689999999999999999999999999999877544333332 344444322 1122233445556667899999
Q ss_pred EEecCCCCCcCCHHHHHHHHHhCC--CcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHH-HHHHh
Q 016852 209 RLKGGDPLVFGRGGEEMDFLQQKG--IQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLF-VAENA 285 (381)
Q Consensus 209 vL~sGDP~~ys~~~~l~~~l~~~g--i~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~-l~~~l 285 (381)
+|++|||+|||.+.++++.+++.+ ++++++|||||+++++|++|+||++ ++.+++.|++........ .+..+
T Consensus 74 ~l~~GDP~~~~~~~~l~~~l~~~~~~~~v~viPGiSS~~aa~a~~g~p~~~-----~~~~is~~~~~~~~~~~~~~l~~~ 148 (239)
T TIGR01466 74 LVSSGDPGIYGMAALVFEALEKKGAEVDIEVIPGITAASAAASLLGAPLGH-----DFCVISLSDLLTPWPEIEKRLRAA 148 (239)
T ss_pred EEecCCCcccccHHHHHHHHHhcCCCCCEEEeCCccHHHHHHHHcCCCccc-----ccEEEECCCCCCCchHHHHHHHHH
Confidence 999999999999999999998764 5999999999999999999999964 366899997532221111 12334
Q ss_pred cCCCCcEEEEcCCC-----CHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCc
Q 016852 286 ADPDSTLVVYMGLS-----TLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKV 360 (381)
Q Consensus 286 ~~~~~tlVIl~~~~-----~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~ 360 (381)
.+.+.++++|+... ++.++++.|.+.+ +.++++++++++|+++|++..++++++.+. ++..+++++|++.
T Consensus 149 ~~~~~~~vl~~~~~~~~~~~~~~i~~~L~~~~-~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~----~~~~~s~iii~~~ 223 (239)
T TIGR01466 149 AEADFVIAIYNPRSKRRPEQFRRAMEILLEHR-KPDTPVGIVRNAGREGEEVEITTLAELDEE----LIDMLTTVIIGNS 223 (239)
T ss_pred hCCCcEEEEECCcccchhhhHHHHHHHHHhcC-CCCCEEEEEEECCCCCeEEEEEEHHHHhhc----CCCCCeEEEECCc
Confidence 44566788887643 7888888898864 557899999999999999999999999763 6889999999998
Q ss_pred ccc
Q 016852 361 VSL 363 (381)
Q Consensus 361 ~~~ 363 (381)
..+
T Consensus 224 ~~~ 226 (239)
T TIGR01466 224 ETY 226 (239)
T ss_pred hhe
Confidence 754
No 18
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=100.00 E-value=8.1e-35 Score=268.38 Aligned_cols=205 Identities=27% Similarity=0.378 Sum_probs=163.0
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCC--CceEEEeccccCCCCCCHHHHHHHHHHHHHcCC
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAP--NARLLYVGKTAGYHSRTQEEIHELLLSFAEVGA 205 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~--~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk 205 (381)
+|++||+|||++++||.+|+++|++||+|+|.+++ ++.+++ +++...+... ...+..+.+.... +|+
T Consensus 1 ~I~vVGiGp~~~~~Lt~~A~~~I~~A~vV~G~kr~----L~~~~~~~~~~~~~~~~~------~~~~~l~~i~~~~-~g~ 69 (210)
T COG2241 1 MITVVGIGPGGPEGLTLAAIEAIRRADVVAGSKRH----LELLPPLIKAERIIWPYP------FDAESLEEILAER-KGR 69 (210)
T ss_pred CEEEEEeCCCChhhhcHHHHHHHHhCCEEeecHHH----HHhhhccccceEEEeccc------cchHHHHHHHHHh-CCC
Confidence 58999999999999999999999999999999885 555543 2334433211 1222233333332 389
Q ss_pred eEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHHh
Q 016852 206 TVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENA 285 (381)
Q Consensus 206 ~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~l 285 (381)
+||+|.+|||+|||-+..+.+.+... +++|||||||+|+|+|++|++|++ +.++|.|+|+. +.+..+
T Consensus 70 ~v~VLasGDP~f~G~g~~l~~~~~~~--~v~iIPgiSS~q~a~ARlg~~~~~------~~~islHgr~~-----~~l~~~ 136 (210)
T COG2241 70 DVVVLASGDPLFSGVGRLLRRKFSCE--EVEIIPGISSVQLAAARLGWPLQD------TEVISLHGRPV-----ELLRPL 136 (210)
T ss_pred CeEEEecCCcchhhhHHHHHHhcCcc--ceEEecChhHHHHHHHHhCCChHH------eEEEEecCCCH-----HHHHHH
Confidence 99999999999999988888777654 999999999999999999999994 88999998853 233333
Q ss_pred cCCCCcEEEEcCCC-CHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCcc
Q 016852 286 ADPDSTLVVYMGLS-TLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVV 361 (381)
Q Consensus 286 ~~~~~tlVIl~~~~-~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~ 361 (381)
...+..++++.+.. .+.+|++.|.+.|+. +++++|+||||+++|||..++++++... .+.+++|++|....
T Consensus 137 ~~~~~~~vil~~~~~~P~~IA~~L~~~G~~-~~~~~VlE~L~~~~Eri~~~~~~~~~~~----~fsdlnVv~v~~~~ 208 (210)
T COG2241 137 LENGRRLVILTPDDFGPAEIAKLLTENGIG-DSRVTVLENLGYPDERITDGTAEDIAAE----EFSDLNVVAVEKRA 208 (210)
T ss_pred HhCCceEEEeCCCCCCHHHHHHHHHhCCCC-CceEEEEcccCCCchhhhcCchhhhccc----ccCCceEEEEEccC
Confidence 44556666665553 699999999999998 6899999999999999999999999874 48899999998754
No 19
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=100.00 E-value=3.6e-34 Score=269.26 Aligned_cols=218 Identities=29% Similarity=0.430 Sum_probs=167.2
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCC------CHH-HHhhhCC-CceEEEe----ccccCCCCCCHHHHH
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLV------SND-VLDLVAP-NARLLYV----GKTAGYHSRTQEEIH 194 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~------~~~-ll~~l~~-~~e~i~~----~~~~~~~~~~~eei~ 194 (381)
|+||+||+||||+++||++|+++|++||+|+++... ... +.++.++ ..+++.. +.........++++.
T Consensus 1 ~~i~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (230)
T TIGR01467 1 GKLYGVGVGPGDPELITVKALEALRSADVIAVPASKKGRESLARKIVEDYLKPNDTRILELVFPMTKDRDELEKAWDEAA 80 (230)
T ss_pred CEEEEEEecCCCcHHHHHHHHHHHhhCCEEEEeCCCCCCcchHHHHHHHhcCccCceEEEEeccccCChHHHHHHHHHHH
Confidence 689999999999999999999999999999986532 112 2344433 2343321 111111113355777
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCC
Q 016852 195 ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKG 274 (381)
Q Consensus 195 ~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~ 274 (381)
+.+.+.+++|++||+|++|||+||+++.++++.+.+.|++++|||||||+++++|++|+||++++. .+.+++.|++.
T Consensus 81 ~~i~~~~~~g~~Vv~l~~GDP~~y~~~~~l~~~~~~~~~~veviPGiSs~~~a~a~~g~~l~~~~~--~~~~~~~~~~~- 157 (230)
T TIGR01467 81 EAVAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDE--SLAILPATAGE- 157 (230)
T ss_pred HHHHHHHHCCCcEEEEeCCCCCcccCHHHHHHHHHHCCCcEEEeCChhHHHHHHHHhCCCcccCCc--eEEEEeCCCCH-
Confidence 778888889999999999999999999999999988899999999999999999999999998654 34567777432
Q ss_pred CCChHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEE
Q 016852 275 GTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTL 354 (381)
Q Consensus 275 ~~~~~~l~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~v 354 (381)
..+. .......++|||+...++.++++.|.+.|+. .++++++++|+|+|++..+ +.++.. .++++.++
T Consensus 158 ----~~~~-~~~~~~~~vvil~~~~~~~~i~~~L~~~g~~--~~v~v~e~l~~~~E~i~~~-~~~~~~----~~~~y~s~ 225 (230)
T TIGR01467 158 ----AELE-KALAEFDTVVLMKVGRNLPQIKEALAKLGRL--DAAVVVERATMPDEKIVDL-VREAID----DALPYFST 225 (230)
T ss_pred ----HHHH-HHhccCCeEEEEecCCCHHHHHHHHHHcCCc--ccEEEEEECCCCCcEEEcc-ccccCC----CCCCeeEE
Confidence 1122 3334567899999988999999999998874 3699999999999999876 666632 36788899
Q ss_pred EEEcC
Q 016852 355 IIIGK 359 (381)
Q Consensus 355 iiIg~ 359 (381)
+++.+
T Consensus 226 ~i~~~ 230 (230)
T TIGR01467 226 ILVRR 230 (230)
T ss_pred EEecC
Confidence 98863
No 20
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=100.00 E-value=5.6e-34 Score=268.07 Aligned_cols=215 Identities=22% Similarity=0.318 Sum_probs=166.6
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcC------CCCH-HHHhhhCCCceEEEeccccCCC----CCCHHHHH
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDR------LVSN-DVLDLVAPNARLLYVGKTAGYH----SRTQEEIH 194 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~------~~~~-~ll~~l~~~~e~i~~~~~~~~~----~~~~eei~ 194 (381)
||+||+||+|||++++||++|+++|++||+|++++ +... .+..+++++++++.+...+... ...++++.
T Consensus 1 m~~l~vVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (229)
T PRK05576 1 MGKLYGIGLGPGDPELLTVKAARILEEADVVYAPASRKGGGSLALNIVRPYLKEETEIVELHFPMSKDEEEKEAVWKENA 80 (229)
T ss_pred CCEEEEEEeCCCChHHHHHHHHHHHhcCCEEEEECCCCCchhHHHHHHHHhcCCCCEEEEeeCCCCCChHHHHHHHHHHH
Confidence 47999999999999999999999999999999972 2212 2333444444544432111111 12345777
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCC
Q 016852 195 ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKG 274 (381)
Q Consensus 195 ~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~ 274 (381)
+.+.+.+.+|++||+|++|||+|||++.++++.+++.|++++|||||||+++++|++|+||+.++. ++.+++.|+ .
T Consensus 81 ~~i~~~~~~g~~V~~l~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~--~~~iis~~~-~- 156 (229)
T PRK05576 81 EEIAAEAEEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDE--SLAIIPATR-E- 156 (229)
T ss_pred HHHHHHHHcCCcEEEEeCcCccccccHHHHHHHHHhCCCCEEEeCChhHHHHHHHHcCCCcccCCc--eEEEEECCC-H-
Confidence 888888889999999999999999999999999988899999999999999999999999997654 477899885 1
Q ss_pred CCChHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEE
Q 016852 275 GTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTL 354 (381)
Q Consensus 275 ~~~~~~l~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~v 354 (381)
..+...+ ....++||+...+.+..+.+.|.+.|+ ++++++++|+|+|+|+.+++.++. +++..++
T Consensus 157 ----~~l~~~l-~~~~~~vl~~~~~~~~~i~~~l~~~~~----~v~v~e~l~~~~E~i~~~~~~~~~------~~~y~s~ 221 (229)
T PRK05576 157 ----ALIEQAL-TDFDSVVLMKVYKNFALIEELLEEGYL----DALYVRRAYMEGEQILRRLEEILD------DLDYFST 221 (229)
T ss_pred ----HHHHHHh-hcCCEEEEEecCCCHHHHHHHHHhcCC----CEEEEEECCCCCeEEEccccccCC------CCCeeEE
Confidence 1122333 455788888877788888888876543 699999999999999988877752 3678889
Q ss_pred EEEcC
Q 016852 355 IIIGK 359 (381)
Q Consensus 355 iiIg~ 359 (381)
|++.+
T Consensus 222 ii~~~ 226 (229)
T PRK05576 222 IIANR 226 (229)
T ss_pred EEEec
Confidence 88854
No 21
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=100.00 E-value=1.3e-33 Score=267.75 Aligned_cols=217 Identities=28% Similarity=0.351 Sum_probs=162.4
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCC-----HHHH-hhhCCCceEEEeccccCC----C--------C
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVS-----NDVL-DLVAPNARLLYVGKTAGY----H--------S 187 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~-----~~ll-~~l~~~~e~i~~~~~~~~----~--------~ 187 (381)
+|+||+||+|||||++||+||+++|++||+|+++.... ..++ ++++++++++.+..++.. . .
T Consensus 2 ~g~l~~VG~GPGdp~LlTlkA~~~L~~advi~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~pm~~~~~~~~~~~~~~~~ 81 (241)
T PRK05990 2 KGRLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGKKGNAFGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYETVIA 81 (241)
T ss_pred CceEEEEeCCCCChHHhhHHHHHHHhhCCEEEEECCCCCcchHHHHHHHHcCCCceEEEeecCCccccccccchhhhHHH
Confidence 58999999999999999999999999999999875332 1233 466655554332221111 1 1
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEe
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFL 267 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~iv 267 (381)
..++++++.|.+++++|++||+|+.|||++||++.++++.+.+ +++++|||||||+++++|++|+||+.++. .+.++
T Consensus 82 ~~~~~~~~~i~~~~~~G~~Vv~L~~GDP~iyst~~~l~~~l~~-~i~~evIPGISS~~aaaA~~gipL~~~~~--~~~i~ 158 (241)
T PRK05990 82 DFYDTSAEAVAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLAP-RYETEVIPGVCSMLGCWSVLGAPLVYRNQ--SLSVL 158 (241)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEeCCCcHHHhHHHHHHHHHhc-CCCEEEECcHHHHHHHHHHhCCCeEcCCe--EEEEE
Confidence 1246778889999999999999999999999999999998854 79999999999999999999999987664 35556
Q ss_pred cCCCCCCCCChHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccC
Q 016852 268 TGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVE 347 (381)
Q Consensus 268 s~hgr~~~~~~~~l~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~ 347 (381)
++|... ..+...+...+.+ |+++...++.+|++.|.+.|+.+ ++++++++|+++|++.. +.++.. .
T Consensus 159 ~~~~~~-----~~l~~~l~~~~~~-vv~k~~~~~~~i~~~L~~~g~~~--~~~~v~~~~~~~E~i~~--~~~~~~----~ 224 (241)
T PRK05990 159 SGVLPE-----EELRRRLADADAA-VIMKLGRNLDKVRRVLAALGLLD--RALYVERATMANQRIVP--LAEVDP----M 224 (241)
T ss_pred cCCCCh-----HHHHHHHhCCCCE-EEEEeCCcHHHHHHHHHHcCCCC--CEEEEEECCCCCeEEEE--ccccCC----C
Confidence 654211 1233444444444 44444589999999999998764 36677999999999874 444332 2
Q ss_pred CCCCcEEEEEcC
Q 016852 348 ELVSPTLIIIGK 359 (381)
Q Consensus 348 ~~~~~~viiIg~ 359 (381)
..++.++++|.+
T Consensus 225 ~~~Y~s~iiv~~ 236 (241)
T PRK05990 225 ASPYFSLILVPG 236 (241)
T ss_pred CCCceEEEEEec
Confidence 467899999976
No 22
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=100.00 E-value=7.3e-34 Score=262.66 Aligned_cols=202 Identities=24% Similarity=0.355 Sum_probs=160.1
Q ss_pred EEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEE
Q 016852 131 LVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRL 210 (381)
Q Consensus 131 lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL 210 (381)
+||+||||+++||++|+++|++||+|+++.+..+.+..+++.+.+++. ....++++.+.+.+.++ |++||+|
T Consensus 1 iVG~GpG~~~~lT~~a~~~L~~advv~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~-g~~vv~l 72 (204)
T TIGR02467 1 VVGIGPGGPELLTPAAIEAIRKADLVVGGERHLELLAELIGEKREIIL-------TYKDLDELLEFIAATRK-EKRVVVL 72 (204)
T ss_pred CEEeCCCChhhcCHHHHHHHHhCCEEEechhhHHHHhhhcCCceEecc-------CcCCHHHHHHHHHHhcC-CCCEEEE
Confidence 699999999999999999999999999988765554444443332221 12357888888887765 9999999
Q ss_pred ecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHHhcCCCC
Q 016852 211 KGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDS 290 (381)
Q Consensus 211 ~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~l~~~~~ 290 (381)
++|||++|+++.++++.+.+ .++++||||||+++++|++|+||+ ++.+++.|++... .. ....+... .
T Consensus 73 ~~GDP~~~~~~~~l~~~~~~--~~v~iiPGiSs~~~a~a~~g~~l~------~~~~is~~~~~~~--~~-~~~~l~~~-~ 140 (204)
T TIGR02467 73 ASGDPLFYGIGRTLAERLGK--ERLEIIPGISSVQYAFARLGLPWQ------DAVVISLHGRELD--EL-LLALLRGH-R 140 (204)
T ss_pred ecCCCcccccHHHHHHhCCC--CcEEEeCChHHHHHHHHHcCCChh------hCeEEEeeCCCCc--HH-HHHHHhcC-C
Confidence 99999999999999988865 389999999999999999999998 4788999988532 11 23344444 4
Q ss_pred cEEEEcCC-CCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEE
Q 016852 291 TLVVYMGL-STLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTL 354 (381)
Q Consensus 291 tlVIl~~~-~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~v 354 (381)
++++|+.. .+++++++.|.+.|+++.+++++++++|+++|++..++++|+.+. ..++...++
T Consensus 141 ~~vvl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~--~~~~~~~~~ 203 (204)
T TIGR02467 141 KVAVLTDPRNGPAEIARELIELGIGGSYELTVGENLGYEDERITEGTLEEIAAA--QFDFSPLLV 203 (204)
T ss_pred cEEEEeCCCCCHHHHHHHHHHCCCCCCeEEEEEcccCCCCeEEEeCCHHHHhhc--ccCCcccee
Confidence 56666655 689999999999999877799999999999999999999999764 124444443
No 23
>PTZ00175 diphthine synthase; Provisional
Probab=100.00 E-value=3.3e-33 Score=268.58 Aligned_cols=220 Identities=24% Similarity=0.296 Sum_probs=175.0
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCH------HHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHH
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSN------DVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFA 201 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~------~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~ 201 (381)
+||+||+||||+++||+||+++|++||+|+++.+++. ..+..+- +++.+..+ ....++..+.+.+.+
T Consensus 2 mlylVG~GpGdp~lLTlkal~~L~~ADvV~~d~~ts~l~~~~~~~l~~~~-gk~~~~~~------r~~~e~~~~~ii~~a 74 (270)
T PTZ00175 2 MLYIIGLGLGDEKDITVKGLEAVKSADVVYLESYTSILINSNKEKLEEFY-GKPVIEAD------REMVEEGCDEILEEA 74 (270)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEecccchhccCCHHHHHHhc-CCeeEecC------ccCHHHHHHHHHHHh
Confidence 7999999999999999999999999999999876432 1122111 22222221 123444455666776
Q ss_pred HcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHH
Q 016852 202 EVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFV 281 (381)
Q Consensus 202 ~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l 281 (381)
+ +++||+|++|||++|+++.+++..+++.|+++++|||+|+++++ +.+|++++++|.+.++.|++.|.++.... ..+
T Consensus 75 ~-~~~Vv~L~~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~sA~-~~~Gl~~~~fg~~~sv~~~t~~~~~~s~~-~~i 151 (270)
T PTZ00175 75 K-EKNVAFLVVGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAI-GCTGLQLYRFGETVSIPFFTETWKPDSFY-DKI 151 (270)
T ss_pred C-CCCEEEEECCCCCccCCHHHHHHHHHHCCCcEEEECCcCHHHHH-hhcCCCcCCCCceEEEEEEeCCCCCCChh-HHH
Confidence 4 68999999999999999999999999999999999999988777 66999999999999999999998764421 226
Q ss_pred HHHhcCCCCcEEE------------------------EcC----CCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEE
Q 016852 282 AENAADPDSTLVV------------------------YMG----LSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIV 333 (381)
Q Consensus 282 ~~~l~~~~~tlVI------------------------l~~----~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~ 333 (381)
++++....+|+|+ ||+ .+.+.++.+.+.+.+++++|+++++.|+|+++|+|.
T Consensus 152 ~~n~~~glhTl~lldi~~~~~~~~~~~~~~~~~~~~~~M~~~~a~~~l~~i~~~~~~~~~~~~t~~v~v~r~g~~~q~i~ 231 (270)
T PTZ00175 152 KANRDNGLHTLCLLDIKVKERSVENLMKGRKIYEPPRYMTINQAIEQLLEVEEKKGGGVIAEDTLVVGVARVGSDDQQIV 231 (270)
T ss_pred HHHHHcCCceEEEEeeeccccchhhhhccccccCCCcCCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEECCCCCceEE
Confidence 6788888899999 676 334556666777778999999999999999999999
Q ss_pred EEehhhHHHhhccCCCCCc--EEEEEcCcc
Q 016852 334 FSELKDLADKIGVEELVSP--TLIIIGKVV 361 (381)
Q Consensus 334 ~~tL~eL~~~l~~~~~~~~--~viiIg~~~ 361 (381)
.++|+++.+. ++..| ++||+|+.+
T Consensus 232 ~gtL~~l~~~----d~g~PlhsLIv~g~~L 257 (270)
T PTZ00175 232 SGTLEDLLDV----DFGPPLHSLVICAPTL 257 (270)
T ss_pred EEEHHHHhhc----ccCCCCEEEEEECCcC
Confidence 9999999653 56666 999999743
No 24
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=100.00 E-value=6.2e-33 Score=264.41 Aligned_cols=217 Identities=26% Similarity=0.396 Sum_probs=161.2
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHH--HHHHHHHc
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHE--LLLSFAEV 203 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~--~i~~~~~~ 203 (381)
+|+||+||+||||+++||++|+++|++||+|++..+ +++.++........ .....+++.+ .+.....+
T Consensus 2 ~~~l~iVG~GpG~p~~lT~~a~~~l~~AdvV~~~~~----~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 71 (250)
T PRK05991 2 SGRLFVIGTGPGNPEQMTPEALAAVEAATDFFGYGP----YLDRLPLRADQLRH------ASDNREELDRAGAALAMAAA 71 (250)
T ss_pred CceEEEEEeCCCChhhhhHHHHHHHHhCCEEEEcHH----HHHhhhcccccccc------CCCCHHHHHHHHHHHHHHHC
Confidence 489999999999999999999999999999999754 34544321111111 1122233322 23445568
Q ss_pred CCeEEEEecCCCCCcCCHHHHHHHHHh-----CCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCCh
Q 016852 204 GATVVRLKGGDPLVFGRGGEEMDFLQQ-----KGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDP 278 (381)
Q Consensus 204 Gk~VvvL~sGDP~~ys~~~~l~~~l~~-----~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~ 278 (381)
|++||+|++|||+||+++.++.+.+++ .|++++|||||||+|+++|++|+||++ ++.+++.|+.......
T Consensus 72 g~~Vv~l~~GDP~~~~~~~~l~~~~~~g~~~~~~~~v~vvPGISS~~aa~a~~g~p~~~-----~~~~~s~~~~~~~~~~ 146 (250)
T PRK05991 72 GANVCVVSGGDPGVFAMAAAVCEAIENGPAAWRAVDLTIVPGVTAMLAVAARIGAPLGH-----DFCAISLSDNLKPWEL 146 (250)
T ss_pred CCeEEEEeCCCchhhhhHHHHHHHHHhcccccCCceEEEECChHHHHHHHHHhCCCCCC-----CCEEeecccCCCCHHH
Confidence 999999999999999999999998874 368999999999999999999999975 3667899964321111
Q ss_pred H-HHHHHhcCCCCcEEEEcCCC--C---HHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCc
Q 016852 279 L-FVAENAADPDSTLVVYMGLS--T---LPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSP 352 (381)
Q Consensus 279 ~-~l~~~l~~~~~tlVIl~~~~--~---~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~ 352 (381)
. .....+...+.++|||++.. + +.++.+.|.+. +.+++++++++++|+++|+|+.+++.++... .++.+
T Consensus 147 l~~~l~~~~~~~~~~vl~~~~~~~~p~~l~~~~~~L~~~-~~~~~~v~v~~~lg~~dE~i~~~~l~el~~~----~~~~~ 221 (250)
T PRK05991 147 IEKRLRLAAEAGFVIALYNPISRARPWQLGEAFDLLREH-LPATVPVIFGRAAGRPDERIAVAPLAEADAS----MADMA 221 (250)
T ss_pred HHHHHHhhcCCCeEEEEECCccccchhhHHHHHHHHHhc-CCCCCEEEEEEeCCCCCcEEEEEEHHHhhhh----ccCCC
Confidence 1 11223334567888886642 3 34455666654 6677899999999999999999999999853 56899
Q ss_pred EEEEEcCccc
Q 016852 353 TLIIIGKVVS 362 (381)
Q Consensus 353 ~viiIg~~~~ 362 (381)
++++||+...
T Consensus 222 s~vivg~~~~ 231 (250)
T PRK05991 222 TCVIIGSAET 231 (250)
T ss_pred eEEEECCCcc
Confidence 9999999884
No 25
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=100.00 E-value=1.1e-31 Score=259.95 Aligned_cols=224 Identities=21% Similarity=0.240 Sum_probs=184.1
Q ss_pred CCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEc-CCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHH
Q 016852 123 KCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYD-RLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFA 201 (381)
Q Consensus 123 ~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~-~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~ 201 (381)
..++|+||+||+||||+++||+||+++|++||+|+++ .+....+++++..+.+++.+ +..++++..+.|.+.+
T Consensus 8 ~~~~g~Ly~VgtgiGn~edITlRAl~~L~~aDvI~~edtr~t~~ll~~~~i~~~~~~~------~~~~~~~~~~~i~~~l 81 (287)
T PRK14994 8 DNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFAINARLFAL------HDHNEQQKAETLLAKL 81 (287)
T ss_pred CCCCCeEEEEeCCCCChHHhhHHHHHHHHhCCEEEEeCCcchHHHHhhcCCCCEEEEc------cCCCHHHHHHHHHHHH
Confidence 3457999999999999999999999999999999994 55556688888777666544 3346788888999999
Q ss_pred HcCCeEEEEe-cCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHH
Q 016852 202 EVGATVVRLK-GGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLF 280 (381)
Q Consensus 202 ~~Gk~VvvL~-sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~ 280 (381)
.+|++||+++ .|||++|+++.++++.+++.|++|++||||||+++|++.+|+|-+.+. ...|++.+... ...
T Consensus 82 ~~G~~ValvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG~~~~~f~---f~Gflp~~~~~----r~~ 154 (287)
T PRK14994 82 QEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFC---YEGFLPAKSKG----RRD 154 (287)
T ss_pred HCCCeEEEEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcCCCCCcce---EeEECCCCCch----HHH
Confidence 9999999997 999999999999999999999999999999999999999999954321 12356654221 122
Q ss_pred HHHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhcc--CCCCCcEEEEEc
Q 016852 281 VAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGV--EELVSPTLIIIG 358 (381)
Q Consensus 281 l~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~--~~~~~~~viiIg 358 (381)
.+..+.....|+|||+.++++.++.+.|.+. ++.+++++++.++|..+|.+++++++++.+.+.. ...++..||||.
T Consensus 155 ~L~~l~~~~~t~V~yesp~R~~~~l~~l~~~-~g~~~~v~i~relTk~~E~~~~g~~~~i~~~~~~~~~~~kGE~vivi~ 233 (287)
T PRK14994 155 ALKALEAEPRTLIFYESTHRLLDSLEDIVAV-LGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVE 233 (287)
T ss_pred HHHHHhcCCCeEEEEEEChhHHHHHHHHHHh-cCCCCeEEEEeeccCCCCcEEeeEHHHHHHHHHhcCCCCCceEEEEEe
Confidence 3455667788999999999998888888875 5566789999999999999999999999998743 345789999997
Q ss_pred Cc
Q 016852 359 KV 360 (381)
Q Consensus 359 ~~ 360 (381)
+.
T Consensus 234 ~~ 235 (287)
T PRK14994 234 GH 235 (287)
T ss_pred CC
Confidence 63
No 26
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=100.00 E-value=6.4e-32 Score=249.11 Aligned_cols=217 Identities=29% Similarity=0.494 Sum_probs=175.0
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcC
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVG 204 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~G 204 (381)
+.|+||+||+|||++++||++|.++|++||+|+|-..-.+ +++ +.++++++..+. ...-+.++..+++++.|
T Consensus 1 ~~G~L~VVGiGPG~~~~mT~~A~~al~~ad~ivGY~~Y~d-~i~-l~~~k~v~~s~m------~~Ei~Ra~~AielA~~G 72 (249)
T COG1010 1 MTGKLYVVGIGPGDPELMTPEARRALEEADVIVGYTTYLD-LIE-LRPGKEVIRSGM------REEIERAKEAIELAAEG 72 (249)
T ss_pred CCceEEEEEeCCCChhhCCHHHHHHHHhCCEEEecHHHHH-HHh-cCCCCEEEeCCc------HhHHHHHHHHHHHHhcC
Confidence 3699999999999999999999999999999998543222 234 455677664331 12234466778888999
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCC---CcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHH
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKG---IQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFV 281 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~g---i~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l 281 (381)
++|+++++|||++|+.++..++.+.+.| ++|+|+||||++++++|++|-|+.+. +-.+|+- +...|++.
T Consensus 73 ~~ValVSsGDpgVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hD-----F~~ISLS---DlLtPwe~ 144 (249)
T COG1010 73 RDVALVSSGDPGVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHD-----FCVISLS---DLLTPWEV 144 (249)
T ss_pred CeEEEEeCCCccHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccc-----eEEEEhH---hcCCcHHH
Confidence 9999999999999999999999888654 89999999999999999999999984 4455542 33456664
Q ss_pred H----HHhcCCCCcEEEEcCCC-----CHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCc
Q 016852 282 A----ENAADPDSTLVVYMGLS-----TLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSP 352 (381)
Q Consensus 282 ~----~~l~~~~~tlVIl~~~~-----~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~ 352 (381)
+ ..++..+.+++||.+.+ .+.+..+.|.++ .+++|||.++.++|.++|.+...||+++.+ ....++.
T Consensus 145 IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~-r~~~tpVgivrnagR~~e~v~ittL~~l~~---~~~iDM~ 220 (249)
T COG1010 145 IEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEILREH-RSPDTPVGIVRNAGREGEEVRITTLGDLDE---AEEIDMR 220 (249)
T ss_pred HHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHHHHh-cCCCCcEEEEecCCCCCceEEEEEhHHhcc---cccccce
Confidence 3 33556788999999875 357788888887 678999999999999999999999999985 1367899
Q ss_pred EEEEEcCcc
Q 016852 353 TLIIIGKVV 361 (381)
Q Consensus 353 ~viiIg~~~ 361 (381)
+++||||.-
T Consensus 221 T~vIIGns~ 229 (249)
T COG1010 221 TIVIIGNSE 229 (249)
T ss_pred EEEEEcCCc
Confidence 999999974
No 27
>PRK04160 diphthine synthase; Provisional
Probab=100.00 E-value=2.5e-31 Score=254.45 Aligned_cols=220 Identities=22% Similarity=0.280 Sum_probs=158.9
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCC-------HHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHH-H
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVS-------NDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLL-S 199 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~-------~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~-~ 199 (381)
+||+||+||||+++||++|+++|++||+|+++.... +.+...... +.... .....++..+.+. +
T Consensus 1 ~l~vVG~GpG~pd~lT~~a~~~L~~advv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~ 72 (258)
T PRK04160 1 MLYFIGLGLYDERDITLKGLEALRNADKVYAEFYTSILMGTTIEKLEELIGK--EIIVL------DREDVEQESEKIILE 72 (258)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEecccCccccccHHHHHHHhCC--ceeec------CHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999965432 122233221 11111 0112344445444 4
Q ss_pred HHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChH
Q 016852 200 FAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPL 279 (381)
Q Consensus 200 ~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~ 279 (381)
.. ++++||+|++|||+||+++.++++.+++.|++++|||||||+++++|++|+|++.++.+.++.+.+.+.... .+.
T Consensus 73 ~~-~~~~Vv~L~sGDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~~~~~g~~~s~~~~~~~~~~~--~~~ 149 (258)
T PRK04160 73 EA-KEKNVAFLTAGDPMVATTHVDLRLEAKKRGIEVRVIHGVSIYSAAISLTGLQNYKFGKSVTVPFPYGNFFPE--SPY 149 (258)
T ss_pred HH-cCCCEEEEeCCCCccccCHHHHHHHHHHCCCcEEEECChhHHHHHHHHhCCCcccCCceEEEccCcCCcCCC--CHH
Confidence 44 458999999999999999999999999999999999999999999999999998877655554444332111 122
Q ss_pred H-HHHHhcCCCCcEEEEc---C--CCCHHHHHHHHHHC-------CCCCCceeeeEecCCCCCcEEEEEehhhHHHhhcc
Q 016852 280 F-VAENAADPDSTLVVYM---G--LSTLPSLALKLMHH-------GLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGV 346 (381)
Q Consensus 280 ~-l~~~l~~~~~tlVIl~---~--~~~~~~Ia~~L~~~-------G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~ 346 (381)
. +.+.+.....+++++. + ...+..+++.|.+. ++++++++++++|+|+++|+|..++++++.+.
T Consensus 150 ~~i~~~~~~~~~~~vll~~~~~~~~~~~~~~~~~L~~~~~~l~~g~~~~~~~v~V~e~l~~~~E~i~~~tl~~l~~~--- 226 (258)
T PRK04160 150 DVIKDNLERGLHTLVLLDIKADGRYMTANEALELLLELEEKRGEGVISEDTLAVVVARAGSPDPVVRAGRLEELADY--- 226 (258)
T ss_pred HHHHHHHhcCCCcEEEEEeccCCcccCHHHHHHHHHHHHHHhcccccCCCCEEEEEEecCCCCceEEEccHHHHhhC---
Confidence 2 3455555567888874 1 23455666666553 36678999999999999999999999999653
Q ss_pred CCCC-CcEEEEEcCccc
Q 016852 347 EELV-SPTLIIIGKVVS 362 (381)
Q Consensus 347 ~~~~-~~~viiIg~~~~ 362 (381)
++. .+++++|...++
T Consensus 227 -~f~~~~~~~ii~~~~~ 242 (258)
T PRK04160 227 -DFGGPLHILIIPGKLH 242 (258)
T ss_pred -CCCCCCEEEEEeCCCC
Confidence 564 477777776653
No 28
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=99.98 E-value=5.9e-31 Score=245.71 Aligned_cols=219 Identities=28% Similarity=0.376 Sum_probs=170.7
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEc-----CCCCHH-HHhhhCCCceEEEeccccCCC-----CCCHHHHH
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYD-----RLVSND-VLDLVAPNARLLYVGKTAGYH-----SRTQEEIH 194 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~-----~~~~~~-ll~~l~~~~e~i~~~~~~~~~-----~~~~eei~ 194 (381)
++++|.||+||||||+||+||+++|++||+|+++ ...... +.+++.++.+...+.+++... ..-+++++
T Consensus 1 ~~klygVGvGPGDPeLlTlkAi~~L~~adVi~~P~~~g~~slAr~Iv~~y~~~~~~~~~l~fPm~~~~~e~~~~~~~e~a 80 (234)
T COG2243 1 MGKLYGVGLGPGDPELLTLKAIRALKKADVVYVPSKKGKGSLAREIVEDYLTPGSRIVELHFPMTTDMREELEDAWEEAA 80 (234)
T ss_pred CCeEEEEecCCCChhhhhHHHHHHHhhCCEEEEecCCCccchHHHHHHHhcCCCceeeEEEeccCCchHHHHHHHHHHHH
Confidence 4899999999999999999999999999999998 333333 345556566555544333332 24567888
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCC
Q 016852 195 ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKG 274 (381)
Q Consensus 195 ~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~ 274 (381)
+.+.+++.+|++|++++.|||+|||+..+|.++++..|+++++||||||+++++|++|+|+..++... .++++..+.
T Consensus 81 ~~va~~l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS~~a~aa~~~~pL~~g~~~l--~Vlp~t~~~- 157 (234)
T COG2243 81 AEVAAELEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGVSSFSACAARLGVPLVEGDDSL--SVLPATRPD- 157 (234)
T ss_pred HHHHHHHHcCCeEEEEEccCccHHHHHHHHHHHhhccCCceEEeCCcchHHHHHHHhCCceeccCcee--EEEeccCch-
Confidence 88999999999999999999999999999999999999999999999999999999999999888754 445554332
Q ss_pred CCChHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEE
Q 016852 275 GTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTL 354 (381)
Q Consensus 275 ~~~~~~l~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~v 354 (381)
..+.+.+. ...++|++.......++.+.|...|...+ +++++|+++++|+|.. +.+.... +.+..++
T Consensus 158 ----~~~~~~l~-~~d~~VvMK~~~~~~~i~~~l~~~g~~~~--~~~v~R~~m~~e~i~~--l~~~~~~----~~~Yfs~ 224 (234)
T COG2243 158 ----EELERALA-DFDTAVVMKVGRNFEKLRRLLAKLGLLDR--AVYVERATMAGEKIVR--LAEAERD----EKPYFST 224 (234)
T ss_pred ----hhHHhHHh-hCCeEEEEecCCcHHHHHHHHHhcCCCce--EEEEeecCCCCcEEEe--ccccCcc----cCCceEE
Confidence 12223343 34677777777788899999888887754 6799999999999987 5554432 3477888
Q ss_pred EEEcCc
Q 016852 355 IIIGKV 360 (381)
Q Consensus 355 iiIg~~ 360 (381)
+++...
T Consensus 225 ii~~r~ 230 (234)
T COG2243 225 ILVRRK 230 (234)
T ss_pred EEEecc
Confidence 888654
No 29
>PRK08284 precorrin 6A synthase; Provisional
Probab=99.97 E-value=1.1e-30 Score=249.17 Aligned_cols=201 Identities=25% Similarity=0.352 Sum_probs=146.1
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCC-CC--------HHHH-hhhC-CCceEEEeccccCCCC-------
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRL-VS--------NDVL-DLVA-PNARLLYVGKTAGYHS------- 187 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~-~~--------~~ll-~~l~-~~~e~i~~~~~~~~~~------- 187 (381)
+.+||+||+||||||+||+||+++|++||+|+++.. .. ..+. ..+. ++++++.+..++....
T Consensus 1 ~~kly~VGvGPGDPeLLTlkA~r~L~~advV~~p~~~~~~~~la~~a~~iv~~~~~~~~~~~~~l~~p~~~~~~~~~~~~ 80 (253)
T PRK08284 1 MRRLLLIGIGAGDPDHLTLQAIKALNRADVFFVPDKGADKDDLVALRREICARHITGPGYRVVEFDDPVRDRAPDDYRAA 80 (253)
T ss_pred CcEEEEEEecCCChhHhhHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhcCCCceEEecCCCCcccchhhhhhh
Confidence 358999999999999999999999999999999543 11 1122 2232 4567776654321110
Q ss_pred ------CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhC---CCcEEEEcCchHHHHHHHhcCCCCccC
Q 016852 188 ------RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQK---GIQVKVIPGITAASGIAAELGIPLTHR 258 (381)
Q Consensus 188 ------~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~---gi~veVIPGISS~~aaaA~lGipl~~~ 258 (381)
..++.+.+.|.+++++|++||+|++|||+|||++.++++.+.+. |++++|||||||+++++|++|+||+..
T Consensus 81 ~~~~~~~~~~~~~~~i~~~l~~g~~Vv~l~~GDP~~ys~~~~l~~~l~~~~~~~i~vevVPGISS~~aaaA~lg~pl~~~ 160 (253)
T PRK08284 81 VDDWHAARAALYERLIAEELPDGGTGAFLVWGDPSLYDSTLRILERVRARGRVAFDYEVIPGITSVQALAARHRIPLNRI 160 (253)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCcchhhHHHHHHHHHHhhccCCCcEEEECChhHHHHHHHHcCCChhcC
Confidence 11233356788899999999999999999999999999999864 899999999999999999999999975
Q ss_pred cccceeEEecCCCCCCCCChHHHHHHhcCCCCcEEEEcCCC-CHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEeh
Q 016852 259 GVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLS-TLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSEL 337 (381)
Q Consensus 259 ~~~~~v~ivs~hgr~~~~~~~~l~~~l~~~~~tlVIl~~~~-~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL 337 (381)
+. ++.++++ +.. ...+.....++|++.... .+.++. . .++++++++|+|+|+|+|+.+++
T Consensus 161 ~~--~l~ii~g--~~l-------~~~l~~~~~~vvv~k~~~~~~~~L~----~----~~~~v~v~e~l~~p~E~I~~~~l 221 (253)
T PRK08284 161 GE--PVHITTG--RRL-------AEGWPAGVDNVVVMLDGECSFRRLD----D----PDLEIWWGAYLGTPDEILIAGPL 221 (253)
T ss_pred Cc--eEEEEec--Cch-------HHHHHhcCCcEEEEECCcCCHHHHc----C----CCCEEEEEecCCCCCeEEEEccH
Confidence 53 4555544 321 111212224455544443 565432 2 34679999999999999999999
Q ss_pred hhHHHhhc
Q 016852 338 KDLADKIG 345 (381)
Q Consensus 338 ~eL~~~l~ 345 (381)
+++.+..+
T Consensus 222 ~ei~~~~~ 229 (253)
T PRK08284 222 AEVAEEIL 229 (253)
T ss_pred HHHHHHHH
Confidence 99988654
No 30
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=99.97 E-value=1.9e-30 Score=246.86 Aligned_cols=199 Identities=22% Similarity=0.305 Sum_probs=146.1
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCC-CC--------HHHH-hhhC-CCceEEEeccccCCC---------
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRL-VS--------NDVL-DLVA-PNARLLYVGKTAGYH--------- 186 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~-~~--------~~ll-~~l~-~~~e~i~~~~~~~~~--------- 186 (381)
.+||+||+||||||+||+||+++|++||+|+++.. .. ..++ .++. ++++++.+.+++...
T Consensus 1 ~~l~~VG~GPGDPeLLTlkA~r~L~~AdvV~~p~~~~~~~~l~~~a~~i~~~~~~~~~~~i~~~~~pm~~~~~~~y~~~~ 80 (249)
T TIGR02434 1 RTILLIGIGAGDPEQLTLQAVDALNHADVFFVLDKGEQKSDLVALRREICARYVTAPGYRIVEVDDPERDAGADDYRAAV 80 (249)
T ss_pred CEEEEEEeCCCChHHhHHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhCCCCcEEEEecCCCcCCccchhhhhH
Confidence 37999999999999999999999999999999532 11 1222 2233 455666553322211
Q ss_pred ----CCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHh---CCCcEEEEcCchHHHHHHHhcCCCCccCc
Q 016852 187 ----SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQ---KGIQVKVIPGITAASGIAAELGIPLTHRG 259 (381)
Q Consensus 187 ----~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~---~gi~veVIPGISS~~aaaA~lGipl~~~~ 259 (381)
...++++++.|.+.+++|++||+|++|||+|||++.++++.+.+ .+++++|||||||+++++|++|+||++.+
T Consensus 81 ~~~~~~~~~~~a~~i~~~~~~g~~Vv~L~~GDP~~yst~~~l~~~l~~~~~~~~~vevVPGISS~~aaaA~lg~pl~~~~ 160 (249)
T TIGR02434 81 DDWHAQRADIWAQAIAEELGDDGTGAFLVWGDPSLYDSTLRILERLRALGGVPFDYEVIPGITSVQALTARHRIPLNRIG 160 (249)
T ss_pred HHhhhhHHHHHHHHHHHHHhCCCcEEEEeCCCchHhhhHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHhCCCcccCC
Confidence 11223577889898999999999999999999999999998886 46899999999999999999999999854
Q ss_pred ccceeEEecCCCCCCCCChHHHHHH-hcCCCCcEEEEcCCCC-HHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEeh
Q 016852 260 VANSVRFLTGHSRKGGTDPLFVAEN-AADPDSTLVVYMGLST-LPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSEL 337 (381)
Q Consensus 260 ~~~~v~ivs~hgr~~~~~~~~l~~~-l~~~~~tlVIl~~~~~-~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL 337 (381)
. .+.++ |++.. ... +. ...++|++..... +.++.+ .++++++++|+|+|+|+|+.+++
T Consensus 161 ~--~l~v~--~g~~l-------~~~~l~-~~~~~vilk~~~~~~~~l~~--------~~~~~~v~e~lg~pdE~I~~~~l 220 (249)
T TIGR02434 161 E--PVQIT--TGRRL-------AEGGFP-EGDTVVVMLDGEQAFQRVDP--------EDIDIYWGAYLGTPDEILISGPL 220 (249)
T ss_pred c--eEEEE--eccch-------hhcccc-CCCeEEEEECCccCHHHhcC--------CCCEEEEEEeCCCCCeEEEEccH
Confidence 3 24344 55421 112 33 3455666655544 665532 24579999999999999999999
Q ss_pred hhHHHhhc
Q 016852 338 KDLADKIG 345 (381)
Q Consensus 338 ~eL~~~l~ 345 (381)
.++.+..+
T Consensus 221 ~~l~~~~~ 228 (249)
T TIGR02434 221 AEVGPRIA 228 (249)
T ss_pred HHHHHHHH
Confidence 99887543
No 31
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=99.92 E-value=1e-23 Score=200.02 Aligned_cols=222 Identities=22% Similarity=0.298 Sum_probs=188.3
Q ss_pred CCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEE-cCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHH
Q 016852 124 CGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAE 202 (381)
Q Consensus 124 ~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~-~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~ 202 (381)
.++|.+|+|++..||.+.||.||.++|+++|+|++ ++|+...++.++..+...+ .+|+.+.++....|++.++
T Consensus 2 ~~~g~LYlV~TPIGNl~Dit~Ral~~L~~~D~iaaEDTR~t~~LL~~~~I~~~~i------s~h~hne~~~~~~li~~l~ 75 (275)
T COG0313 2 MMMGTLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVTRKLLSHLGIKTPLI------SYHEHNEKEKLPKLIPLLK 75 (275)
T ss_pred CCCceEEEeCCCCCChHhcCHHHHHHHhhCCEEEEeccHHHHHHHHHhCCCCcee------cccCCcHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999 7888889999998765543 4566778888899999999
Q ss_pred cCCeEEEEe-cCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHH
Q 016852 203 VGATVVRLK-GGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFV 281 (381)
Q Consensus 203 ~Gk~VvvL~-sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l 281 (381)
+|++|++++ .|-|++.++|..|++.+++.|++|+++||+||+..|.+..|+|-+.+-. ..|++. +.. .....
T Consensus 76 ~g~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F~F---~GFLP~---k~~-~R~~~ 148 (275)
T COG0313 76 KGKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRFLF---EGFLPR---KSK-ERRKR 148 (275)
T ss_pred cCCeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCeeE---eccCCC---Ccc-HHHHH
Confidence 999999998 9999999999999999999999999999999999999999999885321 123332 222 22334
Q ss_pred HHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcC
Q 016852 282 AENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGK 359 (381)
Q Consensus 282 ~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~ 359 (381)
++.+.....++|+|..++++.+..+.+.+. ++.++.++++..|+...|.+.++++.++.+.+.+...+.+.|++|..
T Consensus 149 l~~l~~~~~t~IfyEsphRl~~tL~d~~~~-~g~~r~v~vaRELTK~~Ee~~~g~~~e~~~~~~~~~~KGE~vlvv~~ 225 (275)
T COG0313 149 LEALANEPRTLIFYESPHRLLATLEDIVEV-LGSDREVVVARELTKLFEEIYRGTLSELIEWLEEDTLKGEFVLVVEG 225 (275)
T ss_pred HHHHHhcCCeEEEEecchhHHHHHHHHHHH-cCCCceEEEEeecccchhheecccHHHHHHHhhhcCCcccEEEEEeC
Confidence 555666678899999999999999988887 77678999999999999999999999998887654378899999965
No 32
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.6e-23 Score=191.91 Aligned_cols=218 Identities=23% Similarity=0.267 Sum_probs=165.6
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCH-------HHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHH
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSN-------DVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSF 200 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~-------~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~ 200 (381)
++|+||.|+.|...+|+++++++++||.|+.+.+++. .+.+++ +++++..+.. ..|+--+.|.+.
T Consensus 1 mL~lVGlGL~d~~diTl~gleavr~~d~Vy~E~YTS~~~~~~~e~le~~~--gkev~~~~R~------dlE~~~~~il~~ 72 (260)
T COG1798 1 MLYLVGLGLYDEGDITLKGLEAVRKADRVYAEFYTSILLGSNLEKLEELI--GKEVILLDRE------DLEENSRSILDR 72 (260)
T ss_pred CeEEEEeccCccCceeHHHHHHHHhCCEEEEEeeecccccchHHHHHHHh--CCceEeccHH------HHhhcchhHHHH
Confidence 5899999999999999999999999999999876653 233333 3455544321 112212356677
Q ss_pred HHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHH
Q 016852 201 AEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLF 280 (381)
Q Consensus 201 ~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~ 280 (381)
+++ ++|++|+.|||++..++..|+-..+++|++|+||||+|.++++++..|+..+++|.+.++.+.+.+..+. .+.+
T Consensus 73 a~~-~~Vall~~GDpmvATTH~~L~~~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkFG~~vTip~~~~~~~p~--s~yd 149 (260)
T COG1798 73 AKD-KDVALLVAGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAIGLTGLQNYKFGKTVTLPFPSENFFPT--SPYD 149 (260)
T ss_pred Hhc-CCEEEEecCCcceehhHHHHHHHHHHcCCcEEEEcccHHHHHHhhhhhhheeccCCceEecccccCcCCC--cHHH
Confidence 755 5799999999999999999999999999999999999999999999999999999988877766554432 2333
Q ss_pred -HHHHhcCCCCcEEEEcCCC-----CHHHHHHHHHH----C---CCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccC
Q 016852 281 -VAENAADPDSTLVVYMGLS-----TLPSLALKLMH----H---GLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVE 347 (381)
Q Consensus 281 -l~~~l~~~~~tlVIl~~~~-----~~~~Ia~~L~~----~---G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~ 347 (381)
+.++...+-+|+++++-.. .+.+-++.|++ . .+.+++.++++.++|.++|.|..+++++|.+.
T Consensus 150 ~Ik~N~~~GLHTl~lLDi~~~~r~Mt~~ea~~~LLe~e~~~~~~~~~~d~~~vvvaR~Gs~~~~v~ag~l~~l~~~---- 225 (260)
T COG1798 150 VIKENLERGLHTLVLLDIKEDERYMTANEALELLLEAEERRGRGVLTEDTLAVVVARAGSGDEVVRAGTLEELADE---- 225 (260)
T ss_pred HHHHhhhcCccceEEEEecccccccCHHHHHHHHHHHHHHhcCCCcCCCceEEEEEecCCCCceEEechHHHHhhc----
Confidence 4566777888999875432 24555555554 2 25688999999999999999999999999985
Q ss_pred CCCCc-EEEEEcCc
Q 016852 348 ELVSP-TLIIIGKV 360 (381)
Q Consensus 348 ~~~~~-~viiIg~~ 360 (381)
++..| .++||...
T Consensus 226 Dfg~Plh~lvvp~~ 239 (260)
T COG1798 226 DFGEPLHSLVVPGR 239 (260)
T ss_pred ccCCCceEEEEecc
Confidence 45444 55555443
No 33
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=99.89 E-value=1.8e-21 Score=187.52 Aligned_cols=217 Identities=19% Similarity=0.199 Sum_probs=177.2
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEE-cCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCe
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGAT 206 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~-~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~ 206 (381)
++|+||+..||.+.||+||+++|++||+|++ ++|+...++.++....+.+. ++..+..+-.+.+.+.+.+|++
T Consensus 1 mLyvv~TPIGNl~Dit~Ral~~L~~~d~i~~EDTR~t~kLL~~~~I~~~~~~------~~~hn~~~~~~~l~~~l~~g~~ 74 (276)
T TIGR00096 1 LLYVVTTPIGNLEDITRRALELLACVDLFAEEDTRTSKLLLHLGIIATPKAF------HIDNEFQEKQNLLAAKLEIGNN 74 (276)
T ss_pred CEEEECCCCcCHHHHhHHHHHHHHhCCEEEecCchhHHHHHHhcCCCCceEE------EecccHhHHHHHHHHHHHcCCc
Confidence 5899999999999999999999999999999 77888889988876555443 3444556667788888889999
Q ss_pred EEEEe-cCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHHh
Q 016852 207 VVRLK-GGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENA 285 (381)
Q Consensus 207 VvvL~-sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~l 285 (381)
|++++ .|-|++.++|..+++.+.+.|+.|.++||+|++.+|.+..|++-..+.. ..|.+ ++. .......+.+
T Consensus 75 valvSDAG~P~ISDPG~~LV~~~~~~~i~v~~ipG~sA~~~Al~~SG~~~~~f~F---~GFlp---~k~-~~r~~~l~~l 147 (276)
T TIGR00096 75 IAVSSDAGPPLISDPGHLLVACREKANIIVVPLPGAAALTAALCASGPATDRFFF---GGFLP---KKS-KRRQALKAYI 147 (276)
T ss_pred EEEEecCCCCCcCCccHHHHHHHHHCCCeEEcCChHHHHHHHHHhcCCCCCceEE---eeeCC---CCh-HHHHHHHHHH
Confidence 99998 9999999999999999999999999999999999999999998764221 11222 221 1222345566
Q ss_pred cCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccC---CCCCcEEEEEcC
Q 016852 286 ADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVE---ELVSPTLIIIGK 359 (381)
Q Consensus 286 ~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~---~~~~~~viiIg~ 359 (381)
.....++|+|..++++.++.+.+... ++ +.+++++..+|...|.++.+++.++.+.+.+. ..++..|+||+.
T Consensus 148 ~~~~~t~ifyEsp~Rl~~~L~~l~~~-~g-~r~i~~arELTK~~E~~~~g~~~e~~~~~~~~~~~~~kGE~vlvi~g 222 (276)
T TIGR00096 148 AEERTTVFFYESHHRLLTTLTDLNVF-LG-SERFVGAAELTKKESEYWFGTVGQLLPDITEDTNNRKGGEVILIING 222 (276)
T ss_pred hCCCCeEEEEECcHhHHHHHHHHHHh-cC-CceEEEEEecCCCceEEEeCCHHHHHHHHHhccCCCCCeEEEEEEeC
Confidence 77889999999999999999998775 33 57899999999999999999999999887643 357788888875
No 34
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=4e-19 Score=161.29 Aligned_cols=222 Identities=23% Similarity=0.260 Sum_probs=164.3
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHH-------HHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHH
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSND-------VLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSF 200 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~-------ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~ 200 (381)
++|+||.|.|+.+.||+|+++++++|.-|+-..+++-. +-+++ +++++..+. ...++-.+.|.+.
T Consensus 1 mlYlIGlGL~d~kDITlrGLeaVK~c~rVylEaYTSil~~~l~~~lEk~y--Gk~iilADR------emvEq~sd~il~~ 72 (272)
T KOG3123|consen 1 MLYLIGLGLGDEKDITLRGLEAVKKCARVYLEAYTSILGVGLDATLEKFY--GKEIILADR------EMVEQESDKILDE 72 (272)
T ss_pred CeEEEeccCCcccceehhhHHHHhhhheehHHHHHHHHHhhhhHHHHHHh--CceeEeccH------HHHHhhHHHHhhh
Confidence 58999999999999999999999999999876655311 11111 233333221 1123334556666
Q ss_pred HHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHH
Q 016852 201 AEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLF 280 (381)
Q Consensus 201 ~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~ 280 (381)
+.. .+|++|+-|||+...++..++-+.++.|++|+||...|-+++.-+ +|+.++++|.+.++.|.+-..|+...- ..
T Consensus 73 ad~-~dVa~LVVGdPfgATTHsDlvlRAk~~~ipv~vIHNASimNavG~-CGLqlY~fGetVSiv~ftd~wrP~Sfy-dk 149 (272)
T KOG3123|consen 73 ADK-EDVAFLVVGDPFGATTHSDLVLRAKELGIPVEVIHNASIMNAVGC-CGLQLYNFGETVSIVFFTDNWRPESFY-DK 149 (272)
T ss_pred hhh-cceEEEEecCcccccchhhhheehhhcCCCeEEEechHHHhhhcc-ceeeeeccCcEEEEEEEccCcCchhHH-HH
Confidence 644 599999999999999999999999999999999999999988754 999999999999988888766654321 12
Q ss_pred HHHHhcCCCCcEEEEcCC-------------------C--CHHHHHHHHHH----CC---CCCCceeeeEecCCCCCcEE
Q 016852 281 VAENAADPDSTLVVYMGL-------------------S--TLPSLALKLMH----HG---LPPHTPAAAIERGTTPQQRI 332 (381)
Q Consensus 281 l~~~l~~~~~tlVIl~~~-------------------~--~~~~Ia~~L~~----~G---~~~~t~v~v~e~lg~~dErI 332 (381)
+.++...+-+|+++++-. . ...+.++.|++ +| +.+||.++.+.|+|.++|+|
T Consensus 150 I~~Nr~~glHTLcLLDIkvkEqs~enl~rgrkiyeppRymsvn~a~~QlLei~e~~~~~~~~edT~~v~~~R~Gs~~q~i 229 (272)
T KOG3123|consen 150 IKENRQLGLHTLCLLDIKVKEQSVENLARGRKIYEPPRYMSVNEAAEQLLEIEEKRGEPAYTEDTLCVAVARVGSDDQKI 229 (272)
T ss_pred HHHhhhcCceeEEEEEEeeccHHHHHHhccccccCCchhhhHHHHHHHHHHHHHhhCCCCcCCCceEEEEEecCCCccee
Confidence 444555566788875431 1 12344555544 22 67899999999999999999
Q ss_pred EEEehhhHHHhhccCCCCCcEEEEEcCccc
Q 016852 333 VFSELKDLADKIGVEELVSPTLIIIGKVVS 362 (381)
Q Consensus 333 ~~~tL~eL~~~l~~~~~~~~~viiIg~~~~ 362 (381)
+.+|+.++... +.+.+.++++|+|....
T Consensus 230 ~~gt~~~l~~~--d~G~PLHslii~ge~h~ 257 (272)
T KOG3123|consen 230 VAGTIKDLAEV--DFGEPLHSLIIPGETHP 257 (272)
T ss_pred eheeHHhHhhc--ccCCCceeEEeecCcCh
Confidence 99999999986 45556679999996553
No 35
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=99.57 E-value=4.9e-14 Score=136.38 Aligned_cols=217 Identities=16% Similarity=0.215 Sum_probs=160.2
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhC-CCceEEEeccc---cCCCCCCHHHHHHHHHHHH
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVA-PNARLLYVGKT---AGYHSRTQEEIHELLLSFA 201 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~-~~~e~i~~~~~---~~~~~~~~eei~~~i~~~~ 201 (381)
.++|++||+|+|+.+.||+...++|++.|-++....-++. .+.+. ....+-++... ......-++.|++.+.+.+
T Consensus 2 ah~ItvVGLG~g~~d~L~lGi~k~lknqd~ly~RTkdHPv-iE~l~~e~~~f~~fD~iYE~heqFe~VYd~I~~~LveaA 80 (488)
T COG3956 2 AHTITVVGLGAGDKDQLTLGIYKLLKNQDNLYVRTKDHPV-IEELDEEGIKFSFFDDIYETHEQFEAVYDFIAADLVEAA 80 (488)
T ss_pred CceEEEEeeCCCchhhcchHHHHHHhccceEEEecCCCch-HHHHHhhcceeeehhHHHhhhhhHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999996554443 34343 33323222211 1111234677888888888
Q ss_pred HcCCeEEEEecCCCCCcCCHHHHHH-HHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHH
Q 016852 202 EVGATVVRLKGGDPLVFGRGGEEMD-FLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLF 280 (381)
Q Consensus 202 ~~Gk~VvvL~sGDP~~ys~~~~l~~-~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~ 280 (381)
++ |+|+..++|.|.+......++. +..+.++.|.|.||.|-+.+.+..+.++..++ ++++.+..-
T Consensus 81 ke-kdIvYAVPGHP~VAEktVqlL~e~~ek~ni~Vkilgg~SFiD~~fealkiDPveG-----~q~vDa~~l-------- 146 (488)
T COG3956 81 KE-KDIVYAVPGHPLVAEKTVQLLIEACEKENIKVKILGGQSFIDALFEALKIDPVEG-----FQIVDATDL-------- 146 (488)
T ss_pred cc-cceEEecCCCchhHHHHHHHHHHHHhccCceEEEeCcchhHHHHHHHhcCCcccC-----ceEeccchh--------
Confidence 65 8999999999999988776555 55566899999999999999999999998863 567765421
Q ss_pred HHHHhcCCCCcEEEEcCCC--CHHHHHHHHHHCCCCCCceeeeEecCCCCCcE-EEEEehhhHHHhhccCCCCCcEEEEE
Q 016852 281 VAENAADPDSTLVVYMGLS--TLPSLALKLMHHGLPPHTPAAAIERGTTPQQR-IVFSELKDLADKIGVEELVSPTLIII 357 (381)
Q Consensus 281 l~~~l~~~~~tlVIl~~~~--~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dEr-I~~~tL~eL~~~l~~~~~~~~~viiI 357 (381)
-..+.+-...+||....+ ....+.-.|+++ |+++++++++..+|..+|. +.+..|-||.+. ..+..++-++|
T Consensus 147 -~~~il~vr~hivItQVY~~miAs~vKltLmE~-ypDDyev~ivtaags~~ee~v~tvPLyELDr~---~ainnLTsVyV 221 (488)
T COG3956 147 -SNDILDVRLHIVITQVYDQMIASDVKLTLMEY-YPDDYEVYIVTAAGSENEESVRTVPLYELDRQ---SAINNLTSVYV 221 (488)
T ss_pred -hHHHHhhhhceeehhHHHHHHHHhHHHHHHHh-CCCCceEEEEEeccCCCccceeeecceeechh---hhhhhcceeec
Confidence 112222334555543333 245677888888 8999999999999999987 889999999886 25678888888
Q ss_pred cCccc
Q 016852 358 GKVVS 362 (381)
Q Consensus 358 g~~~~ 362 (381)
++...
T Consensus 222 P~ii~ 226 (488)
T COG3956 222 PPIIN 226 (488)
T ss_pred ccccc
Confidence 87654
No 36
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=82.28 E-value=9.4 Score=38.17 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=80.8
Q ss_pred HHHHHHhcCEEEE--cCC-CCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEe-cCCCCCcCCH
Q 016852 146 AMKVIQKADLLLY--DRL-VSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLK-GGDPLVFGRG 221 (381)
Q Consensus 146 A~~aL~~ADvVi~--~~~-~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~-sGDP~~ys~~ 221 (381)
....+.++|+|+. +.. +.+.+...+..+..++... . .+ ....+..+.|.+.++++..|+++. .=||++|+.-
T Consensus 54 ~~e~l~~iDVViIctPs~th~~~~~~~L~aG~NVV~s~-~--~h-~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~ 129 (324)
T TIGR01921 54 DEKHLDDVDVLILCMGSATDIPEQAPYFAQFANTVDSF-D--NH-RDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSIN 129 (324)
T ss_pred HHHhccCCCEEEEcCCCccCHHHHHHHHHcCCCEEECC-C--cc-cCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHH
Confidence 3445578998875 333 3334556666555555431 1 11 223455667777777666888877 5599999977
Q ss_pred HHHHHHHHhCCCcEEEE-cCchHHHHHHHhcCCCCccCcccceeEEecCC-------CCCCCCChHHHHHHhcCCCCcEE
Q 016852 222 GEEMDFLQQKGIQVKVI-PGITAASGIAAELGIPLTHRGVANSVRFLTGH-------SRKGGTDPLFVAENAADPDSTLV 293 (381)
Q Consensus 222 ~~l~~~l~~~gi~veVI-PGISS~~aaaA~lGipl~~~~~~~~v~ivs~h-------gr~~~~~~~~l~~~l~~~~~tlV 293 (381)
+.+.+.+--.|.....- ||+|--..-+.+ .++--+ +....+.. -+.+. .+ ++..........++
T Consensus 130 r~~~ea~lp~g~~yt~wG~g~s~ghs~a~~-~~~Gv~-----~a~~~tip~~dal~~v~~Ge-~~-~l~~~~~h~r~~~v 201 (324)
T TIGR01921 130 RVYGEAVLPKGQTYTFWGPGLSQGHSDAVR-RIDGVK-----KAVQYTLPSEDALEKARRGE-AP-ELTGKQTHKRQCFV 201 (324)
T ss_pred HHHHhccCCCCcceeccCCCcCchhhhhhc-ccCCcc-----cceEEEEehHHHHHHHHcCC-cc-ccccccceeeeEEE
Confidence 76666665556555433 777664333332 121111 11111111 00000 00 11122223344666
Q ss_pred EEcCCCCHHHHHHHHHH
Q 016852 294 VYMGLSTLPSLALKLMH 310 (381)
Q Consensus 294 Il~~~~~~~~Ia~~L~~ 310 (381)
+.......++|.+.++.
T Consensus 202 v~e~g~~~~~v~~~i~~ 218 (324)
T TIGR01921 202 VLKDGADHERVENEIRT 218 (324)
T ss_pred EecCCCCHHHHHHHHhh
Confidence 77777788888888875
No 37
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=75.35 E-value=7.1 Score=36.99 Aligned_cols=59 Identities=24% Similarity=0.250 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHH
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~a 246 (381)
...+++.+.+.+....+...+.+++|.|+++.....+++.+++.|+.+.+.-.-+-...
T Consensus 56 ~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~ 114 (238)
T TIGR03365 56 MTAEEVWQELKALGGGTPLHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQD 114 (238)
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHH
Confidence 45678888777665444567888999999997788999999999999999888776554
No 38
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=71.47 E-value=14 Score=31.18 Aligned_cols=47 Identities=30% Similarity=0.354 Sum_probs=36.8
Q ss_pred cCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcC--EEEEcC
Q 016852 98 LQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKAD--LLLYDR 160 (381)
Q Consensus 98 ~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~AD--vVi~~~ 160 (381)
++++|++.+|+. ...+.+||+|.-+.=-++.+|.+.+++-+ ++..+.
T Consensus 49 l~~eEle~~lee----------------~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT 97 (121)
T COG1504 49 LALEELEELLEE----------------GPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPT 97 (121)
T ss_pred cCHHHHHHHHhc----------------CCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCC
Confidence 677889998887 47788999998777778899998888755 555543
No 39
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=66.53 E-value=15 Score=34.28 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCch
Q 016852 186 HSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGIT 242 (381)
Q Consensus 186 ~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGIS 242 (381)
.....++|.+.+.+.- .+..-+.++.|+|+.......+++.+++.|+++.+--+-+
T Consensus 54 ~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngt 109 (212)
T COG0602 54 TPMSADEILADIKSLG-YKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGT 109 (212)
T ss_pred CccCHHHHHHHHHhcC-CCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCC
Confidence 3345677777665532 2334577899999888778899999999999988877544
No 40
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=64.68 E-value=87 Score=31.37 Aligned_cols=107 Identities=20% Similarity=0.259 Sum_probs=55.6
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEE-cCCCC---------HHHHhhhC-CCceEEEecccc-----CCCCCC
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVS---------NDVLDLVA-PNARLLYVGKTA-----GYHSRT 189 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~-~~~~~---------~~ll~~l~-~~~e~i~~~~~~-----~~~~~~ 189 (381)
-.+|+++| |-++ .-+.+|+++|++||+|+. +...- +.+.+.+. ..++++++...+ ......
T Consensus 166 v~~V~~~~--~~~~-~a~~eaveAI~~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~~~ap~i~v~n~~~~~g~~t~~~~ 242 (323)
T COG0391 166 VHRVRLEG--PEKP-SAAPEAVEAIKEADLIVIGPGSLFTSILPILLLPGIAEALRETVAPIVYVCNLMTQAGKETDGLS 242 (323)
T ss_pred ceEEEEec--CCCC-CCCHHHHHHHHhCCEEEEcCCccHhhhchhhchhHHHHHHHhCCCCEEEeccCCCCCCccccccc
Confidence 46788887 3233 467899999999997765 43211 11222232 234555532211 122234
Q ss_pred HHHHHHHHHHHHHcC-CeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEc
Q 016852 190 QEEIHELLLSFAEVG-ATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIP 239 (381)
Q Consensus 190 ~eei~~~i~~~~~~G-k~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIP 239 (381)
.++-+..+.+++.+. -+++++-.-|+-.- .+.+++.+.+.+++..+
T Consensus 243 ~~d~i~~i~~~~g~~~iD~vivd~~~~~~~----~~~~~~~~~~~~V~~~~ 289 (323)
T COG0391 243 VEDHIAALAQHYGAFVIDAVIVDNDDVEDE----DLIRYVEEKGLEVEIDP 289 (323)
T ss_pred HHHHHHHHHHHhCcccCcEEEECCCCccHH----HHHHHhhhcCceeEech
Confidence 555556666666444 35566555554221 12244455455555554
No 41
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=64.43 E-value=56 Score=27.65 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=33.7
Q ss_pred ccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEE
Q 016852 97 ALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY 158 (381)
Q Consensus 97 ~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~ 158 (381)
.++.++++.+|+. ...+.+||+|.-..-.++++..+.+++..+-+-
T Consensus 45 ~l~~~~l~~ll~~----------------~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve 90 (117)
T cd05126 45 GLQPEELEELLEE----------------GVEVIVIGTGQSGALKVPPETVEKLEKRGVEVL 90 (117)
T ss_pred cCCHHHHHHHHhc----------------CCCEEEEcCCCCccccCCHHHHHHHHhcCCEEE
Confidence 6777788888876 366999999975443578888888877665544
No 42
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=60.58 E-value=77 Score=24.51 Aligned_cols=84 Identities=15% Similarity=0.111 Sum_probs=46.5
Q ss_pred chHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCH
Q 016852 142 LTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRG 221 (381)
Q Consensus 142 LTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~ 221 (381)
+|++.++.+.+.+.++.|.|.........-+++..+ +.+++.+.+. ....+++|++..... ...
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~i-----------p~~~~~~~~~-~~~~~~~vvl~c~~g----~~a 64 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINI-----------PLDELRDRLN-ELPKDKEIIVYCAVG----LRG 64 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeC-----------CHHHHHHHHH-hcCCCCcEEEEcCCC----hhH
Confidence 355666666677777888876554332212233322 3344433332 234566777775432 223
Q ss_pred HHHHHHHHhCCCcEEEEcCc
Q 016852 222 GEEMDFLQQKGIQVKVIPGI 241 (381)
Q Consensus 222 ~~l~~~l~~~gi~veVIPGI 241 (381)
....+.|+..|+++.++.|-
T Consensus 65 ~~~a~~L~~~G~~v~~l~GG 84 (90)
T cd01524 65 YIAARILTQNGFKVKNLDGG 84 (90)
T ss_pred HHHHHHHHHCCCCEEEecCC
Confidence 44556778888888888774
No 43
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=60.33 E-value=30 Score=30.98 Aligned_cols=55 Identities=20% Similarity=0.137 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchH
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA 243 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS 243 (381)
.+.+++.+.+.+.. ..-+.+.+..|+|+++.....+++.+++.|+.+.+...-+-
T Consensus 47 ~~~~~i~~~i~~~~-~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~~ 101 (191)
T TIGR02495 47 IEVEFLLEFLRSRQ-GLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGSN 101 (191)
T ss_pred CCHHHHHHHHHHhc-CCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45677877776542 22345677899999988777889999989998888866553
No 44
>PRK11914 diacylglycerol kinase; Reviewed
Probab=56.82 E-value=28 Score=33.88 Aligned_cols=59 Identities=27% Similarity=0.420 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCc
Q 016852 193 IHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLT 256 (381)
Q Consensus 193 i~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~ 256 (381)
..+.+.+....+-+++++..|| |+..+.+..+...++++=++|+-|. +.++-.+|+|..
T Consensus 53 ~~~~a~~~~~~~~d~vvv~GGD----GTi~evv~~l~~~~~~lgiiP~GT~-NdfAr~lg~~~~ 111 (306)
T PRK11914 53 ARHLVAAALAKGTDALVVVGGD----GVISNALQVLAGTDIPLGIIPAGTG-NDHAREFGIPTG 111 (306)
T ss_pred HHHHHHHHHhcCCCEEEEECCc----hHHHHHhHHhccCCCcEEEEeCCCc-chhHHHcCCCCC
Confidence 3334444445666889999999 7777888887777889999998554 555577898753
No 45
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=55.52 E-value=1.6e+02 Score=29.13 Aligned_cols=29 Identities=38% Similarity=0.428 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCCCcCC--HHHHHHHHHhCC
Q 016852 204 GATVVRLKGGDPLVFGR--GGEEMDFLQQKG 232 (381)
Q Consensus 204 Gk~VvvL~sGDP~~ys~--~~~l~~~l~~~g 232 (381)
+-+.+++++|||++.+. ..++++.+++.+
T Consensus 136 ~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~ 166 (321)
T TIGR03822 136 EIWEVILTGGDPLVLSPRRLGDIMARLAAID 166 (321)
T ss_pred CccEEEEeCCCcccCCHHHHHHHHHHHHhCC
Confidence 55678899999999753 446777777654
No 46
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=55.50 E-value=78 Score=31.53 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=20.4
Q ss_pred CCeEEEEecCCCCCcCC--HHHHHHHHHhC
Q 016852 204 GATVVRLKGGDPLVFGR--GGEEMDFLQQK 231 (381)
Q Consensus 204 Gk~VvvL~sGDP~~ys~--~~~l~~~l~~~ 231 (381)
|-+-+++++|||++... ..++++.+++.
T Consensus 159 ~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i 188 (331)
T TIGR00238 159 EIIEILISGGDPLMAKDHELEWLLKRLEEI 188 (331)
T ss_pred CcCEEEEECCccccCCHHHHHHHHHHHHhc
Confidence 44668889999998875 44667777653
No 47
>PRK00861 putative lipid kinase; Reviewed
Probab=54.59 E-value=31 Score=33.45 Aligned_cols=55 Identities=35% Similarity=0.431 Sum_probs=43.3
Q ss_pred HHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCc
Q 016852 197 LLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLT 256 (381)
Q Consensus 197 i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~ 256 (381)
+.+...++.++++++.|| |+..+.+..+...+..+=++|+ .+.+-++-.+|+|.+
T Consensus 50 a~~~~~~~~d~vv~~GGD----GTl~evv~~l~~~~~~lgviP~-GTgNdfAr~lgi~~~ 104 (300)
T PRK00861 50 AQEAIERGAELIIASGGD----GTLSAVAGALIGTDIPLGIIPR-GTANAFAAALGIPDT 104 (300)
T ss_pred HHHHHhcCCCEEEEECCh----HHHHHHHHHHhcCCCcEEEEcC-CchhHHHHHcCCCCC
Confidence 333445667889999999 8888888888777889999998 566777788999854
No 48
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=54.21 E-value=46 Score=35.98 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=41.4
Q ss_pred HHHhcCCCCcEEEEcCCC----CHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhh
Q 016852 282 AENAADPDSTLVVYMGLS----TLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKI 344 (381)
Q Consensus 282 ~~~l~~~~~tlVIl~~~~----~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l 344 (381)
+..++.....+|.+.... .-..+++.|.+.|+. .-+-++|.||+.|-.++.+++...+
T Consensus 546 l~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~-----~~v~~lglpd~fi~hg~~~el~~~~ 607 (627)
T COG1154 546 LLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGIL-----VPVLNLGLPDEFIDHGSPEELLAEL 607 (627)
T ss_pred HHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCCC-----CceEEecCChHhhccCCHHHHHHHc
Confidence 445555555555554432 346799999998764 2346899999999999999998863
No 49
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=53.49 E-value=70 Score=33.45 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=32.6
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCC
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVS 163 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~ 163 (381)
++-|.+|-.|||....+|+-|-......-+|++..-+.
T Consensus 154 KPGvvlvTSGPGATNvvtp~ADAlaDg~PlVvftGQVp 191 (675)
T KOG4166|consen 154 KPGVVLVTSGPGATNVVTPLADALADGVPLVVFTGQVP 191 (675)
T ss_pred CCcEEEEecCCCcccccchhhHHhhcCCcEEEEecccc
Confidence 56788999999999999999999999999888755444
No 50
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=52.44 E-value=1.8e+02 Score=28.90 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=19.0
Q ss_pred CCeEEEEecCCCCCcCC--HHHHHHHHHh
Q 016852 204 GATVVRLKGGDPLVFGR--GGEEMDFLQQ 230 (381)
Q Consensus 204 Gk~VvvL~sGDP~~ys~--~~~l~~~l~~ 230 (381)
+-+.+++++|||+.... ..++++.+..
T Consensus 142 ~i~~VvltGGEPL~~~d~~L~~ll~~l~~ 170 (321)
T TIGR03821 142 EINEVILSGGDPLMAKDHRLDWLLNLLEQ 170 (321)
T ss_pred CCCEEEEeCcccccCCchHHHHHHHHHHh
Confidence 45668899999998765 4456655554
No 51
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=52.12 E-value=51 Score=33.12 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCch
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGIT 242 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGIS 242 (381)
...+++.+.|.+..+.|-..+.+..|+|++.....++++.+++.|+.+.++-.-+
T Consensus 46 ~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 46 LSTEEWIRVLREARALGALQLHFSGGEPLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCccCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 3456666666555555656677789999999888889999998888887775544
No 52
>KOG4131 consensus Ngg1-interacting factor 3 protein NIF3L1 [General function prediction only]
Probab=51.90 E-value=99 Score=29.75 Aligned_cols=105 Identities=20% Similarity=0.244 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhhhccc----CCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEE
Q 016852 103 LKKLLQVLREKREEDRV----GAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLY 178 (381)
Q Consensus 103 l~~~l~~~~~~~~~~~~----~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~ 178 (381)
+.++|++.|+ ++... ..++....+|.-||++.|...-+- +. .+||+++.+.+.+..+|++...+..++-
T Consensus 160 ~~~~l~~ik~--~l~~v~val~~g~~~~~~i~~V~vcAgsg~svl-k~----~~adly~TGEmSHH~vL~~~~~g~sVil 232 (272)
T KOG4131|consen 160 VVEILKRIKR--GLSSVRVALAVGHTLESQIKKVAVCAGSGSSVL-KG----VDADLYITGEMSHHDVLDAAANGISVIL 232 (272)
T ss_pred HHHHHHHHHh--cCCeEEEeeccCCccccceeEEEEeeccCccee-cc----ccccEEEeccccHHHHHHHHHcCCeEEE
Confidence 6677777643 32211 223334566667776665443321 11 4589999888877788998877777775
Q ss_pred eccccCCCCCCHHHHHHHHHHHHHcCCeEEEEe-cCCCC
Q 016852 179 VGKTAGYHSRTQEEIHELLLSFAEVGATVVRLK-GGDPL 216 (381)
Q Consensus 179 ~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~-sGDP~ 216 (381)
.......+.. ..++.+.+...+.+ +.|.+=. --||+
T Consensus 233 c~HSNtERgf-L~d~~~kl~~~l~~-~~v~vS~~D~DPl 269 (272)
T KOG4131|consen 233 CEHSNTERGF-LSDLCDKLASSLEE-EEVIVSKMDKDPL 269 (272)
T ss_pred ecCCCccchh-HHHHHHHHHhhCCc-ceEEEeecCCCCc
Confidence 5432222222 23466667666643 4443322 45554
No 53
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=50.15 E-value=51 Score=32.39 Aligned_cols=59 Identities=32% Similarity=0.385 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCc-EEEEcCchHHHHHHHhcCCCCc
Q 016852 193 IHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQ-VKVIPGITAASGIAAELGIPLT 256 (381)
Q Consensus 193 i~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~-veVIPGISS~~aaaA~lGipl~ 256 (381)
..+...+....+-++++...|| |+..+.+..+.+.+.+ +=++|+- +.+.++-.+|+|..
T Consensus 47 a~~~a~~a~~~~~D~via~GGD----GTv~evingl~~~~~~~LgilP~G-T~NdfAr~Lgip~~ 106 (301)
T COG1597 47 AIEIAREAAVEGYDTVIAAGGD----GTVNEVANGLAGTDDPPLGILPGG-TANDFARALGIPLD 106 (301)
T ss_pred HHHHHHHHHhcCCCEEEEecCc----chHHHHHHHHhcCCCCceEEecCC-chHHHHHHcCCCch
Confidence 3344445555677899999999 8888899988888777 9999984 56777788999985
No 54
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=49.76 E-value=58 Score=32.36 Aligned_cols=53 Identities=26% Similarity=0.366 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcC
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPG 240 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPG 240 (381)
.+.+++.+.+.+..+-|-..+.+..|+|++.-...++++.+++.|+.+.+.--
T Consensus 37 l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~ii~~~~~~g~~~~l~TN 89 (358)
T TIGR02109 37 LTTEEWTDVLTQAAELGVLQLHFSGGEPLARPDLVELVAHARRLGLYTNLITS 89 (358)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEeCccccccccHHHHHHHHHHcCCeEEEEeC
Confidence 34566655555555556566778899999988888899999988887766543
No 55
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=49.35 E-value=52 Score=32.52 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=43.5
Q ss_pred cCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEe--
Q 016852 134 TGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLK-- 211 (381)
Q Consensus 134 iGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~-- 211 (381)
.||.+ -.-+++++++|++||+|+...... +....+. + ...++.+. +++ ..|+.++
T Consensus 165 ~g~e~-a~a~peal~AI~~AD~IIlGPgsp--~TSI~P~----L-----------lVpgIreA----L~~-a~vV~Vspi 221 (297)
T TIGR01819 165 RGAEK-ASIAPKVLEAIRKEDNILIGPSNP--ITSIGPI----L-----------SLPGIREA----LRD-KKVVAVSPI 221 (297)
T ss_pred CCCCC-CCCCHHHHHHHHhCCEEEECCCcc--HHHhhhh----c-----------CchhHHHH----HHc-CCEEEEccC
Confidence 34433 457899999999999887643221 1222211 0 11234443 444 5677665
Q ss_pred cCCCCCcCCHHHHHHHH
Q 016852 212 GGDPLVFGRGGEEMDFL 228 (381)
Q Consensus 212 sGDP~~ys~~~~l~~~l 228 (381)
.|+--+.|++..++..+
T Consensus 222 ig~~~v~GpA~~~m~a~ 238 (297)
T TIGR01819 222 VGNAPVSGPAGKLMAAV 238 (297)
T ss_pred cCCCcCCChHHHHHHHc
Confidence 67778999998888765
No 56
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=49.24 E-value=42 Score=28.02 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHH-HHcCCeEEEEecCCCCCcCCHHHHHHHHHhC---CCcEEEEcCchH----HHHHHHhcC
Q 016852 188 RTQEEIHELLLSF-AEVGATVVRLKGGDPLVFGRGGEEMDFLQQK---GIQVKVIPGITA----ASGIAAELG 252 (381)
Q Consensus 188 ~~~eei~~~i~~~-~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~---gi~veVIPGISS----~~aaaA~lG 252 (381)
...+++.+.+... ...|...+.+..|||..+.....++..+.+. ++.+.+.-..+- .......+|
T Consensus 28 ~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~ 100 (166)
T PF04055_consen 28 MSPEEILEEIKELKQDKGVKEIFFGGGEPTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLG 100 (166)
T ss_dssp CHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhHhcCCcEEEEeecCCCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcC
Confidence 3567787888777 5777788888999999998888777766654 666665554444 234444445
No 57
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=47.99 E-value=1.5e+02 Score=28.49 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=64.5
Q ss_pred EEEEEecCCCCcccchHHHHHHHH----hcCEEEEcCCCCHHHHh---hhCCCceEEEec-----cccCCCCCCHHHHHH
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQ----KADLLLYDRLVSNDVLD---LVAPNARLLYVG-----KTAGYHSRTQEEIHE 195 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~----~ADvVi~~~~~~~~ll~---~l~~~~e~i~~~-----~~~~~~~~~~eei~~ 195 (381)
+|-+||+|- |--.-.+.++ ..+.++..++..+...+ .+..... -.+. .+........+.+.+
T Consensus 2 ~vgiVGcGa-----IG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~-s~ide~~~~~DlvVEaAS~~Av~e 75 (255)
T COG1712 2 KVGIVGCGA-----IGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCV-SDIDELIAEVDLVVEAASPEAVRE 75 (255)
T ss_pred eEEEEeccH-----HHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCcc-ccHHHHhhccceeeeeCCHHHHHH
Confidence 577899884 3333445555 56777754444443332 2221110 0000 000112346677888
Q ss_pred HHHHHHHcCCeEEEEecC---CCCCcCCHHHHHHHHHhCCCcEEEEcC-chHHHHHHHh
Q 016852 196 LLLSFAEVGATVVRLKGG---DPLVFGRGGEEMDFLQQKGIQVKVIPG-ITAASGIAAE 250 (381)
Q Consensus 196 ~i~~~~~~Gk~VvvL~sG---DP~~ys~~~~l~~~l~~~gi~veVIPG-ISS~~aaaA~ 250 (381)
+..+.+++|.++.+++.| ||.+..+ +.+.++.-|-.+.+.+| |..+.++.|.
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~l~er---l~~lak~~~~rv~~pSGAiGGlD~l~aa 131 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEGLRER---LRELAKCGGARVYLPSGAIGGLDALAAA 131 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChHHHHH---HHHHHhcCCcEEEecCccchhHHHHHHh
Confidence 888999999999999877 5544433 23344445779999988 4556666554
No 58
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=47.74 E-value=56 Score=33.87 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=30.9
Q ss_pred EEEEEecCCC--CcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCC
Q 016852 128 NVYLVGTGPG--DPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPN 173 (381)
Q Consensus 128 ~l~lVGiGPG--d~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~ 173 (381)
+++++|.|.| +...-...+...++.||.|..-+..+..++..+...
T Consensus 150 pv~l~gqsiGPf~~~~~r~l~r~vl~~~~~ItvRD~~S~~~Lk~lGv~ 197 (426)
T PRK10017 150 PLYMIGHSVGPFQDEQFNQLANYVFGHCDALILRESVSLDLMKRSNIT 197 (426)
T ss_pred CEEEECCcCCCcCCHHHHHHHHHHHhcCCEEEEccHHHHHHHHHhCCC
Confidence 3555555544 444556677889999999999666666666655443
No 59
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=47.42 E-value=81 Score=34.45 Aligned_cols=93 Identities=23% Similarity=0.287 Sum_probs=53.3
Q ss_pred HHHHHHhcCEEEEcCCCCH-HHHhhhC---CCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCH
Q 016852 146 AMKVIQKADLLLYDRLVSN-DVLDLVA---PNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRG 221 (381)
Q Consensus 146 A~~aL~~ADvVi~~~~~~~-~ll~~l~---~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~ 221 (381)
..++|++-|++++..+.+- .+++++. .+..++-+... .++...--.|.+.+.++++.||.|.+|+-=-.=|-.-.
T Consensus 336 ~F~aIre~DiLlhHPYeSF~~Vv~fl~qAA~DP~VLAIKqT-LYRt~~dSpIV~ALi~AA~nGKqVtvlVELkARFDEE~ 414 (696)
T COG0855 336 IFDAIREGDILLHHPYESFEPVVEFLRQAAADPDVLAIKQT-LYRTSKDSPIVRALIDAAENGKQVTVLVELKARFDEEA 414 (696)
T ss_pred HHHHHhhcCeEEECchhhhHHHHHHHHHhhcCCCeEEEEEE-EEecCCCCHHHHHHHHHHHcCCeEEEEEEEhhhcChhh
Confidence 6789999999999766553 2455553 23344332111 11111223688889999999999999985433332211
Q ss_pred H-HHHHHHHhCCCcEEEEcCc
Q 016852 222 G-EEMDFLQQKGIQVKVIPGI 241 (381)
Q Consensus 222 ~-~l~~~l~~~gi~veVIPGI 241 (381)
. .-.+.|.++| ++||=|+
T Consensus 415 NI~WAk~LE~AG--vhVvyG~ 433 (696)
T COG0855 415 NIHWAKRLERAG--VHVVYGV 433 (696)
T ss_pred hhHHHHHHHhCC--cEEEecc
Confidence 1 2245666663 4455444
No 60
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=46.85 E-value=72 Score=30.87 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCC-cEEEEcC
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGI-QVKVIPG 240 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi-~veVIPG 240 (381)
.+.+++.+.+......|-+-+.+..|.|++.....++++.+++.|+ .+.+.--
T Consensus 40 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~~l~~~g~~~v~i~TN 93 (302)
T TIGR02668 40 LSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIRRIKDYGIKDVSMTTN 93 (302)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECcccccccCHHHHHHHHHhCCCceEEEEcC
Confidence 4567776655555555666677899999999988889998888887 7776653
No 61
>PRK13337 putative lipid kinase; Reviewed
Probab=46.11 E-value=67 Score=31.24 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=38.7
Q ss_pred HHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhC--CCcEEEEcCchHHHHHHHhcCCCCc
Q 016852 199 SFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQK--GIQVKVIPGITAASGIAAELGIPLT 256 (381)
Q Consensus 199 ~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~--gi~veVIPGISS~~aaaA~lGipl~ 256 (381)
+...++.++++++.|| |+..+.+..+... ...+=++|+- +.+.++-.+|+|.+
T Consensus 52 ~~~~~~~d~vvv~GGD----GTl~~vv~gl~~~~~~~~lgiiP~G-T~NdfAr~lgi~~~ 106 (304)
T PRK13337 52 RAVERKFDLVIAAGGD----GTLNEVVNGIAEKENRPKLGIIPVG-TTNDFARALHVPRD 106 (304)
T ss_pred HHHhcCCCEEEEEcCC----CHHHHHHHHHhhCCCCCcEEEECCc-CHhHHHHHcCCCCC
Confidence 3445666899999999 7777777766543 4578999985 45666777898854
No 62
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=46.03 E-value=56 Score=27.82 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=25.9
Q ss_pred CCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcC
Q 016852 204 GATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPG 240 (381)
Q Consensus 204 Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPG 240 (381)
.-++++|++||- -...+++.+++.|.+|.++.=
T Consensus 99 ~~d~ivLvSgD~----Df~~~i~~lr~~G~~V~v~~~ 131 (149)
T cd06167 99 RIDTIVLVSGDS----DFVPLVERLRELGKRVIVVGF 131 (149)
T ss_pred CCCEEEEEECCc----cHHHHHHHHHHcCCEEEEEcc
Confidence 447899999995 456778888988999887753
No 63
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=43.85 E-value=93 Score=32.09 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=72.1
Q ss_pred ccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhh--C--C
Q 016852 97 ALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLV--A--P 172 (381)
Q Consensus 97 ~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l--~--~ 172 (381)
..+.++||.+..++ ......++.+++|+-|..+.+-....-+ ++.|..+....+...+.+ . .
T Consensus 223 ~p~~d~lK~lgAA~----------Atsgs~~m~Hi~GvTPEa~~~~~a~~~~----~e~i~i~~~dl~~~~~~l~~~~~~ 288 (400)
T PF04412_consen 223 RPSEDDLKALGAAM----------ATSGSVAMFHIVGVTPEAPTLEAAFGGK----AERITITDADLEEVYEELNTAGDE 288 (400)
T ss_pred CCCHHHHHHHhhhh----------hcccceeeEEEeCCCCCCCcchhhhcCC----ceEEEeCHHHHHHHHHHhccCCCC
Confidence 46777888888773 2233468999999999776554333222 677766554434444444 1 2
Q ss_pred CceEEEeccccCCCCCCHHHHHHHHHHHHHcCCe----EEEEecCCCCCcCCHHH--HHHHHHhCCCcEEEEcCc
Q 016852 173 NARLLYVGKTAGYHSRTQEEIHELLLSFAEVGAT----VVRLKGGDPLVFGRGGE--EMDFLQQKGIQVKVIPGI 241 (381)
Q Consensus 173 ~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~----VvvL~sGDP~~ys~~~~--l~~~l~~~gi~veVIPGI 241 (381)
+..++.+| +.....+|+.+ |.++++ |++ +-+...=.+.++..... +++.|++. .++|+.+.
T Consensus 289 ~~D~V~lG----cPH~S~~El~~-ia~ll~-gr~~~~~~~~~i~t~~~v~~~a~~~G~~~~le~~--G~~iv~dT 355 (400)
T PF04412_consen 289 KVDLVALG----CPHLSLEELRE-IAELLE-GRKVHPNVPLWITTSRAVYELAERMGYVERLEKA--GVQIVTDT 355 (400)
T ss_pred CCCEEEEC----CCCCCHHHHHH-HHHHHh-CCCCCCCceEEEECCHHHHHHHHhCCHHHHHHHc--CCEEEccc
Confidence 34555553 55567777754 545553 333 44444444566666655 66666666 56667665
No 64
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=43.24 E-value=1.1e+02 Score=31.79 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=47.7
Q ss_pred CCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEe-cCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHH
Q 016852 171 APNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLK-GGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAA 244 (381)
Q Consensus 171 ~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~-sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~ 244 (381)
..+++++.+++...+.....+.+++.+.+.+.+ -++++|+ .|--.+-. ...+++..++.|++|-|=|=..-|
T Consensus 111 s~nQQllRvD~Ee~~~~~~~~~ll~~~~~~l~~-~~~vVLSDY~KG~L~~-~q~~I~~ar~~~~pVLvDPKg~Df 183 (467)
T COG2870 111 SRNQQLLRLDFEEKFPIEDENKLLEKIKNALKS-FDALVLSDYAKGVLTN-VQKMIDLAREAGIPVLVDPKGKDF 183 (467)
T ss_pred cccceEEEecccccCcchhHHHHHHHHHHHhhc-CCEEEEeccccccchh-HHHHHHHHHHcCCcEEECCCCcch
Confidence 345666666554444445566777888777744 4777776 77654544 678888889888888777755443
No 65
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=42.53 E-value=37 Score=28.69 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=38.5
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhc
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAEL 251 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~l 251 (381)
|+|++.++|-...+- ...+++.|++.|++|.++---++...+-...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~ 46 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPEG 46 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHHG
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhhc
Confidence 588999999888887 8889999999999999999988887777666
No 66
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=42.06 E-value=1.2e+02 Score=29.77 Aligned_cols=54 Identities=33% Similarity=0.432 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHh-CCC-cEEEEcCc
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQ-KGI-QVKVIPGI 241 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~-~gi-~veVIPGI 241 (381)
.+.+++.+.+....+.|-+.+.++.|+|++.-...++++.+++ .|+ .+.+.---
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~~gi~~v~itTNG 98 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALPGIEDIALTTNG 98 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhcCCCCeEEEEeCc
Confidence 4567777766666666767788899999999888888888776 467 67665443
No 67
>PRK06703 flavodoxin; Provisional
Probab=41.84 E-value=1.1e+02 Score=26.26 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=41.8
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcC--EEEEcCCCCHHHHhhhCCCceEEEecccc---CCCCCCHHHHHHHHHHHH
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKAD--LLLYDRLVSNDVLDLVAPNARLLYVGKTA---GYHSRTQEEIHELLLSFA 201 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~AD--vVi~~~~~~~~ll~~l~~~~e~i~~~~~~---~~~~~~~eei~~~i~~~~ 201 (381)
.-+.+.+..-|+.+.+-.+..+.|+... +-+.+-.... ..+ +. +...+.++... +........+++.+....
T Consensus 3 kv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~-~~~-l~-~~d~viigspt~~~g~~p~~~~~f~~~l~~~~ 79 (151)
T PRK06703 3 KILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMD-AEE-LL-AYDGIILGSYTWGDGDLPYEAEDFHEDLENID 79 (151)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCC-HHH-Hh-cCCcEEEEECCCCCCcCcHHHHHHHHHHhcCC
Confidence 3455668888888877777767776553 3333211110 011 22 22233332211 111112233334333222
Q ss_pred HcCCeEEEEecCCCC
Q 016852 202 EVGATVVRLKGGDPL 216 (381)
Q Consensus 202 ~~Gk~VvvL~sGDP~ 216 (381)
..++.++++.+||..
T Consensus 80 l~~k~~~vfg~g~~~ 94 (151)
T PRK06703 80 LSGKKVAVFGSGDTA 94 (151)
T ss_pred CCCCEEEEEccCCCC
Confidence 357888888889875
No 68
>PRK13059 putative lipid kinase; Reviewed
Probab=41.64 E-value=88 Score=30.36 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=40.8
Q ss_pred HHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhC--CCcEEEEcCchHHHHHHHhcCCCCc
Q 016852 198 LSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQK--GIQVKVIPGITAASGIAAELGIPLT 256 (381)
Q Consensus 198 ~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~--gi~veVIPGISS~~aaaA~lGipl~ 256 (381)
.+.+.++.++++++.|| |+..+.+..+.+. ++++=|||+ .+.+-++-.+|+|.+
T Consensus 50 ~~~~~~~~d~vi~~GGD----GTv~evv~gl~~~~~~~~lgviP~-GTgNdfAr~lgi~~~ 105 (295)
T PRK13059 50 FKDIDESYKYILIAGGD----GTVDNVVNAMKKLNIDLPIGILPV-GTANDFAKFLGMPTD 105 (295)
T ss_pred HHHhhcCCCEEEEECCc----cHHHHHHHHHHhcCCCCcEEEECC-CCHhHHHHHhCCCCC
Confidence 34445677899999999 8888888877643 578999998 556677777898754
No 69
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=41.61 E-value=1.3e+02 Score=30.59 Aligned_cols=116 Identities=23% Similarity=0.310 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHH--HHHHHHHhCCC---------cEEEEcC-chHHHHHHHhcCCC-C
Q 016852 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGG--EEMDFLQQKGI---------QVKVIPG-ITAASGIAAELGIP-L 255 (381)
Q Consensus 189 ~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~--~l~~~l~~~gi---------~veVIPG-ISS~~aaaA~lGip-l 255 (381)
.++..+++|.+... -+=|++++|||+.-+... +++..|++-.. -..++|. |+ ..++..++-. +
T Consensus 145 ~~~~al~YIa~hPe--I~eVllSGGDPL~ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt--~~L~~~l~~~~~ 220 (369)
T COG1509 145 EWDKALDYIAAHPE--IREVLLSGGDPLSLSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRIT--DELCEILGKSRK 220 (369)
T ss_pred HHHHHHHHHHcCch--hheEEecCCCccccCHHHHHHHHHHHhcCCceeEEEeecccceechhhcc--HHHHHHHhccCc
Confidence 44555555544331 234889999999998665 56777765421 1112332 33 3444444442 2
Q ss_pred ccCcccceeEEec--CCCCCCCCChHHHHHHhcCCCCcE----EEEcCCCC----HHHHHHHHHHCCCCC
Q 016852 256 THRGVANSVRFLT--GHSRKGGTDPLFVAENAADPDSTL----VVYMGLST----LPSLALKLMHHGLPP 315 (381)
Q Consensus 256 ~~~~~~~~v~ivs--~hgr~~~~~~~~l~~~l~~~~~tl----VIl~~~~~----~~~Ia~~L~~~G~~~ 315 (381)
. +.+++ .|.++-........+.+.+.+-++ |++.+.++ +.++...|.+.|..+
T Consensus 221 ~-------v~~~tH~NHp~Eit~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~P 283 (369)
T COG1509 221 P-------VWLVTHFNHPNEITPEAREACAKLRDAGVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVKP 283 (369)
T ss_pred e-------EEEEcccCChhhcCHHHHHHHHHHHHcCceeecchheecccCCCHHHHHHHHHHHHHcCCcc
Confidence 1 32322 243332222222233444444333 45555543 577888888888765
No 70
>PRK05569 flavodoxin; Provisional
Probab=41.46 E-value=2.1e+02 Score=23.97 Aligned_cols=102 Identities=10% Similarity=0.006 Sum_probs=47.1
Q ss_pred EEEEecCCCCcccchHHHHHHHHhcC--EEEEcCCCCHHHHhhhCCCceEEEeccccCCCCC----CHHHHHHHHHHHHH
Q 016852 129 VYLVGTGPGDPDLLTLKAMKVIQKAD--LLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSR----TQEEIHELLLSFAE 202 (381)
Q Consensus 129 l~lVGiGPGd~elLTlkA~~aL~~AD--vVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~----~~eei~~~i~~~~~ 202 (381)
+.+-+.+-||.+.|-.+..+-+++.+ +-+.+-.... ..+. . +.+.+.++.+.-.... ....+++.+.....
T Consensus 5 ~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~-~~~~-~-~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~ 81 (141)
T PRK05569 5 SIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAK-VEDV-L-EADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPN 81 (141)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCC-HHHH-h-hCCEEEEECCCcCCCcCChHHHHHHHHHhhccCc
Confidence 44557777787777777777776544 3333211110 1111 1 3344544433211111 12344444432223
Q ss_pred cCCeEEEEecCCCCCcCCH-HHHHHHHHhCCCc
Q 016852 203 VGATVVRLKGGDPLVFGRG-GEEMDFLQQKGIQ 234 (381)
Q Consensus 203 ~Gk~VvvL~sGDP~~ys~~-~~l~~~l~~~gi~ 234 (381)
+||.|+++.++.=. ++.. ..+.+.++..|++
T Consensus 82 ~~K~v~~f~t~g~~-~~~~~~~~~~~l~~~g~~ 113 (141)
T PRK05569 82 ENKKCILFGSYGWD-NGEFMKLWKDRMKDYGFN 113 (141)
T ss_pred CCCEEEEEeCCCCC-CCcHHHHHHHHHHHCCCe
Confidence 68899888754211 2222 2344455555443
No 71
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=41.31 E-value=2e+02 Score=28.65 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=46.4
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCC----------CHHHHhhhC-CCceEEEecccc----CCCCCCHH
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLV----------SNDVLDLVA-PNARLLYVGKTA----GYHSRTQE 191 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~----------~~~ll~~l~-~~~e~i~~~~~~----~~~~~~~e 191 (381)
.+|++-+ ..-..+.+++++|++||+|++..-. .+.+.+.+. .+++++++...+ ....++..
T Consensus 151 ~~v~l~~----~~~~a~~~al~AI~~ADlIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N~~tq~gEt~g~~~~ 226 (310)
T TIGR01826 151 DRVRLEP----EDVPALREAVEAIREADLIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNLMTQPGETDGFSLE 226 (310)
T ss_pred eEEEEeC----CCCCCCHHHHHHHHhCCEEEECCCcCHHHhchhcCchhHHHHHHhCCCCEEEEeCCCCCCCCCCCCCHH
Confidence 4555544 2235679999999999999874321 112333332 245666653221 23335566
Q ss_pred HHHHHHHHHHHcC-CeEEEEecCCC
Q 016852 192 EIHELLLSFAEVG-ATVVRLKGGDP 215 (381)
Q Consensus 192 ei~~~i~~~~~~G-k~VvvL~sGDP 215 (381)
+-++.|.+++..+ -++|++-.+.+
T Consensus 227 dhv~~i~~~~g~~~~D~vlvn~~~~ 251 (310)
T TIGR01826 227 DHVDALHRHLGKPFIDTVLVNTEKV 251 (310)
T ss_pred HHHHHHHHHcCCCCCCEEEECCCCC
Confidence 6667777766322 25555544443
No 72
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=40.57 E-value=2.9e+02 Score=28.75 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=19.7
Q ss_pred CCeEEEEecCCCCCcCCH--HHHHHHHHhC
Q 016852 204 GATVVRLKGGDPLVFGRG--GEEMDFLQQK 231 (381)
Q Consensus 204 Gk~VvvL~sGDP~~ys~~--~~l~~~l~~~ 231 (381)
+-+-|+|+.|||++.+.. .++++.+++.
T Consensus 155 ~I~~VlLSGGDPLll~d~~L~~iL~~L~~I 184 (417)
T TIGR03820 155 QIRDVLLSGGDPLLLSDDYLDWILTELRAI 184 (417)
T ss_pred CCCEEEEeCCccccCChHHHHHHHHHHhhc
Confidence 456689999999998762 3445666553
No 73
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=40.28 E-value=58 Score=29.27 Aligned_cols=47 Identities=15% Similarity=0.017 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEc
Q 016852 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIP 239 (381)
Q Consensus 189 ~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIP 239 (381)
+..=.++.|.-.....-++.+|++|| +-...|+.++++.|.+|.++-
T Consensus 90 Dv~laIDame~~~~~~iD~~vLvSgD----~DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 90 DVRMAVEAMELIYNPNIDAVALVTRD----ADFLPVINKAKENGKETIVIG 136 (160)
T ss_pred cHHHHHHHHHHhccCCCCEEEEEecc----HhHHHHHHHHHHCCCEEEEEe
Confidence 34444555543333445789999999 667789999999999998875
No 74
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=40.26 E-value=2.9e+02 Score=28.87 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=66.6
Q ss_pred EEEEecCCCCCcCCHHHHHH---HHHhCCCcEEEEcCchHHH---HHHHhcCCCCccCcccceeEEecCCCCCCCCChHH
Q 016852 207 VVRLKGGDPLVFGRGGEEMD---FLQQKGIQVKVIPGITAAS---GIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLF 280 (381)
Q Consensus 207 VvvL~sGDP~~ys~~~~l~~---~l~~~gi~veVIPGISS~~---aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~ 280 (381)
-++|.+|||++ |-...|++ .+.+.+ ++-.|-|==|.+ .=|-++|++-.+ +.+..- .+...
T Consensus 94 s~iLIgGdPGI-GKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~------l~l~aE------t~~e~ 159 (456)
T COG1066 94 SVILIGGDPGI-GKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNN------LYLLAE------TNLED 159 (456)
T ss_pred cEEEEccCCCC-CHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccc------eEEehh------cCHHH
Confidence 37888999998 44455554 444455 888888866654 445677877653 433332 12233
Q ss_pred HHHHhcCCCCcEEEEcCCC---------------CHHHHHHHHHHCCCCCCceeeeEecCCCCCc
Q 016852 281 VAENAADPDSTLVVYMGLS---------------TLPSLALKLMHHGLPPHTPAAAIERGTTPQQ 330 (381)
Q Consensus 281 l~~~l~~~~~tlVIl~~~~---------------~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dE 330 (381)
+...+......++|.+.-. +.++.+..|+..--..+..++++-+.+-+++
T Consensus 160 I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~ 224 (456)
T COG1066 160 IIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGA 224 (456)
T ss_pred HHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEccccc
Confidence 4444544455555543321 3667777777754445677888888887774
No 75
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=40.00 E-value=1.9e+02 Score=28.80 Aligned_cols=69 Identities=25% Similarity=0.223 Sum_probs=42.2
Q ss_pred ccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEe--cCCCCC
Q 016852 140 DLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLK--GGDPLV 217 (381)
Q Consensus 140 elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~--sGDP~~ 217 (381)
-.-+++++++|++||+|+...... +...++. + ...++.+.|.+ ....|+.++ .|+--+
T Consensus 171 a~~~p~vl~AI~~AD~IVlGPgsp--~TSI~P~----L-----------lVpgI~eAL~~---s~A~vV~Vspiig~~~v 230 (303)
T cd07186 171 ARPAPEVLEAIEDADLVIIGPSNP--VTSIGPI----L-----------ALPGIREALRD---KKAPVVAVSPIIGGKAV 230 (303)
T ss_pred CCCCHHHHHHHHhCCEEEECCCcc--HHHhhhh----c-----------cchhHHHHHHh---CCCCEEEEcCCCCCCCC
Confidence 457899999999999887643211 1222221 0 11244444421 223566665 788889
Q ss_pred cCCHHHHHHHH
Q 016852 218 FGRGGEEMDFL 228 (381)
Q Consensus 218 ys~~~~l~~~l 228 (381)
-|++..+++.+
T Consensus 231 ~Gpa~~~m~a~ 241 (303)
T cd07186 231 SGPAAKLMAAL 241 (303)
T ss_pred CchHHHHHHHc
Confidence 99999888776
No 76
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=39.41 E-value=52 Score=30.46 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=36.1
Q ss_pred eEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHH
Q 016852 206 TVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAA 249 (381)
Q Consensus 206 ~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA 249 (381)
.+|++.+||-++-+....+.+.|.+.|+.|. |+.|+-|+..
T Consensus 3 t~~v~~SGDgGw~~~d~~~a~~l~~~G~~Vv---Gvdsl~Yfw~ 43 (192)
T PF06057_consen 3 TLAVFFSGDGGWRDLDKQIAEALAKQGVPVV---GVDSLRYFWS 43 (192)
T ss_pred EEEEEEeCCCCchhhhHHHHHHHHHCCCeEE---EechHHHHhh
Confidence 6789999999999988899999999988764 8899988875
No 77
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=39.26 E-value=58 Score=30.95 Aligned_cols=72 Identities=24% Similarity=0.330 Sum_probs=42.0
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhh-hCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcC
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDL-VAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVG 204 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~-l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~G 204 (381)
...|++||.||+-.+.+.. -.+++|++.......+++. +.++ ++ ++ +.+.-.+.+.+...+|
T Consensus 52 g~~v~vvG~gP~l~e~~~~------~~~~~vi~AdgA~~~l~~~gi~pD--ii-VT--------DlDgd~e~~~~~~~~g 114 (232)
T COG1634 52 GREVAVVGAGPSLEEEIKG------LSSEVVIAADGAVSALLERGIRPD--II-VT--------DLDGDPEDLLSCTAKG 114 (232)
T ss_pred CCEEEEECCCCcHhhhhcc------cccceEEeccHHHHHHHHcCCCCc--EE-Ee--------cCCCCHHHHHHhhccC
Confidence 4789999999986665544 4578888866543333221 1222 22 11 1111134555666688
Q ss_pred CeEEEEecCC
Q 016852 205 ATVVRLKGGD 214 (381)
Q Consensus 205 k~VvvL~sGD 214 (381)
.-+|+-.-||
T Consensus 115 ~i~VVHAHGD 124 (232)
T COG1634 115 SIVVVHAHGD 124 (232)
T ss_pred CEEEEEecCc
Confidence 7777777998
No 78
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=38.44 E-value=37 Score=27.75 Aligned_cols=55 Identities=27% Similarity=0.562 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHcCC--eEEEEecCCCCCcCCHH---HHHHHHHhCC--CcEEEEcCchH
Q 016852 189 TQEEIHELLLSFAEVGA--TVVRLKGGDPLVFGRGG---EEMDFLQQKG--IQVKVIPGITA 243 (381)
Q Consensus 189 ~~eei~~~i~~~~~~Gk--~VvvL~sGDP~~ys~~~---~l~~~l~~~g--i~veVIPGISS 243 (381)
..+++.+.|......+. .-+.+.+|+|+++-... ++++.+++.+ +.+.+.-..+-
T Consensus 30 ~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~~~~~l~~~i~~~~~~~~~~~i~i~TNg~~ 91 (119)
T PF13394_consen 30 SIEELEEIIDELKEKGFRPSTVVFTGGEPLLYLNPEDLIELIEYLKERGPEIKIRIETNGTL 91 (119)
T ss_dssp -HHHHHHHHHHHHHTT----EEEEESSSGGGSTTHHHHHHHHCTSTT-----EEEEEE-STT
T ss_pred cHhHHHHHHHHHHhcCCceEEEEEECCCCccccCHHHHHHHHHHHHhhCCCceEEEEeCCee
Confidence 44555555544444443 34777899999874333 4455555555 55555554333
No 79
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=38.41 E-value=99 Score=26.43 Aligned_cols=52 Identities=31% Similarity=0.507 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhC--CCcEEEEcCchH
Q 016852 192 EIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQK--GIQVKVIPGITA 243 (381)
Q Consensus 192 ei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~--gi~veVIPGISS 243 (381)
++.+.+......+...+.+..|||+.......+++.+++. ++.+.+.-....
T Consensus 32 ~~~~~~~~~~~~~~~~i~~~ggep~~~~~~~~~i~~~~~~~~~~~~~i~T~~~~ 85 (204)
T cd01335 32 EILDIVLEAKERGVEVVILTGGEPLLYPELAELLRRLKKELPGFEISIETNGTL 85 (204)
T ss_pred HHHHHHHHHHhcCceEEEEeCCcCCccHhHHHHHHHHHhhCCCceEEEEcCccc
Confidence 4445555555667788888999999998666778888776 677766655443
No 80
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=38.02 E-value=3.8e+02 Score=25.89 Aligned_cols=122 Identities=12% Similarity=0.115 Sum_probs=58.4
Q ss_pred EEEEEecCC-CCcccchHHHHHHHH--hcCEEEEcCCC--CHHHHhhhCCCceEEEecc---------ccCC-CCCCHHH
Q 016852 128 NVYLVGTGP-GDPDLLTLKAMKVIQ--KADLLLYDRLV--SNDVLDLVAPNARLLYVGK---------TAGY-HSRTQEE 192 (381)
Q Consensus 128 ~l~lVGiGP-Gd~elLTlkA~~aL~--~ADvVi~~~~~--~~~ll~~l~~~~e~i~~~~---------~~~~-~~~~~ee 192 (381)
+|-+|-..- ++|+.-...+.++|. ++++|++.... ...+.+.+.. ..+.++.. ...+ .......
T Consensus 40 ~v~lv~~D~~~~p~~a~~~~~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~-~~vp~i~~~~~~~~~~~~~~F~~~~~~~~ 118 (334)
T cd06356 40 EVELVDYDTQSDNERYQQYAQRLALQDKVDVVWGGISSASREAIRPIMDR-TKQLYFYTTQYEGGVCDRNTFCTGATPAQ 118 (334)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCCEEEeCcchHHHHHHHHHHHh-cCceEEeCCCccCCcccCCEEEeCCCcHH
Confidence 555554443 577777777788885 58888885332 2223344432 12222110 0000 0011122
Q ss_pred HHHHHHHHHH--cCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcE----EEEcCchHHHHHHHh
Q 016852 193 IHELLLSFAE--VGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQV----KVIPGITAASGIAAE 250 (381)
Q Consensus 193 i~~~i~~~~~--~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~v----eVIPGISS~~aaaA~ 250 (381)
....+.+++. .+++|+++...|+.=.+......+.+++.|+++ .+-+|-..+.....+
T Consensus 119 ~~~~~~~~~~~~~~~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~ 182 (334)
T cd06356 119 QFSTLVPYMMEKYGKKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEEFIPLDVSDFGSTIQK 182 (334)
T ss_pred HHHHHHHHHHHccCCeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeeeecCCCchhHHHHHHH
Confidence 2222333322 357899998777633333334555666666654 223344444444443
No 81
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=37.21 E-value=3.6e+02 Score=25.54 Aligned_cols=50 Identities=10% Similarity=0.002 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCCC---------cCCHHHHHHHHHhCCCcEEEEcC
Q 016852 190 QEEIHELLLSFAEVGATVVRLKGGDPLV---------FGRGGEEMDFLQQKGIQVKVIPG 240 (381)
Q Consensus 190 ~eei~~~i~~~~~~Gk~VvvL~sGDP~~---------ys~~~~l~~~l~~~gi~veVIPG 240 (381)
..++...|.......+..+.+..|++-. ......+...|++. +.|+.+.-
T Consensus 131 E~~lt~aI~~v~~~~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l 189 (271)
T PF09822_consen 131 EYELTSAIRRVTSDEKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNL 189 (271)
T ss_pred HHHHHHHHHHHhcccCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCC
Confidence 4466666766666656666677777766 22344566677776 77776664
No 82
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=37.00 E-value=44 Score=28.02 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEc
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIP 239 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIP 239 (381)
-+.++|++|| +-...+++.+++.|.+|.++-
T Consensus 96 ~d~ivLvSgD----~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 96 PDTIVLVSGD----SDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp -SEEEEE-------GGGHHHHHHHHHH--EEEEEE
T ss_pred CCEEEEEECc----HHHHHHHHHHHHcCCEEEEEE
Confidence 3889999999 556678888998899998886
No 83
>PRK13057 putative lipid kinase; Reviewed
Probab=36.61 E-value=88 Score=30.12 Aligned_cols=51 Identities=31% Similarity=0.492 Sum_probs=39.9
Q ss_pred HHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCc
Q 016852 201 AEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLT 256 (381)
Q Consensus 201 ~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~ 256 (381)
...+.+++++..|| |+..+.+..+...+.++=++|+- +.+-++-.+|+|-+
T Consensus 47 ~~~~~d~iiv~GGD----GTv~~v~~~l~~~~~~lgiiP~G-T~Ndfar~Lg~~~~ 97 (287)
T PRK13057 47 YADGVDLVIVGGGD----GTLNAAAPALVETGLPLGILPLG-TANDLARTLGIPLD 97 (287)
T ss_pred HHcCCCEEEEECch----HHHHHHHHHHhcCCCcEEEECCC-CccHHHHHcCCCCC
Confidence 34566789999999 88888888887778899999974 45666677888743
No 84
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=36.59 E-value=2.8e+02 Score=27.59 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=21.3
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEEcC
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDR 160 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~ 160 (381)
+|++.+.. --.+++++++|++||+|++..
T Consensus 155 ~v~l~~~~----~~~~~~a~~AI~~AD~Iv~gP 183 (308)
T cd07187 155 RVFLEPPD----PKANPEALEAIEEADLIVYGP 183 (308)
T ss_pred EEEEECCC----CCCCHHHHHHHHhCCEEEECC
Confidence 45554433 357889999999999998743
No 85
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=36.37 E-value=3.5e+02 Score=27.13 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=89.9
Q ss_pred CCCCccchhhhHhhhhhhhhccccCCCCCCCCCCcccccc---ccccccc-------ccCHHHHHHHHHHHHHhhhhccc
Q 016852 50 SSPFTEKHSFERYQRDQWVYSSLQHNRPEPTSPSVSLDAD---STRRNDI-------ALQLPELKKLLQVLREKREEDRV 119 (381)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~el~~~l~~~~~~~~~~~~ 119 (381)
..|++ -..|.+|..|+-.-+.++.-+..+=-.|++-. .++ .++ -.++..+.+.++. -..++-
T Consensus 4 ~~p~~---R~RRlR~~~~~R~lv~Et~l~~~dLI~PlFV~eg~~~~-~~I~smPg~~r~sid~l~~~~~~---~~~~Gi- 75 (322)
T PRK13384 4 TFPLR---RLRRLRRSEAMRDLVRETEVSLSDLIYPIFIEEHITDA-VPISTLPGISRLPESALADEIER---LYALGI- 75 (322)
T ss_pred CCCCc---CCCcCCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCc-eecCCCCCcceECHHHHHHHHHH---HHHcCC-
Confidence 44554 34677778887766665555455544555321 111 111 2334444444444 333332
Q ss_pred CCCCCCCCEEEEEec---------CCCCcccchHHHHHHHHhc--CEEEEcCCCCHHHHhhhC--CCceEEEeccccCCC
Q 016852 120 GAEKCGPGNVYLVGT---------GPGDPDLLTLKAMKVIQKA--DLLLYDRLVSNDVLDLVA--PNARLLYVGKTAGYH 186 (381)
Q Consensus 120 ~~~~~~~g~l~lVGi---------GPGd~elLTlkA~~aL~~A--DvVi~~~~~~~~ll~~l~--~~~e~i~~~~~~~~~ 186 (381)
..|.+.|+ .--|++.+..+|.+.|+++ |+++..+-. +.-+- .++=++.-+ ....
T Consensus 76 -------~~v~lFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVc----Lc~YT~hGHcGil~~g--~i~N 142 (322)
T PRK13384 76 -------RYVMPFGISHHKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDIC----FCEYTDHGHCGVLHND--EVDN 142 (322)
T ss_pred -------CEEEEeCCCCCCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeee----cccCCCCCceeeccCC--cCcc
Confidence 45555555 3336788999999999998 766653211 11111 122222111 1122
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCC
Q 016852 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGI 233 (381)
Q Consensus 187 ~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi 233 (381)
..+.+.+.+....+++.|-+|+ .+-| ++-|+.+.+.+.|.+.|+
T Consensus 143 D~Tl~~L~~~Als~A~AGADiV--APSd-MMDGrV~aIR~aLd~~g~ 186 (322)
T PRK13384 143 DATVENLVKQSVTAAKAGADML--APSA-MMDGQVKAIRQGLDAAGF 186 (322)
T ss_pred HHHHHHHHHHHHHHHHcCCCeE--eccc-ccccHHHHHHHHHHHCCC
Confidence 3355666777778888997764 4444 677999999999999988
No 86
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=36.35 E-value=2e+02 Score=26.54 Aligned_cols=90 Identities=19% Similarity=0.243 Sum_probs=51.2
Q ss_pred CEEEEEecCCCCcccchHHHHHHHH-hcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCC
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQ-KADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGA 205 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~-~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk 205 (381)
.++.|||.|.-. .-++..+++ .|++.+.+....+.+.++.... ++..+. ..+..+ .+ ++.
T Consensus 10 k~vlVvGgG~va----~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~-~i~~~~-----~~~~~~----dl-----~~~ 70 (205)
T TIGR01470 10 RAVLVVGGGDVA----LRKARLLLKAGAQLRVIAEELESELTLLAEQG-GITWLA-----RCFDAD----IL-----EGA 70 (205)
T ss_pred CeEEEECcCHHH----HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC-CEEEEe-----CCCCHH----Hh-----CCc
Confidence 589999998621 233444443 3467777776666665655432 222111 111111 11 577
Q ss_pred eEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEE
Q 016852 206 TVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI 238 (381)
Q Consensus 206 ~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVI 238 (381)
.+|++.+||+-+. ..+...+++.|+.|.++
T Consensus 71 ~lVi~at~d~~ln---~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 71 FLVIAATDDEELN---RRVAHAARARGVPVNVV 100 (205)
T ss_pred EEEEECCCCHHHH---HHHHHHHHHcCCEEEEC
Confidence 8999999998543 35566666667766544
No 87
>PRK13055 putative lipid kinase; Reviewed
Probab=35.99 E-value=1.1e+02 Score=30.26 Aligned_cols=51 Identities=27% Similarity=0.384 Sum_probs=39.3
Q ss_pred HHHcCCeEEEEecCCCCCcCCHHHHHHHHHhC--CCcEEEEcCchHHHHHHHhcCCCC
Q 016852 200 FAEVGATVVRLKGGDPLVFGRGGEEMDFLQQK--GIQVKVIPGITAASGIAAELGIPL 255 (381)
Q Consensus 200 ~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~--gi~veVIPGISS~~aaaA~lGipl 255 (381)
....+-+++++.+|| |+..+++..+... +..+=++|+ .+.+.++-.+|+|.
T Consensus 55 ~~~~~~d~vvv~GGD----GTl~evvngl~~~~~~~~LgiiP~-GTgNdfAr~Lgi~~ 107 (334)
T PRK13055 55 AAEAGFDLIIAAGGD----GTINEVVNGIAPLEKRPKMAIIPA-GTTNDYARALKIPR 107 (334)
T ss_pred HhhcCCCEEEEECCC----CHHHHHHHHHhhcCCCCcEEEECC-CchhHHHHHcCCCC
Confidence 334555788999999 7788888877643 467999998 66677888899986
No 88
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=35.95 E-value=1.8e+02 Score=28.74 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCC-C-cEEEEcCchHH
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKG-I-QVKVIPGITAA 244 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~g-i-~veVIPGISS~ 244 (381)
.+.+++...+......|-..+.+..|.|++.....++++.+++.+ + .+.+.-.-+.+
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll 103 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRL 103 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCCCCceEEEEeChhHH
Confidence 466777776666666676778889999999988888888888764 3 56555444333
No 89
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=35.84 E-value=1.5e+02 Score=30.05 Aligned_cols=59 Identities=29% Similarity=0.309 Sum_probs=35.8
Q ss_pred HhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcC-CeEEEEecCCCCCcCCH--HHHHHHHHhCCCcEE
Q 016852 167 LDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVG-ATVVRLKGGDPLVFGRG--GEEMDFLQQKGIQVK 236 (381)
Q Consensus 167 l~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~G-k~VvvL~sGDP~~ys~~--~~l~~~l~~~gi~ve 236 (381)
|..+.-...+++++.. ..-+..+.|+ +.| ++|+++. ||--.|.+ ..+.+.|+++|++|.
T Consensus 38 l~~lgi~g~~i~~s~~------p~~~cad~ii---~~gi~rVVi~~--D~d~~G~~~~~~~~~~L~~aGi~V~ 99 (360)
T PRK14719 38 LKNLKINANFITVSNT------PVFQIADDLI---AENISEVILLT--DFDRAGRVYAKNIMEEFQSRGIKVN 99 (360)
T ss_pred HHHcCCCCcEEEEeCC------chHHHHHHHH---HcCCCEEEEEE--CCCCCCCccchHHHHHHHHCCCEEE
Confidence 3334444455555421 1223555553 345 7898888 88766543 467889999999884
No 90
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=35.84 E-value=4.8e+02 Score=26.44 Aligned_cols=144 Identities=16% Similarity=0.103 Sum_probs=74.8
Q ss_pred cccccCHHH-HHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEE-cCCCCHHHHhhhC
Q 016852 94 NDIALQLPE-LKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVA 171 (381)
Q Consensus 94 ~~~~~~~~e-l~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~-~~~~~~~ll~~l~ 171 (381)
.++++++|| |++.-...-...+.. . .-.+++-|=--=+.-.+.....+.. ||+|+. +.... ..+.
T Consensus 25 k~V~LQ~PeGLk~~~~~ia~~le~~--~-----~~~v~i~gd~~yGACdi~~~~a~~~--~D~iVH~GHs~l----~~~~ 91 (347)
T COG1736 25 KRVLLQFPEGLKRYAIEIADILEAN--L-----GAEVIISGDPVYGACDIDDLKAKDV--VDLIVHYGHSCL----PPVE 91 (347)
T ss_pred ceEEEECChHHHHHHHHHHHHHHHh--h-----CceEEEeCCcccccccCCHHHHhhc--ccEEEEcccccC----CCcC
Confidence 567888888 655444432211111 0 1234443321112223433333344 999985 43321 1123
Q ss_pred CCceEEEeccccCCCCCCHHHHHHHHHHHHH-cCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHh
Q 016852 172 PNARLLYVGKTAGYHSRTQEEIHELLLSFAE-VGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAE 250 (381)
Q Consensus 172 ~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~-~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~ 250 (381)
...+++++. .....+.+.+......... .+++|+++. .+-++.....+.+.|+..|+.+.+.+|-+...+..=.
T Consensus 92 ~~~~Viyv~---~~~~~d~~~~~~~~~~~l~~~~r~I~li~--t~q~~~~l~~~k~~L~~~g~~v~i~~~~~r~~~~gqV 166 (347)
T COG1736 92 YELPVIYVF---AFSRVDVDLVVLEATRELKKGSRRIGLIT--TAQHVHLLEEVKEILEGRGYEVVIGRGQTRPAYPGQV 166 (347)
T ss_pred CCCcEEEee---cccccchhHHHHHhhHhhccCCceEEEEe--cccchhHHHHHHHHhhcCCeEEEEeCCCCcccCccee
Confidence 345556553 2233344444433333333 344577764 3446666777888999999999999998875544444
Q ss_pred cCCCC
Q 016852 251 LGIPL 255 (381)
Q Consensus 251 lGipl 255 (381)
+|-..
T Consensus 167 LGC~~ 171 (347)
T COG1736 167 LGCNF 171 (347)
T ss_pred ecccc
Confidence 45443
No 91
>PRK05443 polyphosphate kinase; Provisional
Probab=35.74 E-value=1.8e+02 Score=32.29 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=55.5
Q ss_pred HHHHHHhcCEEEEcCCCCH-HHHhhhC---CCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcC-C
Q 016852 146 AMKVIQKADLLLYDRLVSN-DVLDLVA---PNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFG-R 220 (381)
Q Consensus 146 A~~aL~~ADvVi~~~~~~~-~ll~~l~---~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys-~ 220 (381)
-.++|++=|++++..+.+- .+++++. .+..++.+.-. .+.-.....+++.|.++++.|++|.+++.+-+-|-. .
T Consensus 332 if~~I~~~DiLLh~PY~SF~~~~~~i~~Aa~DP~V~~Ik~t-lYr~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~ 410 (691)
T PRK05443 332 IFAAIREKDILLHHPYESFDPVVEFLRQAAADPDVLAIKQT-LYRTSKDSPIVDALIEAAENGKQVTVLVELKARFDEEA 410 (691)
T ss_pred HHHHHhhCCEEEECCccCchHHHHHHHHhccCCCeeEEEEE-EEEecCCHHHHHHHHHHHHcCCEEEEEEccCccccHHH
Confidence 5688999999998666543 3445553 22222221100 111122357889999999999999999988874332 2
Q ss_pred HHHHHHHHHhCCCcE
Q 016852 221 GGEEMDFLQQKGIQV 235 (381)
Q Consensus 221 ~~~l~~~l~~~gi~v 235 (381)
.....+.|.+.|+.|
T Consensus 411 n~~~~~~L~~aGv~V 425 (691)
T PRK05443 411 NIRWARRLEEAGVHV 425 (691)
T ss_pred HHHHHHHHHHcCCEE
Confidence 224566888887776
No 92
>PRK13054 lipid kinase; Reviewed
Probab=35.54 E-value=1.1e+02 Score=29.67 Aligned_cols=52 Identities=33% Similarity=0.385 Sum_probs=37.3
Q ss_pred HHHcCCeEEEEecCCCCCcCCHHHHHHHHHhC----CCcEEEEcCchHHHHHHHhcCCCCc
Q 016852 200 FAEVGATVVRLKGGDPLVFGRGGEEMDFLQQK----GIQVKVIPGITAASGIAAELGIPLT 256 (381)
Q Consensus 200 ~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~----gi~veVIPGISS~~aaaA~lGipl~ 256 (381)
....+-+++++..|| |+..+.+..+.+. ...+=++|+-| .+-++-.+|+|.+
T Consensus 52 ~~~~~~d~vvv~GGD----GTl~evv~~l~~~~~~~~~~lgiiP~GT-gNdfar~lgi~~~ 107 (300)
T PRK13054 52 ALALGVATVIAGGGD----GTINEVATALAQLEGDARPALGILPLGT-ANDFATAAGIPLE 107 (300)
T ss_pred HHHcCCCEEEEECCc----cHHHHHHHHHHhhccCCCCcEEEEeCCc-HhHHHHhcCCCCC
Confidence 334666889999999 7777777766532 35899999855 4666677898853
No 93
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=35.22 E-value=16 Score=34.55 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=30.3
Q ss_pred CCCCCcccccccccccccccCHHHHHHHHHHHHHhhhh
Q 016852 79 PTSPSVSLDADSTRRNDIALQLPELKKLLQVLREKREE 116 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~~~~~~~~ 116 (381)
||.|++|..+..|| +++...+++...+++.+...|..
T Consensus 140 ST~G~sP~lar~lR-~~ie~~l~~~~~l~~~l~~~R~~ 176 (223)
T PRK05562 140 NTKGGSPKTSVFIG-EKVKNFLKKYDDFIEYVTKIRNK 176 (223)
T ss_pred ECCCcCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999 77777778888888777666654
No 94
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=35.01 E-value=1e+02 Score=27.87 Aligned_cols=46 Identities=17% Similarity=0.087 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCch
Q 016852 193 IHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGIT 242 (381)
Q Consensus 193 i~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGIS 242 (381)
.++.+.-..+...+.++|++|| +-...+++.++++|.++.+++...
T Consensus 99 a~D~~~l~~~~~~D~ivl~SgD----~DF~p~v~~~~~~G~rv~v~~~~~ 144 (181)
T COG1432 99 AVDAMELADKKNVDTIVLFSGD----GDFIPLVEAARDKGKRVEVAGIEP 144 (181)
T ss_pred HHHHHHhhcccCCCEEEEEcCC----ccHHHHHHHHHHcCCEEEEEecCC
Confidence 3444443444567889999999 445566889999999999998877
No 95
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=34.92 E-value=5.2e+02 Score=26.57 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHh
Q 016852 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQ 230 (381)
Q Consensus 189 ~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~ 230 (381)
+.++..+.+.+.++.|..|+++-.|| +...+..+.+.|.+
T Consensus 419 ~~~~a~~~a~~~a~~gD~vlv~G~g~--~~~~~~~~~~~l~~ 458 (461)
T PRK00421 419 DLEDLAELLAEVLKPGDLVLTMGAGD--ITKLARALLELLLK 458 (461)
T ss_pred CHHHHHHHHHHhcCCCCEEEEECCCC--HHHHHHHHHHHHhh
Confidence 35666677766666664455555777 55555566666653
No 96
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=34.25 E-value=4.6e+02 Score=25.78 Aligned_cols=38 Identities=0% Similarity=-0.098 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCC
Q 016852 289 DSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGT 326 (381)
Q Consensus 289 ~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg 326 (381)
.+.+++.........+.+.+.+.|+..+.-+|++....
T Consensus 214 ~~vIvl~~~~~~~~~l~~qa~~~g~~~~~~~wi~t~~~ 251 (377)
T cd06379 214 SRVILLSASEDDAAVIYRNAGMLNMTGEGYVWIVSEQA 251 (377)
T ss_pred CeEEEEEcCHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Confidence 34555555556777888888888886554577766543
No 97
>PRK05414 urocanate hydratase; Provisional
Probab=33.85 E-value=2.1e+02 Score=30.52 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccc
Q 016852 103 LKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKT 182 (381)
Q Consensus 103 l~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~ 182 (381)
-++++...|.+++ + .-.|++++-+ |.|+...--++|...-.-+-+++ +-... .+...++ ..++.
T Consensus 150 yeT~~~a~rk~f~-g------~L~G~~~lTa-GLGGMgGAQPlA~~mag~v~i~v-Evd~~-ri~kR~~--~gyld---- 213 (556)
T PRK05414 150 YETFAEAARQHFG-G------DLAGRLVLTA-GLGGMGGAQPLAATMAGAVCLAV-EVDES-RIDKRLR--TGYLD---- 213 (556)
T ss_pred HHHHHHHHHHhcC-C------CCceeEEEEe-cCCccccccHHHHHhcCceEEEE-EECHH-HHHHHHh--CCcce----
Confidence 3677777666653 2 1257877664 77777666677776554443333 21110 1222221 11111
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchH
Q 016852 183 AGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA 243 (381)
Q Consensus 183 ~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS 243 (381)
....+.++.++.+.++.++++.+.+-.-|. ..+++.++-++|+.++++-=-+|
T Consensus 214 --~~~~~Ldeal~~~~~a~~~~~~~SIg~~GN------aadv~~~l~~~~i~pDlvtDQTS 266 (556)
T PRK05414 214 --EKADDLDEALALAEEAKAAGEPLSIGLLGN------AADVLPELVRRGIRPDLVTDQTS 266 (556)
T ss_pred --eEcCCHHHHHHHHHHHHHcCCceEEEEecc------HHHHHHHHHHcCCCCCccCcCcc
Confidence 112367899999999998998888876665 78889988888887777655554
No 98
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=33.18 E-value=3.2e+02 Score=28.81 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEE-Ec-CCCCHHHHhhhCCCceEEEec
Q 016852 103 LKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLL-YD-RLVSNDVLDLVAPNARLLYVG 180 (381)
Q Consensus 103 l~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi-~~-~~~~~~ll~~l~~~~e~i~~~ 180 (381)
.+++++..|.++.- .-+|++++-+ |.|....--+.|...-..+-+++ ++ .++..+ ++ .. |+.
T Consensus 150 yeT~~~~~r~h~~g-------dL~Gk~~lTa-GLGGMgGAQplA~~ma~~v~i~vevd~srI~~R----l~--t~--y~d 213 (561)
T COG2987 150 YETFAEAGRQHFGG-------DLKGKWVLTA-GLGGMGGAQPLAATMAGAVCIAVEVDESRIDKR----LR--TG--YLD 213 (561)
T ss_pred HHHHHHHHHHhcCC-------CccceEEEec-CCCcccccchHHHHhcCceEEEEEeCHHHHHHH----Hh--cc--hhh
Confidence 36667776555521 1258887764 44444444455555444444443 22 222111 11 11 111
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchH
Q 016852 181 KTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA 243 (381)
Q Consensus 181 ~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS 243 (381)
....+.+|.+..+.+..++|+.+.+-.-|. ..+++..+-++|+.+.++---+|
T Consensus 214 ----~~a~~ldeAl~~a~~~~~ag~p~SIgl~GN------aaei~~~l~~r~~~pD~vtDQTs 266 (561)
T COG2987 214 ----EIAETLDEALALAEEATAAGEPISIGLLGN------AAEILPELLRRGIRPDLVTDQTS 266 (561)
T ss_pred ----hhcCCHHHHHHHHHHHHhcCCceEEEEecc------HHHHHHHHHHcCCCCceeccccc
Confidence 112357788888888888888888866665 78888888888887777654443
No 99
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=33.13 E-value=3e+02 Score=23.26 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCcC
Q 016852 191 EEIHELLLSFAEVGATVVRLKGGDPLVFG 219 (381)
Q Consensus 191 eei~~~i~~~~~~Gk~VvvL~sGDP~~ys 219 (381)
+.+.+.+..+..++|+++++-+||-...+
T Consensus 68 ~~~~~fl~~l~~~~k~~avfgtgd~~~~~ 96 (140)
T TIGR01754 68 DEMKDFIAELGYKPSNVAIFGTGETQWGD 96 (140)
T ss_pred HHHHHHHHHhcccCCEEEEEEcCCCCcCc
Confidence 34555555544578999999999987764
No 100
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=32.97 E-value=1.9e+02 Score=27.76 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCc
Q 016852 190 QEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGI 241 (381)
Q Consensus 190 ~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGI 241 (381)
.....+++...++.|++|++.++|.-.-......+.+..++.|..+.+-+|.
T Consensus 71 ~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga 122 (265)
T PRK13303 71 HAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGA 122 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChH
Confidence 3455678888889999999988872111122445667777778888776654
No 101
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=32.95 E-value=3e+02 Score=25.93 Aligned_cols=85 Identities=11% Similarity=0.135 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHH
Q 016852 144 LKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGE 223 (381)
Q Consensus 144 lkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~ 223 (381)
.++.+..++.++-++.. +-+++.++...+.+- .......++....++.|++|.+++.|...-......
T Consensus 13 e~a~~~a~~~g~~~~~d-----~~eLl~~~vDaVvia-------tp~~~H~e~a~~aL~aGkhVl~~s~gAlad~e~~~~ 80 (229)
T TIGR03855 13 KDAKELAERCGAKIVSD-----FDEFLPEDVDIVVEA-------ASQEAVKEYAEKILKNGKDLLIMSVGALADRELRER 80 (229)
T ss_pred HHHHHHHHHhCCceECC-----HHHHhcCCCCEEEEC-------CChHHHHHHHHHHHHCCCCEEEECCcccCCHHHHHH
Confidence 45556656555433332 223333344444432 233455677888889999999988886543344667
Q ss_pred HHHHHHhCCCcEEEEcC
Q 016852 224 EMDFLQQKGIQVKVIPG 240 (381)
Q Consensus 224 l~~~l~~~gi~veVIPG 240 (381)
+.+..++.|..+.+-+|
T Consensus 81 l~~aA~~~g~~l~i~sG 97 (229)
T TIGR03855 81 LREVARSSGRKVYIPSG 97 (229)
T ss_pred HHHHHHhcCCEEEEChH
Confidence 78888888878766554
No 102
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=32.73 E-value=97 Score=28.61 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHcC---CeEEEEecCCCCCcCCH-HHHHHHHHhCCCcEEEEc
Q 016852 189 TQEEIHELLLSFAEVG---ATVVRLKGGDPLVFGRG-GEEMDFLQQKGIQVKVIP 239 (381)
Q Consensus 189 ~~eei~~~i~~~~~~G---k~VvvL~sGDP~~ys~~-~~l~~~l~~~gi~veVIP 239 (381)
+.+++.+.+....... ...+.+..|+|++.-.. ..+++.+++.|+.+.+.-
T Consensus 47 s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~T 101 (235)
T TIGR02493 47 TPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDT 101 (235)
T ss_pred CHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEc
Confidence 4566666665544321 13566779999998754 478888888888777654
No 103
>PRK12361 hypothetical protein; Provisional
Probab=32.60 E-value=1.2e+02 Score=32.22 Aligned_cols=51 Identities=31% Similarity=0.395 Sum_probs=39.0
Q ss_pred HHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhc-CCC
Q 016852 199 SFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAEL-GIP 254 (381)
Q Consensus 199 ~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~l-Gip 254 (381)
+...++.+++++..|| |+..+++..+.+.++.+=++|+-|. +.++-.+ |++
T Consensus 292 ~~~~~~~d~Viv~GGD----GTl~ev~~~l~~~~~~lgiiP~GTg-NdfAr~L~gi~ 343 (547)
T PRK12361 292 QARKAGADIVIACGGD----GTVTEVASELVNTDITLGIIPLGTA-NALSHALFGLG 343 (547)
T ss_pred HHHhcCCCEEEEECCC----cHHHHHHHHHhcCCCCEEEecCCch-hHHHHHhcCCC
Confidence 3445667899999999 8888888888877889999998665 4444555 775
No 104
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=32.30 E-value=1.1e+02 Score=25.65 Aligned_cols=47 Identities=30% Similarity=0.313 Sum_probs=36.2
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCC-----CcEEEEcCchHHHHHHHhcCCCCc
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKG-----IQVKVIPGITAASGIAAELGIPLT 256 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~g-----i~veVIPGISS~~aaaA~lGipl~ 256 (381)
.+.++++.|| |+..+++..+.+.+ .++=++|+-+ .+.++-.+|+|-.
T Consensus 50 ~d~vvv~GGD----GTi~~vvn~l~~~~~~~~~~plgiiP~GT-gNdfar~lgi~~~ 101 (124)
T smart00046 50 FDRVLVCGGD----GTVGWVLNALDKRELPLPEPPVAVLPLGT-GNDLARSLGWGGG 101 (124)
T ss_pred CCEEEEEccc----cHHHHHHHHHHhcccccCCCcEEEeCCCC-hhHHHHHcCCCCC
Confidence 3578889999 77778888776554 6899999966 6777778898754
No 105
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=31.47 E-value=6.4e+02 Score=26.53 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=35.0
Q ss_pred HcCCeEEEEecCCCCCcCCHHHHHHHHHhC-------CCcEEEEcCchHHHHHHHhc---CCCCc
Q 016852 202 EVGATVVRLKGGDPLVFGRGGEEMDFLQQK-------GIQVKVIPGITAASGIAAEL---GIPLT 256 (381)
Q Consensus 202 ~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~-------gi~veVIPGISS~~aaaA~l---Gipl~ 256 (381)
..+-+.+++++|| |+..+++.-|... .+++=+||+-|.=..+.+.+ |+|..
T Consensus 166 ~~~~D~VV~vGGD----GTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~ 226 (481)
T PLN02958 166 LSKYDGIVCVSGD----GILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCS 226 (481)
T ss_pred hcCCCEEEEEcCC----CHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcC
Confidence 3456788899999 7777777766533 47899999866644444432 77653
No 106
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=31.30 E-value=19 Score=33.27 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=27.2
Q ss_pred CCCCCcccccccccccccccCHHH-HHHHHHHHHHhhhh
Q 016852 79 PTSPSVSLDADSTRRNDIALQLPE-LKKLLQVLREKREE 116 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~e-l~~~l~~~~~~~~~ 116 (381)
||.|++|..+..|| +++...+|+ ..++++.+...|..
T Consensus 124 sT~G~sP~la~~lr-~~ie~~~~~~~~~~~~~~~~~R~~ 161 (202)
T PRK06718 124 STDGASPKLAKKIR-DELEALYDESYESYIDFLYECRQK 161 (202)
T ss_pred ECCCCChHHHHHHH-HHHHHHcchhHHHHHHHHHHHHHH
Confidence 79999999999999 666655444 77777766555553
No 107
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=31.24 E-value=59 Score=27.13 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=33.0
Q ss_pred HHHHHHHHHH-HcCCeEEEEecCCCCC---cCCHHHHHHHHHhCCC-cEEEEcCchHHHHH
Q 016852 192 EIHELLLSFA-EVGATVVRLKGGDPLV---FGRGGEEMDFLQQKGI-QVKVIPGITAASGI 247 (381)
Q Consensus 192 ei~~~i~~~~-~~Gk~VvvL~sGDP~~---ys~~~~l~~~l~~~gi-~veVIPGISS~~aa 247 (381)
+..+.+.+.+ +.+..-+.+.+|+|++ +....++++.+++.+. .+.+.-....+...
T Consensus 39 ~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~~~~~~~~tng~~~~~~ 99 (139)
T PF13353_consen 39 EIIEEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEKFPKKIIILTNGYTLDEL 99 (139)
T ss_dssp HHHHHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT-SEEEEEETT--HHHH
T ss_pred hhhhhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHhCCCCeEEEECCCchhHH
Confidence 4444444444 4455667778999999 6666778888888766 34444433443333
No 108
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=31.10 E-value=1.5e+02 Score=26.49 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=35.7
Q ss_pred HHHHHH--HhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCC
Q 016852 145 KAMKVI--QKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPL 216 (381)
Q Consensus 145 kA~~aL--~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~ 216 (381)
.|.+++ +.+|+|+....+...+.+.+ +..++.+. .+..++.+.+....+.+++|+++......
T Consensus 25 ~a~~~~~~~g~dViIsRG~ta~~lr~~~--~iPVV~I~-------~s~~Dil~al~~a~~~~~~Iavv~~~~~~ 89 (176)
T PF06506_consen 25 EARQLLESEGADVIISRGGTAELLRKHV--SIPVVEIP-------ISGFDILRALAKAKKYGPKIAVVGYPNII 89 (176)
T ss_dssp HHHHHHTTTT-SEEEEEHHHHHHHHCC---SS-EEEE----------HHHHHHHHHHCCCCTSEEEEEEESS-S
T ss_pred HHHHhhHhcCCeEEEECCHHHHHHHHhC--CCCEEEEC-------CCHhHHHHHHHHHHhcCCcEEEEeccccc
Confidence 444443 67899998655544444444 34555543 23457777777666677789988876544
No 109
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=30.95 E-value=1.5e+02 Score=28.54 Aligned_cols=51 Identities=31% Similarity=0.416 Sum_probs=37.2
Q ss_pred HHcCCeEEEEecCCCCCcCCHHHHHHHHHhC----CCcEEEEcCchHHHHHHHhcCCCCc
Q 016852 201 AEVGATVVRLKGGDPLVFGRGGEEMDFLQQK----GIQVKVIPGITAASGIAAELGIPLT 256 (381)
Q Consensus 201 ~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~----gi~veVIPGISS~~aaaA~lGipl~ 256 (381)
..++.++++++.|| |+..+.+..+... ..++-++|. .+.+-++-.+|+|.+
T Consensus 49 ~~~~~d~vv~~GGD----GTi~ev~ngl~~~~~~~~~~lgiiP~-GTgNdfAr~l~ip~~ 103 (293)
T TIGR03702 49 LALGVSTVIAGGGD----GTLREVATALAQIRDDAAPALGLLPL-GTANDFATAAGIPLE 103 (293)
T ss_pred HHcCCCEEEEEcCC----hHHHHHHHHHHhhCCCCCCcEEEEcC-CchhHHHHhcCCCCC
Confidence 34666889999999 7777777766532 235899997 455667777899864
No 110
>PRK09271 flavodoxin; Provisional
Probab=30.67 E-value=3.6e+02 Score=23.45 Aligned_cols=89 Identities=13% Similarity=0.054 Sum_probs=45.6
Q ss_pred EEEEecCCCCcccchHHHHHHHHhcC--EEEEcCCC---CHHHHhhhCCCceEEEeccccCCCCCC---HHHHHHHHHHH
Q 016852 129 VYLVGTGPGDPDLLTLKAMKVIQKAD--LLLYDRLV---SNDVLDLVAPNARLLYVGKTAGYHSRT---QEEIHELLLSF 200 (381)
Q Consensus 129 l~lVGiGPGd~elLTlkA~~aL~~AD--vVi~~~~~---~~~ll~~l~~~~e~i~~~~~~~~~~~~---~eei~~~i~~~ 200 (381)
+.+-|.--|+.+.|-.+..+.|+... +.+..-.. .+...+.. +...+.++......... ...+.+.+...
T Consensus 4 ~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~ 81 (160)
T PRK09271 4 LLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPE--DYDLYLLGTWTDNAGRTPPEMKRFIAELAET 81 (160)
T ss_pred EEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcc--cCCEEEEECcccCCCcCCHHHHHHHHHHHHH
Confidence 44557777888888887777777653 33332111 00011111 23444444221111111 23334444443
Q ss_pred HHcCCeEEEEecCCCCCcC
Q 016852 201 AEVGATVVRLKGGDPLVFG 219 (381)
Q Consensus 201 ~~~Gk~VvvL~sGDP~~ys 219 (381)
..++++++++-+||-+..+
T Consensus 82 ~~~~k~~avfgsgd~~~~~ 100 (160)
T PRK09271 82 IGKPPNVAVFGTGETQWGE 100 (160)
T ss_pred hccCCeEEEEecCCCCcCc
Confidence 3478889999999977765
No 111
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=30.63 E-value=1.4e+02 Score=26.55 Aligned_cols=71 Identities=23% Similarity=0.219 Sum_probs=40.1
Q ss_pred HHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHH
Q 016852 148 KVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDF 227 (381)
Q Consensus 148 ~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~ 227 (381)
+++++||+++.|....-.+...+..... ...+..++...+...+.+.+.=+++..|+|..- ....+.
T Consensus 1 ~~~~~adlv~~DG~~i~~~~~~~g~~~~----------~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~---~~~~~~ 67 (172)
T PF03808_consen 1 EALNSADLVLPDGMPIVWAARLLGRPLP----------ERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVL---EKAAAN 67 (172)
T ss_pred ChHHhCCEEecCCHHHHHHHHHcCCCCC----------cccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHH---HHHHHH
Confidence 4789999999987643333444422110 122345666666666655545566777877443 344445
Q ss_pred HHhC
Q 016852 228 LQQK 231 (381)
Q Consensus 228 l~~~ 231 (381)
|++.
T Consensus 68 l~~~ 71 (172)
T PF03808_consen 68 LRRR 71 (172)
T ss_pred HHHH
Confidence 5543
No 112
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=30.61 E-value=1.3e+02 Score=29.82 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=31.0
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchH
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA 243 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS 243 (381)
+.|++-.+|.|+++....++++.+++.|+.+-++-.-+-
T Consensus 131 ~~v~iSl~GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 131 KHVAISLSGEPTLYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred CEEEEeCCccccchhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 356666589999998888999999999998887754443
No 113
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=30.54 E-value=4e+02 Score=26.32 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCeE-EEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHh
Q 016852 192 EIHELLLSFAEVGATV-VRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAE 250 (381)
Q Consensus 192 ei~~~i~~~~~~Gk~V-vvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~ 250 (381)
-+...|..+.++|++. |++.-+.|..-| ......|.+.|+++.+||= +++.++..+
T Consensus 132 tv~~~l~~A~~~~k~~~V~v~EsrP~~~G--~~~a~~L~~~GI~vtlI~D-sav~~~m~~ 188 (310)
T PRK08535 132 AALSVIKTAHEQGKDIEVIATETRPRNQG--HITAKELAEYGIPVTLIVD-SAVRYFMKD 188 (310)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCchhhH--HHHHHHHHHCCCCEEEEeh-hHHHHHHHh
Confidence 3445666666777765 555688897764 6778899999999999995 666666544
No 114
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=30.15 E-value=1.2e+02 Score=25.23 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=31.0
Q ss_pred ccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEE
Q 016852 97 ALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLL 157 (381)
Q Consensus 97 ~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi 157 (381)
.++.++++.++.. .+.+.+||+|. ....++++..+.+++..+-+
T Consensus 39 ~l~~e~l~~l~~~----------------~peiliiGTG~-~~~~~~~~~~~~l~~~gi~v 82 (109)
T cd05560 39 DLTAAHFEALLAL----------------QPEVILLGTGE-RQRFPPPALLAPLLARGIGV 82 (109)
T ss_pred cCCHHHHHHHHhc----------------CCCEEEEecCC-CCCcCCHHHHHHHHHcCCeE
Confidence 5677777776655 25699999997 45566788777777765444
No 115
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.00 E-value=3e+02 Score=22.36 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=15.3
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcC
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKAD 154 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~AD 154 (381)
++|+++|.|.. ..+-......+...+
T Consensus 1 ~~I~i~G~G~S--~~~a~~~~~~l~~~g 26 (128)
T cd05014 1 GKVVVTGVGKS--GHIARKIAATLSSTG 26 (128)
T ss_pred CeEEEEeCcHh--HHHHHHHHHHhhcCC
Confidence 57999999943 233344444455444
No 116
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.79 E-value=1.8e+02 Score=29.42 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=29.5
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCC
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRL 161 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~ 161 (381)
-.++.+.|.|| .+++|..+.+++-.+|+|+.+-.
T Consensus 170 Gs~vLV~GAGP--IGl~t~l~Aka~GA~~VVi~d~~ 203 (354)
T KOG0024|consen 170 GSKVLVLGAGP--IGLLTGLVAKAMGASDVVITDLV 203 (354)
T ss_pred CCeEEEECCcH--HHHHHHHHHHHcCCCcEEEeecC
Confidence 36888999998 67999999999999999998643
No 117
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.55 E-value=3.7e+02 Score=27.49 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=8.8
Q ss_pred cccCHHHHHHHHHH
Q 016852 96 IALQLPELKKLLQV 109 (381)
Q Consensus 96 ~~~~~~el~~~l~~ 109 (381)
.|.+.+++++-|+.
T Consensus 296 lgv~~~~i~~~L~~ 309 (459)
T PRK02705 296 AGLSAEAIAEALRS 309 (459)
T ss_pred cCCCHHHHHHHHHh
Confidence 36666666666655
No 118
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=29.33 E-value=3.1e+02 Score=26.85 Aligned_cols=53 Identities=28% Similarity=0.438 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhC-C-CcEEEEcC
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQK-G-IQVKVIPG 240 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~-g-i~veVIPG 240 (381)
.+.+++.+.+....+.|-+.+.+..|+|++.....++++.+++. + .++.+.-.
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~~~~~i~itTN 103 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALPGIRDLALTTN 103 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcCCCceEEEEcC
Confidence 45678877776666667677888999999998888888888775 2 35665544
No 119
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=29.19 E-value=3.1e+02 Score=27.28 Aligned_cols=67 Identities=22% Similarity=0.208 Sum_probs=40.8
Q ss_pred ccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEe--cCCCCC
Q 016852 140 DLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLK--GGDPLV 217 (381)
Q Consensus 140 elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~--sGDP~~ 217 (381)
---|++++++|++||+|+...... +....+. + ...++.+.| ..+.|+.++ -|+--+
T Consensus 173 a~a~p~vl~AI~~AD~IiiGPgnp--~TSI~P~----L-----------~v~gi~eAL-----~~a~vV~Vsp~Ig~~~v 230 (303)
T PRK13606 173 AKPAPGVLEAIEEADAVIIGPSNP--VTSIGPI----L-----------AVPGIREAL-----TEAPVVAVSPIIGGAPV 230 (303)
T ss_pred CCCCHHHHHHHHhCCEEEECCCcc--HHhhchh----c-----------cchhHHHHH-----hCCCEEEEcCCCCCCcC
Confidence 357899999999999888643321 1222221 0 112344433 345666665 677788
Q ss_pred cCCHHHHHHHH
Q 016852 218 FGRGGEEMDFL 228 (381)
Q Consensus 218 ys~~~~l~~~l 228 (381)
-|++..++...
T Consensus 231 ~GPA~~lm~a~ 241 (303)
T PRK13606 231 SGPAAKLMAAI 241 (303)
T ss_pred CChhHHHHHHc
Confidence 88888777665
No 120
>PRK07475 hypothetical protein; Provisional
Probab=29.16 E-value=79 Score=30.05 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=46.9
Q ss_pred chHHHHHHHH--hcCEEEEcCCCCHHHHhhhCC--CceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 016852 142 LTLKAMKVIQ--KADLLLYDRLVSNDVLDLVAP--NARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLV 217 (381)
Q Consensus 142 LTlkA~~aL~--~ADvVi~~~~~~~~ll~~l~~--~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ 217 (381)
--.++.+.|+ .||.|+........+.+.+.. +..++. ......+.+......+++|++|.+--+.+
T Consensus 66 ~l~~aa~~L~~~G~d~I~~~Cgt~~~~~~~l~~~~~VPv~~----------ss~~~v~~l~~~~~~~~kIGILtt~~t~l 135 (245)
T PRK07475 66 AFVAAARELEAEGVRAITTSCGFLALFQRELAAALGVPVAT----------SSLLQVPLIQALLPAGQKVGILTADASSL 135 (245)
T ss_pred HHHHHHHHHHHcCCCEEEechHHHHHHHHHHHHHcCCCEec----------cHHHHHHHHHHhccCCCeEEEEeCCchhh
Confidence 3455556655 468888766543333333322 222221 22344445544444578999998443445
Q ss_pred cCCHHHHHHHHHhCCCcE-E---EEcCchH
Q 016852 218 FGRGGEEMDFLQQKGIQV-K---VIPGITA 243 (381)
Q Consensus 218 ys~~~~l~~~l~~~gi~v-e---VIPGISS 243 (381)
|. +.|.+.|++. . ++||..-
T Consensus 136 ~~------~~l~~~Gi~~~~~~~~~~g~e~ 159 (245)
T PRK07475 136 TP------AHLLAVGVPPDTSSLPIAGLEE 159 (245)
T ss_pred hH------HHHHhCCCCCCCccccccCccc
Confidence 42 4677788863 3 6777644
No 121
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=28.74 E-value=3.5e+02 Score=27.34 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=60.2
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccc------cCCC----CCCHHHHH
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKT------AGYH----SRTQEEIH 194 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~------~~~~----~~~~eei~ 194 (381)
...+|.+||+|=|+-.-+.-=-..-++.++.|...+.. ..|...+.+. .+.++.. .+.. ....++..
T Consensus 10 ~~~~I~VIGvGg~G~n~v~~m~~~~~~gve~ia~nTD~--q~L~~~~a~~-ki~iG~~~t~GlGaGa~P~vG~~aAee~~ 86 (338)
T COG0206 10 LKARIKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTDA--QALKSSKADR-KILIGESITRGLGAGANPEVGRAAAEESI 86 (338)
T ss_pred cCceEEEEEeCCcchHHHHHHHHhhhCceEEEEeccCH--HHHhccccCe-EEEeccceeeccCCCCCcHHHHHHHHHHH
Confidence 35799999999766654555555666667777765432 2344433222 2322211 0101 11234555
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCcCCHH--HHHHHHHhCC
Q 016852 195 ELLLSFAEVGATVVRLKGGDPLVFGRGG--EEMDFLQQKG 232 (381)
Q Consensus 195 ~~i~~~~~~Gk~VvvL~sGDP~~ys~~~--~l~~~l~~~g 232 (381)
+.|.+.+ +|-+.+++..|.-+=.|++. -+.+.+++.|
T Consensus 87 ~~I~~~l-~g~dmvfitaG~GGGTGtGaaPVvakiake~g 125 (338)
T COG0206 87 EEIEEAL-KGADMVFVTAGMGGGTGTGAAPVVAEIAKELG 125 (338)
T ss_pred HHHHHHh-ccCCeEEEEeeecCCccccccHHHHHHHHhcC
Confidence 6676666 67788999988766666655 4566666654
No 122
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=28.62 E-value=2.9e+02 Score=29.43 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEE-cCCCCHHHHhhhCCCceEEEecc
Q 016852 103 LKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGK 181 (381)
Q Consensus 103 l~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~-~~~~~~~ll~~l~~~~e~i~~~~ 181 (381)
-++++...|.+++. .-.|++++-+ |.|+...--++|...-.-+-+++= +.. .+...++ ..++.
T Consensus 141 yeT~~~aark~f~~-------~L~G~~~lTa-GLGGMgGAQPlA~~mag~v~i~vEvd~~---ri~kR~~--~gyld--- 204 (545)
T TIGR01228 141 YETFAELARQHFGG-------SLKGKWVLTA-GLGGMGGAQPLAVTMNGGVSIAVEVDES---RIDKRLE--TKYCD--- 204 (545)
T ss_pred HHHHHHHHHHhcCC-------CCceeEEEEe-CCCccccccHHHHHHcCceEEEEEECHH---HHHHHHh--cCcce---
Confidence 46777776666632 1357877654 777776666777765544444332 221 1222221 11111
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchH
Q 016852 182 TAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA 243 (381)
Q Consensus 182 ~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS 243 (381)
....+.++.++.+.+..++++.+.+-.-|. ..+++.+|-++|+.++++-=-+|
T Consensus 205 ---~~~~~ldeal~~~~~a~~~~~~~SIg~~GN------aadv~~~l~~r~i~pDlvtDQTS 257 (545)
T TIGR01228 205 ---EQTDSLDEALARAEEAKAEGKPISIGLLGN------AAEVLPELLKRGVVPDVVTDQTS 257 (545)
T ss_pred ---eEcCCHHHHHHHHHHHHHcCCceEEEeecc------HHHHHHHHHHcCCCCCCcCCCCc
Confidence 112367899999999988888888866665 78889988888877776655444
No 123
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=28.61 E-value=7.2e+02 Score=26.45 Aligned_cols=108 Identities=17% Similarity=0.204 Sum_probs=60.8
Q ss_pred CEEEEEecCCCCccc-chHHHHHHHHhc-CEEEE-cCCCCHHHHhhhCCCceEEE-eccccCCCCCCHHHHHHHHHHHHH
Q 016852 127 GNVYLVGTGPGDPDL-LTLKAMKVIQKA-DLLLY-DRLVSNDVLDLVAPNARLLY-VGKTAGYHSRTQEEIHELLLSFAE 202 (381)
Q Consensus 127 g~l~lVGiGPGd~el-LTlkA~~aL~~A-DvVi~-~~~~~~~ll~~l~~~~e~i~-~~~~~~~~~~~~eei~~~i~~~~~ 202 (381)
..+.=||++++.++. --..++++++.. |+.+. |+...+.+...++.++.++- +. + .+.+++.+.+. +
T Consensus 179 ADIIDIG~~st~p~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiINsVs---~---~~~d~~~~l~a---~ 249 (499)
T TIGR00284 179 ADMVALGTGSFDDDPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVIMPD---V---ENAVELASEKK---L 249 (499)
T ss_pred CCEEEECCCcCCCcHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEEECC---c---cchhHHHHHHH---H
Confidence 456677888775642 245677777775 76665 77666666666655666542 11 1 12233333222 2
Q ss_pred cCCeEEEEecCCCCCcCCHHHHHHHHHhCCC-cEEEEcCchH
Q 016852 203 VGATVVRLKGGDPLVFGRGGEEMDFLQQKGI-QVKVIPGITA 243 (381)
Q Consensus 203 ~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi-~veVIPGISS 243 (381)
.|-.++++......-|....+.++.+.+.|+ ++-+=||+..
T Consensus 250 ~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~ 291 (499)
T TIGR00284 250 PEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSP 291 (499)
T ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc
Confidence 2445555543212223334456667778888 7777788874
No 124
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=28.22 E-value=1.5e+02 Score=29.15 Aligned_cols=54 Identities=24% Similarity=0.232 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHH
Q 016852 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAAS 245 (381)
Q Consensus 189 ~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~ 245 (381)
..+++.+.+.+ .|..++.+..|+|++.--..++++.+++.|..+.+.-.-+-+.
T Consensus 60 s~ee~~~~i~e---~g~~~V~i~GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll~ 113 (318)
T TIGR03470 60 SVEECLRAVDE---CGAPVVSIPGGEPLLHPEIDEIVRGLVARKKFVYLCTNALLLE 113 (318)
T ss_pred CHHHHHHHHHH---cCCCEEEEeCccccccccHHHHHHHHHHcCCeEEEecCceehH
Confidence 45666655543 4667888899999999888889999988888777776655444
No 125
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=28.20 E-value=1.7e+02 Score=29.65 Aligned_cols=53 Identities=28% Similarity=0.411 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhC-CCc-EEEE-cCc
Q 016852 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQK-GIQ-VKVI-PGI 241 (381)
Q Consensus 189 ~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~-gi~-veVI-PGI 241 (381)
+.+++.+.+....+.|-+.+.++.|.|++.-...++++.+++. |+. +.+. -|.
T Consensus 91 s~eei~~~i~~~~~~Gv~~I~~tGGEPllr~dl~eli~~l~~~~gi~~i~itTNG~ 146 (373)
T PLN02951 91 SQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSLKGLKTLAMTTNGI 146 (373)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCceEEEeeCcc
Confidence 4677777666566667777888999999987777888888775 764 5554 353
No 126
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=28.07 E-value=4.8e+02 Score=25.60 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCeE-EEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHh
Q 016852 193 IHELLLSFAEVGATV-VRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAE 250 (381)
Q Consensus 193 i~~~i~~~~~~Gk~V-vvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~ 250 (381)
+...|....++|++. |++.-+-|..-| ..+...|.+.|+++.+||= +++.++..+
T Consensus 128 v~~~l~~a~~~~~~f~V~v~EsrP~~~G--~~~a~~L~~~gI~vtlI~D-sa~~~~m~~ 183 (301)
T TIGR00511 128 ALSVIKTAFEQGKDIEVIATETRPRKQG--HITAKELRDYGIPVTLIVD-SAVRYFMKE 183 (301)
T ss_pred HHHHHHHHHHcCCcEEEEEecCCCcchH--HHHHHHHHHCCCCEEEEeh-hHHHHHHHh
Confidence 445566666778876 455688887654 6778899999999999995 666666554
No 127
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=27.62 E-value=3.6e+02 Score=22.36 Aligned_cols=97 Identities=18% Similarity=0.350 Sum_probs=52.9
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcC--EEEEcCCCCH--------HHHhhhCCCceEEEeccccCCCCCCHHHHHHHH
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKAD--LLLYDRLVSN--------DVLDLVAPNARLLYVGKTAGYHSRTQEEIHELL 197 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~AD--vVi~~~~~~~--------~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i 197 (381)
++-+||.-+ +++..--+..+.|.+.. ++....+..+ .+.+ .+...+...+. ...+...+.+
T Consensus 2 siAVvGaS~-~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e-~p~~iDlavv~-------~~~~~~~~~v 72 (116)
T PF13380_consen 2 SIAVVGASD-NPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAE-IPEPIDLAVVC-------VPPDKVPEIV 72 (116)
T ss_dssp EEEEET--S-STTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGG-CSST-SEEEE--------S-HHHHHHHH
T ss_pred EEEEEcccC-CCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccC-CCCCCCEEEEE-------cCHHHHHHHH
Confidence 567888886 66666677777777764 3333322211 1222 22233333221 2456677777
Q ss_pred HHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEE-cC
Q 016852 198 LSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI-PG 240 (381)
Q Consensus 198 ~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVI-PG 240 (381)
.+..+.|-+.+++.+| ....++.+.+++.| ++++ |+
T Consensus 73 ~~~~~~g~~~v~~~~g-----~~~~~~~~~a~~~g--i~vigp~ 109 (116)
T PF13380_consen 73 DEAAALGVKAVWLQPG-----AESEELIEAAREAG--IRVIGPN 109 (116)
T ss_dssp HHHHHHT-SEEEE-TT-----S--HHHHHHHHHTT---EEEESS
T ss_pred HHHHHcCCCEEEEEcc-----hHHHHHHHHHHHcC--CEEEeCC
Confidence 7777788899999999 55667888888874 4455 44
No 128
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=27.57 E-value=3.6e+02 Score=28.88 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCC-CceEEEecc
Q 016852 103 LKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAP-NARLLYVGK 181 (381)
Q Consensus 103 l~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~-~~e~i~~~~ 181 (381)
-+++++..|.+++ + .-.|++++-+ |.|+...--++|...-.-+-+ +.+-.. ..+...++. -...+
T Consensus 140 yeT~~~aark~~g-~------~L~Gk~~lTa-GLGGMgGAQplA~~m~g~v~l-~vEvd~-~ri~kR~~~g~ld~~---- 205 (546)
T PF01175_consen 140 YETFLNAARKHFG-G------DLAGKLFLTA-GLGGMGGAQPLAATMAGGVGL-IVEVDP-SRIEKRLEQGYLDEV---- 205 (546)
T ss_dssp HHHHHHHHHHHST-T------S-TT-EEEEE---STTCCHHHHHHHHTT-EEE-EEES-H-HHHHHHHHTTSSSEE----
T ss_pred hHHHHHHHHHhcC-C------CCcceEEEEe-cccccccchHHHHHhcCceEE-EEEECH-HHHHHHHhCCCeeEE----
Confidence 4778888776666 2 1257887654 666666655666654433333 332211 112222221 11111
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCch
Q 016852 182 TAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGIT 242 (381)
Q Consensus 182 ~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGIS 242 (381)
..+.++.++.+.++.++++.+.+-.-|. ...++.++-++|+.++++-=-+
T Consensus 206 -----~~~ldea~~~~~ea~~~~~~~SIg~~GN------~ad~~~~l~~~~i~pDl~tDQT 255 (546)
T PF01175_consen 206 -----TDDLDEALARAKEARAKKEPLSIGLLGN------AADLWEELVERGIIPDLVTDQT 255 (546)
T ss_dssp -----ESSHHHHHHHHHHHHHTT--EEEEEES-------HHHHHHHHHHTT---SEE---S
T ss_pred -----cCCHHHHHHHHHHhhccCCeeEEEEecc------HHHHHHHHHHcCCCCCcccCCC
Confidence 1367899999999999998888877775 7888888888877666654433
No 129
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=27.49 E-value=6.4e+02 Score=25.31 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=21.6
Q ss_pred CCCCCCCccchhhhHhhhhhhhhcccc
Q 016852 47 SSSSSPFTEKHSFERYQRDQWVYSSLQ 73 (381)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (381)
.+++-|-+..-.++-|+...|.|....
T Consensus 58 ~~~~~~~~~~~~~~h~~~~~~~y~~lA 84 (340)
T PLN02490 58 SSSSRPASQPRFIQHKKEAFWFYRFLS 84 (340)
T ss_pred cccCCcccccchhhhhhcceeEcccee
Confidence 355678888888999999999997653
No 130
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=27.39 E-value=4.3e+02 Score=29.29 Aligned_cols=62 Identities=29% Similarity=0.328 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCeEEEEec----------CCCCCcCCHHHHHHHHHhCCCcEEEEcCc--hHHHHHHHhcCCC
Q 016852 192 EIHELLLSFAEVGATVVRLKG----------GDPLVFGRGGEEMDFLQQKGIQVKVIPGI--TAASGIAAELGIP 254 (381)
Q Consensus 192 ei~~~i~~~~~~Gk~VvvL~s----------GDP~~ys~~~~l~~~l~~~gi~veVIPGI--SS~~aaaA~lGip 254 (381)
++.+.+.+..++|.++..+.. -||.=-+ ..+.++.|++.|+++.++-|= ..+.+.+..+|++
T Consensus 412 ~~~~~~~~~a~~G~~~l~va~~~~~lG~i~l~D~~R~~-~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId 485 (679)
T PRK01122 412 ELDAAVDEVARKGGTPLVVAEDNRVLGVIYLKDIVKPG-IKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD 485 (679)
T ss_pred HHHHHHHHHHhCCCcEEEEEECCeEEEEEEEeccCchh-HHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc
Confidence 344445555667766554432 3443333 557788999999999999995 4567778888884
No 131
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=26.98 E-value=1.5e+02 Score=24.50 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=31.4
Q ss_pred ccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEE
Q 016852 97 ALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLL 157 (381)
Q Consensus 97 ~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi 157 (381)
..+.+++..++.. + ...+.+||+|... ..++++..+.+++..+-+
T Consensus 38 ~l~~~~l~~~~~~----------~-----~peiliiGTG~~~-~~~~~~~~~~l~~~gI~v 82 (109)
T cd00248 38 DLDPEALLPLLAE----------D-----RPDILLIGTGAEI-AFLPRALRAALRAAGIGV 82 (109)
T ss_pred cCCHHHHHHHHhh----------C-----CCCEEEEcCCCCC-CcCCHHHHHHHHHcCCeE
Confidence 5666667666655 0 2669999999754 678888888887765544
No 132
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.96 E-value=5.8e+02 Score=26.27 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 016852 189 TQEEIHELLLSFAEVGATVVRLKGGDPLV 217 (381)
Q Consensus 189 ~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ 217 (381)
+.++..+.+.+.++.| +|+++++|.+.|
T Consensus 411 ~~~~a~~~~~~~~~~g-d~VLlspa~aS~ 438 (458)
T PRK01710 411 SLEEAVKVAKEIAEKG-DIVTLSPACASF 438 (458)
T ss_pred CHHHHHHHHHHhCCCC-CEEEeChhhccc
Confidence 4566666666666555 678888887766
No 133
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=26.56 E-value=1.1e+02 Score=30.76 Aligned_cols=58 Identities=19% Similarity=0.408 Sum_probs=36.4
Q ss_pred CcccchHHHHHHHHhcCEEEEc-CCC-CHHHH-hhhCCCceEEEeccccCCCCCCHHHHHHHHH
Q 016852 138 DPDLLTLKAMKVIQKADLLLYD-RLV-SNDVL-DLVAPNARLLYVGKTAGYHSRTQEEIHELLL 198 (381)
Q Consensus 138 d~elLTlkA~~aL~~ADvVi~~-~~~-~~~ll-~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~ 198 (381)
|-+.=+.+..++|++||+|+.- .-. -++.+ .++.-+++.+.+|-. ...++.++..+|.
T Consensus 121 dGDFrS~E~i~Ll~eADIVVTNPPFSLFrEyv~~Li~~~KkFlIIGN~---NaiTYkeiFplik 181 (336)
T PF13651_consen 121 DGDFRSDECIELLKEADIVVTNPPFSLFREYVAQLIEYDKKFLIIGNI---NAITYKEIFPLIK 181 (336)
T ss_pred CCCcCcHHHHHHHhcCCEEEeCCCcHHHHHHHHHHHHhCCCEEEEecc---ccccHHHHHHHHh
Confidence 3456779999999999999983 321 12233 333446677777632 3346777776663
No 134
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=26.48 E-value=2.3e+02 Score=28.75 Aligned_cols=92 Identities=27% Similarity=0.294 Sum_probs=48.7
Q ss_pred HHHHHhcCEEEEcCCCCH-HHHhhh---CCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHH
Q 016852 147 MKVIQKADLLLYDRLVSN-DVLDLV---APNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGG 222 (381)
Q Consensus 147 ~~aL~~ADvVi~~~~~~~-~ll~~l---~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~ 222 (381)
.+.|++-|+++..++.+- .+++++ ..+..++.+.-. .++-...-.+++.+.++++.||.|.+++---.=|---..
T Consensus 3 f~~i~~~DiLlh~PY~sf~~vv~fl~eAA~DP~V~aIk~T-LYR~a~~S~iv~aLi~AA~nGK~Vtv~vELkARFDEe~N 81 (352)
T PF13090_consen 3 FEQIRKKDILLHHPYESFDPVVDFLREAAEDPDVLAIKIT-LYRVASNSPIVNALIEAAENGKQVTVLVELKARFDEENN 81 (352)
T ss_dssp HHHHHHS-EEEECTTB-TCHHHHHHHHHCC-TTEEEEEEE-ESSS-TT-HHHHHHHHHHHTT-EEEEEESTTSSSTTCCC
T ss_pred hHHhhcCCEEEECCccccHHHHHHHHHHhcCCCccEEEEE-EEecCCCCHHHHHHHHHHHcCCEEEEEEEEeccccHHHH
Confidence 468899999998665442 244444 223333332111 222233447889999999999999999876554432111
Q ss_pred -HHHHHHHhCCCcEEEEcCc
Q 016852 223 -EEMDFLQQKGIQVKVIPGI 241 (381)
Q Consensus 223 -~l~~~l~~~gi~veVIPGI 241 (381)
.-.+.|++.| ++|+=|+
T Consensus 82 i~Wa~~Le~aG--v~ViyG~ 99 (352)
T PF13090_consen 82 IHWAKRLEEAG--VHVIYGV 99 (352)
T ss_dssp CCCCHHHHHCT---EEEE--
T ss_pred hHHHhhHHhcC--eEEEcCC
Confidence 1135677775 4444443
No 135
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.43 E-value=5.3e+02 Score=26.46 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=10.8
Q ss_pred cccCHHHHHHHHHHH
Q 016852 96 IALQLPELKKLLQVL 110 (381)
Q Consensus 96 ~~~~~~el~~~l~~~ 110 (381)
.|.+.+++++-|+..
T Consensus 302 lgi~~~~i~~gL~~~ 316 (460)
T PRK01390 302 LGLSPEEIAAGLASF 316 (460)
T ss_pred cCCCHHHHHHHHHhC
Confidence 477887788777763
No 136
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=26.42 E-value=3.5e+02 Score=26.73 Aligned_cols=54 Identities=22% Similarity=0.105 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCeEE-EEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHH
Q 016852 194 HELLLSFAEVGATVV-RLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAA 249 (381)
Q Consensus 194 ~~~i~~~~~~Gk~Vv-vL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA 249 (381)
...|....++|++.- ++.-+.|...| .....+.|.+.|+++.+|+= |++.+...
T Consensus 140 ~~~l~~A~~~g~~~~V~v~EsrP~~~G-~~~~a~~L~~~gI~vtlI~D-sa~~~~m~ 194 (303)
T TIGR00524 140 LGVIRSAWEDGKRIRVIACETRPRNQG-SRLTAWELMQDGIDVTLITD-SMAAYFMQ 194 (303)
T ss_pred HHHHHHHHHcCCceEEEECCCCCccch-HHHHHHHHHHCCCCEEEECh-hHHHHHcc
Confidence 345555666788764 44578997765 35567788999999999994 55555443
No 137
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=25.99 E-value=2.3e+02 Score=28.22 Aligned_cols=77 Identities=27% Similarity=0.441 Sum_probs=45.6
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCC--CceEEEeccccCCCCCCHHHHHHHHHHHHH-c
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAP--NARLLYVGKTAGYHSRTQEEIHELLLSFAE-V 203 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~--~~e~i~~~~~~~~~~~~~eei~~~i~~~~~-~ 203 (381)
+++.++|+|| .++|+..+.+....+.+|+.+..-.+ +++... .+..+... ..++....+.+.-. .
T Consensus 170 ~~V~V~GaGp--IGLla~~~a~~~Ga~~Viv~d~~~~R--l~~A~~~~g~~~~~~~--------~~~~~~~~~~~~t~g~ 237 (350)
T COG1063 170 GTVVVVGAGP--IGLLAIALAKLLGASVVIVVDRSPER--LELAKEAGGADVVVNP--------SEDDAGAEILELTGGR 237 (350)
T ss_pred CEEEEECCCH--HHHHHHHHHHHcCCceEEEeCCCHHH--HHHHHHhCCCeEeecC--------ccccHHHHHHHHhCCC
Confidence 4899999997 67899888888888888888654322 333322 23333211 01122233333332 2
Q ss_pred CCeEEEEecCCC
Q 016852 204 GATVVRLKGGDP 215 (381)
Q Consensus 204 Gk~VvvL~sGDP 215 (381)
|-++++-.+|.|
T Consensus 238 g~D~vie~~G~~ 249 (350)
T COG1063 238 GADVVIEAVGSP 249 (350)
T ss_pred CCCEEEECCCCH
Confidence 578899889944
No 138
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=25.99 E-value=1.3e+02 Score=29.56 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=40.0
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEE--cCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHc
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY--DRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEV 203 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~--~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~ 203 (381)
+.+|.+||.|.|. .+-+..+...-..++++ +..+.+...+.++....... . .......++..+++.+..+
T Consensus 77 pk~VLiiGgGdG~---tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-d---pRv~i~i~Dg~~~v~~~~~- 148 (282)
T COG0421 77 PKRVLIIGGGDGG---TLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-D---PRVEIIIDDGVEFLRDCEE- 148 (282)
T ss_pred CCeEEEECCCccH---HHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC-C---CceEEEeccHHHHHHhCCC-
Confidence 4699999999874 33444444433445555 34333322333321110000 0 0000112345566655543
Q ss_pred CCeEEEEecCCC
Q 016852 204 GATVVRLKGGDP 215 (381)
Q Consensus 204 Gk~VvvL~sGDP 215 (381)
.-+|.++-+.||
T Consensus 149 ~fDvIi~D~tdp 160 (282)
T COG0421 149 KFDVIIVDSTDP 160 (282)
T ss_pred cCCEEEEcCCCC
Confidence 457888888888
No 139
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=25.92 E-value=1e+02 Score=29.48 Aligned_cols=55 Identities=25% Similarity=0.326 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCeE-EEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHh
Q 016852 193 IHELLLSFAEVGATV-VRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAE 250 (381)
Q Consensus 193 i~~~i~~~~~~Gk~V-vvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~ 250 (381)
+...+....++|+++ |++.-+.|...| ..+++.|.+.|+++.++|= +++.++...
T Consensus 120 v~~~l~~a~~~~~~~~V~v~es~P~~eG--~~~a~~L~~~gi~v~~i~d-~~~~~~m~~ 175 (282)
T PF01008_consen 120 VERFLLSAKKKGKKFRVIVLESRPYNEG--RLMAKELAEAGIPVTLIPD-SAVGYVMPR 175 (282)
T ss_dssp HHHHHHHHHHTTEEEEEEEE--TTTTHH--HTHHHHHHHTT-EEEEE-G-GGHHHHHHC
T ss_pred HHHHHHHHHHcCCeEEEEEccCCcchhh--hhHHHHhhhcceeEEEEec-hHHHHHHHH
Confidence 445566666677776 555688996654 6788899999999999995 666666654
No 140
>PRK10799 metal-binding protein; Provisional
Probab=25.88 E-value=5.7e+02 Score=24.15 Aligned_cols=106 Identities=11% Similarity=0.059 Sum_probs=50.5
Q ss_pred ccCHHHHHHHHHHHHHhhhhccc-CC-C-CCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCC
Q 016852 97 ALQLPELKKLLQVLREKREEDRV-GA-E-KCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPN 173 (381)
Q Consensus 97 ~~~~~el~~~l~~~~~~~~~~~~-~~-~-~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~ 173 (381)
.+++.++ .+.+++.++.... -+ . ...-.+|.++| |-|+ + +-..| .-..||+++....-...+.+....+
T Consensus 136 ~~s~~~l---~~~vk~~l~~~~~~~~~~~~~~i~rVAi~~-GsG~-~-~i~~a--~~~gaD~~ITGd~k~h~~~~A~~~g 207 (247)
T PRK10799 136 PVPGLEL---ASWIEARLGRKPLWCGDTGPEVVQRVAWCT-GGGQ-S-FIDSA--ARFGVDAFITGEVSEQTIHSAREQG 207 (247)
T ss_pred CcCHHHH---HHHHHHHhCCCeEEECCCCCCcccEEEEEC-CchH-H-HHHHH--HHcCCCEEEECCcchHHHHHHHHCC
Confidence 3455454 4444446654422 11 1 23456788885 4343 2 22223 2257999997554333445544445
Q ss_pred ceEEEeccccCCCCCCHHHHHHHHHHHHHc--CCeEEEEecCCC
Q 016852 174 ARLLYVGKTAGYHSRTQEEIHELLLSFAEV--GATVVRLKGGDP 215 (381)
Q Consensus 174 ~e~i~~~~~~~~~~~~~eei~~~i~~~~~~--Gk~VvvL~sGDP 215 (381)
.-++.++.. ....-..+.+.+.+++ +..|.++....|
T Consensus 208 l~li~~GH~-----~sE~~~~~~la~~L~~~~~~~~~~i~~~~~ 246 (247)
T PRK10799 208 LHFYAAGHH-----ATERGGIRALSEWLNENTDLDVTFIDIPNP 246 (247)
T ss_pred CeEEEcCch-----HHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Confidence 556655532 1122223444444432 445666655544
No 141
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=25.83 E-value=3.1e+02 Score=25.36 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=56.7
Q ss_pred CEEEEEe-cCCCCcccchHHHHHHHH---hcCEEEEcC-CCCH------------HHHhhhCCCceEEEeccccCCCC--
Q 016852 127 GNVYLVG-TGPGDPDLLTLKAMKVIQ---KADLLLYDR-LVSN------------DVLDLVAPNARLLYVGKTAGYHS-- 187 (381)
Q Consensus 127 g~l~lVG-iGPGd~elLTlkA~~aL~---~ADvVi~~~-~~~~------------~ll~~l~~~~e~i~~~~~~~~~~-- 187 (381)
..+||-| .|-|=..+|.--+.++.+ +..+++... .... .+.+.+. ...++.++.......
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~~ 113 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGKQ 113 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCch
Confidence 4566654 344545566666656665 344555531 1111 1222233 345554432211111
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcC-CHHHHHHHHHhCCCcEEEEc
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFG-RGGEEMDFLQQKGIQVKVIP 239 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys-~~~~l~~~l~~~gi~veVIP 239 (381)
..++++...+-.....|+.+++.....|.-.. ....+..+|. .|.-+++-|
T Consensus 114 ~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~-~Gl~~~l~~ 165 (219)
T PF00308_consen 114 RTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLS-WGLVVELQP 165 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHH-CSEEEEE--
T ss_pred HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHh-hcchhhcCC
Confidence 23566777777777788888887778887544 4445666764 366666644
No 142
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=25.36 E-value=1.6e+02 Score=25.74 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcC
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPG 240 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPG 240 (381)
.+.+++.+.|.+.. ..-.-+.++.|+ +.+.....+++.+++.|+.+.+.-|
T Consensus 46 lt~eel~~~I~~~~-~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg 96 (147)
T TIGR02826 46 LTPEYLTKTLDKYR-SLISCVLFLGGE-WNREALLSLLKIFKEKGLKTCLYTG 96 (147)
T ss_pred CCHHHHHHHHHHhC-CCCCEEEEechh-cCHHHHHHHHHHHHHCCCCEEEECC
Confidence 46677877776643 223457788999 6555566778888877777766655
No 143
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=25.31 E-value=5.6e+02 Score=23.84 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhC-CCcEEEEcCchHHHHHHHh
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQK-GIQVKVIPGITAASGIAAE 250 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~-gi~veVIPGISS~~aaaA~ 250 (381)
.+.+++..+.......|-+.+.|..||-..+..-.++++.+++. +.++.+==||++..-+...
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l 194 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEI 194 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHH
Confidence 46777777666665678899999988766665556777777654 6678777888775555443
No 144
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=23.75 E-value=2e+02 Score=27.17 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=35.5
Q ss_pred cCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEE
Q 016852 98 LQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLL 177 (381)
Q Consensus 98 ~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i 177 (381)
+++.|+.+.+++ .++.....-......+|.=|++-+|....+-.+|. =..||+++..........+....+.-++
T Consensus 142 ~s~~el~~~vk~---~l~~~~vr~~g~~~~~v~rVav~~GsG~~~i~~a~--~~g~D~~ITGd~~~h~~~~a~~~g~~lI 216 (241)
T PF01784_consen 142 MSLEELAERVKE---KLGLPGVRVVGDPDKKVKRVAVCGGSGGSFIEEAA--EAGADVYITGDIKYHDAQDAKENGINLI 216 (241)
T ss_dssp EEHHHHHHHHHH---HTTSS-EEEESCTTSEEEEEEEECSSSGGGHHHHH--HTTSSEEEESS--HHHHHHHHHCTSEEE
T ss_pred CCHHHHHHHHHH---HcCCCcEEecCCCCCcccEEEEEcccCccHHHHHH--hCCCeEEEEccCcHHHHHHHHHCCCEEE
Confidence 566665544444 66543221111222333333333333332222322 2489999986654444555555556666
Q ss_pred Eecc
Q 016852 178 YVGK 181 (381)
Q Consensus 178 ~~~~ 181 (381)
.++.
T Consensus 217 ~~gH 220 (241)
T PF01784_consen 217 DAGH 220 (241)
T ss_dssp E--H
T ss_pred EcCC
Confidence 6653
No 145
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=22.86 E-value=2.8e+02 Score=22.93 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=30.8
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCc
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGI 241 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGI 241 (381)
-.|+++-.|....+- ...+.+.|++.|+.+++.+=.
T Consensus 53 peiliiGTG~~~~~~-~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 53 PEVILLGTGERQRFP-PPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCEEEEecCCCCCcC-CHHHHHHHHHcCCeEEEECHH
Confidence 468888899998887 678889999999999998854
No 146
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.81 E-value=4.1e+02 Score=21.41 Aligned_cols=48 Identities=8% Similarity=-0.122 Sum_probs=31.8
Q ss_pred HHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHH
Q 016852 197 LLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246 (381)
Q Consensus 197 i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~a 246 (381)
+.+.+.+.++|.++-.|. -+..+.++...+...|..+..+++......
T Consensus 6 ~~~~i~~~~~i~i~g~g~--s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 53 (139)
T cd05013 6 AVDLLAKARRIYIFGVGS--SGLVAEYLAYKLLRLGKPVVLLSDPHLQLM 53 (139)
T ss_pred HHHHHHhCCEEEEEEcCc--hHHHHHHHHHHHHHcCCceEEecCHHHHHH
Confidence 333444557888887885 334566677777777888888887655443
No 147
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=22.79 E-value=1.1e+02 Score=21.81 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=25.6
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcCEEE
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLL 157 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi 157 (381)
..|.+||.|..+...+..+..++|.++++=+
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v 32 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNI 32 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCE
Confidence 4688999999887788999999999886444
No 148
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=22.78 E-value=52 Score=32.74 Aligned_cols=37 Identities=38% Similarity=0.561 Sum_probs=31.7
Q ss_pred ccccCCCCCCcceeeeecCCCCCCCCCCCCCccchhhhHhhh
Q 016852 23 IKQFNPISPKSFICSLHFNDTSSSSSSSSPFTEKHSFERYQR 64 (381)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (381)
....||+|-.-|.|..+|-- ..-|||.|-.|.-|||=
T Consensus 355 p~~~~~ks~~Cf~CQ~~fp~-----~~~~~~~~~~ss~rY~C 391 (421)
T COG5151 355 PEGTNPKSTHCFVCQGPFPK-----PPVSPFDESTSSGRYQC 391 (421)
T ss_pred cCCCCCCCccceeccCCCCC-----CCCCcccccccccceec
Confidence 34889999999999999953 56899999999999984
No 149
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=22.77 E-value=6.3e+02 Score=25.08 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=17.8
Q ss_pred ccchHHHHHHHHhcCEEEEcC
Q 016852 140 DLLTLKAMKVIQKADLLLYDR 160 (381)
Q Consensus 140 elLTlkA~~aL~~ADvVi~~~ 160 (381)
-..++.++++|++||+|+++.
T Consensus 162 ~~~~~~~l~AI~~ADlIvlgP 182 (309)
T cd07044 162 ASPSREVLEAIEKADNIVIGP 182 (309)
T ss_pred CCCCHHHHHHHHhCCEEEECC
Confidence 457899999999999998743
No 150
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=22.68 E-value=2.3e+02 Score=29.28 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHH----cCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEE
Q 016852 189 TQEEIHELLLSFAE----VGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKV 237 (381)
Q Consensus 189 ~~eei~~~i~~~~~----~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veV 237 (381)
+.+++.+.+.+... .+.-|-+.-.|||+.+.-..++++.+++.|+.+-+
T Consensus 55 t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI 107 (404)
T TIGR03278 55 PPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHL 107 (404)
T ss_pred CHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEE
Confidence 56677776666443 23344444477999999999999999999988776
No 151
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=22.62 E-value=2.2e+02 Score=22.84 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHcCC----eEEEEe-cCCCCCcCCHHHHHHHHHh------CCCcEEEEcC
Q 016852 187 SRTQEEIHELLLSFAEVGA----TVVRLK-GGDPLVFGRGGEEMDFLQQ------KGIQVKVIPG 240 (381)
Q Consensus 187 ~~~~eei~~~i~~~~~~Gk----~VvvL~-sGDP~~ys~~~~l~~~l~~------~gi~veVIPG 240 (381)
...++++.+.+.+..+-.+ .+=.+- -|||+.++.-.+|.++++- .++-+.|.||
T Consensus 19 ~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~ihvfp~ 83 (83)
T cd06404 19 SISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSELNIHVFPG 83 (83)
T ss_pred CcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccEEEEecCC
Confidence 4567788877776654333 233333 5999999999888776653 2567788776
No 152
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=22.59 E-value=6.9 Score=25.29 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=12.9
Q ss_pred CCCCCcccccccccccc
Q 016852 79 PTSPSVSLDADSTRRND 95 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ 95 (381)
||.|+.|.++..|| ++
T Consensus 10 STnG~sP~la~~iR-~~ 25 (30)
T PF14824_consen 10 STNGKSPRLARLIR-KE 25 (30)
T ss_dssp EESSS-HHHHHHHH-HH
T ss_pred ECCCCChHHHHHHH-HH
Confidence 78999999999999 44
No 153
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=22.28 E-value=1.1e+02 Score=22.35 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=25.7
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcCEEE
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLL 157 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi 157 (381)
.+|.+||.|+-+...+..+..++|.+.++=+
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v 32 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEI 32 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCE
Confidence 5789999999777778889999998886554
No 154
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=22.24 E-value=1.6e+02 Score=31.34 Aligned_cols=62 Identities=21% Similarity=0.361 Sum_probs=36.3
Q ss_pred HHHHHHhcCEEEEcCCCC-----------HHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCC
Q 016852 146 AMKVIQKADLLLYDRLVS-----------NDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGD 214 (381)
Q Consensus 146 A~~aL~~ADvVi~~~~~~-----------~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGD 214 (381)
|..++++||+-+++...+ +.+.++...++-++.+-++ -.+++++ -+++-+..|+
T Consensus 225 aa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHD--------LavLD~l-------sD~vhI~YG~ 289 (591)
T COG1245 225 AAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD--------LAVLDYL-------SDFVHILYGE 289 (591)
T ss_pred HHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEech--------HHHHHHh-------hheeEEEecC
Confidence 557889999999975332 1233444444444443211 1233333 2567778999
Q ss_pred CCCcCCHH
Q 016852 215 PLVFGRGG 222 (381)
Q Consensus 215 P~~ys~~~ 222 (381)
|+.||...
T Consensus 290 pg~YGvvs 297 (591)
T COG1245 290 PGVYGVVS 297 (591)
T ss_pred CccceEec
Confidence 99999543
No 155
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=22.18 E-value=5.1e+02 Score=22.23 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=49.6
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcCEEE---EcCCCCHHHHhhhCCCceEEEecccc--CCCCCCHHHHHHHHHHHH
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLL---YDRLVSNDVLDLVAPNARLLYVGKTA--GYHSRTQEEIHELLLSFA 201 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi---~~~~~~~~ll~~l~~~~e~i~~~~~~--~~~~~~~eei~~~i~~~~ 201 (381)
..+.+-|.-.||.+.+=....+.|...++-+ -......... .. ...++...... +.......++.+.+...-
T Consensus 3 ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~~~~~--~~-~d~~~~g~~t~~~ge~~~~~~~f~~~~~~~~ 79 (151)
T COG0716 3 KILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKDDLL--ES-YDELLLGTPTWGAGELPDDWYDFIEELEPID 79 (151)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcchhhh--cc-CCEEEEEeCCCCCCcCCccHHHHHHHhcccC
Confidence 3445568889999999988889998875333 1222211111 11 12222221111 111123344444444423
Q ss_pred HcCCeEEEEecCCCCCcC
Q 016852 202 EVGATVVRLKGGDPLVFG 219 (381)
Q Consensus 202 ~~Gk~VvvL~sGDP~~ys 219 (381)
-.++.|+++-.||-..++
T Consensus 80 ~~~k~~a~~g~gd~~~~~ 97 (151)
T COG0716 80 FKGKLVAVFGLGDQSYYG 97 (151)
T ss_pred cCCceEEEEeccccccch
Confidence 478899999999988876
No 156
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=21.78 E-value=7e+02 Score=23.74 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecC---CCCCcCCHHHHHHHHHhCCCcEEEEcCc
Q 016852 190 QEEIHELLLSFAEVGATVVRLKGG---DPLVFGRGGEEMDFLQQKGIQVKVIPGI 241 (381)
Q Consensus 190 ~eei~~~i~~~~~~Gk~VvvL~sG---DP~~ys~~~~l~~~l~~~gi~veVIPGI 241 (381)
.+...+.+...++.|++|++++.| |+- ...++.+.+++.|..+.+-+|.
T Consensus 71 ~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~---~~~~L~~aA~~~g~~l~v~sga 122 (265)
T PRK13304 71 VNAVEEVVPKSLENGKDVIIMSVGALADKE---LFLKLYKLAKENNCKIYLPSGA 122 (265)
T ss_pred hHHHHHHHHHHHHcCCCEEEEchHHhcCHH---HHHHHHHHHHHcCCEEEEeCch
Confidence 445556777777889999887765 332 2346777778888877775553
No 157
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=21.70 E-value=1.9e+02 Score=26.96 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHc---CCeEEEEecCCCCCcCCH-HHHHHHHHhCCCcEEEEc
Q 016852 188 RTQEEIHELLLSFAEV---GATVVRLKGGDPLVFGRG-GEEMDFLQQKGIQVKVIP 239 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~---Gk~VvvL~sGDP~~ys~~-~~l~~~l~~~gi~veVIP 239 (381)
.+.+++.+.+...... ....+.++.|+|++.-.. .++++.+++.|+.+-+.-
T Consensus 51 lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~T 106 (246)
T PRK11145 51 VTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDT 106 (246)
T ss_pred cCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEEC
Confidence 3567777776554321 112455689999997664 478889998898876664
No 158
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.67 E-value=4.5e+02 Score=26.71 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=7.4
Q ss_pred CCcEEEEcCchHHH
Q 016852 232 GIQVKVIPGITAAS 245 (381)
Q Consensus 232 gi~veVIPGISS~~ 245 (381)
|.-|-+.||-+|+.
T Consensus 382 gd~VLlsp~~~s~d 395 (418)
T PRK00683 382 GDVILLSPGCASFD 395 (418)
T ss_pred CCEEEECchhcccc
Confidence 33455566655554
No 159
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=21.66 E-value=4.5e+02 Score=21.82 Aligned_cols=91 Identities=16% Similarity=0.263 Sum_probs=50.1
Q ss_pred chHHHHHHHHh-cCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCC
Q 016852 142 LTLKAMKVIQK-ADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGR 220 (381)
Q Consensus 142 LTlkA~~aL~~-ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~ 220 (381)
+.....+.|++ .++.+.+....+.+.+.++ +++.+...... ...+++++ .+..=|-|+....|=-.+
T Consensus 7 ~~~~~~~~l~~~~~v~~~~~~~~~~~~~~l~-~~d~ii~~~~~----~~~~~~l~----~~~~Lk~I~~~~~G~d~i--- 74 (133)
T PF00389_consen 7 LPDEEIERLEEGFEVEFCDSPSEEELAERLK-DADAIIVGSGT----PLTAEVLE----AAPNLKLISTAGAGVDNI--- 74 (133)
T ss_dssp -SHHHHHHHHHTSEEEEESSSSHHHHHHHHT-TESEEEESTTS----TBSHHHHH----HHTT-SEEEESSSSCTTB---
T ss_pred CCHHHHHHHHCCceEEEeCCCCHHHHHHHhC-CCeEEEEcCCC----CcCHHHHh----ccceeEEEEEcccccCcc---
Confidence 56677888888 6777777554445555555 45555443211 01123333 332323344444553221
Q ss_pred HHHHHHHHHhCCCcEEEEcCchHHHHH
Q 016852 221 GGEEMDFLQQKGIQVKVIPGITAASGI 247 (381)
Q Consensus 221 ~~~l~~~l~~~gi~veVIPGISS~~aa 247 (381)
-++.+.++|+.|--.||..+-..|
T Consensus 75 ---d~~~a~~~gI~V~n~~g~~~~aVA 98 (133)
T PF00389_consen 75 ---DLEAAKERGIPVTNVPGYNAEAVA 98 (133)
T ss_dssp ----HHHHHHTTSEEEE-TTTTHHHHH
T ss_pred ---cHHHHhhCeEEEEEeCCcCCcchh
Confidence 257888899999999998874444
No 160
>PRK09875 putative hydrolase; Provisional
Probab=21.64 E-value=7.7e+02 Score=24.14 Aligned_cols=130 Identities=13% Similarity=0.071 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHcCC-----eEEEE-ecCC-C-CCcCCHHHHHHHH----HhCCCcEEEEcCch----HHHHHHHhc
Q 016852 188 RTQEEIHELLLSFAEVGA-----TVVRL-KGGD-P-LVFGRGGEEMDFL----QQKGIQVKVIPGIT----AASGIAAEL 251 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk-----~VvvL-~sGD-P-~~ys~~~~l~~~l----~~~gi~veVIPGIS----S~~aaaA~l 251 (381)
...+++.+.+.+.+.+|- +.+++ ..|. . .+-..-.++++.. ++-|.+|.+.++.. -..-.+...
T Consensus 96 ~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~il~e~ 175 (292)
T PRK09875 96 RSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAH 175 (292)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCccchHHHHHHHHHc
Confidence 356777777777666542 33555 4443 2 2333333333322 23388888887665 234455667
Q ss_pred CCCCccCcccceeEEecCCCCCCCCChHHHHHHhcCCCCcEEEEcC--------CCCHHHHHHHHHHCCCCCCceeeeEe
Q 016852 252 GIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMG--------LSTLPSLALKLMHHGLPPHTPAAAIE 323 (381)
Q Consensus 252 Gipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~l~~~~~tlVIl~~--------~~~~~~Ia~~L~~~G~~~~t~v~v~e 323 (381)
|+++.+ ++-.|-- ...+... ...+++.+ ..+=++. .....+....|.+.||.+. +.+..
T Consensus 176 Gvd~~r--------vvi~H~d-~~~d~~~-~~~l~~~G-~~l~fD~~g~~~~~pd~~r~~~i~~L~~~Gy~dr--ilLS~ 242 (292)
T PRK09875 176 GVDLSR--------VTVGHCD-LKDNLDN-ILKMIDLG-AYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNR--VMLSM 242 (292)
T ss_pred CcCcce--------EEEeCCC-CCCCHHH-HHHHHHcC-CEEEeccCCCcccCCHHHHHHHHHHHHhcCCCCe--EEEeC
Confidence 888763 4556642 1223333 33444433 3333321 1124566777778898764 77777
Q ss_pred cCCCCCc
Q 016852 324 RGTTPQQ 330 (381)
Q Consensus 324 ~lg~~dE 330 (381)
+++..+.
T Consensus 243 D~~~~~~ 249 (292)
T PRK09875 243 DITRRSH 249 (292)
T ss_pred CCCCccc
Confidence 8876643
No 161
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=21.52 E-value=2e+02 Score=26.75 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHH---HHcCCeEEEEecCCCCCcCCH-HHHHHHHHhCCCcEEEEcC
Q 016852 188 RTQEEIHELLLSF---AEVGATVVRLKGGDPLVFGRG-GEEMDFLQQKGIQVKVIPG 240 (381)
Q Consensus 188 ~~~eei~~~i~~~---~~~Gk~VvvL~sGDP~~ys~~-~~l~~~l~~~gi~veVIPG 240 (381)
.+.+++.+.+.+. .+.+..-+-++.|+|+++... ..+++.+++.|+.+-+.-.
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTn 75 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETA 75 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECC
Confidence 3567777766543 222223577799999998764 5788889999987777543
No 162
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=21.46 E-value=1.9e+02 Score=24.87 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=37.8
Q ss_pred ccccccccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEE
Q 016852 91 TRRNDIALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLL 157 (381)
Q Consensus 91 ~~~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi 157 (381)
++ +-..++.+.++++|+.. +--.|.+||+|. +...+..+-..+++.+.+=+
T Consensus 49 v~-~~~~Lt~e~f~~vl~~a--------------~~~EilliGTG~-~~rf~p~~l~aal~~~gIsv 99 (127)
T COG3737 49 VA-TLSDLTPEDFERVLAEA--------------PDVEILLIGTGA-RLRFPPPKLRAALKAAGISV 99 (127)
T ss_pred cc-ChhhCCHHHHHHHHhcC--------------CCceEEEEecCc-cccCCCHHHHHHHHHcCCcc
Confidence 44 44567777788888772 125899999996 67789999999999887644
No 163
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=21.31 E-value=2.3e+02 Score=29.20 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCC------cEEEEcCchHHHHHHHhcCCCCccCcccc
Q 016852 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGI------QVKVIPGITAASGIAAELGIPLTHRGVAN 262 (381)
Q Consensus 189 ~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi------~veVIPGISS~~aaaA~lGipl~~~~~~~ 262 (381)
+.++..+.+ +.+ .+..+.++.-|-|+|+..|...++.+++.+- ++.+.--..-+.-.++.+|..+
T Consensus 183 ~~~~A~~i~-~~l-~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~------- 253 (391)
T PRK13307 183 DLEEVERVL-SQL-PKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADA------- 253 (391)
T ss_pred CHHHHHHHH-Hhc-ccccceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCE-------
Confidence 445554433 333 2223668899999999998989988887642 2333333333344456666543
Q ss_pred eeEEecCCCCCCCCChHHHHHHhcCCCCcEEE-EcCCCCHHHHHHHH
Q 016852 263 SVRFLTGHSRKGGTDPLFVAENAADPDSTLVV-YMGLSTLPSLALKL 308 (381)
Q Consensus 263 ~v~ivs~hgr~~~~~~~~l~~~l~~~~~tlVI-l~~~~~~~~Ia~~L 308 (381)
++.|+...........+.+.+.+.-+++ +..+.++.+..+.+
T Consensus 254 ----vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l 296 (391)
T PRK13307 254 ----VVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESL 296 (391)
T ss_pred ----EEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHh
Confidence 3445432211112233444444444444 44555665555555
No 164
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=21.26 E-value=6e+02 Score=23.96 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=34.1
Q ss_pred CCCcCCHHHHHHHHHhCCCcEEEEcCc--hHHHHHHHhcCCCCcc
Q 016852 215 PLVFGRGGEEMDFLQQKGIQVKVIPGI--TAASGIAAELGIPLTH 257 (381)
Q Consensus 215 P~~ys~~~~l~~~l~~~gi~veVIPGI--SS~~aaaA~lGipl~~ 257 (381)
|-+--...+|+.+|+++|..+-++.|- .-+...+..+|+|..+
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n 131 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSN 131 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhh
Confidence 444444568889999999999999994 4577789999999864
No 165
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.23 E-value=1.5e+02 Score=28.76 Aligned_cols=68 Identities=26% Similarity=0.356 Sum_probs=43.9
Q ss_pred CCCCCCcccccccccccccccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEE-EEEecCCCCccc--chHHHHHHHHhcC
Q 016852 78 EPTSPSVSLDADSTRRNDIALQLPELKKLLQVLREKREEDRVGAEKCGPGNV-YLVGTGPGDPDL--LTLKAMKVIQKAD 154 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l-~lVGiGPGd~el--LTlkA~~aL~~AD 154 (381)
|.+-|+.|..+|.-- .+..+.+-+..+.+.. .|.. ..| ++|.-|. ||.. +|++-.+.|++||
T Consensus 4 ~~~~~~~~~~~~~~l--~Vvts~~pl~~~v~~I---------~Gd~---v~V~~Lip~g~-dPH~ye~~p~d~~~l~~Ad 68 (287)
T cd01137 4 CASLGSSPATAASKL--KVVATFSILADIARNI---------AGDR---VNVTSIVPPGA-DPHEYEPTPSDIKKLSKAD 68 (287)
T ss_pred HhhcccchhhccCCC--eEEEEChHHHHHHHHH---------cCCe---eEEEEecCCCC-CccCCCCCHHHHHHHHhCC
Confidence 555677777776422 2677888888888873 3322 223 3443332 3433 7999999999999
Q ss_pred EEEEcC
Q 016852 155 LLLYDR 160 (381)
Q Consensus 155 vVi~~~ 160 (381)
+|++-.
T Consensus 69 lvv~~G 74 (287)
T cd01137 69 LILYNG 74 (287)
T ss_pred EEEEcC
Confidence 999843
No 166
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.18 E-value=4.3e+02 Score=27.43 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=81.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHH--HHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccc
Q 016852 185 YHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGG--EEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVAN 262 (381)
Q Consensus 185 ~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~--~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~ 262 (381)
...++.+++.+.......+|-.-+++++-|.+-||+-- .+-..+.+ -+++|| +.+..++|+.--
T Consensus 213 l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~k---lv~~iP-----e~cmlr~gmTnp------ 278 (547)
T KOG4355|consen 213 LASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWK---LVEVIP-----ESCMLRAGMTNP------ 278 (547)
T ss_pred cccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHH---HHHhcc-----hhhhhhhcCCCC------
Confidence 34578899999998888898888999999999998642 33333333 467888 455666666432
Q ss_pred eeEEecCCCCCCCCChHHHHHHhcCCCCcEEEEcCC------------------CCHHHHHHHHHHCCCCCCceeeeEec
Q 016852 263 SVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGL------------------STLPSLALKLMHHGLPPHTPAAAIER 324 (381)
Q Consensus 263 ~v~ivs~hgr~~~~~~~~l~~~l~~~~~tlVIl~~~------------------~~~~~Ia~~L~~~G~~~~t~v~v~e~ 324 (381)
.++-.| ++.+....++.....|+..+ ...+.+.+.|.+. .+ . +.++.+
T Consensus 279 --P~ileh--------l~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~Lter-VP-g--i~IATD 344 (547)
T KOG4355|consen 279 --PYILEH--------LEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTER-VP-G--ITIATD 344 (547)
T ss_pred --chHHHH--------HHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhh-CC-C--cEEeee
Confidence 122222 22233444455555555441 2356788888886 33 2 444443
Q ss_pred --CCCCCcEEEEEehhhHHHhhccCCCCCcEEEE
Q 016852 325 --GTTPQQRIVFSELKDLADKIGVEELVSPTLII 356 (381)
Q Consensus 325 --lg~~dErI~~~tL~eL~~~l~~~~~~~~~vii 356 (381)
+|.|.|. .-+.+|-++.. .+++.|++.|
T Consensus 345 iIcgFPtET--deDFeeTmeLv--~kYKFPslfI 374 (547)
T KOG4355|consen 345 IICGFPTET--DEDFEETMELV--RKYKFPSLFI 374 (547)
T ss_pred eeecCCCCc--hHHHHHHHHHH--HHccCchhhh
Confidence 6778774 12233322222 2456666654
No 167
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=21.13 E-value=9.1e+02 Score=24.78 Aligned_cols=103 Identities=21% Similarity=0.297 Sum_probs=51.7
Q ss_pred cccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHH--hcCEEEE-cCCCC----HHHHh
Q 016852 96 IALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQ--KADLLLY-DRLVS----NDVLD 168 (381)
Q Consensus 96 ~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~--~ADvVi~-~~~~~----~~ll~ 168 (381)
-+.+...++..|+.++. .. ....+.++|+| ++.+....+..+.+. .+|.|+. ..... ..+..
T Consensus 338 y~~NP~s~~aal~~l~~---~~-------~~r~i~VlGlg-~~~~~~~~~~~~~~~~~~~d~vi~~g~~~~~~~~~~~~~ 406 (464)
T TIGR01085 338 YAHTPDALEKALRTLRK---HK-------DGRLIVVFGCG-GDRDRGKRPLMGAIAEQLADLVILTSDNPRGEDPEQIIA 406 (464)
T ss_pred CCCCHHHHHHHHHHHHh---hC-------CCcEEEEECCC-CCCCcchhHHHHHHHHhcCCEEEEeCCCcCCCCHHHHHH
Confidence 44555557777777532 10 12478888977 355554444444442 3687764 32211 11211
Q ss_pred -h---hCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEe-cCCCCCc
Q 016852 169 -L---VAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLK-GGDPLVF 218 (381)
Q Consensus 169 -~---l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~-sGDP~~y 218 (381)
. +....+...+ .+.++..+.+.+.++.| +++++. .||.-+.
T Consensus 407 ~~~~~~~~~~~~~~~--------~~~~~a~~~~~~~~~~~-d~VLv~G~g~~~~~ 452 (464)
T TIGR01085 407 DILAGISEKEKVVII--------ADRRQAIRYAISNAKAG-DVVLIAGKGHEDYQ 452 (464)
T ss_pred HHHhcccCCCcEEEE--------CCHHHHHHHHHHhcCCC-CEEEEEEcCCcccE
Confidence 1 1111111111 24667777777777665 555554 8876543
No 168
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=20.94 E-value=6e+02 Score=24.01 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhhhccc--CC-CCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEe
Q 016852 103 LKKLLQVLREKREEDRV--GA-EKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYV 179 (381)
Q Consensus 103 l~~~l~~~~~~~~~~~~--~~-~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~ 179 (381)
++++++.+++.++.+.. .+ ....-.+|-++| |-|+ .++ ..|. -+.||+++........+++....+.-++.+
T Consensus 141 ~~~~~~~vk~~l~~~~vr~~~~~~~~i~rVAi~~-GsG~-~~~-~~a~--~~gaD~~ITGd~k~h~~~~A~~~gi~li~~ 215 (249)
T TIGR00486 141 SLEEVLEIKKVLNVKPLLVVKNGPEYVKKVAVVS-GSGL-SFI-MKAL--REGVDAYITGDLSHHTAHLARELGLNVIDA 215 (249)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCceeEEEEEc-CchH-HHH-HHHH--HcCCCEEEecCCchHHHHHHHHCCCEEEEc
Confidence 44455555556654322 11 223345777774 3243 221 1222 357999997554444445554445556655
Q ss_pred c
Q 016852 180 G 180 (381)
Q Consensus 180 ~ 180 (381)
+
T Consensus 216 g 216 (249)
T TIGR00486 216 G 216 (249)
T ss_pred C
Confidence 5
No 169
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=20.88 E-value=6.4e+02 Score=26.47 Aligned_cols=29 Identities=31% Similarity=0.196 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCCCCc
Q 016852 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVF 218 (381)
Q Consensus 189 ~~eei~~~i~~~~~~Gk~VvvL~sGDP~~y 218 (381)
+.++..+.+.+.+..| ++++|+++...|-
T Consensus 399 ~le~Av~~a~~~a~~g-d~VLLSPacASfD 427 (448)
T COG0771 399 TLEEAVQLARELAQPG-DVVLLSPACASFD 427 (448)
T ss_pred cHHHHHHHHHHhhcCC-CeEEEcccccchh
Confidence 5677777777777665 7799999988773
No 170
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.85 E-value=7.6e+02 Score=25.59 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=9.9
Q ss_pred ccccCHHHHHHHHHH
Q 016852 95 DIALQLPELKKLLQV 109 (381)
Q Consensus 95 ~~~~~~~el~~~l~~ 109 (381)
..+...+++++-|..
T Consensus 289 ~lgi~~~~i~~~L~~ 303 (454)
T PRK01368 289 IIGVEPKKILESISS 303 (454)
T ss_pred HcCCCHHHHHHHHHh
Confidence 336777777766666
No 171
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=20.83 E-value=3.9e+02 Score=20.41 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHH-HHHHhCCCcEEEEc
Q 016852 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEM-DFLQQKGIQVKVIP 239 (381)
Q Consensus 189 ~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~-~~l~~~gi~veVIP 239 (381)
+.+.+.+.|.....+...++++..|.|-= .-.+. +..++.|++++.+|
T Consensus 16 D~~~i~~~Ld~~~~~~~~~~lvhGga~~G---aD~iA~~wA~~~gv~~~~~~ 64 (71)
T PF10686_consen 16 DHELIWAALDKVHARHPDMVLVHGGAPKG---ADRIAARWARERGVPVIRFP 64 (71)
T ss_pred cHHHHHHHHHHHHHhCCCEEEEECCCCCC---HHHHHHHHHHHCCCeeEEeC
Confidence 44556566655555556778888888521 22222 35566788888776
No 172
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=20.79 E-value=2.7e+02 Score=23.51 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=30.4
Q ss_pred cCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcC
Q 016852 203 VGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPG 240 (381)
Q Consensus 203 ~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPG 240 (381)
.+-.|+++-.|..+.+-...++++.+.+.|+++++-+=
T Consensus 57 ~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T 94 (117)
T cd05126 57 EGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPT 94 (117)
T ss_pred cCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcCh
Confidence 34568888899998766677888899999999998664
No 173
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=20.62 E-value=3.7e+02 Score=29.78 Aligned_cols=78 Identities=15% Similarity=0.055 Sum_probs=47.0
Q ss_pred eeEEecCCCCCCCCChHHHHHHhcCCCCcEEEEcCCC--CH-HHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhh
Q 016852 263 SVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLS--TL-PSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKD 339 (381)
Q Consensus 263 ~v~ivs~hgr~~~~~~~~l~~~l~~~~~tlVIl~~~~--~~-~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~e 339 (381)
++.+|+.+.-. ..+.. .+..+.+..+.+|+..... .+ ..+++.|.+.|+.. .. .-+.++|.+++.+..++.++
T Consensus 571 ~~~VId~~~lk-PlD~~-~i~~~~k~~~~vVtvEe~~~GG~Gs~va~~l~~~~~~~-~~-~~v~~~Gi~d~F~~~G~~~~ 646 (677)
T PLN02582 571 SATVADARFCK-PLDRA-LIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLD-GK-LKWRPLVLPDRYIDHGAPAD 646 (677)
T ss_pred CEEEEEcCcCC-CCCHH-HHHHHhhhCCEEEEECCCCCCcHHHHHHHHHHhcCCcc-CC-ceeEEecCCCcccCcCCHHH
Confidence 35667765322 22322 3344554445555554433 23 56888888876431 11 24578999999999999999
Q ss_pred HHHhh
Q 016852 340 LADKI 344 (381)
Q Consensus 340 L~~~l 344 (381)
+.+..
T Consensus 647 L~~~~ 651 (677)
T PLN02582 647 QLAEA 651 (677)
T ss_pred HHHHh
Confidence 88863
No 174
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.55 E-value=1.4e+02 Score=21.85 Aligned_cols=31 Identities=29% Similarity=0.180 Sum_probs=25.4
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEE
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLY 158 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~ 158 (381)
.|.+||.|+.+...+..+..++|.+.++.+.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 5889999997777788899999988776553
No 175
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=20.55 E-value=3.2e+02 Score=25.00 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCcCC-HH------HHHHHHHhCCCcEEEEcCchH
Q 016852 191 EEIHELLLSFAEVGATVVRLKGGDPLVFGR-GG------EEMDFLQQKGIQVKVIPGITA 243 (381)
Q Consensus 191 eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~-~~------~l~~~l~~~gi~veVIPGISS 243 (381)
++..+.|.+.+++.+--.++..||=.-.+. .. .+++.+.+.++++-++||==-
T Consensus 21 ~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 21 DAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 345566766665544446667999665554 22 345556555788888888533
No 176
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=20.53 E-value=1.4e+02 Score=29.50 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=21.3
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEc
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYD 159 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~ 159 (381)
-.++++.|. |..+ ..+++++++|++||+|++.
T Consensus 159 I~~v~~~~~-~~~~-~~~p~~l~AI~~AD~Iiig 190 (300)
T PF01933_consen 159 IRRVFLEGA-PEEA-KANPEALEAIEEADLIIIG 190 (300)
T ss_dssp EEEEEEECT-STT---B-HHHHHHHHH-SEEEE-
T ss_pred ccEEEEecC-cccc-CCCHHHHHHHHhCCEEEEc
Confidence 357777777 4333 4789999999999988864
No 177
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=20.47 E-value=5.3e+02 Score=28.94 Aligned_cols=29 Identities=10% Similarity=-0.048 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEe-cCCCCCc
Q 016852 189 TQEEIHELLLSFAEVGATVVRLK-GGDPLVF 218 (381)
Q Consensus 189 ~~eei~~~i~~~~~~Gk~VvvL~-sGDP~~y 218 (381)
+.+++.+.+.+.++.| ++++++ +++-.+.
T Consensus 418 ~~e~a~~~l~~~~~~g-DvVLlKGSr~~~le 447 (822)
T PRK11930 418 TTEAFLKSFAFLKFRN-ELILVKGARKFEFE 447 (822)
T ss_pred CHHHHHHHHHHhcCCC-CEEEEEcCCCCCHH
Confidence 5677888888888776 677666 7774443
No 178
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.44 E-value=3.8e+02 Score=26.65 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCeE-EEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhc
Q 016852 192 EIHELLLSFAEVGATV-VRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAEL 251 (381)
Q Consensus 192 ei~~~i~~~~~~Gk~V-vvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~l 251 (381)
.+.+.|....+.||++ |+++-+-|..- |....+.|++.|+++.+|+ -|++.++..+.
T Consensus 131 ~v~~~l~~A~~~~k~~~V~VtESRP~~e--G~~~ak~L~~~gI~~~~I~-Dsa~~~~~~~v 188 (301)
T COG1184 131 TVLEVLKTAADRGKRFKVIVTESRPRGE--GRIMAKELRQSGIPVTVIV-DSAVGAFMSRV 188 (301)
T ss_pred HHHHHHHHhhhcCCceEEEEEcCCCcch--HHHHHHHHHHcCCceEEEe-chHHHHHHHhC
Confidence 4556777777777764 66679999988 5677889999999999999 47777776653
No 179
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=20.35 E-value=1e+03 Score=27.12 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=52.6
Q ss_pred ccccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHH-HHH-HhcCEEEEcCCC----C-HHHH
Q 016852 95 DIALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAM-KVI-QKADLLLYDRLV----S-NDVL 167 (381)
Q Consensus 95 ~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~-~aL-~~ADvVi~~~~~----~-~~ll 167 (381)
|-+.+...++..|+.++..... .....+.++|+|+ +.+.-...-. ++. +.+|.|+..... . +.+.
T Consensus 360 DyahnP~s~~a~l~~l~~~~~~-------~~~r~i~V~g~g~-~r~~~~~~~~~~~~~~~~d~vi~t~~~pr~e~p~~i~ 431 (958)
T PRK11929 360 DYAHTPDALAKALTALRPVAQA-------RNGRLVCVFGCGG-DRDKGKRPEMGRIAAELADRVVVTSDNPRSEAPEAII 431 (958)
T ss_pred ECCCCHHHHHHHHHHHHHhccc-------CCCcEEEEECCCC-CCCcchhHHHHHHHHHhCCEEEEcCCCCCCCCHHHHH
Confidence 4556666699999987531100 0124688889884 4433222222 332 357987752211 1 2344
Q ss_pred hhhCCC----ceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 016852 168 DLVAPN----ARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLV 217 (381)
Q Consensus 168 ~~l~~~----~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ 217 (381)
+.+... ..+..+ .+.++.++.+.+.++.|..|++.-+|+=.+
T Consensus 432 ~~i~~~~~~~~~~~~~--------~d~~~Ai~~a~~~a~~gD~VLv~GsG~e~~ 477 (958)
T PRK11929 432 DQILAGIPAGARVFVI--------SDRAEAIRQAIWMAAPGDVILIAGKGHETY 477 (958)
T ss_pred HHHHhhccCCCceEEE--------CCHHHHHHHHHHhcCCCCEEEEeecCcchh
Confidence 433211 112211 135566667766666664344444777543
No 180
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=20.26 E-value=1.1e+02 Score=22.65 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=24.0
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcCEEE
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLL 157 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi 157 (381)
..|.+||-|+..++ +..+..++|.+.++=+
T Consensus 3 a~VsvVG~gm~~~g-v~~ki~~~L~~~~I~v 32 (66)
T cd04915 3 AIVSVIGRDLSTPG-VLARGLAALAEAGIEP 32 (66)
T ss_pred EEEEEECCCCCcch-HHHHHHHHHHHCCCCE
Confidence 57899999997554 8889999998876544
No 181
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=20.15 E-value=1.6e+02 Score=24.64 Aligned_cols=47 Identities=30% Similarity=0.463 Sum_probs=34.5
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCCC----cEEEEcCchHHHHHHHhcCCCCc
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKGI----QVKVIPGITAASGIAAELGIPLT 256 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~gi----~veVIPGISS~~aaaA~lGipl~ 256 (381)
.+++++..|| |+..+++..+.+.+. .+-++|+ .+.+.++-.+|++..
T Consensus 55 ~~~ivv~GGD----GTl~~vv~~l~~~~~~~~~~l~iiP~-GT~N~~ar~lg~~~~ 105 (130)
T PF00781_consen 55 PDVIVVVGGD----GTLNEVVNGLMGSDREDKPPLGIIPA-GTGNDFARSLGIPSD 105 (130)
T ss_dssp -SEEEEEESH----HHHHHHHHHHCTSTSSS--EEEEEE--SSS-HHHHHTT--SS
T ss_pred ccEEEEEcCc----cHHHHHHHHHhhcCCCccceEEEecC-CChhHHHHHcCCCCC
Confidence 3789999999 778888888877765 8999996 566777788888865
No 182
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=20.13 E-value=7.7e+02 Score=23.82 Aligned_cols=150 Identities=22% Similarity=0.269 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHHcCCe--EEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCccccee
Q 016852 187 SRTQEEIHELLLSFAEVGAT--VVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSV 264 (381)
Q Consensus 187 ~~~~eei~~~i~~~~~~Gk~--VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v 264 (381)
..+.++.++.+...+.+++. |+.+-.=.-...-.-.+..+.+.++ +.-+.-|++-+-++--.+|-|..++
T Consensus 19 ~~~~~~~~~~i~~~~~~~~~~~vv~~N~e~~~~a~~d~e~~~~i~~A--~li~pDG~gvV~~ar~~~g~~~~~r------ 90 (253)
T COG1922 19 NVTWDEAVALILGRIEQGKPTTVVTLNAEKVLLARKDPEFREILNQA--DLILPDGIGVVRAARRLLGQPLPER------ 90 (253)
T ss_pred cCCHHHHHHHHHHHHhcCCccEEEEcCHHHHHHhccCHHHHHHHhhc--CEEccCchhHHHHHHHHhCccCccc------
Confidence 34677777888888777765 4444333322222222334455544 6777777777666668888887531
Q ss_pred EEecCCCCCCCCChHH-HHHHhcCCCCcEEEEcCCC-CHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHH
Q 016852 265 RFLTGHSRKGGTDPLF-VAENAADPDSTLVVYMGLS-TLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLAD 342 (381)
Q Consensus 265 ~ivs~hgr~~~~~~~~-l~~~l~~~~~tlVIl~~~~-~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~ 342 (381)
++ | .+-.. +.+.....+.++-++.+.. -..+.++.|... ++. . .+++.+=||-+..- -+.+.+
T Consensus 91 --v~--G----~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~-~p~-l-~ivg~h~GYf~~~e----~~~i~~ 155 (253)
T COG1922 91 --VA--G----TDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAK-YPG-L-KIVGSHDGYFDPEE----EEAIVE 155 (253)
T ss_pred --CC--h----HHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHH-CCC-c-eEEEecCCCCChhh----HHHHHH
Confidence 11 1 11111 3344444445655554443 355666666654 442 2 23333334332110 024444
Q ss_pred hhccCCCCCcEEEEEcCccc
Q 016852 343 KIGVEELVSPTLIIIGKVVS 362 (381)
Q Consensus 343 ~l~~~~~~~~~viiIg~~~~ 362 (381)
.+.. ..|.+++||-.+.
T Consensus 156 ~I~~---s~pdil~VgmG~P 172 (253)
T COG1922 156 RIAA---SGPDILLVGMGVP 172 (253)
T ss_pred HHHh---cCCCEEEEeCCCc
Confidence 4322 3566777776554
No 183
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=20.13 E-value=2.7e+02 Score=24.48 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=57.2
Q ss_pred HHHHHHHcCCeEEEEe-cCCCCCcCCHHHHHHHHHhCCCcEEE-EcCchHHHHHHHhcCCCCccCcccceeEEecCCCCC
Q 016852 196 LLLSFAEVGATVVRLK-GGDPLVFGRGGEEMDFLQQKGIQVKV-IPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRK 273 (381)
Q Consensus 196 ~i~~~~~~Gk~VvvL~-sGDP~~ys~~~~l~~~l~~~gi~veV-IPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~ 273 (381)
.|.+.++..|+||++- |.+|.=. +..+.++|.+.|++|-- -|+... --.+|..-.. +
T Consensus 8 ~i~~iL~~~K~IAvVG~S~~P~r~--sy~V~kyL~~~GY~ViPVNP~~~~----~eiLG~k~y~-----s---------- 66 (140)
T COG1832 8 DIAEILKSAKTIAVVGASDKPDRP--SYRVAKYLQQKGYRVIPVNPKLAG----EEILGEKVYP-----S---------- 66 (140)
T ss_pred HHHHHHHhCceEEEEecCCCCCcc--HHHHHHHHHHCCCEEEeeCcccch----HHhcCchhhh-----c----------
Confidence 4455566789999985 8999655 45678899999754432 233221 1223332221 0
Q ss_pred CCCChHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcE
Q 016852 274 GGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQR 331 (381)
Q Consensus 274 ~~~~~~~l~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dEr 331 (381)
+..+-..=..+-+|-.+..+.++++..++.| . ++ +.-++|..+|.
T Consensus 67 --------L~dIpe~IDiVdvFR~~e~~~~i~~eal~~~--~--kv-~W~QlGi~n~e 111 (140)
T COG1832 67 --------LADIPEPIDIVDVFRRSEAAPEVAREALEKG--A--KV-VWLQLGIRNEE 111 (140)
T ss_pred --------HHhCCCCCcEEEEecChhhhHHHHHHHHhhC--C--Ce-EEEecCcCCHH
Confidence 1112222345566767777778888888775 1 12 23357766653
No 184
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=20.08 E-value=6.3e+02 Score=22.56 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=35.2
Q ss_pred cccccccccccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEE-EcC
Q 016852 88 ADSTRRNDIALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLL-YDR 160 (381)
Q Consensus 88 ~~~~~~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi-~~~ 160 (381)
...++..+..++.+|++.+.-. +.. -.....+.-+|+|.| .++..+.+.+....-|+ .+.
T Consensus 13 ~~~~~~~~~~~t~~~~r~~~l~---~l~-------~~~~~~vlDlG~GtG---~~s~~~a~~~~~~~~v~avD~ 73 (198)
T PRK00377 13 EEFERDEEIPMTKEEIRALALS---KLR-------LRKGDMILDIGCGTG---SVTVEASLLVGETGKVYAVDK 73 (198)
T ss_pred HHHccCCCCCCCHHHHHHHHHH---HcC-------CCCcCEEEEeCCcCC---HHHHHHHHHhCCCCEEEEEEC
Confidence 3445534566888888665433 111 112357888888885 67777777775444444 453
No 185
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=20.06 E-value=43 Score=30.98 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=26.3
Q ss_pred CCCCCcccccccccccccccCHHH-HHHHHHHHHHhhh
Q 016852 79 PTSPSVSLDADSTRRNDIALQLPE-LKKLLQVLREKRE 115 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~e-l~~~l~~~~~~~~ 115 (381)
||.|+.|..+..+| +++...+++ ...+++.+...|.
T Consensus 124 sT~G~sP~la~~lr-~~ie~~l~~~~~~~~~~~~~~R~ 160 (205)
T TIGR01470 124 SSGGAAPVLARLLR-ERIETLLPPSLGDLATLAATWRD 160 (205)
T ss_pred ECCCCCcHHHHHHH-HHHHHhcchhHHHHHHHHHHHHH
Confidence 89999999999999 777666764 6665555544443
Done!