Query 016852
Match_columns 381
No_of_seqs 193 out of 1411
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:51:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s4d_A Uroporphyrin-III C-meth 100.0 3.9E-44 1.3E-48 345.1 25.4 243 123-365 11-253 (280)
2 2ybo_A Methyltransferase; SUMT 100.0 2.1E-43 7.1E-48 342.4 27.5 241 123-364 21-261 (294)
3 4e16_A Precorrin-4 C(11)-methy 100.0 1E-42 3.5E-47 330.5 27.8 232 125-363 3-235 (253)
4 1pjq_A CYSG, siroheme synthase 100.0 5E-43 1.7E-47 358.6 26.6 237 124-365 213-449 (457)
5 3ndc_A Precorrin-4 C(11)-methy 100.0 7.9E-42 2.7E-46 326.5 25.8 229 127-363 4-233 (264)
6 1ve2_A Uroporphyrin-III C-meth 100.0 6.4E-42 2.2E-46 321.0 24.7 225 125-364 1-225 (235)
7 1cbf_A Cobalt-precorrin-4 tran 100.0 1.8E-40 6E-45 320.2 29.5 234 123-363 17-251 (285)
8 1va0_A Uroporphyrin-III C-meth 100.0 1.8E-40 6.3E-45 311.8 26.3 229 127-368 1-229 (239)
9 2e0n_A Precorrin-2 C20-methylt 100.0 8.7E-38 3E-42 297.1 21.8 232 126-374 4-249 (259)
10 3kwp_A Predicted methyltransfe 100.0 1.6E-37 5.4E-42 301.4 21.4 224 125-362 14-239 (296)
11 3nut_A Precorrin-3 methylase; 100.0 2.6E-37 9E-42 292.9 19.5 217 124-362 6-236 (251)
12 3i4t_A Diphthine synthase; nia 100.0 8.7E-38 3E-42 302.5 14.6 227 124-362 18-277 (292)
13 1wyz_A Putative S-adenosylmeth 100.0 1.8E-37 6.3E-42 292.6 16.2 225 126-361 2-236 (242)
14 2qbu_A Precorrin-2 methyltrans 100.0 4.8E-36 1.6E-40 279.7 19.9 215 125-360 1-229 (232)
15 2z6r_A Diphthine synthase; met 100.0 5.7E-36 2E-40 285.4 18.3 223 128-363 2-245 (265)
16 2zvb_A Precorrin-3 C17-methylt 100.0 9.6E-35 3.3E-39 281.7 22.6 221 126-362 1-248 (295)
17 1wde_A Probable diphthine synt 100.0 3.2E-35 1.1E-39 284.8 15.4 220 127-361 8-254 (294)
18 1vhv_A Diphthine synthase; str 100.0 2E-33 6.7E-38 268.7 21.5 221 125-362 11-242 (268)
19 3nd1_A Precorrin-6A synthase/C 100.0 1E-33 3.4E-38 272.0 14.9 206 123-345 18-249 (275)
20 2npn_A Putative cobalamin synt 100.0 1.8E-32 6.1E-37 259.4 16.0 201 126-345 2-228 (251)
21 2bb3_A Cobalamin biosynthesis 100.0 1.3E-31 4.5E-36 249.4 13.4 195 124-360 19-216 (221)
22 3hh1_A Tetrapyrrole methylase 99.9 1.5E-22 5.3E-27 170.2 12.6 111 125-241 4-117 (117)
23 3ffy_A Putative tetrapyrrole ( 99.5 1.6E-13 5.5E-18 114.9 13.3 113 239-360 1-113 (115)
24 3mvn_A UDP-N-acetylmuramate:L- 88.2 3.6 0.00012 35.1 10.3 113 94-228 41-161 (163)
25 2d59_A Hypothetical protein PH 73.9 37 0.0012 28.1 12.2 108 97-234 9-126 (144)
26 2duw_A Putative COA-binding pr 53.5 40 0.0014 27.9 7.3 28 126-154 13-40 (145)
27 1iuk_A Hypothetical protein TT 51.5 99 0.0034 25.3 9.6 98 126-236 13-121 (140)
28 3hn7_A UDP-N-acetylmuramate-L- 49.7 88 0.003 31.5 10.6 115 95-230 392-519 (524)
29 2pju_A Propionate catabolism o 46.2 71 0.0024 28.7 8.3 99 96-215 17-117 (225)
30 2q5c_A NTRC family transcripti 44.9 95 0.0033 27.0 8.8 95 99-216 12-106 (196)
31 3nav_A Tryptophan synthase alp 43.3 1.3E+02 0.0046 27.7 9.9 113 136-254 28-152 (271)
32 3lqk_A Dipicolinate synthase s 40.6 24 0.00081 31.4 4.0 39 203-241 6-44 (201)
33 1x87_A Urocanase protein; stru 40.4 90 0.0031 31.7 8.5 116 103-243 145-261 (551)
34 2o8r_A Polyphosphate kinase; s 40.2 80 0.0027 33.5 8.6 93 146-241 336-433 (705)
35 3mcu_A Dipicolinate synthase, 39.9 28 0.00097 31.1 4.5 42 203-244 4-45 (207)
36 2fkn_A Urocanate hydratase; ro 38.1 90 0.0031 31.8 8.1 116 103-243 146-262 (552)
37 2ab1_A Hypothetical protein; H 37.9 38 0.0013 27.7 4.6 46 95-157 46-92 (122)
38 1tv8_A MOAA, molybdenum cofact 36.2 71 0.0024 29.8 6.9 53 188-240 50-104 (340)
39 2dc1_A L-aspartate dehydrogena 36.0 94 0.0032 27.4 7.4 53 191-243 61-113 (236)
40 1byr_A Protein (endonuclease); 35.4 91 0.0031 25.1 6.7 49 191-239 40-88 (155)
41 1uwk_A Urocanate hydratase; hy 34.2 87 0.003 31.9 7.3 116 103-243 150-266 (557)
42 2ab1_A Hypothetical protein; H 34.1 79 0.0027 25.7 6.0 41 201-241 58-98 (122)
43 3sho_A Transcriptional regulat 34.1 1.8E+02 0.0063 24.1 8.7 53 195-249 30-83 (187)
44 3lzd_A DPH2; diphthamide biosy 33.8 2.7E+02 0.0091 27.1 10.7 124 95-240 57-186 (378)
45 4hv4_A UDP-N-acetylmuramate--L 33.3 69 0.0023 32.0 6.6 113 95-229 354-483 (494)
46 2gm2_A Conserved hypothetical 33.1 23 0.0008 29.3 2.6 44 97-157 51-94 (132)
47 1w5q_A Delta-aminolevulinic ac 32.5 1.3E+02 0.0045 28.8 7.9 174 47-238 4-200 (337)
48 1gmx_A GLPE protein; transfera 32.4 1.5E+02 0.0052 22.3 7.3 85 140-240 5-91 (108)
49 3iix_A Biotin synthetase, puta 32.4 67 0.0023 29.9 6.1 67 188-254 84-154 (348)
50 2fpr_A Histidine biosynthesis 31.9 81 0.0028 26.3 6.0 26 191-216 45-70 (176)
51 3dfz_A SIRC, precorrin-2 dehyd 31.3 6.9 0.00024 35.5 -1.1 37 79-116 145-182 (223)
52 1p3y_1 MRSD protein; flavoprot 29.7 41 0.0014 29.7 3.7 40 203-243 7-46 (194)
53 3c8f_A Pyruvate formate-lyase 29.2 52 0.0018 28.5 4.4 52 189-240 51-107 (245)
54 3s1t_A Aspartokinase; ACT doma 29.1 41 0.0014 29.1 3.6 31 125-155 95-125 (181)
55 2o2z_A Hypothetical protein; s 28.9 3.7E+02 0.013 25.5 10.6 85 127-215 157-257 (323)
56 2fsx_A RV0390, COG0607: rhodan 28.4 1.8E+02 0.0062 23.4 7.4 93 141-240 6-113 (148)
57 2fvt_A Conserved hypothetical 27.6 29 0.00099 28.9 2.2 85 52-157 9-97 (135)
58 4go7_X Aspartokinase; transfer 27.6 36 0.0012 30.2 3.0 31 125-155 114-144 (200)
59 1g63_A Epidermin modifying enz 27.2 56 0.0019 28.4 4.1 37 205-242 3-39 (181)
60 1h7n_A 5-aminolaevulinic acid 27.1 2.7E+02 0.0093 26.7 9.1 122 98-239 66-206 (342)
61 2gx8_A NIF3-related protein; s 26.8 1.8E+02 0.006 28.6 8.1 109 103-218 281-396 (397)
62 2qip_A Protein of unknown func 26.5 49 0.0017 27.9 3.6 33 203-239 107-140 (165)
63 2q9u_A A-type flavoprotein; fl 26.3 4.1E+02 0.014 25.0 10.7 124 103-234 239-371 (414)
64 3bc8_A O-phosphoseryl-tRNA(SEC 26.2 2.4E+02 0.0081 28.0 9.0 109 127-238 117-234 (450)
65 3qjg_A Epidermin biosynthesis 25.8 66 0.0023 27.8 4.3 39 204-243 5-43 (175)
66 1ccw_A Protein (glutamate muta 25.8 2.6E+02 0.0089 22.5 8.8 114 130-246 6-126 (137)
67 2yx0_A Radical SAM enzyme; pre 25.3 1.3E+02 0.0046 28.0 6.8 35 208-242 145-180 (342)
68 2dt9_A Aspartokinase; protein- 25.0 48 0.0017 27.9 3.3 34 124-157 93-126 (167)
69 3gdw_A Sigma-54 interaction do 24.5 96 0.0033 25.6 4.9 54 189-247 43-102 (139)
70 2fyw_A Conserved hypothetical 24.2 2.4E+02 0.0081 25.7 8.1 65 151-217 197-265 (267)
71 3gx1_A LIN1832 protein; APC633 23.5 1.1E+02 0.0037 24.9 5.1 55 189-248 43-101 (130)
72 1xdp_A Polyphosphate kinase; P 23.3 95 0.0033 32.8 5.7 88 146-236 331-425 (687)
73 3ff4_A Uncharacterized protein 23.2 1.5E+02 0.005 23.9 5.7 97 126-239 4-110 (122)
74 2nyd_A UPF0135 protein SA1388; 22.4 3.9E+02 0.013 25.8 9.5 110 103-218 254-369 (370)
75 1tq1_A AT5G66040, senescence-a 22.0 77 0.0026 25.2 3.8 109 140-256 18-128 (129)
76 2a5h_A L-lysine 2,3-aminomutas 21.6 1.5E+02 0.0052 28.8 6.5 50 188-237 145-199 (416)
77 2z2u_A UPF0026 protein MJ0257; 20.6 1.7E+02 0.0058 26.6 6.4 45 208-253 131-176 (311)
78 3s40_A Diacylglycerol kinase; 20.3 68 0.0023 29.7 3.5 49 203-256 62-112 (304)
79 1p9o_A Phosphopantothenoylcyst 20.3 1.2E+02 0.0041 28.8 5.2 43 202-244 34-91 (313)
80 2jwk_A Protein TOLR; periplasm 20.3 80 0.0027 22.3 3.2 45 189-233 28-73 (74)
No 1
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=100.00 E-value=3.9e-44 Score=345.09 Aligned_cols=243 Identities=38% Similarity=0.647 Sum_probs=212.4
Q ss_pred CCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHH
Q 016852 123 KCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAE 202 (381)
Q Consensus 123 ~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~ 202 (381)
.+.+|+||+||+||||+++||++|+++|++||+|+++.++.+.++++++.+++++++++....+...++++.+.|.++++
T Consensus 11 ~~~~g~l~lVG~GpGd~~lLTl~A~~~L~~ADvV~~d~~~~~~ll~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~ 90 (280)
T 1s4d_A 11 ALEKGSVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGGKPSPKQRDISLRLVELAR 90 (280)
T ss_dssp CCCSSCEEEEECBSSCTTSSBHHHHHHHHHCSEEEECSCSCTTGGGGSSTTCCEEECSCCC--CCCCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEecCCCCHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHhccCCCEEEeccccccccccCHHHHHHHHHHHHh
Confidence 44569999999999999999999999999999999999888888898887888888887777788899999999999999
Q ss_pred cCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHH
Q 016852 203 VGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVA 282 (381)
Q Consensus 203 ~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~ 282 (381)
+|++||+|++|||+||+++.++++.+.+.|++++|||||||+++++|++|+||++++...++.|+++|++.........+
T Consensus 91 ~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (280)
T 1s4d_A 91 AGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFLTGHDSSGLVPDRINW 170 (280)
T ss_dssp TTCCEEEEESBCTTSSSSHHHHHHHHHTTTCCEEEECCCCTTTHHHHHTTCCSCCTTTCSEEEEEECCC-------CCCH
T ss_pred CCCeEEEEcCCCCccccCHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCccCCCcccEEEEECCcCCcccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999888889999999875310000013
Q ss_pred HHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccc
Q 016852 283 ENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVS 362 (381)
Q Consensus 283 ~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~ 362 (381)
+.+.....|+|||+..+++.++++.|++.|+++++++++++++|+++|+++.++++++.+.+.+.+++.|++||||+.+.
T Consensus 171 ~~l~~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~~vivig~~~~ 250 (280)
T 1s4d_A 171 QGIASGSPVIVMYMAMKHIGAITANLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVR 250 (280)
T ss_dssp HHHHTTCSEEEEESCSTTHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEETTTHHHHHHHHTCCSSEEEEESGGGG
T ss_pred HHHhCCCCeEEEECchhhHHHHHHHHHhcCCCCCCEEEEEEeCCCCCeEEEEecHHHHHHHHHhcCCCCCEEEEECchhc
Confidence 34555678999999999999999999999999899999999999999999999999998876555688999999999987
Q ss_pred cCC
Q 016852 363 LSP 365 (381)
Q Consensus 363 ~~~ 365 (381)
.+.
T Consensus 251 ~~~ 253 (280)
T 1s4d_A 251 LRA 253 (280)
T ss_dssp GHH
T ss_pred hhh
Confidence 643
No 2
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=100.00 E-value=2.1e-43 Score=342.38 Aligned_cols=241 Identities=45% Similarity=0.753 Sum_probs=210.3
Q ss_pred CCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHH
Q 016852 123 KCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAE 202 (381)
Q Consensus 123 ~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~ 202 (381)
.+.+|+||+||+||||+++||++|+++|++||+|++++++.+.+++++++++++++.++....+...++++.+.|.+.++
T Consensus 21 ~~~~g~l~lVG~GpGdp~lLTlrA~~~L~~ADvV~~d~~~~~~il~~~~~~~~~i~~~k~~~~~~~~~~~i~~~l~~~~~ 100 (294)
T 2ybo_A 21 DFPAGSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLAR 100 (294)
T ss_dssp CCCTTCEEEEEEESSCGGGSCHHHHHHHTTCSEEEECTTSCHHHHHHSCTTSEEEECC--------CHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHHHcCCEEEEcCCCCHHHHHhcccCCeEEecccccccccCCHHHHHHHHHHHHH
Confidence 45579999999999999999999999999999999999988889999988888888777666777789999999999999
Q ss_pred cCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHH
Q 016852 203 VGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVA 282 (381)
Q Consensus 203 ~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~ 282 (381)
+|++||+|++|||+||+++.++++.+.+.|++++|||||||+++++|++|+||++++.+.++.|+++|++...... ..+
T Consensus 101 ~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~vevIPGiSS~~aa~a~~Giplt~~~~~~~~~~~sg~~~~~~~~~-~~~ 179 (294)
T 2ybo_A 101 QQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLD-LDW 179 (294)
T ss_dssp TTCCEEEEEEBCTTSSSSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCSCBTTTBSCEEEEECSCCTTSSCC-CCH
T ss_pred CCCeEEEEcCCCCCccCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHcCCCcccCCCCcEEEEEcccCCcccchh-hHH
Confidence 9999999999999999999999999999999999999999999999999999999998888999999987542001 113
Q ss_pred HHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccc
Q 016852 283 ENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVS 362 (381)
Q Consensus 283 ~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~ 362 (381)
+.+.....|+|||++.+++.++++.|++.|+++++++++++++|+++|+++.++++++.+.+...+++.+++||||+.+.
T Consensus 180 ~~l~~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~~vivIg~~~~ 259 (294)
T 2ybo_A 180 AGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVA 259 (294)
T ss_dssp HHHTSSSCEEEEESCGGGHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHHHHTTCCSSEEEEESTHHH
T ss_pred HHHhcCCCeEEEECcHHHHHHHHHHHHhcCCCCCCEEEEEEeCCCCceEEEEeeHHHHHHHHHhcCCCCCEEEEECchhh
Confidence 45666788999999999999999999999999899999999999999999999999998876556789999999999887
Q ss_pred cC
Q 016852 363 LS 364 (381)
Q Consensus 363 ~~ 364 (381)
.+
T Consensus 260 ~~ 261 (294)
T 2ybo_A 260 LF 261 (294)
T ss_dssp HT
T ss_pred hc
Confidence 65
No 3
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=100.00 E-value=1e-42 Score=330.54 Aligned_cols=232 Identities=26% Similarity=0.446 Sum_probs=202.3
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCEEEE-cCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHc
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEV 203 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~-~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~ 203 (381)
++|+||+||+||||+++||++|+++|++||+|++ ++++...+++.++++++++.. +...++++.+.|.+++++
T Consensus 3 ~~g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~ 76 (253)
T 4e16_A 3 AMNKVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQIHNS------AHMDLQEIIDVMREGIEN 76 (253)
T ss_dssp -CCCEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCGGGGGGSCTTCEEEEG------GGCCHHHHHHHHHHHHHT
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhcCCCCEEEec------CCCCHHHHHHHHHHHHHC
Confidence 4799999999999999999999999999999999 667777778888777776542 234688999999999999
Q ss_pred CCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHH
Q 016852 204 GATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAE 283 (381)
Q Consensus 204 Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~ 283 (381)
|++||+|++|||+|||++.++++.+.+.|++++|||||||+++++|++|+||++++..+++.+++.||+..... ...++
T Consensus 77 g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~~~~~~~~~g~~~~~~-~~~~~ 155 (253)
T 4e16_A 77 NKSVVRLQTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASSLGVEYTVPEISQSVIITRMEGRTPVPE-KESIQ 155 (253)
T ss_dssp TCCEEEEESBCTTTTCCHHHHHHHHHHHTCCEEEECCCCHHHHHHHHHTCCSCBTTTBSCEEEEEC---CCCCG-GGSHH
T ss_pred CCcEEEEeCCCCccccCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHhCCCcccCCccceEEEEeccCCCCcch-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888898999999864221 12234
Q ss_pred HhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCcccc
Q 016852 284 NAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363 (381)
Q Consensus 284 ~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~~ 363 (381)
.+...+.++|+|++.+++.++++.|++.|+++++++++++++|+++|+|+.++++++.+.+.+..++.|+++|||++++.
T Consensus 156 ~l~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~~vivIg~~~~~ 235 (253)
T 4e16_A 156 SYAKHQTSMVIFLSVQEIEKVVSKLLEGGYPKDTPIAVIYKATWADEKIVKGTLSDIAVKVKENNINKTALIMVGRFLGE 235 (253)
T ss_dssp HHHTTCSEEEEEECSTTHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEETTTHHHHHHHTCCCSCEEEEESGGGGC
T ss_pred HHhcCCCeEEEECcHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCcEEEEEEHHHHHHHHHhCCCCCCEEEEECccccc
Confidence 56667889999999999999999999999998999999999999999999999999998776667899999999999864
No 4
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=100.00 E-value=5e-43 Score=358.62 Aligned_cols=237 Identities=51% Similarity=0.818 Sum_probs=208.3
Q ss_pred CCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHc
Q 016852 124 CGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEV 203 (381)
Q Consensus 124 ~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~ 203 (381)
..+|+||+||+||||+++||++|+++|++||+|++++++.+.++++++.+++++++++....+...++++.+.+.+++++
T Consensus 213 ~~~g~l~lVG~GpGd~~lLTlrA~~~L~~ADvV~~d~~~~~~il~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~~ 292 (457)
T 1pjq_A 213 DHRGEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQK 292 (457)
T ss_dssp CCCCEEEEEECBSSCGGGSBHHHHHHHHHCSEEEECTTSCHHHHTTSCTTSEEEECSCC---CCCTTHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCChHHccHHHHHHHHhCCEEEEeCCCCHHHHhhcccCCEEEeccccccccCCCHHHHHHHHHHHHHC
Confidence 34699999999999999999999999999999999999999999999888888888877677778899999999999999
Q ss_pred CCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHH
Q 016852 204 GATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAE 283 (381)
Q Consensus 204 Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~ 283 (381)
|++||+|++|||+|||++.++++.+.+.|++++|||||||+++++|++|+||++++.++++.|+++|++... .. .+.
T Consensus 293 G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~v~vvPGiSs~~aa~a~~Giplt~~~~~~~~~~vsg~~~~~~-~~--~~~ 369 (457)
T 1pjq_A 293 GKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGG-EL--DWE 369 (457)
T ss_dssp TCEEEEEESBCTTTSSSHHHHHTTTTTTTCCEEEECCCCHHHHHHHHTTCCSCCTTTCSEEEEECC-------CC--CHH
T ss_pred CCcEEEEeCCCCCccCCHHHHHHHHHHCCCCEEEeCCHhHHHHHHHHcCCCccCCCccceEEEEeCCCCCcc-hh--hHH
Confidence 999999999999999999999999999999999999999999999999999999998889999999987531 11 124
Q ss_pred HhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCcccc
Q 016852 284 NAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363 (381)
Q Consensus 284 ~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~~ 363 (381)
.+.....|+||||+.+++.++++.|++.|+++++++++++++|+++|+++.++++++.+... ++++|++||||+.++.
T Consensus 370 ~l~~~~~t~Vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~--~~~~~~viivg~~~~~ 447 (457)
T 1pjq_A 370 NLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQ--QVESPALIIVGRVVAL 447 (457)
T ss_dssp HHHSSSEEEEESSCSSSHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHTT--SCCSSEEEEESGGGGG
T ss_pred HHhcCCCeEEEEcchhhHHHHHHHHHhcCCCCCCEEEEEEECCCCCcEEEEEEHHHHHHHhc--CCCCCEEEEEChhhcc
Confidence 45567789999999999999999999999999999999999999999999999999987642 5789999999999876
Q ss_pred CC
Q 016852 364 SP 365 (381)
Q Consensus 364 ~~ 365 (381)
+.
T Consensus 448 ~~ 449 (457)
T 1pjq_A 448 RD 449 (457)
T ss_dssp GG
T ss_pred cc
Confidence 44
No 5
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=100.00 E-value=7.9e-42 Score=326.54 Aligned_cols=229 Identities=28% Similarity=0.434 Sum_probs=201.7
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcCEEEE-cCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCC
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGA 205 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~-~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk 205 (381)
++||+||+||||+++||++|+++|++||+|+| ++++.+.+++.++++++++..+ ...++++.+.|.+++++|+
T Consensus 4 m~l~iVG~GpG~~~lLT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~G~ 77 (264)
T 3ndc_A 4 MTVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTA------PMSLDAIIDTIAEAHAAGQ 77 (264)
T ss_dssp CCEEEEECBSSCGGGSBHHHHHHHHHCSEEEECSTTSCGGGGGGSCTTCEEEECT------TSCHHHHHHHHHHHHHHTC
T ss_pred cEEEEEEcCCCChHHHHHHHHHHHHcCCEEEEECCCCCHHHHhhcCCCCEEEecC------CCCHHHHHHHHHHHHHCCC
Confidence 68999999999999999999999999999999 6777777888888778876542 3568899999999999999
Q ss_pred eEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHHh
Q 016852 206 TVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENA 285 (381)
Q Consensus 206 ~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~l 285 (381)
+||+|++|||+||+++.++++.+.+.|++++|||||||+++++|++|+||+++++.+++.+++.|++.........+..+
T Consensus 78 ~Va~L~~GDP~iyg~~~~l~~~l~~~gi~veviPGiSs~~aaaA~lG~plt~~~~~~~~~~~s~~~~~~~~~~~~~l~~l 157 (264)
T 3ndc_A 78 DVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTRTSGRASAMPAGETLENF 157 (264)
T ss_dssp CEEEEESBCTTSSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHTCCSCBTTTBCCEEEEECCTTTCCCCTTCCHHHH
T ss_pred eEEEEeCCCCccccHHHHHHHHHHhCCCCEEEeCCHHHHHHHHHHhCCCccCCCceeEEEEEeccCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999984311111123455
Q ss_pred cCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCcccc
Q 016852 286 ADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363 (381)
Q Consensus 286 ~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~~ 363 (381)
+..+.++|||++.+++.++++.|++. +++++++++++++|+++|+|+.++++++.+.+ ...++.+++||||+++..
T Consensus 158 ~~~~~tlvl~~~~~~~~~i~~~L~~~-~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~-~~~~~~~~viivg~~~~~ 233 (264)
T 3ndc_A 158 ARTGAVLAIHLSVHVLDEVVQKLVPH-YGEDCPVAIVWRASWPDQRVVRATLATLQTSL-GAELERTALILVGRSLAT 233 (264)
T ss_dssp HTTTCEEEEESCGGGHHHHHHHHHHH-HCTTCEEEEEESTTSTTCEEEEEEGGGSCGGG-SSSSCCCEEEEESGGGSC
T ss_pred hcCCCcEEEecCHHHHHHHHHHHHhh-CCCCCEEEEEEECCCCCeEEEEEEHHHHHHHH-hccCCccEEEEEcCcCCc
Confidence 56778999999999999999999997 67789999999999999999999999999876 567899999999998864
No 6
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=100.00 E-value=6.4e-42 Score=320.98 Aligned_cols=225 Identities=44% Similarity=0.685 Sum_probs=191.0
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcC
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVG 204 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~G 204 (381)
|+|+||+||+||||+++||++|+++|++||+|+++.++.+.+++++ +++++++++....+...++++.+.+.+.+++|
T Consensus 1 M~g~l~vVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 78 (235)
T 1ve2_A 1 MRGKVYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVHPGVLALA--KGELVPVGKEGYGGKTPQEAITARLIALAREG 78 (235)
T ss_dssp CCCEEEEEECBSSSGGGSBHHHHHHHHHCSEEEECTTSCHHHHTTC--CSEEEEC-------CCCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEeeCCCCHHHHHHHHHHHHHhCCEEEEeCCCCHHHHHhh--CcEEEEecccCcccccCHHHHHHHHHHHHHcC
Confidence 3589999999999999999999999999999999998888888876 66777776655566678899999999999999
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHH
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAEN 284 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~ 284 (381)
++||+|++|||+||+++.++++.+.+.|++++|||||||+++++|++|+||++++...++.|+++|+ .. + .
T Consensus 79 ~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~~~s~~~-~~--~------~ 149 (235)
T 1ve2_A 79 RVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALSALGLPLTHRGLARSFAVATGHD-PA--L------P 149 (235)
T ss_dssp CEEEEEESBCTTSSTTHHHHHHHHHHHTCCEEEECCCCTTHHHHHHTTCCSCBTTTBSCEEEEESSC-TT--S------C
T ss_pred CeEEEEcCCCCCcccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHcCCCcccCCcccEEEEeCCCC-ch--h------h
Confidence 9999999999999999999999999889999999999999999999999999988877899999997 32 1 2
Q ss_pred hcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccccC
Q 016852 285 AADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLS 364 (381)
Q Consensus 285 l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~~~ 364 (381)
+. ...++|+|++.+++.++++.|++ |+++++++++++++|+++|+|..++++++.+. ..+++.|++++||+.+..+
T Consensus 150 l~-~~~t~vl~~~~~~~~~i~~~L~~-g~~~~~~v~v~~~l~~~~E~i~~~~l~el~~~--~~~~~~~~vivig~~~~~~ 225 (235)
T 1ve2_A 150 LP-RADTLVLLMPLHTLGGLKERLLE-RFPPETPLALLARVGWPGEAVRLGRVEDLPGL--GEGLPSPALLVVGKVVGLY 225 (235)
T ss_dssp CC-BCSEEEEEC------CHHHHHHT-TSCTTSEEEEEESTTSTTCEEEEEEGGGTTTT--TTTCCSSEEEEESGGGGGH
T ss_pred hc-cCCeEEEEcChhhHHHHHHHHHh-cCCCCCeEEEEEECCcCCeEEEEEEHHHHHHH--hcCCCCCEEEEEChHhhhh
Confidence 33 56899999999999999999999 89888999999999999999999999999764 3367899999999988653
No 7
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=100.00 E-value=1.8e-40 Score=320.17 Aligned_cols=234 Identities=27% Similarity=0.489 Sum_probs=203.8
Q ss_pred CCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEE-cCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHH
Q 016852 123 KCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFA 201 (381)
Q Consensus 123 ~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~-~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~ 201 (381)
+...++||+||+||||+++||++|+++|++||+|++ +++....+++.++++++++.. ...+++++.+.|.+.+
T Consensus 17 ~~~~~~l~lVG~GpGd~~~LT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~------~~~~~~~~~~~i~~~~ 90 (285)
T 1cbf_A 17 RGSHMKLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKT------AGMHLEEMVGTMLDRM 90 (285)
T ss_dssp CSTTSEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCHHHHTTSCTTCEEEEC------TTCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHhcCCCCEEEec------CCCCHHHHHHHHHHHH
Confidence 445679999999999999999999999999999999 666777788887767776643 2346889999999999
Q ss_pred HcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHH
Q 016852 202 EVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFV 281 (381)
Q Consensus 202 ~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l 281 (381)
++|++||+|++|||+||+++.++++.+.+.|++++|||||||+++++|++|+||++++...++.+++.||+.... ....
T Consensus 91 ~~g~~Vv~L~~GDP~i~g~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~pl~~~~~~~~~~~~~~~g~~~~~-~~~~ 169 (285)
T 1cbf_A 91 REGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILTRAEGRTPVP-EFEK 169 (285)
T ss_dssp TTTCCEEEEESBCTTTTCCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHTTCCSCBTTTBCCEEEEECCSSSCCC-GGGC
T ss_pred HCCCeEEEEeCCCccccccHHHHHHHHHHCCCcEEEECCchHHHHHHHHcCCCcccCCcceeEEEeccCCCCCcc-hHHH
Confidence 999999999999999999999999999999999999999999999999999999998888889899999984321 1122
Q ss_pred HHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCcc
Q 016852 282 AENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVV 361 (381)
Q Consensus 282 ~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~ 361 (381)
+..+.....++|||++.+++.++++.|++.|+++++++++++++|+++|+++.++++++.+.....+++.+++++||+.+
T Consensus 170 l~~l~~~~~tlvl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~lg~~~E~i~~~tl~el~~~~~~~~~~~~~viiig~~~ 249 (285)
T 1cbf_A 170 LTDLAKHKCTIALFLSSTLTKKVMKEFINAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMILAGWAL 249 (285)
T ss_dssp HHHHHTTCSEEEEESCTTCHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHHHHTTCCSSEEEEESGGG
T ss_pred HHHHhcCCCeEEEECcHHHHHHHHHHHHhcCCCCCCeEEEEEECCcCCcEEEEecHHHHHHHHHhcCCCCcEEEEEchHh
Confidence 34555667899999999999999999999889888999999999999999999999999876545568999999999988
Q ss_pred cc
Q 016852 362 SL 363 (381)
Q Consensus 362 ~~ 363 (381)
..
T Consensus 250 ~~ 251 (285)
T 1cbf_A 250 DP 251 (285)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 8
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=100.00 E-value=1.8e-40 Score=311.78 Aligned_cols=229 Identities=46% Similarity=0.741 Sum_probs=196.1
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCe
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGAT 206 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~ 206 (381)
|+||+||+||||+++||++|+++|++||+|+++.++.+.++++++ +++++.++.... ...++++.+.|.+++++|++
T Consensus 1 G~l~iVG~GpG~~~~LT~~A~~~L~~advI~~~~~~~~~~l~~~~--~~~i~~~~~~~~-~~~~~~~~~~i~~~~~~g~~ 77 (239)
T 1va0_A 1 GRVYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVDERVLALAP--GEKVYVGKEEGE-SEKQEEIHRLLLRHARAHPF 77 (239)
T ss_dssp CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEECTTSCHHHHTTCC--SEEEECCCCC-----CHHHHHHHHHHHHHTSSE
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCEEEEcCCCCHHHHhhcc--ccEEeccccccc-ccCHHHHHHHHHHHHHCCCc
Confidence 689999999999999999999999999999999888888888876 666666554333 56788999999999999999
Q ss_pred EEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHHhc
Q 016852 207 VVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAA 286 (381)
Q Consensus 207 VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~l~ 286 (381)
||+|++|||+||+++.++++.+.+.|++++|||||||++++ |+||++++...++.|+++|++..... .++.+.
T Consensus 78 V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa----g~pl~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ 150 (239)
T 1va0_A 78 VVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLAS----GLPLTHRGLAHGFAAVSGVLEGGGYP---DLRPFA 150 (239)
T ss_dssp EEEEESBCTTSSSSHHHHHHHHHHTTCCEEEECCCCGGGTT----CCCSSBTTTBSEEEEEESSCGGGCCC---CCTTTT
T ss_pred EEEEeCCCCccccCHHHHHHHHHHCCCcEEEECCcchHhhc----CCCcccCCccceEEEEeccCCccchh---hHHHhc
Confidence 99999999999999999999999999999999999999998 99999988877899999998643111 123455
Q ss_pred CCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccccCCC
Q 016852 287 DPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLSPF 366 (381)
Q Consensus 287 ~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~~~~~ 366 (381)
.. .++|+|++.+++.++++.|++.|+++++++++++++|+++|++..++++++.+. ..+++.|++++||+.++.+..
T Consensus 151 ~~-~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~el~~~--~~~~~~~~vivig~~~~~~~~ 227 (239)
T 1va0_A 151 RV-PTLVVLMGVGRRVWIAKELLRLGRDPREPTLFVERASTPKERRVHARLEEVAEG--KVEVRPPALWILGEVVRVFAE 227 (239)
T ss_dssp TC-SSEEEESCSTTHHHHHHHHHHTTCCTTCEEEEEETTTSTTCEEEEEEHHHHHTT--CCCCCSSEEEEESGGGGGC--
T ss_pred CC-CcEEEEccHHHHHHHHHHHHhcCCCCCCcEEEEEECCCCCcEEEEeEHHHHHhh--hcCCCCCEEEEEchhhccccc
Confidence 55 899999999999999999999999988999999999999999999999999862 346789999999999987655
Q ss_pred Cc
Q 016852 367 WP 368 (381)
Q Consensus 367 ~~ 368 (381)
+.
T Consensus 228 ~~ 229 (239)
T 1va0_A 228 KE 229 (239)
T ss_dssp --
T ss_pred cc
Confidence 43
No 9
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=100.00 E-value=8.7e-38 Score=297.06 Aligned_cols=232 Identities=23% Similarity=0.291 Sum_probs=175.2
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCC------CCHHHHhhh----CCCceEEE----eccccCCCCCCHH
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRL------VSNDVLDLV----APNARLLY----VGKTAGYHSRTQE 191 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~------~~~~ll~~l----~~~~e~i~----~~~~~~~~~~~~e 191 (381)
+|+||+||+||||+++||++|+++|++||+|+++.. ..+.+.+++ +++++++. +++........++
T Consensus 4 ~g~l~iVG~GpG~~~~LT~~A~~~L~~advV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (259)
T 2e0n_A 4 QGSIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDILKEFDLDPSKLRGMLVPMSRSRGAAEASYA 83 (259)
T ss_dssp -CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEEEEEECTTCCEECHHHHHHTTTTCCGGGEEEEEEECC---------CG
T ss_pred CcEEEEEEeCCCChHHHHHHHHHHHHhCCEEEEeccccccccHHHHHHHHHHhcCCCCCEEEeeccCCccchhhhHHHHH
Confidence 689999999999999999999999999999999732 112222334 44555542 2322222233457
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCC
Q 016852 192 EIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHS 271 (381)
Q Consensus 192 ei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hg 271 (381)
++.+.|.+.+++|++||+|++|||+|||++.++++.+.+.|++++|||||||+++++|++|+||++++. .+.++++|.
T Consensus 84 ~~~~~i~~~~~~g~~Va~l~~GDP~~~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~G~pl~~~~~--~~~~~~~~~ 161 (259)
T 2e0n_A 84 ANYASMAEEVQAGRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMTPGIPAFIAAGSAAGMPLALQSD--SVLVLAQID 161 (259)
T ss_dssp GGHHHHHHHHHTTCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEECCCCHHHHHHHHTTCCSBCTTC--CEEEECSCS
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCcccccHHHHHHHHHHCCCCEEEeCChhHHHHHHHhcCCCCcCCCc--eEEEEcCCC
Confidence 788899999999999999999999999999999999999999999999999999999999999987543 355565542
Q ss_pred CCCCCChHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCC
Q 016852 272 RKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVS 351 (381)
Q Consensus 272 r~~~~~~~~l~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~ 351 (381)
. ...+ ..+.....|+|||++.+++.++++.|++.|++ +++++++|+++|+|+. +++++.+. +++.
T Consensus 162 ~-----~~~l-~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~----v~v~~~l~~~~E~i~~-~l~el~~~----~~~~ 226 (259)
T 2e0n_A 162 E-----IGEL-ERALVTHSTVVVMKLSTVRDELVSFLERYAKP----FLYAEKVGMAGEFITM-EVDALRSR----AIPY 226 (259)
T ss_dssp S-----THHH-HHHHTTCSEEEECCTTSSGGGHHHHHHHHCSC----EEEEESTTSTTCEEEC-CTHHHHSC----CCCS
T ss_pred C-----HHHH-HHHhhcCCEEEEEcccccHHHHHHHHHhCCCC----EEEEEECCCCCeEEEc-cHHHHhhC----CCCC
Confidence 1 1222 33344567999999999999999999998753 9999999999999998 99999763 5789
Q ss_pred cEEEEEcCccccCCCCccchhhh
Q 016852 352 PTLIIIGKVVSLSPFWPISSKEA 374 (381)
Q Consensus 352 ~~viiIg~~~~~~~~~~~~~~~~ 374 (381)
++++||++......+.+-|+.-+
T Consensus 227 ~s~iii~~~~~~~~~~~~p~~~~ 249 (259)
T 2e0n_A 227 FSLLVCSPHCRQSTLSPFASKLA 249 (259)
T ss_dssp SEEEEECGGGGGSSCC-------
T ss_pred cEEEEEeccCCccccCccchhHH
Confidence 99999998875554444444433
No 10
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=100.00 E-value=1.6e-37 Score=301.35 Aligned_cols=224 Identities=20% Similarity=0.252 Sum_probs=193.8
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEc-CCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHc
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYD-RLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEV 203 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~-~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~ 203 (381)
++|+||+||+||||+++||++|+++|++||+|+++ .++...+++.++.+++++. ++..++++..+.|.+.+++
T Consensus 14 ~~G~LylVG~GpG~~~~lT~rA~~~L~~aDvI~~edtr~~~~lL~~~~~~~~~i~------~~~~~~~~~~~~li~~l~~ 87 (296)
T 3kwp_A 14 TGGHLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTRNTQKLLNHFEITTKQIS------FHEHNTQERIPQLIAKLKQ 87 (296)
T ss_dssp CCCEEEECCBCSSCGGGCCHHHHHHHHHSSEEEESCHHHHHHHHHHTTCCCEEEE------CSTTTHHHHHHHHHHHHHT
T ss_pred cCceEEEeccCCCCccchhhHHHHHHhHhhhhhhhccccHHHHhhheeeeeeeee------hhhcchhhHhHHHHHHHhc
Confidence 57999999999999999999999999999999994 4777778888877776653 3455678888999999999
Q ss_pred CCeEEEEe-cCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHH
Q 016852 204 GATVVRLK-GGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVA 282 (381)
Q Consensus 204 Gk~VvvL~-sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~ 282 (381)
|++||+|+ +|||+||+++.++++.+.+.|++|++||||||++++++++|+||+. +.|++.|++... .....+
T Consensus 88 G~~Va~lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~aA~a~~Glp~~~------f~f~g~~p~~~~-~r~~~l 160 (296)
T 3kwp_A 88 GMQIAQVSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASGLAPQP------FYFYGFLDRKPK-DRKAEI 160 (296)
T ss_dssp TCEEEEECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHSSCCSS------EEEEEECCSSHH-HHHHHH
T ss_pred CceEEEeccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccchHHHHhccCCCCc------eeEEeeccCCcH-HHHHHH
Confidence 99999997 9999999999999999999999999999999999999999999973 677776765321 112235
Q ss_pred HHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCccc
Q 016852 283 ENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVS 362 (381)
Q Consensus 283 ~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~ 362 (381)
..+...+.|+|||++++++.++++.|.+. +++++++++++++|+++|+++.++++++.+.+.+.+.+.+++|||++...
T Consensus 161 ~~l~~~~~tlV~y~~~~rl~~~l~~L~~~-~g~~~~v~v~~~lt~~~E~i~~gtl~el~~~~~~~~~~ge~vlvv~~~~~ 239 (296)
T 3kwp_A 161 AGLAQRPETLIFYEAPHRLKKTLQNLAAG-FGDERPAVLCRELTKRYEEFLRGSLAELANWAATDTVRGEFVVLVGGNPA 239 (296)
T ss_dssp HTTTTCCSEEEEEECGGGHHHHHHHHHHH-HCTTCEEEEEESTTSTTCEEEEEEHHHHHHHHHHSCCCSCEEEEECCCSS
T ss_pred HHhhcCCceeEeeeCcHHHHHHHHHHHHH-hCCcchhHHHHHHHHHHHHHHhccHHHHHhhhcccccceeEEEEEcCCCC
Confidence 56777788999999999999999999985 66778999999999999999999999999988777789999999998643
No 11
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=100.00 E-value=2.6e-37 Score=292.86 Aligned_cols=217 Identities=24% Similarity=0.295 Sum_probs=168.6
Q ss_pred CCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhh--CCCceEEEeccccCCCCCCHHHHH--HHHHH
Q 016852 124 CGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLV--APNARLLYVGKTAGYHSRTQEEIH--ELLLS 199 (381)
Q Consensus 124 ~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l--~~~~e~i~~~~~~~~~~~~~eei~--~~i~~ 199 (381)
-+.|.+|+||+||||+++||++|+++|++||+|++.++. ++.+ ..+++++.. ..++++. +.+.+
T Consensus 6 ~~~~~~~~vG~GPGd~~lLT~rA~~~L~~AdvI~g~d~~----~~~~~~~~~~~~~~~--------~~~~ei~~~~~li~ 73 (251)
T 3nut_A 6 HMSGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPY----VARIAPREGLTLHPT--------DNRVELDRATHALE 73 (251)
T ss_dssp --CCEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECGGG----GTTCCCCTTCEEEEC--------CSSCCHHHHHHHHH
T ss_pred cccccEEEEEECCCCHHHHHHHHHHHHHhCCEEEEcCcc----cccccccCCCEEeec--------CCHHHHHHHHHHHH
Confidence 457999999999999999999999999999999975542 2333 224454321 1223333 56778
Q ss_pred HHHcCCeEEEEecCCCCCcCCHHHHHHHHHh----CCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCC
Q 016852 200 FAEVGATVVRLKGGDPLVFGRGGEEMDFLQQ----KGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGG 275 (381)
Q Consensus 200 ~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~----~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~ 275 (381)
.+++|++||+|++|||+|||++.++++.+.+ .|++++|||||||+++++|++|+||++ ++.+++.|++...
T Consensus 74 ~~~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~~~~~gi~veviPGiSS~~aa~a~~G~plt~-----~~~~~s~~~~~~~ 148 (251)
T 3nut_A 74 MAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGH-----DFCAINLSDNLKP 148 (251)
T ss_dssp HHHTTCEEEEEESBCTTSSSHHHHHHHHHHHCGGGTTCCEEEECCCCHHHHHHHHHEETTSS-----SEEEEESCCTTSC
T ss_pred HHHCCCeEEEEeCCCcccccCHHHHHHHHHhhcccCCCcEEEECCHHHHHHHHHHhCCCccC-----CeEEEEecCCCCC
Confidence 8889999999999999999999999999997 799999999999999999999999965 3667888876321
Q ss_pred CChH-HHHHHhcCCCCcEEEEcCCC-----CHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCC
Q 016852 276 TDPL-FVAENAADPDSTLVVYMGLS-----TLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEEL 349 (381)
Q Consensus 276 ~~~~-~l~~~l~~~~~tlVIl~~~~-----~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~ 349 (381)
.... ..++.+...+.++|||++.+ ++.++.+.| +.|+++++++++++++|+++|+++.++++++.+. ++
T Consensus 149 ~~~~~~~l~~l~~~~~tlvl~~~~~~~~p~~i~~~~~ll-~~g~~~~~~v~v~~~l~~~~E~i~~~tl~~l~~~----~~ 223 (251)
T 3nut_A 149 FEILEKRLRHAARGDFAMAFYNPRSKSRPHQFTRVLEIL-REECEPGRLILFARAVTTPEQAISVVELRDATPE----MA 223 (251)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCSCSSSTTHHHHHHHHH-HHHSCTTCEEEEEESTTSTTCEEEEEEGGGCCGG----GC
T ss_pred hHHHHHHHHHHhCCCCEEEEECCccccchhHHHHHHHHH-HhCCCCCCEEEEEeeCCCCCcEEEEeEHHHHhhc----CC
Confidence 1111 01222345667999998754 344454444 5568888999999999999999999999999863 67
Q ss_pred CCcEEEEEcCccc
Q 016852 350 VSPTLIIIGKVVS 362 (381)
Q Consensus 350 ~~~~viiIg~~~~ 362 (381)
+.+++||||+.+.
T Consensus 224 ~~~s~iiVg~~~~ 236 (251)
T 3nut_A 224 DMRTVVLVGNAAT 236 (251)
T ss_dssp CTTEEEEECCSSC
T ss_pred CCCEEEEECCccc
Confidence 8999999999875
No 12
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=100.00 E-value=8.7e-38 Score=302.52 Aligned_cols=227 Identities=21% Similarity=0.226 Sum_probs=181.3
Q ss_pred CCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCC-----CCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHH
Q 016852 124 CGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRL-----VSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLL 198 (381)
Q Consensus 124 ~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~-----~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~ 198 (381)
...++||+||+||||+++||++|+++|++||+|+++.. ....+++.+ .+++++..++. .++++.+.+.
T Consensus 18 ~~~~~l~lVG~GpGd~~~LT~rA~~~L~~ADvV~~e~~~s~~~~~~~~L~~~-~~~~~i~~~~~------~~~~~~~~i~ 90 (292)
T 3i4t_A 18 GPGSMLYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAILQCDVAKLEEF-YGKKVIIGDRD------LVETEADQIL 90 (292)
T ss_dssp --CCEEEEEECBSSSGGGSCHHHHHHHHHCSEEEECGGGGGSSSCHHHHHHH-HTSCCEEC-------------CCCTTH
T ss_pred CCCCEEEEEEECCCChHHhhHHHHHHHHhCCEEEEecccccccCCHHHHHhC-CCCeEEEcccc------cHHHHHHHHH
Confidence 34699999999999999999999999999999999876 566777766 35565554422 2456666777
Q ss_pred HHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCCh
Q 016852 199 SFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDP 278 (381)
Q Consensus 199 ~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~ 278 (381)
+.+++ ++||+|++|||+||+++.++++.+.+.|++++|||||||+++ +|++|+||++++.+.++.|++.|+++... .
T Consensus 91 ~~a~~-~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~A-~a~~G~pl~~~~~~~sv~~~t~~~~p~~~-~ 167 (292)
T 3i4t_A 91 EPAKT-KNVALLVVGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMNA-IGCSGLQLYRFGQTVSVCFWSEHWRPSSY-Y 167 (292)
T ss_dssp HHHTT-SEEEEEESBCHHHHCTTHHHHHHHHHHTCCEEEECCCCHHHH-GGGGSCCGGGBCCCEEECCCBTTBCCCTH-H
T ss_pred HHhcC-CCEEEEecCCCCccccHHHHHHHHHHCCCcEEEECCHHHHHH-HHHhCCCcccCCceeEEEEEeCCCCCCcc-H
Confidence 77777 999999999999999999999999999999999999999985 69999999999999999999999886421 1
Q ss_pred HHHHHHhcCCCCcEEE------------------------EcCCCC-HHHHHH---HHHHCCCCCCceeeeEecCCCCCc
Q 016852 279 LFVAENAADPDSTLVV------------------------YMGLST-LPSLAL---KLMHHGLPPHTPAAAIERGTTPQQ 330 (381)
Q Consensus 279 ~~l~~~l~~~~~tlVI------------------------l~~~~~-~~~Ia~---~L~~~G~~~~t~v~v~e~lg~~dE 330 (381)
..++..+....+|+|+ ||++++ +..+.+ .|++.|+++++++++++++|+++|
T Consensus 168 ~~~~~~l~~~~~Tlvl~d~~~~e~~~~~~~~~~~~y~p~r~m~~~~~~~~L~~~~~~l~~~g~~~dtpv~vv~~~t~~~E 247 (292)
T 3i4t_A 168 PKIKINRDNNMHTLVLLDIKVKERSEESIIKGRDIFEPPRYMTINQCIEQLLEVEKEQHLGVYDEDTMVVGMARVACADQ 247 (292)
T ss_dssp HHHHHHHHTTCBEEEEECEECCC-------------CCCEECCHHHHHHHHHHHHHHHCCCSCCTTCEEEEEESTTSTTC
T ss_pred HHHHHHhhcCCCeEEEEeccccccchhhccccccccCCccccCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeecCCCce
Confidence 2245666777889999 555544 333444 455578998999999999999999
Q ss_pred EEEEEehhhHHHhhccCCCCCcEEEEEcCccc
Q 016852 331 RIVFSELKDLADKIGVEELVSPTLIIIGKVVS 362 (381)
Q Consensus 331 rI~~~tL~eL~~~l~~~~~~~~~viiIg~~~~ 362 (381)
+++.+|++++.+. +.+...|++||||+.++
T Consensus 248 ~i~~~tL~~l~~~--~~~~~~~~liivG~~l~ 277 (292)
T 3i4t_A 248 KIVYGKMKDLLHY--DFGAPMHCLLIPAPQVD 277 (292)
T ss_dssp EEEEEEHHHHTTC--CCCSSCEEEEECCSSCC
T ss_pred EEEEEEHHHHHhh--hcCCCCCEEEEECCcCC
Confidence 9999999999873 44567899999998553
No 13
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=100.00 E-value=1.8e-37 Score=292.56 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=171.9
Q ss_pred CCEEEEEecCCCCcc---cchHHHHHHHHhcCEEEE-cCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHH
Q 016852 126 PGNVYLVGTGPGDPD---LLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFA 201 (381)
Q Consensus 126 ~g~l~lVGiGPGd~e---lLTlkA~~aL~~ADvVi~-~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~ 201 (381)
+|+||+||+||||++ +||+||+++|++||+|++ +.+..+.+++.+..+++++++ +....+...+++.++.+.+.+
T Consensus 2 ~G~ly~VG~GpGd~~~~dLlTlrA~~~L~~aDvI~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 80 (242)
T 1wyz_A 2 ETALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSL-TFYPLNKHTSPEDISGYLKPL 80 (242)
T ss_dssp CCSEEEECCCSSSSCHHHHSCTHHHHHHTTCCEEEESCHHHHHHHHHHHCSSSCTTCC-CCEECCSSCCHHHHHHHHHHH
T ss_pred CceEEEEecCCCCCcccCccCHHHHHHHHhCCEEEEeCCcchHHHHHhcCCCCceeee-eeecccccCHHHHHHHHHHHH
Confidence 589999999999998 799999999999999999 445566677777554442211 011233345567778899999
Q ss_pred HcCCeEEEEe-cCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHH
Q 016852 202 EVGATVVRLK-GGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLF 280 (381)
Q Consensus 202 ~~Gk~VvvL~-sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~ 280 (381)
++|++||+|+ +|||++|+++.++++.+++.|++++|||||||+++++|++|+|++ ++.|++.+.+.... ...
T Consensus 81 ~~G~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~vevIPGiSs~~aa~a~~G~p~~------~f~~~g~~p~~~~~-~~~ 153 (242)
T 1wyz_A 81 AGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQ------SFAFHGYLPIEPGE-RAK 153 (242)
T ss_dssp HTTCCEEEECC-------CHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHTSCSS------SEEEEEECCSSTTH-HHH
T ss_pred HcCCEEEEEecCCCCcccCcHHHHHHHHHHCCCCEEEeCcHHHHHHHHHHcCCCCC------eEEEEEEcCCCccc-hHH
Confidence 9999999996 899999999999999999999999999999999999999999977 36666655443211 112
Q ss_pred HHHHhcCC----CCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCC-CCcEEE
Q 016852 281 VAENAADP----DSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEEL-VSPTLI 355 (381)
Q Consensus 281 l~~~l~~~----~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~-~~~~vi 355 (381)
.++.+... ..|+|||+.+.++.++++.|++. +++++++++++++|+++|+++.++++++.+. ..+. +.|+++
T Consensus 154 ~l~~l~~~~~~~~~t~vl~~~~~~~~~~~~~l~~~-~~~~~~v~vv~~~t~~~E~i~~~tl~~l~~~--~~~~~~~P~i~ 230 (242)
T 1wyz_A 154 KLKTLEQRVYAESQTQLFIETPYRNHKMIEDILQN-CRPQTKLCIAANITCEGEFIQTRTVKDWKGH--IPELSKIPCIF 230 (242)
T ss_dssp HHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHH-SCSSSEEEEEESTTSSSCEEEEEEHHHHSSC--CC---CCCEEE
T ss_pred HHHHHhcccccCCCeEEEEEcHHHHHHHHHHHHhc-CCCCCEEEEEEeCCCCCcEEEEeeHHHHHhh--hhccCCCCEEE
Confidence 23444444 78999999999999999999875 7778999999999999999999999999874 2344 789999
Q ss_pred EEcCcc
Q 016852 356 IIGKVV 361 (381)
Q Consensus 356 iIg~~~ 361 (381)
+||+--
T Consensus 231 vig~~~ 236 (242)
T 1wyz_A 231 LLYKLE 236 (242)
T ss_dssp EEEC--
T ss_pred EEeccc
Confidence 999843
No 14
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=4.8e-36 Score=279.74 Aligned_cols=215 Identities=16% Similarity=0.157 Sum_probs=169.8
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCC------HHHH-hhhCC---CceEEEeccccC----CCCCCH
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVS------NDVL-DLVAP---NARLLYVGKTAG----YHSRTQ 190 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~------~~ll-~~l~~---~~e~i~~~~~~~----~~~~~~ 190 (381)
|+|+||+||+||||+++||++|+++|++||+|+++.+.. ..++ ++++. +++++.+..... .....+
T Consensus 1 M~g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (232)
T 2qbu_A 1 MHGKLIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRILDPVFPMTDDRDELESHW 80 (232)
T ss_dssp CCCCEEEEECBSSCGGGSBHHHHHHHHHCSEEECCBCTTCSSCHHHHHHHHHHHHCSSCCEEECCBCCSCSSSTTHHHHH
T ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhCCEEEEeCCCCCccchHHHHHHHHhccccCCcEEEEecCCCCccHHHHHHHH
Confidence 358999999999999999999999999999999976631 2233 34443 566654322211 112246
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCC
Q 016852 191 EEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGH 270 (381)
Q Consensus 191 eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~h 270 (381)
+++.+.|.+.+++|++||+|++|||+|||++.++++.+.+.|+++++||||||+++++|++|+||++++. .+.+ .|
T Consensus 81 ~~~~~~i~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~--~~~~--~~ 156 (232)
T 2qbu_A 81 DSAARMVAAELEDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTLVEGDE--ILLV--VP 156 (232)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCCBCTTC--CEEE--ES
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHHHhCCCCCCCCc--eEEE--Ee
Confidence 7888899999999999999999999999999999999999999999999999999999999999986553 3444 45
Q ss_pred CCCCCCChHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCC
Q 016852 271 SRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELV 350 (381)
Q Consensus 271 gr~~~~~~~~l~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~ 350 (381)
++.. .+ ..+.....++|+|+..+++.++++.|++.|++ +++++++++|+++|+++. +++ .+++
T Consensus 157 ~~~~-----~l-~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~--~~v~v~~~l~~~~E~i~~-~l~--------~~~~ 219 (232)
T 2qbu_A 157 RVDD-----RF-ERVLRDVDACVIMKTSRHGRRAMEVVESDPRG--KDVVSVANCSMDDEVVER-GFA--------SGGG 219 (232)
T ss_dssp SCCH-----HH-HHHGGGCSEEEESSHHHHHHHHHHHHHHSSSC--CEEEEEESTTSTTCEEEE-SCC--------SCCC
T ss_pred CCHH-----HH-HHHhhcCCeEEEEcccCcHHHHHHHHHhcCCC--CcEEEEEECCCCCcEEEc-CCC--------cCCC
Confidence 5432 22 23333457999998888999999999998764 689999999999999987 465 2578
Q ss_pred CcEEEEEcCc
Q 016852 351 SPTLIIIGKV 360 (381)
Q Consensus 351 ~~~viiIg~~ 360 (381)
++++++|++.
T Consensus 220 ~ls~vii~~~ 229 (232)
T 2qbu_A 220 YLATTLVRFR 229 (232)
T ss_dssp SSEEEEEEC-
T ss_pred ccEEEEEecC
Confidence 9999999975
No 15
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=100.00 E-value=5.7e-36 Score=285.41 Aligned_cols=223 Identities=20% Similarity=0.202 Sum_probs=172.4
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCC------CHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHH-HH
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLV------SNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLL-SF 200 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~------~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~-~~ 200 (381)
+||+||+||||+++||++|+++|++||+|+++.+. ...+++.+. +++++..+ ...++++.+.|. +.
T Consensus 2 ~l~iVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~------~~~~~~~~~~i~~~~ 74 (265)
T 2z6r_A 2 VLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQRLI-GKEIRVLS------REDVELNFENIVLPL 74 (265)
T ss_dssp CEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCTTCCHHHHHHHH-TSCCEEEC------HHHHHHHHHHHTHHH
T ss_pred EEEEEccCCCChHhcCHHHHHHHHhCCEEEEeccccccccCCHHHHHhcc-CCcEEEcC------cccHHHHHHHHHHHH
Confidence 69999999999999999999999999999976442 445565542 44544321 124567778887 77
Q ss_pred HHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHH
Q 016852 201 AEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLF 280 (381)
Q Consensus 201 ~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~ 280 (381)
++ |++||+|++|||+|||++.++++.+.+.|++++|||||||++++ |++|+||++++...++.+.+.|+++.. ...
T Consensus 75 ~~-g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSs~~aa-a~~g~pl~~~~~~~~v~~~s~~~~~~~--~~~ 150 (265)
T 2z6r_A 75 AK-ENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAV-GITGLHIYKFGKSATVAYPEGNWFPTS--YYD 150 (265)
T ss_dssp HT-TSCEEEEESBCTTSSSSTHHHHHHHHHTTCCEEEECCCCHHHHG-GGGTCCGGGBCCCEEECCCBTTBCCCH--HHH
T ss_pred hC-CCcEEEEECCCCcCCCCHHHHHHHHHHCCCcEEEECChhHHHHH-HHhCCCccCCCccEEEEEecCCcCCCc--hHH
Confidence 75 79999999999999999999999999999999999999999999 999999998877656656688987532 222
Q ss_pred -HHHHhcCCCCcEEE---------EcCCC-CHHHHHHHHHH---CCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhcc
Q 016852 281 -VAENAADPDSTLVV---------YMGLS-TLPSLALKLMH---HGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGV 346 (381)
Q Consensus 281 -l~~~l~~~~~tlVI---------l~~~~-~~~~Ia~~L~~---~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~ 346 (381)
+...+.....|+|+ ||+.+ ..+++++.+.+ .|+++++++++++++|+++|++..++++++.+. +
T Consensus 151 ~l~~~~~~~~~tlvl~d~~~~~~~y~~~~~~~~~l~~~~~~l~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~--~ 228 (265)
T 2z6r_A 151 VIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIRE--D 228 (265)
T ss_dssp HHHHHHHTTCBEEEEECEEGGGTEECCHHHHHHHHHHHHHHHCCSSSCTTCEEEEEESTTSSSCEEEEEEHHHHTTC--C
T ss_pred HHHHHHhCCCceEEEEecccccccccCHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeCCCCceEEEEeeHHHHhhh--h
Confidence 22333333478888 77765 23355554444 467788999999999999999999999999764 2
Q ss_pred CCCCCcEEEEEcCcccc
Q 016852 347 EELVSPTLIIIGKVVSL 363 (381)
Q Consensus 347 ~~~~~~~viiIg~~~~~ 363 (381)
.....++++|+|+.+..
T Consensus 229 ~~~~~~~lii~g~~~~~ 245 (265)
T 2z6r_A 229 FGDPPHILIVPGKLHIV 245 (265)
T ss_dssp CCSSCEEEEECCSCCHH
T ss_pred cCCCCcEEEEECCCchH
Confidence 23467899999986543
No 16
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A*
Probab=100.00 E-value=9.6e-35 Score=281.73 Aligned_cols=221 Identities=26% Similarity=0.363 Sum_probs=171.2
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhh-CCCceEEEeccccCCCCCCHHHHHHHHHHHHHcC
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLV-APNARLLYVGKTAGYHSRTQEEIHELLLSFAEVG 204 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l-~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~G 204 (381)
||+||+||+||||+++||++|+++|++||+|++.++..+.+.... ..+++++.. ......++.+.+.+.+++|
T Consensus 1 MG~l~lVG~GpGdp~lLT~rA~~~L~~ADvVig~~~~l~ll~~~~~~~~k~~~~~------~~~~e~~~~~~~l~~a~~G 74 (295)
T 2zvb_A 1 MGELFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTYVKLLEEMGLLAGKEVVRK------GMTEELDRAEEALERALSG 74 (295)
T ss_dssp -CEEEEEECBTSSGGGSCHHHHHHHHHCSEEECCHHHHHHHHHHTCCTTSEEECT------TCCSHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCChHHHHHHHHHHHHcCCEEEEeCcHHHHHHHhhccCCCEEEec------CCchHHHHHHHHHHHHHCC
Confidence 489999999999999999999999999999996544322222321 234454322 1223346667777778899
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCC--------------------CcEEEEcCchHHHHHHHhcCCCCccCccccee
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKG--------------------IQVKVIPGITAASGIAAELGIPLTHRGVANSV 264 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~g--------------------i~veVIPGISS~~aaaA~lGipl~~~~~~~~v 264 (381)
++||+|++|||++|+++.++++.+++.+ ++++|||||||+++++|++|+||++ ++
T Consensus 75 ~~Va~L~~GDP~~yg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~veVIPGiSS~~aaaA~lG~plt~-----~~ 149 (295)
T 2zvb_A 75 QRVALVSGGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAH-----DT 149 (295)
T ss_dssp CEEEEEESBCTTSSSSHHHHHHHHHHTTCEECSCCCSSSEEEEETTEEEEEEEECCCCHHHHHHHTTEETTSS-----CE
T ss_pred CcEEEEeCCCCChhhhHHHHHHHHHHhcccccccccccccccccccCCCcEEEECCHhHHHHHHHHhCCCccC-----CC
Confidence 9999999999999999999999988754 8999999999999999999999975 47
Q ss_pred EEecCCCCCCCCChH-HHHHHhcCCCCcEEEEcCCC-----CHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehh
Q 016852 265 RFLTGHSRKGGTDPL-FVAENAADPDSTLVVYMGLS-----TLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELK 338 (381)
Q Consensus 265 ~ivs~hgr~~~~~~~-~l~~~l~~~~~tlVIl~~~~-----~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~ 338 (381)
.+++.|++....+.. ..++.+...+.++|+|+..+ ++.++++.|++. +++++++++++++|+++|+|..++++
T Consensus 150 ~~is~~~~~~~~~~l~~~l~~~~~~~~t~vl~~~~~~~r~~~~~~i~~~L~~~-~~~~~~v~vv~~l~~~~E~i~~~tL~ 228 (295)
T 2zvb_A 150 CLISLSDLLTPWPLIERRLHAAGQGDFVVVLYNPQSKRRDWQLRKSAEILLEY-RPKETPAALVKSAYRKRQEVALTTLE 228 (295)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHTTCEEEEESCCCSSCTTHHHHHHHHHTTT-SCTTCEEEEEESTTSTTCEEEEEETG
T ss_pred eEEeCCCCCCCHHHHHHHHHHhhcCCcEEEEEcCCcccchhhHHHHHHHHHhc-CCCCCEEEEEecCCCCCcEEEEeeHH
Confidence 789999753211111 01222334567889998643 688999999886 56689999999999999999999999
Q ss_pred hHHHhhccCCCCCcEEEEEcCccc
Q 016852 339 DLADKIGVEELVSPTLIIIGKVVS 362 (381)
Q Consensus 339 eL~~~l~~~~~~~~~viiIg~~~~ 362 (381)
++.+. .+..+++||||+...
T Consensus 229 el~~~----~~~~~svviig~~~~ 248 (295)
T 2zvb_A 229 GLREA----EAGMLTTVVIGNRQS 248 (295)
T ss_dssp GGGGC----CCCTTEEEEECCTTC
T ss_pred HHHhc----cCCCCEEEEECCccc
Confidence 99763 578999999998764
No 17
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=100.00 E-value=3.2e-35 Score=284.76 Aligned_cols=220 Identities=18% Similarity=0.180 Sum_probs=173.0
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCC---H----HHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHH
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVS---N----DVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLS 199 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~---~----~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~ 199 (381)
++||+||+| ||+++||++|+++|++||+|+++.+.. . .+++.++. ++++..++ ..++++.+.|.+
T Consensus 8 ~~l~lVG~G-Gd~~lLTl~A~~~L~~ADvV~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~------~~~e~~~~~i~~ 79 (294)
T 1wde_A 8 VTLLLVGWG-YAPGMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGE-ARVVEASR------RDLEERSREIVS 79 (294)
T ss_dssp CEEEEEECB-SSTTCCCHHHHHHHHHCSEEEEECSSSTTCHHHHHHHHHHHTS-SSEEECCH------HHHHTSHHHHTC
T ss_pred eEEEEEECC-CChHHhhHHHHHHHHhCCEEEEecccccccccchHHHHHhccC-CeEEecCh------HHHHHHHHHHHH
Confidence 589999999 999999999999999999999987662 2 24556654 55554321 134566677777
Q ss_pred HHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChH
Q 016852 200 FAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPL 279 (381)
Q Consensus 200 ~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~ 279 (381)
.++ |++||+|++|||+|||++.++++.+.+.|++++|||||||+++++|++|+||++++...++.+.+.|..+. .+.
T Consensus 80 ~~~-g~~Vv~L~~GDP~v~g~~~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~v~~~~~~~~p~--~~~ 156 (294)
T 1wde_A 80 RAL-DAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPI--SVA 156 (294)
T ss_dssp CSS-CCEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHTCCGGGEEEEEEECCGGGCCCCH--HHH
T ss_pred HhC-CCCEEEEeCCCCccccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHhCCCccCCCceEEEEeccCcccCC--ChH
Confidence 776 99999999999999999999999999999999999999999999999999999876544333333222211 122
Q ss_pred H-HHHHhcCCCCcEEEEcCCCC-----HHHHHHHHH---HC--------CC-CCCceeeeEecCCCCCcEEEEEehhhHH
Q 016852 280 F-VAENAADPDSTLVVYMGLST-----LPSLALKLM---HH--------GL-PPHTPAAAIERGTTPQQRIVFSELKDLA 341 (381)
Q Consensus 280 ~-l~~~l~~~~~tlVIl~~~~~-----~~~Ia~~L~---~~--------G~-~~~t~v~v~e~lg~~dErI~~~tL~eL~ 341 (381)
. +...+.....|+|+|+...+ +.++++.|+ +. |+ ++++++++++++|+++|+|+.++++++.
T Consensus 157 ~~l~~~l~~~~~tlvl~~~~~~~~~m~~~~i~~~L~~l~~~l~~~~~~~G~~~~~~~v~v~~~lg~~~E~i~~~tl~el~ 236 (294)
T 1wde_A 157 RRIYLNLCAGLHTTALLDVDERGVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLS 236 (294)
T ss_dssp HHHHHHHHHTCEEEEEECBCTTSCBCCHHHHHHHHHHHHHHHHHHHTSCCCGGGSCEEEEECCGGGCCEEEEESCHHHHH
T ss_pred HHHHHHHhcCCCeEEEEecccccccccHHHHHHHHHHHHHhhhccccccCcCCCCCEEEEEEeCCCCCcEEEEeeHHHHh
Confidence 2 22224444579999998887 899999998 76 76 6789999999999999999999999997
Q ss_pred HhhccCCC-CCcEEEEE-cCcc
Q 016852 342 DKIGVEEL-VSPTLIII-GKVV 361 (381)
Q Consensus 342 ~~l~~~~~-~~~~viiI-g~~~ 361 (381)
+. ++ +.|+++|| |+..
T Consensus 237 ~~----~~~~~~~~iiI~g~~~ 254 (294)
T 1wde_A 237 TA----DVEGGVYSIVIPARLS 254 (294)
T ss_dssp TC----CCCCCCCEEEECSSCC
T ss_pred hc----ccCCCCEEEEEeCCCc
Confidence 63 55 78999999 6543
No 18
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=100.00 E-value=2e-33 Score=268.68 Aligned_cols=221 Identities=18% Similarity=0.204 Sum_probs=158.8
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCC-----HHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHH
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVS-----NDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLS 199 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~-----~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~ 199 (381)
.+|+||+||+||||+++||++|+++|++||+|+++.+.. ...++.+.. .+..... ...++++.+.+.+
T Consensus 11 ~~g~l~vVG~GpGd~~lLTlrA~~~L~~ADvI~~~~~~~~l~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~i~~ 83 (268)
T 1vhv_A 11 HMSLLTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTSKLLSSIEEMEEFFG-KRVVELE------RSDLEENSFRLIE 83 (268)
T ss_dssp --CEEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCSSCHHHHHHHHT-SCCEEEC------HHHHTTTHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHhcCCEEEECCchHhhhccHHHHHHHhC-CCccccc------hhHHHHHHHHHHH
Confidence 369999999999999999999999999999999987652 122222211 1111100 1124456677777
Q ss_pred HHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChH
Q 016852 200 FAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPL 279 (381)
Q Consensus 200 ~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~ 279 (381)
.+++ ++||+|++|||+||+++.++++.+++.|++++|||||||+++++|++|+||++++...++.+ +.+. ....
T Consensus 84 ~a~~-~~Va~L~~GDP~iy~~~~~l~~~~~~~gi~vevIPGiSs~~aa~a~~G~pl~~~~~~~sv~~----~~~~-~~~~ 157 (268)
T 1vhv_A 84 RAKS-KSVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSW----HRSQ-TPVN 157 (268)
T ss_dssp HHTT-SEEEEEESBCTTSSSHHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHCCCGGGBCCCEEECS----SCCS-HHHH
T ss_pred HhCC-CCEEEEeCCCCcccCcHHHHHHHHHHCCCcEEEECCccHHHHHHHHcCCCcccCcceEEEEe----cCCC-chHH
Confidence 7754 89999999999999999999999998999999999999999999999999998665433322 1111 0111
Q ss_pred HHHHHhcCCCCcEEEEcC---CCCHHHHHHHHHH--CCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEE
Q 016852 280 FVAENAADPDSTLVVYMG---LSTLPSLALKLMH--HGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTL 354 (381)
Q Consensus 280 ~l~~~l~~~~~tlVIl~~---~~~~~~Ia~~L~~--~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~v 354 (381)
.+.+.+.....|+|+++. ...+.++++.|++ .+++ ++++++++++|+++|+++.++++++.+. ....++++
T Consensus 158 ~~~~~l~~~~~tlvl~d~~~~~~~~~~~~~~L~~l~~~~~-~~~v~v~~~l~~~~E~i~~~tl~el~~~---~~~~~~~~ 233 (268)
T 1vhv_A 158 VIKANRSIDAHTLLFLDLHPEPMTIGHAVENLIAEDAQMK-DLYAVGIARAGSGEEVVKCDRLENLKKI---DFGKPLHV 233 (268)
T ss_dssp HHHHHHHTTCBEEEEECCSSSCCCHHHHHHHHHHHCGGGG-GSEEEEEESTTSSSCEEEEEEGGGGGGS---CCCSSCEE
T ss_pred HHHHHhccCCCeEEEEcCchhhcCHHHHHHHHHHHHhcCC-CcEEEEEEcCCCCceEEEEEEHHHHHHh---hcCCCCeE
Confidence 223345555678888332 2345667777776 4566 8999999999999999999999999764 12367776
Q ss_pred EEE-cCccc
Q 016852 355 III-GKVVS 362 (381)
Q Consensus 355 iiI-g~~~~ 362 (381)
+|| ++++.
T Consensus 234 liI~~~~~~ 242 (268)
T 1vhv_A 234 MVVLAKTLH 242 (268)
T ss_dssp EEECCSSCC
T ss_pred EEEECCcCC
Confidence 666 66554
No 19
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=100.00 E-value=1e-33 Score=271.95 Aligned_cols=206 Identities=21% Similarity=0.253 Sum_probs=156.9
Q ss_pred CCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCC-CC--------HHHHhhh-CC-CceEEEeccccCC------
Q 016852 123 KCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRL-VS--------NDVLDLV-AP-NARLLYVGKTAGY------ 185 (381)
Q Consensus 123 ~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~-~~--------~~ll~~l-~~-~~e~i~~~~~~~~------ 185 (381)
..++|+||+||+||||+++||+||+++|++||+|+++.. .. ..+++.+ .+ +++++++++++..
T Consensus 18 ~~m~g~ly~VG~GPGdpellTlrA~~~L~~aDvI~~~~t~~~~~~l~~~a~~il~~~~~~~~~~~i~~~~pm~~~~~~~Y 97 (275)
T 3nd1_A 18 GSHMIELSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLRRQICAAHLTNPATKVIDFALPVRDASNPSY 97 (275)
T ss_dssp --CCEEEEEEECBSSCGGGCBHHHHHHHHHCSEEEEECCCSCGGGCHHHHHHHHHHHCCCTTCEEEEECCCCC-------
T ss_pred CCCCcEEEEEEeCCCCHHHHHHHHHHHHHhCCEEEecCCcccchhhhhhHHHHHHHhhcccCcEEEEecCCccccccchh
Confidence 445799999999999999999999999999999999643 22 4566654 44 3788887754321
Q ss_pred -------CCCCHHHHHHHHHHHHHc-CCeEEEEecCCCCCcCCHHHHHHHHHh-CCCcEEEEcCchHHHHHHHhcCCCCc
Q 016852 186 -------HSRTQEEIHELLLSFAEV-GATVVRLKGGDPLVFGRGGEEMDFLQQ-KGIQVKVIPGITAASGIAAELGIPLT 256 (381)
Q Consensus 186 -------~~~~~eei~~~i~~~~~~-Gk~VvvL~sGDP~~ys~~~~l~~~l~~-~gi~veVIPGISS~~aaaA~lGipl~ 256 (381)
+...++++.+.|.+++++ |++||+|++|||+||+++.++++.+.+ .|++++|||||||+++++|++|+||+
T Consensus 98 ~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Va~l~~GDP~i~~~~~~l~~~l~~~~gi~veviPGiSs~~aa~a~~g~pl~ 177 (275)
T 3nd1_A 98 RKGVDDWHDAIAETWLSEITAHVPGLEGRVALLVWGDPSLYDSTLRIAERLKSRLPLTTKVIPGITAIQALCAAHAIPLN 177 (275)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCTTSCEEEEEEESBCTTSSCSHHHHHHTTTTTSSEEEEEECCCCHHHHHHHHHTCCSS
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccchHHHHHHHHHHhcCCCEEEecCccHHHHHHHHcCCCCc
Confidence 112233455678888889 999999999999999999999999987 79999999999999999999999999
Q ss_pred cCcccceeEEecCCCCCCCCChHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEe
Q 016852 257 HRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSE 336 (381)
Q Consensus 257 ~~~~~~~v~ivs~hgr~~~~~~~~l~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~t 336 (381)
+++. .+.++++|.. ...+.+...+.++|+|++.+++.+|+ ..++++++++++|+++|+++.++
T Consensus 178 ~~~~--~~~~l~g~~~-------~~~~~~~~~~~~vvl~~~~~~l~~i~--------~~~~~v~v~~~l~~~~E~i~~gt 240 (275)
T 3nd1_A 178 DIGA--PVVITTGRQL-------RDHGWPAGTETVVAMLDGECSFQSLP--------PDGLTIFWGACVAMPEEVLIRGP 240 (275)
T ss_dssp CTTC--CEEEEEHHHH-------HHHCSCTTCSEEEEESCSSCGGGGSC--------CTTEEEEEEESTTSTTCEEEEEE
T ss_pred cCCc--EEEEEcCCCc-------chHHHHhCCCCEEEEECCcccHHHHh--------CCCCEEEehhccCCCCcEEEEEE
Confidence 8642 3555554311 11122333444556677777765543 24689999999999999999999
Q ss_pred hhhHHHhhc
Q 016852 337 LKDLADKIG 345 (381)
Q Consensus 337 L~eL~~~l~ 345 (381)
++++.+.+.
T Consensus 241 L~el~~~~~ 249 (275)
T 3nd1_A 241 VAEVTDEIL 249 (275)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988653
No 20
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.8e-32 Score=259.42 Aligned_cols=201 Identities=22% Similarity=0.287 Sum_probs=146.9
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcC-CCC--------HHHHhhhCCCceEEEeccccCCC---C------
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDR-LVS--------NDVLDLVAPNARLLYVGKTAGYH---S------ 187 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~-~~~--------~~ll~~l~~~~e~i~~~~~~~~~---~------ 187 (381)
||+||+||+||||+++||++|+++|++||+|+++. +.. ..+++.+.++++++.+++..... .
T Consensus 2 mg~l~vVG~GpGd~~lLTl~A~~~L~~Advv~~~~~~~~~~~l~~~~~~il~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 81 (251)
T 2npn_A 2 MRTIYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLLALRQKIVDTHAPGTPIYAVTDPERDRNPDNYEEEVR 81 (251)
T ss_dssp CEEEEEEECBSSCGGGCCHHHHHHHHHCSEEEEEC---CCHHHHHHHHHHHHHHSTTCCEEEECC----------CHHHH
T ss_pred CcEEEEEEeCCCChhHhhHHHHHHHHhCCEEEEeCCCCCchhhhhhHHHHHHHHhCCCEEEEecCCCcccchhhhhhhhh
Confidence 58999999999999999999999999999999853 332 22444443366777665320000 0
Q ss_pred ---CCHHHHH-HHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCC---CcEEEEcCchHHHHHHHhcCCCCccCcc
Q 016852 188 ---RTQEEIH-ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKG---IQVKVIPGITAASGIAAELGIPLTHRGV 260 (381)
Q Consensus 188 ---~~~eei~-~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~g---i~veVIPGISS~~aaaA~lGipl~~~~~ 260 (381)
...++.+ +.|.+++++|++||+|++|||+|||++.++++.+.+.| ++++|||||||+++++|++|+||++...
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~g~~Vv~l~~GDP~iy~~~~~l~~~l~~~g~~~i~veviPGiSs~~aa~a~~g~pl~~~~~ 161 (251)
T 2npn_A 82 RWHAERAHLLASTIRERTPDDGAVAFLVWGDPSLYDSTLRIIEHMRNLEDLHADVKVIPGITAVQVLTAEHGILINRIGE 161 (251)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEESBCTTSSCCHHHHHHHHHHHHTCCEEEEEECCCCHHHHHHHHHTCCSSCTTC
T ss_pred hhhhhHHHHHHHHHHHHHHCCCeEEEEeCCCcccccCHHHHHHHHHhcCCCCCcEEEeCChhHHHHHHHHcCCCcCCCCC
Confidence 1122223 46667777899999999999999999999999998877 8999999999999999999999997432
Q ss_pred cceeEEecCCCCCCCCChHHHHHHhcCCCCcEEEEcCC-CCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhh
Q 016852 261 ANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGL-STLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKD 339 (381)
Q Consensus 261 ~~~v~ivs~hgr~~~~~~~~l~~~l~~~~~tlVIl~~~-~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~e 339 (381)
.+.++ ||+.. ...+.....++|+|..+ ..+.+++ +.++++++++++|+++|+++.+++++
T Consensus 162 --~~~~~--~g~~l-------~~~l~~~~~t~vvl~~~~~~~~~l~--------~~~~~v~v~~~l~~~~E~i~~~~l~e 222 (251)
T 2npn_A 162 --AIHIT--TGRNL-------PETSAKDRRNCVVMLDGKTAWQDVA--------TEHTYMWWGAFLGTEQQVLRKGYVHE 222 (251)
T ss_dssp --CCEEE--ETTTG-------GGSCTTGGGEEEEESCSSCTHHHHC--------CTTEEEEEEESTTSTTCEEEEEEHHH
T ss_pred --eEEEE--ccchh-------hHHHHhcCCcEEEEEcchhhHHHhc--------CCCCEEEEEEECCCCCeEEEEcCHHH
Confidence 24445 44421 01222334677766544 4465543 35689999999999999999999999
Q ss_pred HHHhhc
Q 016852 340 LADKIG 345 (381)
Q Consensus 340 L~~~l~ 345 (381)
+.+.+.
T Consensus 223 l~~~~~ 228 (251)
T 2npn_A 223 IGAQVA 228 (251)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 977543
No 21
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.97 E-value=1.3e-31 Score=249.37 Aligned_cols=195 Identities=18% Similarity=0.243 Sum_probs=138.8
Q ss_pred CCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCC--ceEEEeccccCCCCCCHHHHHHHHHHHH
Q 016852 124 CGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPN--ARLLYVGKTAGYHSRTQEEIHELLLSFA 201 (381)
Q Consensus 124 ~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~--~e~i~~~~~~~~~~~~~eei~~~i~~~~ 201 (381)
+..|+||+||+||| +++||++|+++|++||+|+++.+ .++.++.. .+...+ .. .+++.++.|. .+
T Consensus 19 ~~~g~l~lVG~GpG-p~lLTlrA~~~L~~AdvI~~~~~----~l~~~~~~~~~~~~~~------~~-~~~~~~~~i~-~~ 85 (221)
T 2bb3_A 19 FSGHMIWIVGSGTC-RGQTTERAKEIIERAEVIYGSRR----ALELAGVVDDSRARIL------RS-FKGDEIRRIM-EE 85 (221)
T ss_dssp -CCSEEEEEECBSS-TTCCCHHHHHHHHHCSEEEECHH----HHHHTTCTTCTTEEEC------SC-CSHHHHHHHH-HH
T ss_pred CCCCEEEEEEeCCC-hhHhHHHHHHHHHhCCEEEECHH----HHHHhhhhcCCceEec------cc-hHHHHHHHHH-Hh
Confidence 34689999999999 99999999999999999999755 34554431 122211 11 2345556665 46
Q ss_pred HcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHH
Q 016852 202 EVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFV 281 (381)
Q Consensus 202 ~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l 281 (381)
++|++||+|++|||+||+.+..+.+ +. .+++++|||||||+++++|++|+||++ +.++++|+|... . .
T Consensus 86 ~~g~~Vv~L~~GDP~i~~~~~~l~~-~~-~~i~veviPGiSS~~aa~a~~g~pl~~------~~~vs~~~r~~~--~--~ 153 (221)
T 2bb3_A 86 GREREVAVISTGDPMVAGLGRVLRE-IA-EDVEIKIEPAISSVQVALARLKVDLSE------VAVVDCHAKDFD--A--E 153 (221)
T ss_dssp HHHSCEEEEESBCTTTTTSHHHHHT-SC-CSSEEEEECCCCHHHHHHHHHTCCGGG------EEEEEC----CC--H--H
T ss_pred cCCCcEEEEeCCCCccccCHHHHHH-hc-CCCCEEEECCHHHHHHHHHHhCCCcee------EEEEeecCCCch--H--H
Confidence 6889999999999999997776544 33 489999999999999999999999994 788999987532 1 2
Q ss_pred HHHhcCCCCcEEEEcCC-CCHHHHHHHHHHCCCCCCceeeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCc
Q 016852 282 AENAADPDSTLVVYMGL-STLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKV 360 (381)
Q Consensus 282 ~~~l~~~~~tlVIl~~~-~~~~~Ia~~L~~~G~~~~t~v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~ 360 (381)
++.+.... ++++++.. .++.++++ +++++++++|+++|+++.++++++ . .+.++++++|.+.
T Consensus 154 l~~l~~~~-~~vvl~~~~~~~~~l~~----------~~v~v~~~lg~~~E~i~~~~l~el-~-----~~~~~~slii~~~ 216 (221)
T 2bb3_A 154 LTELLKYR-HLLILADSHFPLERLGK----------RRVVLLENLCMEGERIREGNADSI-E-----LESDYTIIFVERE 216 (221)
T ss_dssp HHTHHHHC-EEEEEECTTCCCGGGTT----------CEEEEEESTTSTTCEEEEEETTTC-C-----CCCSSEEEEECCC
T ss_pred HHHHhcCC-eEEEEECCCCCHHHHhC----------CeeehhhhcCCCCcEEEEccHHHH-h-----hcCCCEEEEEEcC
Confidence 22333334 45555543 44533332 789999999999999999999998 3 2355666665543
No 22
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=99.88 E-value=1.5e-22 Score=170.23 Aligned_cols=111 Identities=23% Similarity=0.353 Sum_probs=93.4
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcC-CCCHHHHhhhCCC-ceEEEeccccCCCCCCHHHHHHHHHHHHH
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDR-LVSNDVLDLVAPN-ARLLYVGKTAGYHSRTQEEIHELLLSFAE 202 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~-~~~~~ll~~l~~~-~e~i~~~~~~~~~~~~~eei~~~i~~~~~ 202 (381)
++|+||+||+||||+++||++|+++|++||+|+++. ++...+++.+... ++++.+ +...++++.+.+.+.++
T Consensus 4 ~~g~ly~VG~GpGd~~~lT~~a~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~ 77 (117)
T 3hh1_A 4 HKGTLYVVATPLGNLDDMTFRAVNTLRNAGAIACEDTRRTSILLKHFGIEGKRLVSY------HSFNEERAVRQVIELLE 77 (117)
T ss_dssp CCCCEEEEEECSSCGGGSCHHHHHHHHHCSEEEESCHHHHHHHHHHTTCCSCCEEEC------CSTTHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCHHHhhHHHHHHHHhCCEEEEecCchHHHHHHHhCCCCCEEecc------CCccHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999954 4444567666433 565543 23467788889999999
Q ss_pred cCCeEEEEe-cCCCCCcCCHHHHHHHHHhCCCcEEEEcCc
Q 016852 203 VGATVVRLK-GGDPLVFGRGGEEMDFLQQKGIQVKVIPGI 241 (381)
Q Consensus 203 ~Gk~VvvL~-sGDP~~ys~~~~l~~~l~~~gi~veVIPGI 241 (381)
+|++|++++ +|||++|+++.++++.+++.|+++++|||+
T Consensus 78 ~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viPGp 117 (117)
T 3hh1_A 78 EGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPVPGA 117 (117)
T ss_dssp TTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC--
T ss_pred CCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeCCC
Confidence 999999999 899999999999999999999999999995
No 23
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=99.51 E-value=1.6e-13 Score=114.94 Aligned_cols=113 Identities=14% Similarity=0.179 Sum_probs=95.0
Q ss_pred cCchHHHHHHHhcCCCCccCcccceeEEecCCCCCCCCChHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHCCCCCCce
Q 016852 239 PGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTP 318 (381)
Q Consensus 239 PGISS~~aaaA~lGipl~~~~~~~~v~ivs~hgr~~~~~~~~l~~~l~~~~~tlVIl~~~~~~~~Ia~~L~~~G~~~~t~ 318 (381)
||+||+.+|.+.+|+|.+. +.|+ +|..... .....++.++..+.|+|||++++++.++++.|.+. ++++++
T Consensus 1 PG~sA~~~Al~~sGlp~~~------F~F~-Gflp~~~-~r~~~l~~la~~~~TlVfyesp~Rl~~~l~~L~~~-~g~~~~ 71 (115)
T 3ffy_A 1 SNATAFVPALVASGLPNEK------FCFE-GFLPQKK-GRMTKLKSLVDEHRTMVFYESPHRLLKTLTQFAEY-FGPERQ 71 (115)
T ss_dssp -CTTTHHHHHHHTTSCCSS------EEEE-ESCCSST-THHHHHHHTTTCCSEEEEEECTTTHHHHHHHHHHH-HCTTCE
T ss_pred CchhHHHHHHHHcCCCCCc------EEEE-eeCCCCc-cHHHHHHHHhCCCCeEEEEechHHHHHHHHHHHHh-cCCCCE
Confidence 8999999999999999774 6666 5532222 23334667788889999999999999999999986 778899
Q ss_pred eeeEecCCCCCcEEEEEehhhHHHhhccCCCCCcEEEEEcCc
Q 016852 319 AAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKV 360 (381)
Q Consensus 319 v~v~e~lg~~dErI~~~tL~eL~~~l~~~~~~~~~viiIg~~ 360 (381)
++++.+++.++|++++++++++.+.+.+.+.+.+.||||+..
T Consensus 72 v~v~relTk~~E~~~rgtl~el~~~~~~~~~kGe~vivv~~~ 113 (115)
T 3ffy_A 72 VSVSREISKIHEETVRGTLSELIEHFTATDPRGEIVIVLAGI 113 (115)
T ss_dssp EEEEEESSSSCEEEEEEEHHHHHHHHHHSCCCSSEEEEECCC
T ss_pred EEeeeccCCCceEEEEeeHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 999999999999999999999999887778899999999863
No 24
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=88.23 E-value=3.6 Score=35.08 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=59.8
Q ss_pred cccccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCc----ccchHHHHHHHHhcCEEEE-cCCCCH-HHH
Q 016852 94 NDIALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDP----DLLTLKAMKVIQKADLLLY-DRLVSN-DVL 167 (381)
Q Consensus 94 ~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~----elLTlkA~~aL~~ADvVi~-~~~~~~-~ll 167 (381)
+|-+-+..+++..|+.+++.+. .+++.+| .|||.. ..+-..-.+++..+|.|+. +.+... .+.
T Consensus 41 ~DyaHnP~si~a~l~al~~~~~----------~~riivv-f~~g~~s~r~k~~~~~~~~~~~~aD~vi~~~~~~~~~~~~ 109 (163)
T 3mvn_A 41 DDFAHHPTAITATIDALRAKVG----------QQRILAV-LEPRSNTMKMGVHKHELATSLQDADSVFIYQPPTIEWQVS 109 (163)
T ss_dssp EECCCSHHHHHHHHHHHHHHHT----------TSCEEEE-ECCC---------CHHHHHHHTTCSEEEEECC----CCHH
T ss_pred EcCCCCHHHHHHHHHHHHHhcC----------CCcEEEE-ECCCCcchhhHHHHHHHHHHHhcCCEEEEECCCCcccCHH
Confidence 3445566669999999865331 1455555 255421 1233344456778997775 322110 012
Q ss_pred hhhCC-CceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEe-cCCCCCcCCHHHHHHHH
Q 016852 168 DLVAP-NARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLK-GGDPLVFGRGGEEMDFL 228 (381)
Q Consensus 168 ~~l~~-~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~-sGDP~~ys~~~~l~~~l 228 (381)
+.+.. .....++ .+.++.++.+.+.++.| +++++. +|| |+..+..+++.|
T Consensus 110 ~~~~~~~~~~~~~--------~d~~eai~~~~~~~~~g-DvVLv~Gsg~--~~~~~~~l~~~l 161 (163)
T 3mvn_A 110 EVLANLAQPAISA--------DDVDELVMRIVQQAKPN-DHILIMSNGA--FGGIHQKLLTAL 161 (163)
T ss_dssp HHHTTCCSCEEEE--------SSHHHHHHHHHHHCCTT-CEEEEECSSC--GGGHHHHHHHHT
T ss_pred HHHhhCCCCeEEE--------CCHHHHHHHHHHhCCCC-CEEEEECCCC--HHHHHHHHHHHH
Confidence 22221 1122222 25678888888877666 555554 787 777666666654
No 25
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=73.90 E-value=37 Score=28.06 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=63.0
Q ss_pred ccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEc--CCCCHHH--------
Q 016852 97 ALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYD--RLVSNDV-------- 166 (381)
Q Consensus 97 ~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~--~~~~~~l-------- 166 (381)
+++...++++|.. +.+|-+||+++ +++.+--+..+.|.+...=+++ ... +.+
T Consensus 9 ~m~~~~l~~ll~~----------------p~~iaVVGas~-~~g~~G~~~~~~l~~~G~~v~~Vnp~~-~~i~G~~~y~s 70 (144)
T 2d59_A 9 GLTDEDIREILTR----------------YKKIALVGASP-KPERDANIVMKYLLEHGYDVYPVNPKY-EEVLGRKCYPS 70 (144)
T ss_dssp CCCHHHHHHHHHH----------------CCEEEEETCCS-CTTSHHHHHHHHHHHTTCEEEEECTTC-SEETTEECBSS
T ss_pred CCCHHHHHHHHcC----------------CCEEEEEccCC-CCCchHHHHHHHHHHCCCEEEEECCCC-CeECCeeccCC
Confidence 3555667777765 47899999996 6666666666777776643432 211 111
Q ss_pred HhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCc
Q 016852 167 LDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQ 234 (381)
Q Consensus 167 l~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~ 234 (381)
++-++...++..+. ...+...+.+.+..+.|-+++++.+|-. ..++.+.+++.|++
T Consensus 71 l~~l~~~vDlvvi~-------vp~~~~~~vv~~~~~~gi~~i~~~~g~~-----~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 71 VLDIPDKIEVVDLF-------VKPKLTMEYVEQAIKKGAKVVWFQYNTY-----NREASKKADEAGLI 126 (144)
T ss_dssp GGGCSSCCSEEEEC-------SCHHHHHHHHHHHHHHTCSEEEECTTCC-----CHHHHHHHHHTTCE
T ss_pred HHHcCCCCCEEEEE-------eCHHHHHHHHHHHHHcCCCEEEECCCch-----HHHHHHHHHHcCCE
Confidence 11111122322221 2334555666666777877777776642 56778888888665
No 26
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=53.48 E-value=40 Score=27.90 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=18.8
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcC
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKAD 154 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~AD 154 (381)
+.+|-+||+++ +++.+--...+.|.+..
T Consensus 13 p~~IavIGas~-~~g~~G~~~~~~L~~~G 40 (145)
T 2duw_A 13 TRTIALVGASD-KPDRPSYRVMKYLLDQG 40 (145)
T ss_dssp CCCEEEESCCS-CTTSHHHHHHHHHHHHT
T ss_pred CCEEEEECcCC-CCCChHHHHHHHHHHCC
Confidence 46799999986 55555555555566543
No 27
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=51.48 E-value=99 Score=25.27 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=53.7
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcCEEEEc--CC-CCHHH--------HhhhCCCceEEEeccccCCCCCCHHHHH
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYD--RL-VSNDV--------LDLVAPNARLLYVGKTAGYHSRTQEEIH 194 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~--~~-~~~~l--------l~~l~~~~e~i~~~~~~~~~~~~~eei~ 194 (381)
+.+|-+||++. +++.+.-+..+.+.+...=+++ .. ..+.+ ++-++...++..+. ...+...
T Consensus 13 p~~vaVvGas~-~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~-------vp~~~~~ 84 (140)
T 1iuk_A 13 AKTIAVLGAHK-DPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVF-------RPPSALM 84 (140)
T ss_dssp CCEEEEETCCS-STTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEEC-------SCHHHHT
T ss_pred CCEEEEECCCC-CCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEE-------eCHHHHH
Confidence 57899999985 6677777777777776543442 21 01111 11111122222221 1234444
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEE
Q 016852 195 ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVK 236 (381)
Q Consensus 195 ~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~ve 236 (381)
+.+.+..+.|-+.+++.+|-. ..++.+.+++.|+++-
T Consensus 85 ~v~~~~~~~gi~~i~~~~g~~-----~~~~~~~a~~~Gir~v 121 (140)
T 1iuk_A 85 DHLPEVLALRPGLVWLQSGIR-----HPEFEKALKEAGIPVV 121 (140)
T ss_dssp TTHHHHHHHCCSCEEECTTCC-----CHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHcCCCEEEEcCCcC-----HHHHHHHHHHcCCEEE
Confidence 455555566666666666542 3677788888887753
No 28
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=49.73 E-value=88 Score=31.52 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=60.5
Q ss_pred ccccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecC---CCCcccchHHHHHHHHhcCEEEE-cCCC----CHHH
Q 016852 95 DIALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTG---PGDPDLLTLKAMKVIQKADLLLY-DRLV----SNDV 166 (381)
Q Consensus 95 ~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiG---PGd~elLTlkA~~aL~~ADvVi~-~~~~----~~~l 166 (381)
|.+-....++..++.++.... . ...+.+.|.+ +.. +..-.....+++.+|.|+. +... ...+
T Consensus 392 D~ahnp~~~~a~l~~l~~~~~--~-------~r~i~V~g~~~~~~~~-g~~~~~~~~~~~~aD~vil~~~~~r~~~~~~l 461 (524)
T 3hn7_A 392 DFAHHPTAITTTLDGAKKKLA--D-------RRLWAIIEPRSNTMKM-GIHQDSLAQSATLADHTLWYEPTGLEWGLKEV 461 (524)
T ss_dssp ECCCSHHHHHHHHHHHHHHHT--T-------SCEEEEEECCCCSSCC-SCCTTHHHHHTTTSSEEEEECCTTCCCSHHHH
T ss_pred ECCCCHHHHHHHHHHHHhhcC--C-------CCEEEEECCCCcchhh-hhhHHHHHHHHhcCCEEEEcCCCCCCCCHHHH
Confidence 444344447777777654321 1 1344455642 111 1222333456788997765 3221 1223
Q ss_pred HhhhC----CCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEe-cCCCCCcCCHHHHHHHHHh
Q 016852 167 LDLVA----PNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLK-GGDPLVFGRGGEEMDFLQQ 230 (381)
Q Consensus 167 l~~l~----~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~-sGDP~~ys~~~~l~~~l~~ 230 (381)
.+.+. .......+ .+.++.++.+.+.++.| +++++. .|| |+..+..+++.|++
T Consensus 462 ~~~~~~~~~~~~~~~~~--------~~~~eai~~~~~~a~~g-D~VLv~GaG~--~~~v~~~~~~~l~~ 519 (524)
T 3hn7_A 462 IDNATIANPSIGSQQVL--------SSVDDIIKHICTHAKAG-DAIVIMSNGG--FEGIHQRLLTALGN 519 (524)
T ss_dssp HHHHHHHCGGGCCEEEE--------SCHHHHHHHHHHHCCTT-CEEEEEESSC--GGGHHHHHHHHHHH
T ss_pred HHHHHhhccCCCCeEEE--------CCHHHHHHHHHHhCCCC-CEEEEEcCCC--HHHHHHHHHHHHHh
Confidence 33331 01122222 25677888888777666 454444 677 78878888888764
No 29
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=46.21 E-value=71 Score=28.75 Aligned_cols=99 Identities=6% Similarity=0.050 Sum_probs=58.5
Q ss_pred cccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHH--hcCEEEEcCCCCHHHHhhhCCC
Q 016852 96 IALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQ--KADLLLYDRLVSNDVLDLVAPN 173 (381)
Q Consensus 96 ~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~--~ADvVi~~~~~~~~ll~~l~~~ 173 (381)
.-.+.++|.++.+.+..+. .....+.++-. +.+.-...|.+.++ .+|+|+....+...+.+.+ +
T Consensus 17 ~i~~~~~L~~~~~~i~~e~---------~~~~~I~vi~~---~le~av~~a~~~~~~~~~dVIISRGgta~~Lr~~~--~ 82 (225)
T 2pju_A 17 WTVSVTRLFELFRDISLEF---------DHLANITPIQL---GFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRL--S 82 (225)
T ss_dssp EEECCHHHHHHHHHHHTTT---------TTTCEEEEECC---CHHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHTTC--S
T ss_pred EEEchHHHHHHHHHHHHhh---------CCCceEEEecC---cHHHHHHHHHHHHhcCCCeEEEeCChHHHHHHhhC--C
Confidence 3456677888777742211 11245666542 33444445666665 3899998655444444433 4
Q ss_pred ceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCC
Q 016852 174 ARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDP 215 (381)
Q Consensus 174 ~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP 215 (381)
..++.+. .+.-++...|...-+.+++|+++..++.
T Consensus 83 iPVV~I~-------vs~~Dil~aL~~a~~~~~kIavVg~~~~ 117 (225)
T 2pju_A 83 VPVILIK-------PSGYDVLQFLAKAGKLTSSIGVVTYQET 117 (225)
T ss_dssp SCEEEEC-------CCHHHHHHHHHHTTCTTSCEEEEEESSC
T ss_pred CCEEEec-------CCHHHHHHHHHHHHhhCCcEEEEeCchh
Confidence 5666553 2455777777766666778999987764
No 30
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=44.92 E-value=95 Score=27.01 Aligned_cols=95 Identities=11% Similarity=0.037 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEE
Q 016852 99 QLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLY 178 (381)
Q Consensus 99 ~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~ 178 (381)
..++|.++++.+..+.. ..+.++= |+.+.-...|.++=+.+|+|+....+...+.+.+ +..++.
T Consensus 12 py~~l~~~~~~i~~e~~-----------~~i~i~~---~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~~--~iPVV~ 75 (196)
T 2q5c_A 12 QNENLLNLFPKLALEKN-----------FIPITKT---ASLTRASKIAFGLQDEVDAIISRGATSDYIKKSV--SIPSIS 75 (196)
T ss_dssp SCHHHHHHHHHHHHHHT-----------CEEEEEE---CCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTC--SSCEEE
T ss_pred ccHHHHHHHHHHHhhhC-----------CceEEEE---CCHHHHHHHHHHhcCCCeEEEECChHHHHHHHhC--CCCEEE
Confidence 45667777776533221 1333331 2334334445554246899998655544444433 456665
Q ss_pred eccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCC
Q 016852 179 VGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPL 216 (381)
Q Consensus 179 ~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~ 216 (381)
+. .+.-++...+...-+.+.+|+++..++..
T Consensus 76 I~-------~s~~Dil~al~~a~~~~~kIavvg~~~~~ 106 (196)
T 2q5c_A 76 IK-------VTRFDTMRAVYNAKRFGNELALIAYKHSI 106 (196)
T ss_dssp EC-------CCHHHHHHHHHHHGGGCSEEEEEEESSCS
T ss_pred Ec-------CCHhHHHHHHHHHHhhCCcEEEEeCcchh
Confidence 53 24567888887777778899999877653
No 31
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=43.28 E-value=1.3e+02 Score=27.73 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=60.5
Q ss_pred CCCccc-chHHHHHHHHh--cCEE-EEcCCCCHHHHhhhCCCceEEE-eccccCCCCCCHHHHHHHHHHHHHc--CCeEE
Q 016852 136 PGDPDL-LTLKAMKVIQK--ADLL-LYDRLVSNDVLDLVAPNARLLY-VGKTAGYHSRTQEEIHELLLSFAEV--GATVV 208 (381)
Q Consensus 136 PGd~el-LTlkA~~aL~~--ADvV-i~~~~~~~~ll~~l~~~~e~i~-~~~~~~~~~~~~eei~~~i~~~~~~--Gk~Vv 208 (381)
.|+|++ -|.+..+.|.+ ||+| ++-.. ++.+.+ + .++. ..........+.+++.+.+.+.-++ .-.++
T Consensus 28 aGdP~~~~~~~~~~~l~~~GaD~iElGiPf-SDP~aD----G-pvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Piv 101 (271)
T 3nav_A 28 IGDPNPEQSLAIMQTLIDAGADALELGMPF-SDPLAD----G-PTIQGANLRALAAKTTPDICFELIAQIRARNPETPIG 101 (271)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCSSEEEECCC-CCGGGC----C-SHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCC-CCCCCC----C-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 356654 68888898876 6988 45332 211111 0 0000 0000001113455666666554433 34677
Q ss_pred EEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchH-----HHHHHHhcCCC
Q 016852 209 RLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA-----ASGIAAELGIP 254 (381)
Q Consensus 209 vL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS-----~~aaaA~lGip 254 (381)
++..=+|.+--.....++.+.+.|++--++|...- +..++...|+.
T Consensus 102 lm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~ 152 (271)
T 3nav_A 102 LLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQ 152 (271)
T ss_dssp EEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCE
T ss_pred EEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCe
Confidence 77666774432345677888888999999987642 34444455554
No 32
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=40.59 E-value=24 Score=31.45 Aligned_cols=39 Identities=18% Similarity=0.072 Sum_probs=31.1
Q ss_pred cCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCc
Q 016852 203 VGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGI 241 (381)
Q Consensus 203 ~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGI 241 (381)
++++|++-.+|--+.|.-+.++++.|++.|++|++|---
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~~g~eV~vv~T~ 44 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVELGAKVTPFVTH 44 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhhCCCEEEEEECh
Confidence 578899888888777755778888888888888888543
No 33
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=40.39 E-value=90 Score=31.73 Aligned_cols=116 Identities=14% Similarity=0.081 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCC-CceEEEecc
Q 016852 103 LKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAP-NARLLYVGK 181 (381)
Q Consensus 103 l~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~-~~e~i~~~~ 181 (381)
-++++...|.+++- ...|++++-+ |.|+...--++|...-.-+ .|+.+-... .+-..++. -...
T Consensus 145 yeT~~~~~rk~~gg-------~L~G~~~lTa-GLGGMgGAQplA~~mag~v-~i~~Evd~~-ri~~R~~~gyld~----- 209 (551)
T 1x87_A 145 YETFAEVARQHFGG-------TLAGTITLTA-GLGGMGGAQPLAVTMNGGV-CLAIEVDPA-RIQRRIDTNYLDT----- 209 (551)
T ss_dssp HHHHHHHHHHHSTT-------CCTTCEEEEE-CCSTTGGGHHHHHHHTTCE-EEEEESCHH-HHHHHHHTTSCSE-----
T ss_pred HHHHHHHHHHhcCC-------CCCceEEEEe-cCCccchhhHHHHHHcCce-EEEEEECHH-HHHHHHhCCCcee-----
Confidence 57778876666542 2358887765 7777777777776654433 333322111 11222211 1111
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchH
Q 016852 182 TAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA 243 (381)
Q Consensus 182 ~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS 243 (381)
...+.++.++.+.++.++++.+.+-.-|. ..++...|-++|+.+.++-=-+|
T Consensus 210 ----~~~~ldeal~~~~~a~~~~~~~SIg~~GN------aadv~~~l~~~~i~~DlvtDQTS 261 (551)
T 1x87_A 210 ----MTDSLDAALEMAKQAKEEKKALSIGLVGN------AAEVLPRLVETGFVPDVLTDQTS 261 (551)
T ss_dssp ----EESCHHHHHHHHHHHHHTTCCEEEEEESC------HHHHHHHHHHTTCCCSEECCCSC
T ss_pred ----EcCCHHHHHHHHHHHHHcCCceEEEEecc------HHHHHHHHHHCCCCCCCCCCCcc
Confidence 11367889999999999999888877775 78889988888888887766555
No 34
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=40.17 E-value=80 Score=33.49 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=53.5
Q ss_pred HHHHHHhcCEEEEcCCC-CHHHHhhhC---CCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEe-cCCCCCcCC
Q 016852 146 AMKVIQKADLLLYDRLV-SNDVLDLVA---PNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLK-GGDPLVFGR 220 (381)
Q Consensus 146 A~~aL~~ADvVi~~~~~-~~~ll~~l~---~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~-sGDP~~ys~ 220 (381)
-.++|++-|+++...+. -+.+++.+. .+..++.+.-. .+.-..-..+.+.|.++++.|+.|-+|+ .|-.+....
T Consensus 336 iF~~I~~~DiLl~~p~~sf~~vi~~I~~A~~DP~V~sIk~t-lYr~~~ds~Iv~ALi~AA~rGv~V~vLvel~arfdee~ 414 (705)
T 2o8r_A 336 LMEGIRRKDYLIHVPYYTYDYVVRLLMEAAISPDVSEIRLT-QYRVAENSSIISALEAAAQSGKKVSVFVELKARFDEEN 414 (705)
T ss_dssp HHHHHHHCCEEEEETTBCSHHHHHHHHHHHTCTTEEEEEEE-ESCCCSCCHHHHHHHHHHHTTCEEEEEECCCSCC----
T ss_pred HHHHHhhCCeEeeChhHhHHHHHHHHHHhccCCCceEEEEE-EEEEcCCHHHHHHHHHHHHCCCEEEEEEeCCCCcchhh
Confidence 57899999999985543 344555543 22222222100 1111111578899999999999998888 443222212
Q ss_pred HHHHHHHHHhCCCcEEEEcCc
Q 016852 221 GGEEMDFLQQKGIQVKVIPGI 241 (381)
Q Consensus 221 ~~~l~~~l~~~gi~veVIPGI 241 (381)
.....+.|++.|+. |+.|+
T Consensus 415 ni~wa~~Le~aGv~--Vv~g~ 433 (705)
T 2o8r_A 415 NLRLSERMRRSGIR--IVYSM 433 (705)
T ss_dssp CHHHHHHHHHHTCE--EEECC
T ss_pred hHHHHHHHHHCCCE--EEEcc
Confidence 23456788888665 45564
No 35
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=39.93 E-value=28 Score=31.12 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=31.1
Q ss_pred cCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHH
Q 016852 203 VGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAA 244 (381)
Q Consensus 203 ~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~ 244 (381)
+||+|++.++|-...|-.+.++++.|++.|++|.+|---++.
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~~g~eV~vv~T~~A~ 45 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIAEGAEVRPVVSYTVQ 45 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHHTTCEEEEEECC---
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHhCCCEEEEEEehHHH
Confidence 578999999997666654668888998889999888665554
No 36
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=38.14 E-value=90 Score=31.77 Aligned_cols=116 Identities=11% Similarity=0.103 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCC-CceEEEecc
Q 016852 103 LKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAP-NARLLYVGK 181 (381)
Q Consensus 103 l~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~-~~e~i~~~~ 181 (381)
-++++...|.+++- ...|++++-+ |.|+...--++|...-.- =.|+.+-... .+-..++. -...
T Consensus 146 yeT~~~~~rk~~gg-------~L~G~~~lTa-GLGGMgGAQplA~~mag~-v~i~~Evd~~-ri~~R~~~gyld~----- 210 (552)
T 2fkn_A 146 YETFAELARQHFGG-------SLKGTLTLTA-GLGGMGGAQPLSVTMNEG-VVIAVEVDEK-RIDKRIETKYCDR----- 210 (552)
T ss_dssp HHHHHHHHHHHSSS-------CCTTCEEEEE-CCSTTTTHHHHHHHHTTC-EEEEEESCHH-HHHHHHHTTSCSE-----
T ss_pred HHHHHHHHHHhcCC-------CCCceEEEEe-cCCccchhhHHHHHHcCc-eEEEEEECHH-HHHHHHhCCccee-----
Confidence 57778876655532 2358887765 777776666777654433 3333332111 11222211 1111
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchH
Q 016852 182 TAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA 243 (381)
Q Consensus 182 ~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS 243 (381)
...+.++.++.+.++.++++.+.+-.-|. ..++...|-++|+.+.++-=-+|
T Consensus 211 ----~~~~ldeal~~~~~a~~~~~~~SIg~~GN------aadv~~~l~~~~i~~DlvtDQTS 262 (552)
T 2fkn_A 211 ----KTASIEEALAWAEEAKLAGKPLSIALLGN------AAEVHHTLLNRGVKIDIVTDQTS 262 (552)
T ss_dssp ----EESCHHHHHHHHHHHHHTTCCEEEEEESC------HHHHHHHHHTTTCCCSEECCCSC
T ss_pred ----EcCCHHHHHHHHHHHHHcCCceEEEEecc------HHHHHHHHHHCCCCCCCCCCCcc
Confidence 11367889999999999999888877775 78899988888888877765555
No 37
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=37.89 E-value=38 Score=27.66 Aligned_cols=46 Identities=13% Similarity=0.277 Sum_probs=33.7
Q ss_pred ccccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCccc-chHHHHHHHHhcCEEE
Q 016852 95 DIALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDL-LTLKAMKVIQKADLLL 157 (381)
Q Consensus 95 ~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~el-LTlkA~~aL~~ADvVi 157 (381)
-.+.+.++++.+|+. ...+.+||+|. .... +.++.++.|++..+-+
T Consensus 46 ~~~l~~~~l~~ll~~----------------~~evliiGtG~-~~~~~~~~~~~~~l~~~gI~v 92 (122)
T 2ab1_A 46 SPGVQPADVKEVVEK----------------GVQTLVIGRGM-SEALKVPSSTVEYLKKHGIDV 92 (122)
T ss_dssp SSCCCHHHHHHHHTT----------------CCSEEEEEECS-SCCSCCCHHHHHHHHHTTCEE
T ss_pred hhHCCHHHHHHHhhC----------------CCCEEEECCCC-CCccCCCHHHHHHHHHcCCEE
Confidence 345777778777554 37899999997 4555 8899999888877544
No 38
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=36.23 E-value=71 Score=29.81 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCC--cEEEEcC
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGI--QVKVIPG 240 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi--~veVIPG 240 (381)
.+.+++.+.+....+.|-+-+.+..|+|++.....++++.+++.+. .+.+.-.
T Consensus 50 ls~e~i~~~i~~~~~~g~~~i~~tGGEPll~~~l~~li~~~~~~~~~~~i~i~TN 104 (340)
T 1tv8_A 50 LTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTN 104 (340)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEESSCGGGSTTHHHHHHHHTTCTTCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccchhhHHHHHHHHHhCCCCCeEEEEeC
Confidence 4567777766666666767778899999998888888888888755 6766543
No 39
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=36.02 E-value=94 Score=27.36 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchH
Q 016852 191 EEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA 243 (381)
Q Consensus 191 eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS 243 (381)
....+.+...++.|++|+..+++.+.......++.+.+++.|..+-+-+|.+-
T Consensus 61 ~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g 113 (236)
T 2dc1_A 61 QAVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIG 113 (236)
T ss_dssp HHHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCS
T ss_pred HHHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCcccc
Confidence 34456666778899988887776654443225677777777888777777654
No 40
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=35.36 E-value=91 Score=25.09 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEc
Q 016852 191 EEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIP 239 (381)
Q Consensus 191 eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIP 239 (381)
+++.+.|.+.++.|-+|-++..+.+.........++.|.+.|+++...+
T Consensus 40 ~~i~~aL~~a~~rGV~Vril~~~~~~~~~~~~~~~~~L~~~gv~v~~~~ 88 (155)
T 1byr_A 40 PDIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTDS 88 (155)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCccccccccHHHHHHHHHCCCeEEEcC
Confidence 4677888888889999988887766542233456677888899998874
No 41
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=34.23 E-value=87 Score=31.90 Aligned_cols=116 Identities=12% Similarity=0.100 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCC-CceEEEecc
Q 016852 103 LKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAP-NARLLYVGK 181 (381)
Q Consensus 103 l~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~-~~e~i~~~~ 181 (381)
-++++...|.+++- ...|++++-+ |.|+...--++|...-.- =.|+.+-... .+-..++. -...
T Consensus 150 yeT~~~~~rk~~gg-------~L~G~~~lTa-GLGGMgGAQplA~~mag~-v~i~~Evd~~-ri~~R~~~gyld~----- 214 (557)
T 1uwk_A 150 YETFVEAGRQHYGG-------SLKGKWVLTA-GLGGMGGAQPLAATLAGA-CSLNIESQQS-RIDFRLETRYVDE----- 214 (557)
T ss_dssp HHHHHHHHHHHTSS-------CCTTCEEEEE-CCSTTTTHHHHHHHHTTC-EEEEEESCHH-HHHHHHHTTSCCE-----
T ss_pred HHHHHHHHHHhcCC-------CCCceEEEEe-cCCccchhhHHHHHHcCc-eEEEEEECHH-HHHHHHhCCCcee-----
Confidence 57778876656542 2358887764 777777666777655433 3333332111 11122211 1111
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchH
Q 016852 182 TAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA 243 (381)
Q Consensus 182 ~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS 243 (381)
...+.++.++.+.++.++++.+.+-.-|. ..++...|-++|+.+.++-=-+|
T Consensus 215 ----~~~~ldeal~~~~~a~~~~~~~SIg~~GN------aadv~~~l~~~~i~~DlvtDQTS 266 (557)
T 1uwk_A 215 ----QATDLDDALVRIAKYTAEGKAISIALHGN------AAEILPELVKRGVRPDMVTDQTS 266 (557)
T ss_dssp ----ECSSHHHHHHHHHHHHHTTCCCEEEEESC------HHHHHHHHHHHTCCCSEECCCSC
T ss_pred ----EcCCHHHHHHHHHHHHHcCCceEEEEecc------HHHHHHHHHHCCCCCCCCCCCcc
Confidence 12367889999999988888888876665 78888888887887777765554
No 42
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=34.13 E-value=79 Score=25.66 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=34.4
Q ss_pred HHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCc
Q 016852 201 AEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGI 241 (381)
Q Consensus 201 ~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGI 241 (381)
++..-.|+++-.|....+....++.+.|++.|+.+++.+=.
T Consensus 58 l~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 58 VEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp HTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred hhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 34556899999999999867788999999999999998744
No 43
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=34.12 E-value=1.8e+02 Score=24.05 Aligned_cols=53 Identities=17% Similarity=0.006 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEc-CchHHHHHHH
Q 016852 195 ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIP-GITAASGIAA 249 (381)
Q Consensus 195 ~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIP-GISS~~aaaA 249 (381)
+.+.+.+.+.++|.++-.|... ..+.++...|...|.++..++ +...+.....
T Consensus 30 ~~~~~~i~~a~~I~i~G~G~S~--~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 83 (187)
T 3sho_A 30 EAAVEAICRADHVIVVGMGFSA--AVAVFLGHGLNSLGIRTTVLTEGGSTLTITLA 83 (187)
T ss_dssp HHHHHHHHHCSEEEEECCGGGH--HHHHHHHHHHHHTTCCEEEECCCTHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecCchH--HHHHHHHHHHHhcCCCEEEecCCchhHHHHHh
Confidence 4444555566788887777533 234456667777899999999 4555544443
No 44
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=33.75 E-value=2.7e+02 Score=27.13 Aligned_cols=124 Identities=21% Similarity=0.287 Sum_probs=69.9
Q ss_pred ccccCHHH-HHHHHHHHHHhhhhcccCCCCCCCCEEEEEec---CCCCcccchHHHHHHHHhcCEEEE-cCCCCHHHHhh
Q 016852 95 DIALQLPE-LKKLLQVLREKREEDRVGAEKCGPGNVYLVGT---GPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDL 169 (381)
Q Consensus 95 ~~~~~~~e-l~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGi---GPGd~elLTlkA~~aL~~ADvVi~-~~~~~~~ll~~ 169 (381)
.+++++|| |...-...-+..+. ..-+++|.|= |.-+.+..+. +.+ .||+|+. +..- +..
T Consensus 57 rVaLQfPdgLl~~a~~Ia~~L~~--------~~~e~~IlgDttYGACCVDe~aA---~~v-~aD~lVHyGHsC----L~~ 120 (378)
T 3lzd_A 57 RVLIQSPEGLRREAEELAGFLEE--------NNIEVFLHGEINYGACDPADREA---KLV-GCDALIHLGHSY----MKL 120 (378)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHT--------TTCEEEEECSCCCCTTSCCHHHH---HHT-TCSEEEEEECCC----CSC
T ss_pred EEEEECCHHHHHHHHHHHHHHhh--------cCceEEEEcCCcccCcccCHHHH---hhc-CCCEEEEcCCCc----CCc
Confidence 57888888 55444333222221 1257787764 5455665443 333 5899984 3321 111
Q ss_pred hCCCceEEEeccccCCCCCCHHHHHHHHHHHHHc-CCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcC
Q 016852 170 VAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEV-GATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPG 240 (381)
Q Consensus 170 l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~-Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPG 240 (381)
.....++|+- .....+.+.+.+.+.+.... +++|+++ +|.-+......+.+.|.+.|+++.+-.+
T Consensus 121 -~~~lpvlYVf---~~~~iD~~~~~~~~~~~~~~~~~~i~L~--~tiq~~~~l~~~~~~L~~~g~~v~i~~~ 186 (378)
T 3lzd_A 121 -PLEVPTIFVP---AFARVSVVEALKENIGEIKKLGRKIIVT--TTAQHIHQLKEAKEFLESEGFEVSIGRG 186 (378)
T ss_dssp -CCSSCEEEEE---CCCCCCCHHHHHHTHHHHHTTCSEEEEE--ECGGGGGGHHHHHHHHHHTTCEEECCCC
T ss_pred -ccCCCEEEEe---ccCCCCHHHHHHHHHHhccCcCCeEEEE--EcHHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 1233455542 22233445666666665543 5777666 6777777777888899988887755433
No 45
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=33.29 E-value=69 Score=32.03 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=58.8
Q ss_pred ccccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCC-c--ccchHHHHHHHHhcCEEEE-cCC---------
Q 016852 95 DIALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGD-P--DLLTLKAMKVIQKADLLLY-DRL--------- 161 (381)
Q Consensus 95 ~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd-~--elLTlkA~~aL~~ADvVi~-~~~--------- 161 (381)
|-+-.-.+++..++.++..+. .+++++|- ||.. . ..+-..-.+++..+|.|+. +..
T Consensus 354 DyaHnp~~i~a~l~al~~~~~----------~~rii~V~-g~~~~~r~k~~~~~~~~~~~~aD~vilt~~~~~~e~p~~g 422 (494)
T 4hv4_A 354 DYGHHPTEVDATIKAARAGWP----------DKRIVMLF-QPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPG 422 (494)
T ss_dssp ECCCSHHHHHHHHHHHHHHCT----------TSEEEEEE-CCBCHHHHHHTHHHHHHHHTTSSEEEEECCBCTTCCCCTT
T ss_pred eCCCCHHHHHHHHHHHHhhcC----------CCeEEEEE-cCCCCCchHHHHHHHHHHHhcCCEEEEeCCcCCccCCcCC
Confidence 444456669999999754321 24676664 4321 1 1112233456778998875 211
Q ss_pred -CCHHHHhhhCCC--ceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEe-cCCCCCcCCHHHHHHHHH
Q 016852 162 -VSNDVLDLVAPN--ARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLK-GGDPLVFGRGGEEMDFLQ 229 (381)
Q Consensus 162 -~~~~ll~~l~~~--~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~-sGDP~~ys~~~~l~~~l~ 229 (381)
..+.+.+.+... .....+. +.++..+.+.+.++.| +++++. +|| |+..+..+++.|.
T Consensus 423 ~~~~~l~~~~~~~g~~~~~~~~--------~~~eAv~~a~~~a~~g-DvVL~~GaG~--~~~~~~~l~~~l~ 483 (494)
T 4hv4_A 423 ADSRALCRTIRNRGKLDPILVP--------DSESAPEMLAQILNGE-DLILVQGAGN--IGKIARKLAEHKL 483 (494)
T ss_dssp CSHHHHHHHHHTTTSCCCEEEC--------CTTTHHHHHHHHCCTT-EEEEEECSST--HHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHhhCCCCeEEeC--------CHHHHHHHHHHhCCCC-CEEEEECCCC--HHHHHHHHHHHHc
Confidence 123344444321 1122221 2345667777666555 666665 676 6665666666554
No 46
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=33.15 E-value=23 Score=29.34 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=33.1
Q ss_pred ccCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEE
Q 016852 97 ALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLL 157 (381)
Q Consensus 97 ~~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi 157 (381)
..+.++++.+|+. ...|.+||+|.... .+.++.++.|++..+-+
T Consensus 51 ~l~~e~l~~ll~~----------------~pevliiGTG~~~~-~l~p~~~~~l~~~GI~v 94 (132)
T 2gm2_A 51 QLQPAHMDAVLAL----------------NPAVILLGTGERQQ-FPSTDVLAACLTRGIGL 94 (132)
T ss_dssp GCCTTTSHHHHHH----------------CCSEEEEECTTSCC-CCCHHHHHHHHHHTCEE
T ss_pred cCCHHHHHHHHhc----------------CCCEEEECCCCCCC-cCCHHHHHHHHHcCCEE
Confidence 4566667777766 36799999998544 89999999988877554
No 47
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=32.51 E-value=1.3e+02 Score=28.80 Aligned_cols=174 Identities=18% Similarity=0.225 Sum_probs=94.8
Q ss_pred CCCCCCCccchhhhHhhhhhhhhccccCCCCCCCCCCccccc---ccccccccccCHHH-----HHHHHHHHHHhhhhcc
Q 016852 47 SSSSSPFTEKHSFERYQRDQWVYSSLQHNRPEPTSPSVSLDA---DSTRRNDIALQLPE-----LKKLLQVLREKREEDR 118 (381)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~e-----l~~~l~~~~~~~~~~~ 118 (381)
+....||.. +-..|.++..|+-.-+.++.-+..+=-.|++- ..++ +.-.++|. +..+++++++-..++-
T Consensus 4 tp~~~~~p~-~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~--~~I~SMPGv~r~sid~l~~~~~~~~~lGi 80 (337)
T 1w5q_A 4 TPANRAYPY-TRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQR--ESIPSMPGVERLSIDQLLIEAEEWVALGI 80 (337)
T ss_dssp --CCCCTTT-CCTTTTTSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCE--EECTTSTTCEEEEHHHHHHHHHHHHHTTC
T ss_pred CccCCCCCC-CCCCcCCCChHHHHHHhcCCCCHHHceeeEEEecCCCCc--cccCCCCCceeeCHHHHHHHHHHHHHCCC
Confidence 345667753 34567777887776665555444444455532 1112 11112222 2344444444444442
Q ss_pred cCCCCCCCCEEEEEecCC-----------CCcccchHHHHHHHHhc--CEEEE-cCCCCHHHHhhhCCCceEEEeccccC
Q 016852 119 VGAEKCGPGNVYLVGTGP-----------GDPDLLTLKAMKVIQKA--DLLLY-DRLVSNDVLDLVAPNARLLYVGKTAG 184 (381)
Q Consensus 119 ~~~~~~~~g~l~lVGiGP-----------Gd~elLTlkA~~aL~~A--DvVi~-~~~~~~~ll~~l~~~~e~i~~~~~~~ 184 (381)
+.|.+.|+-| -|++.+-.+|.++|+++ |+++. +--. ..... .-++=++.-. ...
T Consensus 81 --------~~v~LFgv~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcL-c~YT~--HGHcGil~~~-g~V 148 (337)
T 1w5q_A 81 --------PALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCL-CEFTT--HGQCGILDDD-GYV 148 (337)
T ss_dssp --------CEEEEEECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECS-TTTBT--TCCSSCBCTT-SCB
T ss_pred --------CEEEEecCCCcccCCcccCccCCCCChHHHHHHHHHHHCCCeEEEEeeec-ccCCC--CCcceeeCCC-CcC
Confidence 6777777722 27888999999999998 76654 3211 00000 0111111100 001
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCC-cEEEE
Q 016852 185 YHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGI-QVKVI 238 (381)
Q Consensus 185 ~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi-~veVI 238 (381)
....+.+.+.+....+++.|-+++ .+-| ++-|+.+.+.+.|.+.|+ ++.|.
T Consensus 149 ~ND~Tl~~L~k~Als~A~AGADiV--APSd-MMDGrV~aIR~aLd~~G~~~v~Im 200 (337)
T 1w5q_A 149 LNDVSIDVLVRQALSHAEAGAQVV--APSD-MMDGRIGAIREALESAGHTNVRVM 200 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEE--EECS-CCTTHHHHHHHHHHHTTCTTCEEE
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeE--eccc-ccccHHHHHHHHHHHCCCCCceee
Confidence 112244556666777889998865 3444 677999999999999987 34444
No 48
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=32.39 E-value=1.5e+02 Score=22.35 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=48.6
Q ss_pred ccchHHHH-HHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCc
Q 016852 140 DLLTLKAM-KVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVF 218 (381)
Q Consensus 140 elLTlkA~-~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~y 218 (381)
..+|...+ +.+++-++++.|-|...+....--+++.. ....++.+.+.+ +.+++.|++.+.+.
T Consensus 5 ~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~-----------ip~~~l~~~~~~-l~~~~~ivvyc~~g---- 68 (108)
T 1gmx_A 5 ECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFH-----------LTNDTLGAFMRD-NDFDTPVMVMCYHG---- 68 (108)
T ss_dssp EEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEE-----------CCHHHHHHHHHH-SCTTSCEEEECSSS----
T ss_pred cccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEe-----------CCHHHHHHHHHh-cCCCCCEEEEcCCC----
Confidence 34565554 45666678888888655433211123322 234455555544 44667787776321
Q ss_pred CCHHHHHHHHHhCCC-cEEEEcC
Q 016852 219 GRGGEEMDFLQQKGI-QVKVIPG 240 (381)
Q Consensus 219 s~~~~l~~~l~~~gi-~veVIPG 240 (381)
.+.......|++.|+ +|.++.|
T Consensus 69 ~rs~~a~~~L~~~G~~~v~~l~G 91 (108)
T 1gmx_A 69 NSSKGAAQYLLQQGYDVVYSIDG 91 (108)
T ss_dssp SHHHHHHHHHHHHTCSSEEEETT
T ss_pred chHHHHHHHHHHcCCceEEEecC
Confidence 245566677888888 4877776
No 49
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=32.39 E-value=67 Score=29.93 Aligned_cols=67 Identities=22% Similarity=0.226 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCC-CCCc-CCHHHHHHHHHhCCCcEEEEcCchHHHH--HHHhcCCC
Q 016852 188 RTQEEIHELLLSFAEVGATVVRLKGGD-PLVF-GRGGEEMDFLQQKGIQVKVIPGITAASG--IAAELGIP 254 (381)
Q Consensus 188 ~~~eei~~~i~~~~~~Gk~VvvL~sGD-P~~y-s~~~~l~~~l~~~gi~veVIPGISS~~a--aaA~lGip 254 (381)
.+.+++.+.+....+.|-+-+.+.+|. |.+. ....++++.+++.++.+.+-+|...-.. ....+|+.
T Consensus 84 ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~~~~~~li~~i~~~~~~i~~s~g~l~~e~l~~L~~ag~~ 154 (348)
T 3iix_A 84 MTPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGAD 154 (348)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEESCCGGGTTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHhcCceEEEecCCCCHHHHHHHHHhCCC
Confidence 367889888887777776666778888 6654 4456778888887888888788654333 33334553
No 50
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=31.94 E-value=81 Score=26.32 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCC
Q 016852 191 EEIHELLLSFAEVGATVVRLKGGDPL 216 (381)
Q Consensus 191 eei~~~i~~~~~~Gk~VvvL~sGDP~ 216 (381)
+.+.+.|..+.++|.++++++.+...
T Consensus 45 pg~~e~L~~L~~~G~~l~i~Tn~~~~ 70 (176)
T 2fpr_A 45 PGVIPQLLKLQKAGYKLVMITNQDGL 70 (176)
T ss_dssp TTHHHHHHHHHHTTEEEEEEEECTTT
T ss_pred ccHHHHHHHHHHCCCEEEEEECCccc
Confidence 34556666666678899999887543
No 51
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=31.32 E-value=6.9 Score=35.54 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=28.0
Q ss_pred CCCCCcccccccccccccccCHHH-HHHHHHHHHHhhhh
Q 016852 79 PTSPSVSLDADSTRRNDIALQLPE-LKKLLQVLREKREE 116 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~e-l~~~l~~~~~~~~~ 116 (381)
||.|++|+.+..|| .++...+|+ +..+++.+.+.|..
T Consensus 145 ST~G~sP~la~~iR-~~ie~~lp~~~~~~~~~~~~~R~~ 182 (223)
T 3dfz_A 145 STDGASPLLTKRIK-EDLSSNYDESYTQYTQFLYECRVL 182 (223)
T ss_dssp ECTTSCHHHHHHHH-HHHHHHSCTHHHHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHH-HHHHHHccHHHHHHHHHHHHHHHH
Confidence 79999999999999 666655554 77777776666654
No 52
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=29.70 E-value=41 Score=29.67 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=32.6
Q ss_pred cCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchH
Q 016852 203 VGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA 243 (381)
Q Consensus 203 ~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS 243 (381)
++++|++.++|-.+.|- +.++++.|++.|++|++|-=-++
T Consensus 7 ~~k~IllgvTGs~aa~k-~~~l~~~L~~~g~~V~vv~T~~A 46 (194)
T 1p3y_1 7 KDKKLLIGICGSISSVG-ISSYLLYFKSFFKEIRVVMTKTA 46 (194)
T ss_dssp GGCEEEEEECSCGGGGG-THHHHHHHTTTSSEEEEEECHHH
T ss_pred CCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEEchhH
Confidence 47899999999888884 67899999988999999865444
No 53
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=29.18 E-value=52 Score=28.47 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHc---CCeEEEEecCCCCCcCCH-HHHHHHHHhCCCcEEEEc-C
Q 016852 189 TQEEIHELLLSFAEV---GATVVRLKGGDPLVFGRG-GEEMDFLQQKGIQVKVIP-G 240 (381)
Q Consensus 189 ~~eei~~~i~~~~~~---Gk~VvvL~sGDP~~ys~~-~~l~~~l~~~gi~veVIP-G 240 (381)
+.+++.+.+.+.... +...+.+..|+|++.... .++++.+++.|+.+.+.. |
T Consensus 51 ~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~~~~l~~l~~~~~~~~~~i~i~Tng 107 (245)
T 3c8f_A 51 TVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 107 (245)
T ss_dssp CHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CHHHHHHHHHHhhhhhcCCCCeEEEECCCcCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 456777777655432 234566778999997653 578888888888888866 5
No 54
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=29.14 E-value=41 Score=29.06 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=26.6
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCE
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADL 155 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADv 155 (381)
...+|.+||.|+-+...+..+..++|.++++
T Consensus 95 ~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~I 125 (181)
T 3s1t_A 95 HIGKVSLIGAGMRSHPGVTATFCEALAAVGV 125 (181)
T ss_dssp CEEEEEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEEecccccCchHHHHHHHHHHHCCC
Confidence 4679999999997666788999999998874
No 55
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=28.94 E-value=3.7e+02 Score=25.47 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=44.8
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCC---CC-------HHHHhhh-CCCceEEEecccc----CCCCCCHH
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRL---VS-------NDVLDLV-APNARLLYVGKTA----GYHSRTQE 191 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~---~~-------~~ll~~l-~~~~e~i~~~~~~----~~~~~~~e 191 (381)
.+|++.+ -++ ..+++++++|++||+|++... ++ +.+.+.+ ..+++++++...+ ....+...
T Consensus 157 ~~v~~~p---~~~-~~~p~~l~AI~~AD~IvlgPGS~~TSI~P~Llv~gi~~Ai~~s~A~kV~v~Nl~tq~GET~g~s~~ 232 (323)
T 2o2z_A 157 KRVFLTP---KDT-KPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVMTQNGETDGYTAS 232 (323)
T ss_dssp EEEEEES---TTC-CCCHHHHHHHHHCSEEEECSSCTTTTHHHHHTSTTHHHHHHHCCSEEEEECCSBCCTTTSTTCCHH
T ss_pred eEEEEeC---CCC-CCCHHHHHHHHhCCEEEECCCCCHHHhcccccCchHHHHHHhCCCCEEEEcCCCCCCCCCCCCCHH
Confidence 3555543 222 467899999999999987431 11 0112222 1245666543211 22334555
Q ss_pred HHHHHHHHHHHcCC-eEEEEecCCC
Q 016852 192 EIHELLLSFAEVGA-TVVRLKGGDP 215 (381)
Q Consensus 192 ei~~~i~~~~~~Gk-~VvvL~sGDP 215 (381)
+-++.+.+++..+. +.+++-.+++
T Consensus 233 dhv~ai~~~~~~~~iD~vlv~~~~~ 257 (323)
T 2o2z_A 233 DHLQAIMDHCGVGIVDDILVHGEPI 257 (323)
T ss_dssp HHHHHHHHHHCSSSCSEEEEECSCC
T ss_pred HHHHHHHHhcCCCCCcEEEECCCcC
Confidence 66666666654332 5566655553
No 56
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=28.39 E-value=1.8e+02 Score=23.45 Aligned_cols=93 Identities=10% Similarity=0.028 Sum_probs=47.1
Q ss_pred cchHHHH-HHHHh-cCEEEEcCCCCHHHHh--hhC-----CCceEEEeccccCCCCCCHHHHHHHHHHH-----HHcCCe
Q 016852 141 LLTLKAM-KVIQK-ADLLLYDRLVSNDVLD--LVA-----PNARLLYVGKTAGYHSRTQEEIHELLLSF-----AEVGAT 206 (381)
Q Consensus 141 lLTlkA~-~aL~~-ADvVi~~~~~~~~ll~--~l~-----~~~e~i~~~~~~~~~~~~~eei~~~i~~~-----~~~Gk~ 206 (381)
.+|..-+ +.|++ .++++.|-|...+... .+. +++..+.+.. . ......+..+.+.+. +.+++.
T Consensus 6 ~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~-~--~~~~~~~~~~~l~~~l~~~~~~~~~~ 82 (148)
T 2fsx_A 6 DITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWAT-S--DGTHNDNFLAELRDRIPADADQHERP 82 (148)
T ss_dssp EECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBC-T--TSCBCTTHHHHHHHHCC-------CC
T ss_pred cCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeec-c--ccccCHHHHHHHHHHHhhccCCCCCE
Confidence 3554444 55664 5888998887665543 331 4454443322 0 000001122233222 145677
Q ss_pred EEEEecCCCCCcCCHHHHHHHHHhCCC-cEEEEcC
Q 016852 207 VVRLKGGDPLVFGRGGEEMDFLQQKGI-QVKVIPG 240 (381)
Q Consensus 207 VvvL~sGDP~~ys~~~~l~~~l~~~gi-~veVIPG 240 (381)
|++.+.+. .+.......|+..|+ +|.++.|
T Consensus 83 ivvyC~~G----~rS~~aa~~L~~~G~~~v~~l~G 113 (148)
T 2fsx_A 83 VIFLCRSG----NRSIGAAEVATEAGITPAYNVLD 113 (148)
T ss_dssp EEEECSSS----STHHHHHHHHHHTTCCSEEEETT
T ss_pred EEEEcCCC----hhHHHHHHHHHHcCCcceEEEcC
Confidence 87776331 245566778888898 5888876
No 57
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=27.62 E-value=29 Score=28.94 Aligned_cols=85 Identities=13% Similarity=0.290 Sum_probs=0.0
Q ss_pred CCccchhhhHhhhhhhhhccccCCCCC--CCCCCcccccccccccccccCHHHHHHHHHHHHHhhhhcccCCCCCCC--C
Q 016852 52 PFTEKHSFERYQRDQWVYSSLQHNRPE--PTSPSVSLDADSTRRNDIALQLPELKKLLQVLREKREEDRVGAEKCGP--G 127 (381)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~--g 127 (381)
.|.....|+-|.-+....++.....+. ..++..+-..+..- ..+.++++.++.. . .
T Consensus 9 ~~~~~~~I~~y~~g~f~ing~~~~gsilv~p~~~~~W~~~~~~----~l~~e~l~~l~~~----------------~p~p 68 (135)
T 2fvt_A 9 HFPRTAAIDAYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPE----QIDRYSLQRVFDN----------------ANAI 68 (135)
T ss_dssp CCCSCCCCCCEETTEEECSSSEECSEEEECSSCEEEESCCSTT----CCCTTTTHHHHHT----------------TTSC
T ss_pred cCCCCceEEEEcCCEEEECCEEEEeCEEEeCCCccccCCCCcc----cCCHHHHHHHHhc----------------CCCC
Q ss_pred EEEEEecCCCCcccchHHHHHHHHhcCEEE
Q 016852 128 NVYLVGTGPGDPDLLTLKAMKVIQKADLLL 157 (381)
Q Consensus 128 ~l~lVGiGPGd~elLTlkA~~aL~~ADvVi 157 (381)
.|.|||+|. ....+.++.++.|++..+-+
T Consensus 69 evliiGTG~-~~~~l~p~l~~~l~~~GI~v 97 (135)
T 2fvt_A 69 DTLIVGTGA-DVWIAPRQLREALRGVNVVL 97 (135)
T ss_dssp SEEEEECTT-SCCCCCHHHHHHHHTTTCEE
T ss_pred CEEEEcCCC-CCCcCCHHHHHHHHHcCCEE
No 58
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=27.61 E-value=36 Score=30.23 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=27.3
Q ss_pred CCCEEEEEecCCCCcccchHHHHHHHHhcCE
Q 016852 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADL 155 (381)
Q Consensus 125 ~~g~l~lVGiGPGd~elLTlkA~~aL~~ADv 155 (381)
...+|.+||.|+-+.-.+.-+..++|.++++
T Consensus 114 ~iakVSvVG~GM~~~~GVaak~F~aLa~~~I 144 (200)
T 4go7_X 114 HIGKVSLIGAGMRSHPGVTATFCEALAAVGV 144 (200)
T ss_dssp CEEEEEEEEESCTTCHHHHHHHHHHHHHTTC
T ss_pred CeeeeeeeccccccCCCcHHHHHHHHHHCCC
Confidence 3579999999998888899999999988764
No 59
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=27.22 E-value=56 Score=28.41 Aligned_cols=37 Identities=11% Similarity=-0.040 Sum_probs=30.8
Q ss_pred CeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCch
Q 016852 205 ATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGIT 242 (381)
Q Consensus 205 k~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGIS 242 (381)
++|++.++|-.+.| -+.++++.|++.|++|++|---+
T Consensus 3 k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~ 39 (181)
T 1g63_A 3 GKLLICATASINVI-NINHYIVELKQHFDEVNILFSPS 39 (181)
T ss_dssp CCEEEEECSCGGGG-GHHHHHHHHTTTSSCEEEEECGG
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEchh
Confidence 57888899988888 57899999998899999985444
No 60
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=27.13 E-value=2.7e+02 Score=26.70 Aligned_cols=122 Identities=20% Similarity=0.252 Sum_probs=73.3
Q ss_pred cCHHHHHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCC------------CcccchHHHHHHHHhc--CEEEE-cCCC
Q 016852 98 LQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPG------------DPDLLTLKAMKVIQKA--DLLLY-DRLV 162 (381)
Q Consensus 98 ~~~~el~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPG------------d~elLTlkA~~aL~~A--DvVi~-~~~~ 162 (381)
.++..+.+.++. -..++ -+.|.+.|+-|. |++.+-.+|.++|+++ |+++. +--
T Consensus 66 ~sid~l~~~~~~---~~~lG--------i~~v~LFgv~~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~VitDvc- 133 (342)
T 1h7n_A 66 IGVNRLKDYLKP---LVAKG--------LRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVC- 133 (342)
T ss_dssp ECHHHHHHHHHH---HHHTT--------CCEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEEC-
T ss_pred eCHHHHHHHHHH---HHHCC--------CCEEEEecccCccCCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeee-
Confidence 355455444444 34444 377888888553 7889999999999987 76654 321
Q ss_pred CHHHHhhhC--CCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCC--cEEEE
Q 016852 163 SNDVLDLVA--PNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGI--QVKVI 238 (381)
Q Consensus 163 ~~~ll~~l~--~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi--~veVI 238 (381)
+.-+- -++=++.-. .......+.+.+.+....+++.|-+++- +-| ++-|+.+.+.+.|.+.|+ ++.|.
T Consensus 134 ----Lc~YT~HGHcGil~~~-g~V~ND~Tl~~Lak~Als~A~AGAdiVA--PSd-MMDGrV~aIR~aLd~~G~~~~v~Im 205 (342)
T 1h7n_A 134 ----LCEYTSHGHCGVLYDD-GTINRERSVSRLAAVAVNYAKAGAHCVA--PSD-MIDGRIRDIKRGLINANLAHKTFVL 205 (342)
T ss_dssp ----STTTBTTCCSSCBCTT-SSBCHHHHHHHHHHHHHHHHHHTCSEEE--ECC-CCTTHHHHHHHHHHHTTCTTTCEEE
T ss_pred ----cccccCCCceeEECCC-CcCccHHHHHHHHHHHHHHHHcCCCeee--ccc-ccccHHHHHHHHHHHCCCccCceEe
Confidence 11111 111111000 0011222445566667778889988653 333 677999999999999988 56665
Q ss_pred c
Q 016852 239 P 239 (381)
Q Consensus 239 P 239 (381)
.
T Consensus 206 s 206 (342)
T 1h7n_A 206 S 206 (342)
T ss_dssp E
T ss_pred e
Confidence 4
No 61
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=26.78 E-value=1.8e+02 Score=28.57 Aligned_cols=109 Identities=14% Similarity=0.196 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhhhccc--CCC-CCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEe
Q 016852 103 LKKLLQVLREKREEDRV--GAE-KCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYV 179 (381)
Q Consensus 103 l~~~l~~~~~~~~~~~~--~~~-~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~ 179 (381)
++.+++.+++.++.... .+. ...-.+|-++| |-|+ +++ ..| .=..||+++.........++....+.-++..
T Consensus 281 l~~f~~~vk~~L~~~~vr~~g~~~~~I~rVAvc~-GSG~-~~i-~~A--~~~gaDvyITGD~~~H~a~dA~e~Gi~vId~ 355 (397)
T 2gx8_A 281 LGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLG-GDGN-KYI-NQA--KFKGADVYVTGDMYYHVAHDAMMLGLNIVDP 355 (397)
T ss_dssp HHHHHHHHHHHTTCSCCEEESCTTSEEEEEEEEE-EECG-GGH-HHH--HHTTCSEEEEECCCHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHHHHcCCCceEEECCCCCceeEEEEEc-CCcH-HHH-HHH--HHCCCCEEEecCCcHHHHHHHHHCCCcEEEc
Confidence 45555555556664321 111 11124555554 3232 333 223 2247999997554433445554434566666
Q ss_pred ccccCCCCCCHHHHHHHHHHHH-HcCCeEEEEec---CCCCCc
Q 016852 180 GKTAGYHSRTQEEIHELLLSFA-EVGATVVRLKG---GDPLVF 218 (381)
Q Consensus 180 ~~~~~~~~~~~eei~~~i~~~~-~~Gk~VvvL~s---GDP~~y 218 (381)
+..... .-.+.+.+.|.+.. ..+..|-+..+ .||+-|
T Consensus 356 GH~~sE--~~~~~l~~~L~~~~~~~~~~v~v~~s~~~~dP~~~ 396 (397)
T 2gx8_A 356 GHNVEK--VMKQGVQKQLQEKVDAKKLNVHIHASQLHTDPFIF 396 (397)
T ss_dssp CGGGGG--HHHHHHHHHHHHHHHHTTCCCEEEECCCCCCCCCC
T ss_pred CchHHH--HHHHHHHHHHHHHhccCCCceEEEEEecCCCCceE
Confidence 543211 12234445554444 22333444443 788754
No 62
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=26.52 E-value=49 Score=27.88 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=26.7
Q ss_pred cCCeEEEEecCCCCCcCCHHHHHHHHHhC-CCcEEEEc
Q 016852 203 VGATVVRLKGGDPLVFGRGGEEMDFLQQK-GIQVKVIP 239 (381)
Q Consensus 203 ~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~-gi~veVIP 239 (381)
..-+.++|++|| +-...+++.++++ |.+|.++.
T Consensus 107 ~~~d~~vLvSgD----~DF~plv~~lr~~~G~~V~v~g 140 (165)
T 2qip_A 107 PDVDRVILVSGD----GDFSLLVERIQQRYNKKVTVYG 140 (165)
T ss_dssp GGCSEEEEECCC----GGGHHHHHHHHHHHCCEEEEEE
T ss_pred ccCCEEEEEECC----hhHHHHHHHHHHHcCcEEEEEe
Confidence 345889999999 5567888999996 99998874
No 63
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=26.28 E-value=4.1e+02 Score=24.96 Aligned_cols=124 Identities=6% Similarity=-0.020 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCCEEEEEecCCCCcccchHHHHHHHHhc--CEEEEcC-CCC-HHHHhhhCCCceEEE
Q 016852 103 LKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKA--DLLLYDR-LVS-NDVLDLVAPNARLLY 178 (381)
Q Consensus 103 l~~~l~~~~~~~~~~~~~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~A--DvVi~~~-~~~-~~ll~~l~~~~e~i~ 178 (381)
..++++.++++.... ..++.-+.+.|..-|+.+.+-....+.+++. ++-+.+- ... ..+.+.+. +...+.
T Consensus 239 ~~~~l~~~~~~~~~~-----~~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~-~~D~ii 312 (414)
T 2q9u_A 239 MGLAIAEYDRWSKGQ-----HCQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTY-DSGAVA 312 (414)
T ss_dssp HHHHHHHHHHHHTTC-----CCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHH-TCSEEE
T ss_pred HHHHHHHHHHHhcCc-----ccCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHH-hCCEEE
Confidence 455555554444221 0223444555777788777777777777654 3444432 111 12222332 344454
Q ss_pred eccccCCCCCCHHHHHHHHHHHH---H-cCCeEEEEecCCCCCcCCHHHHHHHHHh-CCCc
Q 016852 179 VGKTAGYHSRTQEEIHELLLSFA---E-VGATVVRLKGGDPLVFGRGGEEMDFLQQ-KGIQ 234 (381)
Q Consensus 179 ~~~~~~~~~~~~eei~~~i~~~~---~-~Gk~VvvL~sGDP~~ys~~~~l~~~l~~-~gi~ 234 (381)
++.+.-..... ..+.+.+.... . +||.++++.+|+-. -+....+...|.. .|..
T Consensus 313 igsP~y~~~~~-~~~k~fld~l~~~~~~~~K~~~~~~t~g~~-~~a~~~l~~~l~~~~g~~ 371 (414)
T 2q9u_A 313 FASPTLNNTMM-PSVAAALNYVRGLTLIKGKPAFAFGAFGWS-NRAVPDIVAELRDGCKAD 371 (414)
T ss_dssp EECCCBTTBCC-HHHHHHHHHHHHHTTTTTSBEEEEEEESSS-CCHHHHHHHHHHHTSCCB
T ss_pred EEcCccCcCch-HHHHHHHHHHHhhcccCCCEEEEEEecCCC-chhHHHHHHHHHhhcCcE
Confidence 44332222222 22333333322 2 68999888755432 2222334445555 5443
No 64
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=26.18 E-value=2.4e+02 Score=28.04 Aligned_cols=109 Identities=8% Similarity=0.043 Sum_probs=59.4
Q ss_pred CEEEEEecCCCCcccchHHHHHHHHh----cCEEEEcCCCCHHHHhhhC-CCceEEEecc--ccCCCCCCHHHHHHHHHH
Q 016852 127 GNVYLVGTGPGDPDLLTLKAMKVIQK----ADLLLYDRLVSNDVLDLVA-PNARLLYVGK--TAGYHSRTQEEIHELLLS 199 (381)
Q Consensus 127 g~l~lVGiGPGd~elLTlkA~~aL~~----ADvVi~~~~~~~~ll~~l~-~~~e~i~~~~--~~~~~~~~~eei~~~i~~ 199 (381)
...++|+.+-|.... -++.+.+. .|.|++++..+..+...+. -+...+++.. .......+.+.+.+.|.+
T Consensus 117 ~~~~lV~GaT~~~~a---~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~ 193 (450)
T 3bc8_A 117 ASCFVVPMATGMSLT---LCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQE 193 (450)
T ss_dssp CEEEEESSCHHHHHH---HHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHH
T ss_pred ceEEEECCHHHHHHH---HHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHh
Confidence 456777655433333 44444444 7899988777775543331 1333233221 112234567777666655
Q ss_pred HHHcCCeEEEEecCCCC--CcCCHHHHHHHHHhCCCcEEEE
Q 016852 200 FAEVGATVVRLKGGDPL--VFGRGGEEMDFLQQKGIQVKVI 238 (381)
Q Consensus 200 ~~~~Gk~VvvL~sGDP~--~ys~~~~l~~~l~~~gi~veVI 238 (381)
...+.+-+++..+|.-+ ..+....+.+.+++.|+.+.|=
T Consensus 194 ~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD 234 (450)
T 3bc8_A 194 LGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVN 234 (450)
T ss_dssp HCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEE
T ss_pred cCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEE
Confidence 42122223333344433 5566778888999989888765
No 65
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=25.84 E-value=66 Score=27.83 Aligned_cols=39 Identities=21% Similarity=0.085 Sum_probs=31.8
Q ss_pred CCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEcCchH
Q 016852 204 GATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA 243 (381)
Q Consensus 204 Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS 243 (381)
+|+|++.++|-.+.|- +.++++.|++.|++|+++---++
T Consensus 5 ~k~IllgvTGs~aa~k-~~~ll~~L~~~g~~V~vv~T~~A 43 (175)
T 3qjg_A 5 GENVLICLCGSVNSIN-ISHYIIELKSKFDEVNVIASTNG 43 (175)
T ss_dssp CCEEEEEECSSGGGGG-HHHHHHHHTTTCSEEEEEECTGG
T ss_pred CCEEEEEEeCHHHHHH-HHHHHHHHHHCCCEEEEEECcCH
Confidence 4789999999888884 77899999999999998865444
No 66
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=25.80 E-value=2.6e+02 Score=22.50 Aligned_cols=114 Identities=15% Similarity=0.136 Sum_probs=57.8
Q ss_pred EEEecCCCCcccchHHHHHH-HHhc--CEEE-EcCCCCHHHHhhhC-CCceEEEeccccCCCCCCHHHHHHHHHHHHHcC
Q 016852 130 YLVGTGPGDPDLLTLKAMKV-IQKA--DLLL-YDRLVSNDVLDLVA-PNARLLYVGKTAGYHSRTQEEIHELLLSFAEVG 204 (381)
Q Consensus 130 ~lVGiGPGd~elLTlkA~~a-L~~A--DvVi-~~~~~~~~ll~~l~-~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~G 204 (381)
.++|+-+|+...+-..-... ++.+ +++. +.....+.+.+.+. .+..++-+..... ...+.+.+.+..+.++|
T Consensus 6 vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~---~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 6 IVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYG---QGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp EEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSS---THHHHHTTHHHHHHHTT
T ss_pred EEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCc---CcHHHHHHHHHHHHhcC
Confidence 45566667776666654433 3333 6774 44333344555443 2444444332111 12223333333333344
Q ss_pred C-eEEEEecCCCCCcC-CHHHHHHHHHhCCCcEEEEcCchHHHH
Q 016852 205 A-TVVRLKGGDPLVFG-RGGEEMDFLQQKGIQVKVIPGITAASG 246 (381)
Q Consensus 205 k-~VvvL~sGDP~~ys-~~~~l~~~l~~~gi~veVIPGISS~~a 246 (381)
. ++-+++.|-|.+-. ...+..+.+++.|++--.-||-+....
T Consensus 83 ~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~ 126 (137)
T 1ccw_A 83 LEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVG 126 (137)
T ss_dssp CTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHH
T ss_pred CCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHH
Confidence 3 57777888765422 223334567777888777777655443
No 67
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=25.29 E-value=1.3e+02 Score=27.96 Aligned_cols=35 Identities=14% Similarity=0.437 Sum_probs=27.9
Q ss_pred EEEe-cCCCCCcCCHHHHHHHHHhCCCcEEEEcCch
Q 016852 208 VRLK-GGDPLVFGRGGEEMDFLQQKGIQVKVIPGIT 242 (381)
Q Consensus 208 vvL~-sGDP~~ys~~~~l~~~l~~~gi~veVIPGIS 242 (381)
+.+. .|+|+++....++++.+++.|+.+.+....+
T Consensus 145 v~~sggGEPll~~~l~~ll~~~~~~g~~i~l~TNG~ 180 (342)
T 2yx0_A 145 AAISLSGEPMLYPYMGDLVEEFHKRGFTTFIVTNGT 180 (342)
T ss_dssp EEECSSSCGGGSTTHHHHHHHHHHTTCEEEEEECSC
T ss_pred EEEcCCCcccchhhHHHHHHHHHHCCCcEEEEcCCC
Confidence 4454 9999999878888999998898888875444
No 68
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=25.02 E-value=48 Score=27.91 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=27.4
Q ss_pred CCCCEEEEEecCCCCcccchHHHHHHHHhcCEEE
Q 016852 124 CGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLL 157 (381)
Q Consensus 124 ~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi 157 (381)
....+|.+||.|+-+...+.-+..++|.++++=+
T Consensus 93 ~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI 126 (167)
T 2dt9_A 93 PDIAKVSIVGVGLASTPEVPAKMFQAVASTGANI 126 (167)
T ss_dssp CSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCE
Confidence 3457899999999877678889999999876533
No 69
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=24.46 E-value=96 Score=25.63 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHH-----cCCeEEEEe-cCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHH
Q 016852 189 TQEEIHELLLSFAE-----VGATVVRLK-GGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGI 247 (381)
Q Consensus 189 ~~eei~~~i~~~~~-----~Gk~VvvL~-sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aa 247 (381)
..+++.+.+.++++ .|+-|.+|+ -|-|.-++ ..+... .+.++++|.|++---++
T Consensus 43 ~~~~~~~~i~~~i~~~~~d~g~GVLiL~DmGSp~n~a--~~l~~~---~~~~v~vI~gvnlpmll 102 (139)
T 3gdw_A 43 EVQTMYEQLRNQVITQKESLNNGILLLTDMGSLNSFG--NMLFEE---TGIRTKAITMTSTMIVL 102 (139)
T ss_dssp CHHHHHHHHHHHHHTSTGGGTTCEEEEECSGGGGGHH--HHHHHH---HCCCEEEECSCCHHHHH
T ss_pred CHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCHHHHH--HHHHHh---hCCCEEEEeCCCHHHHH
Confidence 45666666666654 366787776 77774432 222222 26789999999986555
No 70
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=24.24 E-value=2.4e+02 Score=25.73 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=32.7
Q ss_pred HhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHc---CCeEEEEec-CCCCC
Q 016852 151 QKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEV---GATVVRLKG-GDPLV 217 (381)
Q Consensus 151 ~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~---Gk~VvvL~s-GDP~~ 217 (381)
..||+++..........+....+.-++..+.. ... .-.+.+.+.|.+...+ +-.|.+... .||+-
T Consensus 197 ~gaD~~ITGd~~~h~~~~A~e~gi~~i~~GH~-tE~-~~~~~l~~~L~~~~~~~~~~v~v~~~~~~~~P~~ 265 (267)
T 2fyw_A 197 KGADVYITGDIYYHTAQDMLSDGLLALDPGHY-IEV-IFVEKIAALLSQWKEDKGWSIDILPSQASTNPFH 265 (267)
T ss_dssp TTCSEEEESCCCHHHHHHHHHTTCEEEECCGG-GGG-HHHHHHHHHHHHHHHHHTCCCEEEECCCCCCCEE
T ss_pred cCCCEEEEccCcHHHHHHHHHCCCeEEECCcH-HHH-HHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCce
Confidence 47999998655444445554445566665532 111 1112334444443321 345555555 77764
No 71
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=23.48 E-value=1.1e+02 Score=24.91 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHH---cCCeEEEEe-cCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHH
Q 016852 189 TQEEIHELLLSFAE---VGATVVRLK-GGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIA 248 (381)
Q Consensus 189 ~~eei~~~i~~~~~---~Gk~VvvL~-sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaa 248 (381)
..+++.+.+.+..+ .|+-|.+|+ -|-|.-+ +..+... .+.++++|.|++---++-
T Consensus 43 ~~~~~~~~i~~~i~~~d~~~GVLiL~DmGSp~n~--a~~l~~~---~~~~v~vI~gvnlpmlle 101 (130)
T 3gx1_A 43 EVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSF--GNILTEE---LGIRTKTVTMVSTPVVLE 101 (130)
T ss_dssp CHHHHHHHHHHHHHTSCCTTCEEEEECSGGGGTH--HHHHHHH---HCCCEEEECSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHH--HHHHHHh---cCCCEEEEeCCCHHHHHH
Confidence 45666666666664 466787777 7777443 2222222 256899999999865553
No 72
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=23.34 E-value=95 Score=32.76 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=54.1
Q ss_pred HHHHHHhcCEEEEcCCC-CHHHHhhhCC-----CceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCc-
Q 016852 146 AMKVIQKADLLLYDRLV-SNDVLDLVAP-----NARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVF- 218 (381)
Q Consensus 146 A~~aL~~ADvVi~~~~~-~~~ll~~l~~-----~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~y- 218 (381)
...+|++.|+++...+. -+.+++.+.. +...+.+.. +.-.....+.+.|.+.++.|.+|-+++.+-+.+.
T Consensus 331 if~~i~~~D~ll~~P~~sf~~v~~~I~~A~~dp~v~~I~it~---Y~~~~d~~I~~AL~~AA~rGV~VrVLvd~~a~~~~ 407 (687)
T 1xdp_A 331 GFDAIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINI---YRVAKDSRIIDSMIHAAHNGKKVTVVVELQARFDE 407 (687)
T ss_dssp HHHHHHHSCEEEEETTBCTHHHHHHHHHHHHCTTEEEEEEEE---SSCCTTCHHHHHHHHHHHTTCEEEEEECTTCSSTT
T ss_pred hhHHHhcCCEEEECchhhhhhHHHHHHHHhhCCcceEEEEEe---eeecCcHHHHHHHHHHHhcCCEEEEEECCCcccch
Confidence 57899999999985543 3345555532 222343321 1111225788999999999999999997766332
Q ss_pred CCHHHHHHHHHhCCCcEE
Q 016852 219 GRGGEEMDFLQQKGIQVK 236 (381)
Q Consensus 219 s~~~~l~~~l~~~gi~ve 236 (381)
.......+.|.+.|++|.
T Consensus 408 ~~n~~~~~~L~~aGV~V~ 425 (687)
T 1xdp_A 408 EANIHWAKRLTEAGVHVI 425 (687)
T ss_dssp TTTTTTTHHHHHHTCEEE
T ss_pred hhHHHHHHHHHHCCCEEE
Confidence 112234566777776653
No 73
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=23.25 E-value=1.5e+02 Score=23.89 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=57.1
Q ss_pred CCEEEEEecCCCCcccchHHHHHHHHhcC--EEEEcCCCCHHHH--------hhhCCCceEEEeccccCCCCCCHHHHHH
Q 016852 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKAD--LLLYDRLVSNDVL--------DLVAPNARLLYVGKTAGYHSRTQEEIHE 195 (381)
Q Consensus 126 ~g~l~lVGiGPGd~elLTlkA~~aL~~AD--vVi~~~~~~~~ll--------~~l~~~~e~i~~~~~~~~~~~~~eei~~ 195 (381)
+..|-+||..+ +++-..-+..+.|.+.. ++.......+ +. .-++. .++..+- ...+...+
T Consensus 4 p~siAVVGaS~-~~~~~g~~v~~~L~~~g~~V~pVnP~~~~-i~G~~~y~sl~dlp~-vDlavi~-------~p~~~v~~ 73 (122)
T 3ff4_A 4 MKKTLILGATP-ETNRYAYLAAERLKSHGHEFIPVGRKKGE-VLGKTIINERPVIEG-VDTVTLY-------INPQNQLS 73 (122)
T ss_dssp CCCEEEETCCS-CTTSHHHHHHHHHHHHTCCEEEESSSCSE-ETTEECBCSCCCCTT-CCEEEEC-------SCHHHHGG
T ss_pred CCEEEEEccCC-CCCCHHHHHHHHHHHCCCeEEEECCCCCc-CCCeeccCChHHCCC-CCEEEEE-------eCHHHHHH
Confidence 57899999885 66667777777777664 3333332211 11 11111 2222221 24556666
Q ss_pred HHHHHHHcCCeEEEEecCCCCCcCCHHHHHHHHHhCCCcEEEEc
Q 016852 196 LLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIP 239 (381)
Q Consensus 196 ~i~~~~~~Gk~VvvL~sGDP~~ys~~~~l~~~l~~~gi~veVIP 239 (381)
.+.+..+.|-+.+++.+| +. ..++.+.+++.|++ +++
T Consensus 74 ~v~e~~~~g~k~v~~~~G---~~--~~e~~~~a~~~Gir--vv~ 110 (122)
T 3ff4_A 74 EYNYILSLKPKRVIFNPG---TE--NEELEEILSENGIE--PVI 110 (122)
T ss_dssp GHHHHHHHCCSEEEECTT---CC--CHHHHHHHHHTTCE--EEE
T ss_pred HHHHHHhcCCCEEEECCC---CC--hHHHHHHHHHcCCe--EEC
Confidence 777777778777777776 33 35788888888654 563
No 74
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=22.41 E-value=3.9e+02 Score=25.79 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhhhccc--CCCCCCCCEEEEEecCCCCcccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEec
Q 016852 103 LKKLLQVLREKREEDRV--GAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVG 180 (381)
Q Consensus 103 l~~~l~~~~~~~~~~~~--~~~~~~~g~l~lVGiGPGd~elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~ 180 (381)
++.+++.+++.++.... .+.. ..+|.=|++-.|+-..+-..|. =..||+++.........++....+.-++..+
T Consensus 254 l~~~~~~vk~~l~~~~vr~~g~~--~~~I~~VAvc~GsG~~~i~~a~--~~gaDvyITGD~~~H~~~~A~~~gi~vid~G 329 (370)
T 2nyd_A 254 LEDFAADIKSKLNIPSVRFVGES--NQKIKRIAIIGGSGIGYEYQAV--QQGADVFVTGDIKHHDALDAKIHGVNLIDIN 329 (370)
T ss_dssp HHHHHHHHHHHTTCSCCEEESCT--TCEEEEEEECCSCCTTSHHHHH--HTTCSEEEESCCCHHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHHHcCCCceEEecCC--CCcccEEEEEcCCCHHHHHHHH--HcCCCEEEeCCccHHHHHHHHHCCCcEEEcC
Confidence 44455555556664322 1111 1234444443343333322332 2479999986554444555554455666666
Q ss_pred cccCCCCCCHHHHHHHHHHHHH-cCC--eEEEEec-CCCCCc
Q 016852 181 KTAGYHSRTQEEIHELLLSFAE-VGA--TVVRLKG-GDPLVF 218 (381)
Q Consensus 181 ~~~~~~~~~~eei~~~i~~~~~-~Gk--~VvvL~s-GDP~~y 218 (381)
..... .-.+.+.+.|.+... .+. .|.+... .||+-|
T Consensus 330 H~~tE--~~~~~l~~~L~~~~~~~~~~v~v~~s~~~~dP~~~ 369 (370)
T 2nyd_A 330 HYSEY--VMKEGLKTLLMNWFNIEKINIDVEASTINTDPFQY 369 (370)
T ss_dssp GGGGG--GHHHHHHHHHHHHHHHTTCCCCEEECCCCCCSCEE
T ss_pred chHHH--HHHHHHHHHHHHHhcccCCceEEEEEecCCCCceE
Confidence 43222 223344555555442 222 3333333 677643
No 75
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=21.95 E-value=77 Score=25.18 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=52.5
Q ss_pred ccchHHHHHHHHhcCEEEEcCCCCHHHHhhhCCCceEEEeccccCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCCCcC
Q 016852 140 DLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFG 219 (381)
Q Consensus 140 elLTlkA~~aL~~ADvVi~~~~~~~~ll~~l~~~~e~i~~~~~~~~~~~~~eei~~~i~~~~~~Gk~VvvL~sGDP~~ys 219 (381)
..+|...+..+-+.++++.|-|...++...--+++..+.+............+..+.+...+..++.|++.+.+. .
T Consensus 18 ~~is~~e~~~~l~~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~G----~ 93 (129)
T 1tq1_A 18 SSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSG----G 93 (129)
T ss_dssp EEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSC----S
T ss_pred cccCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCCC----c
Confidence 446655554443357788887765544332223444333210000000000122222322334567788777431 2
Q ss_pred CHHHHHHHHHhCCCc-EEEEcC-chHHHHHHHhcCCCCc
Q 016852 220 RGGEEMDFLQQKGIQ-VKVIPG-ITAASGIAAELGIPLT 256 (381)
Q Consensus 220 ~~~~l~~~l~~~gi~-veVIPG-ISS~~aaaA~lGipl~ 256 (381)
+.......|++.|++ |.++.| +..- ...|.|++
T Consensus 94 rs~~aa~~L~~~G~~~v~~l~GG~~~W----~~~g~p~~ 128 (129)
T 1tq1_A 94 RSIKATTDLLHAGFTGVKDIVGGYSAW----AKNGLPTK 128 (129)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCHHHH----HHHTCCCC
T ss_pred HHHHHHHHHHHcCCCCeEEeCCcHHHH----HhCCCCCC
Confidence 455666677777884 777765 4332 23477654
No 76
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=21.62 E-value=1.5e+02 Score=28.85 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHH-cCCeEEEEecCCCCCcCC--HHHHHHHHHhC-CC-cEEE
Q 016852 188 RTQEEIHELLLSFAE-VGATVVRLKGGDPLVFGR--GGEEMDFLQQK-GI-QVKV 237 (381)
Q Consensus 188 ~~~eei~~~i~~~~~-~Gk~VvvL~sGDP~~ys~--~~~l~~~l~~~-gi-~veV 237 (381)
...+++.+.+....+ .|-+-+++++|||++... ..++++.+++. ++ .+.+
T Consensus 145 ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d~~L~~il~~l~~~~~v~~i~i 199 (416)
T 2a5h_A 145 MPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRI 199 (416)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCHHHHHHHHHHHHTSTTCCEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCHHHHHHHHHHHHhcCCccEEEE
Confidence 355666555443333 344567889999999886 67788888875 33 3444
No 77
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=20.57 E-value=1.7e+02 Score=26.64 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=33.0
Q ss_pred EEEe-cCCCCCcCCHHHHHHHHHhCCCcEEEEcCchHHHHHHHhcCC
Q 016852 208 VRLK-GGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGI 253 (381)
Q Consensus 208 vvL~-sGDP~~ys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGi 253 (381)
+.+. .|+|+++....++++.+++.|+.+.+...-+-. -.+..+|.
T Consensus 131 i~~s~gGEPll~~~l~~li~~~~~~g~~~~l~TNG~~~-~~l~~L~~ 176 (311)
T 2z2u_A 131 VAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNGILT-DVIEKIEP 176 (311)
T ss_dssp EEECSSSCGGGSTTHHHHHHHHHHTTCEEEEEECSCCH-HHHHHCCC
T ss_pred EEEeCCcCccchhhHHHHHHHHHHCCCcEEEECCCCCH-HHHHhCCC
Confidence 4455 899999988888999999989988887754433 33445543
No 78
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=20.33 E-value=68 Score=29.75 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=37.8
Q ss_pred cCCeEEEEecCCCCCcCCHHHHHHHHHh--CCCcEEEEcCchHHHHHHHhcCCCCc
Q 016852 203 VGATVVRLKGGDPLVFGRGGEEMDFLQQ--KGIQVKVIPGITAASGIAAELGIPLT 256 (381)
Q Consensus 203 ~Gk~VvvL~sGDP~~ys~~~~l~~~l~~--~gi~veVIPGISS~~aaaA~lGipl~ 256 (381)
++-+++++..|| |+..+++..+.. .++++=+||.- +.+.++..+|+|.+
T Consensus 62 ~~~d~vv~~GGD----GTl~~v~~~l~~~~~~~~l~iiP~G-t~N~~ar~lg~~~~ 112 (304)
T 3s40_A 62 SKVDLIIVFGGD----GTVFECTNGLAPLEIRPTLAIIPGG-TCNDFSRTLGVPQN 112 (304)
T ss_dssp TTCSEEEEEECH----HHHHHHHHHHTTCSSCCEEEEEECS-SCCHHHHHTTCCSS
T ss_pred cCCCEEEEEccc----hHHHHHHHHHhhCCCCCcEEEecCC-cHHHHHHHcCCCcc
Confidence 466889999999 777788888776 57899999974 45666667888743
No 79
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=20.31 E-value=1.2e+02 Score=28.78 Aligned_cols=43 Identities=26% Similarity=0.391 Sum_probs=32.2
Q ss_pred HcCCeEEEEecCCC--------CC----c--C-CHHHHHHHHHhCCCcEEEEcCchHH
Q 016852 202 EVGATVVRLKGGDP--------LV----F--G-RGGEEMDFLQQKGIQVKVIPGITAA 244 (381)
Q Consensus 202 ~~Gk~VvvL~sGDP--------~~----y--s-~~~~l~~~l~~~gi~veVIPGISS~ 244 (381)
.+|++++++++|=. -= + | +|..+.+++..+|.+|.++-|..++
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~sl 91 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSA 91 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTSC
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCCc
Confidence 48999788887733 11 1 3 5667888999999999999998764
No 80
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=20.31 E-value=80 Score=22.32 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCCCC-cCCHHHHHHHHHhCCC
Q 016852 189 TQEEIHELLLSFAEVGATVVRLKGGDPLV-FGRGGEEMDFLQQKGI 233 (381)
Q Consensus 189 ~~eei~~~i~~~~~~Gk~VvvL~sGDP~~-ys~~~~l~~~l~~~gi 233 (381)
..+++...+........+..++..+|... |+....++..+++.|+
T Consensus 28 ~~~~L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~l~~aG~ 73 (74)
T 2jwk_A 28 TEEMVTQLSRQEFDKDNNTLFLVGGAKEVPYEEVIKALNLLHLAGI 73 (74)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEEEEECTTSCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 45677777766655544444555566654 7777888889888876
Done!