RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016852
(381 letters)
>gnl|CDD|178232 PLN02625, PLN02625, uroporphyrin-III C-methyltransferase.
Length = 263
Score = 447 bits (1151), Expect = e-159
Identities = 195/281 (69%), Positives = 226/281 (80%), Gaps = 20/281 (7%)
Query: 94 NDIALQLPELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKA 153
NDIA QLPEL+ GPGNV+LVGTGPGDPDLLTLKA++++Q A
Sbjct: 2 NDIASQLPELE--------------------GPGNVFLVGTGPGDPDLLTLKALRLLQTA 41
Query: 154 DLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGG 213
D++LYDRLVS D+LDLV P A LLYVGK GYHSRTQEEIHELLLSFAE G TVVRLKGG
Sbjct: 42 DVVLYDRLVSPDILDLVPPGAELLYVGKRGGYHSRTQEEIHELLLSFAEAGKTVVRLKGG 101
Query: 214 DPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRK 273
DPLVFGRGGEEMD L++ GI V V+PGITAA G AELGIPLTHRGVA SVRFLTGH R+
Sbjct: 102 DPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFLTGHDRE 161
Query: 274 GGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIV 333
GGTDPL VAE AADPD+TLVVYMGL TLPSLA KL+ GLPP TPAAA+ERGTTP+QR+V
Sbjct: 162 GGTDPLDVAEAAADPDTTLVVYMGLGTLPSLAEKLIAAGLPPDTPAAAVERGTTPEQRVV 221
Query: 334 FSELKDLADKIGVEELVSPTLIIIGKVVSLSPFWPISSKEA 374
F L+D+A+ + LVSPT+I++G+VV+LSP WP +++E+
Sbjct: 222 FGTLEDIAEDVAAAGLVSPTVIVVGEVVALSPLWPWAAEES 262
>gnl|CDD|212501 cd11642, SUMT, Uroporphyrin-III C-methyltransferase
(S-Adenosyl-L-methionine:uroporphyrinogen III
methyltransferase, SUMT). SUMT, an enzyme of the
cobalamin and siroheme biosynthetic pathway, catalyzes
the transformation of uroporphyrinogen III into
precorrin-2. It transfers two methyl groups from
S-adenosyl-L-methionine to the C-2 and C-7 atoms of
uroporphyrinogen III to yield precorrin-2 via the
intermediate formation of precorrin-1. SUMT is the first
enzyme committed to the biosynthesis of siroheme or
cobalamin (vitamin B12), and precorrin-2 is a common
intermediate in the biosynthesis of corrinoids such as
vitamin B12, siroheme and coenzyme F430. In some
organisms, the SUMT domain is fused to the precorrin-2
oxidase/ferrochelatase domain to form siroheme synthase
or to uroporphyrinogen-III synthase to form bifunctional
uroporphyrinogen-III methylase/uroporphyrinogen-III
synthase.
Length = 233
Score = 368 bits (947), Expect = e-128
Identities = 127/234 (54%), Positives = 164/234 (70%), Gaps = 2/234 (0%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSR 188
VYLVG GPGDP+LLTLKA++++Q+AD++LYDRLVS ++LDL P+A L+YVGK G HS
Sbjct: 2 VYLVGAGPGDPELLTLKALRLLQEADVVLYDRLVSPEILDLAPPDAELIYVGKRPGKHSL 61
Query: 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIA 248
QEEI+ELL+ +A G VVRLKGGDP VFGRGGEE++ L++ GI +V+PGIT+A
Sbjct: 62 PQEEINELLVEYAREGKRVVRLKGGDPFVFGRGGEEIEALREAGIPFEVVPGITSAIAAP 121
Query: 249 AELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKL 308
A GIPLTHRGVA+SV F+TGH + G + A TLV+YMG+ LP +A +L
Sbjct: 122 AYAGIPLTHRGVASSVTFVTGHEKDGKDPSDW--AALAKSGGTLVIYMGVKNLPEIAAEL 179
Query: 309 MHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVS 362
+ G PP TP A IE TTP QR+V L DLA+ + P LI++G+VV
Sbjct: 180 IAAGRPPDTPVAIIENATTPDQRVVVGTLADLAELAAEAGVKPPALIVVGEVVR 233
>gnl|CDD|235711 PRK06136, PRK06136, uroporphyrin-III C-methyltransferase; Reviewed.
Length = 249
Score = 331 bits (852), Expect = e-114
Identities = 128/238 (53%), Positives = 166/238 (69%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G VYLVG GPGDPDL+TLK ++++++AD++LYD LVS ++L P+A L+YVGK AG H
Sbjct: 3 GKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVSPEILAYAKPDAELIYVGKRAGRH 62
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
S QEEI+ LL+ +A G VVRLKGGDP VFGRGGEE++ L+ GI +V+PGITAA
Sbjct: 63 STKQEEINRLLVDYARKGKVVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIA 122
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
AA GIPLTHRGVA SV F+TGH G +P AD TLV+YMG+ LP +A
Sbjct: 123 AAAYAGIPLTHRGVARSVTFVTGHEAAGKLEPEVNWSALADGADTLVIYMGVRNLPYIAA 182
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLS 364
+L+ G P TP A IE GTTP+QR+V L +A+ E++ SP +I+IG+VV+L
Sbjct: 183 QLLAAGRAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQSPAIIVIGEVVALR 240
>gnl|CDD|233426 TIGR01469, cobA_cysG_Cterm, uroporphyrin-III C-methyltransferase.
This model represents enzymes, or enzyme domains, with
uroporphyrin-III C-methyltransferase activity. This
enzyme catalyzes the first step committed to the
biosynthesis of either siroheme or cobalamin (vitamin
B12) rather than protoheme (heme). Cobalamin contains
cobalt while siroheme contains iron. Siroheme is a
cofactor for nitrite and sulfite reductases and
therefore plays a role in cysteine biosynthesis; many
members of this family are CysG, siroheme synthase, with
an additional N-terminal domain and with additional
oxidation and iron insertion activities [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 236
Score = 319 bits (819), Expect = e-109
Identities = 125/236 (52%), Positives = 160/236 (67%), Gaps = 1/236 (0%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSR 188
VYLVG GPGDP+LLTLKA++++Q+AD++LYD LVS ++L P A L+ VGK G HS+
Sbjct: 2 VYLVGAGPGDPELLTLKALRLLQEADVVLYDALVSPEILAYAPPQAELIDVGKRPGCHSK 61
Query: 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIA 248
QEEI+ LL+ A G VVRLKGGDP VFGRGGEE + L + GI +V+PG+T+A A
Sbjct: 62 KQEEINRLLVELAREGKKVVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAA 121
Query: 249 AELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKL 308
A GIPLTHRGVA+SV F+TGH + E A TLV+YMG+ LP +A +L
Sbjct: 122 AYAGIPLTHRGVASSVTFVTGHEADDKALEVDW-EALAKGAGTLVIYMGVRNLPEIAKEL 180
Query: 309 MHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLS 364
+ HG P TP A +E TTP QR++ L DLA+K L SP LI+IG+VV+L
Sbjct: 181 IEHGRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKSPALIVIGEVVALR 236
>gnl|CDD|223086 COG0007, CysG, Uroporphyrinogen-III methylase [Coenzyme
metabolism].
Length = 244
Score = 319 bits (819), Expect = e-109
Identities = 127/239 (53%), Positives = 160/239 (66%), Gaps = 4/239 (1%)
Query: 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
PG VYLVG GPGDP LLTL+A++ +Q+AD++LYDRLV +VL L +A +YVGK G
Sbjct: 3 PGKVYLVGAGPGDPGLLTLRALRALQEADVVLYDRLVPEEVLALARRDAERIYVGKRPGG 62
Query: 186 HSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAAS 245
HS+ Q+EI+ LL+ A G VVRLKGGDP +FGRGGEE++ L + GI+ +V+PGIT+A
Sbjct: 63 HSKPQDEINALLVELAREGKRVVRLKGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAI 122
Query: 246 GIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLA 305
A GIPLTHRGVA+S F+TGH R G D E A TLV+ MG S L +A
Sbjct: 123 AAPAYAGIPLTHRGVASSFTFVTGHDRDGKLD----WEALARSVGTLVILMGASRLAEIA 178
Query: 306 LKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLS 364
+L+ HG P TP A IE GTTP QR+V L DLA+ L P LI+IG+VV+L
Sbjct: 179 RELIAHGRSPDTPVAVIENGTTPDQRVVVGTLGDLAELAEEAGLTPPALIVIGEVVNLR 237
>gnl|CDD|182606 PRK10637, cysG, siroheme synthase; Provisional.
Length = 457
Score = 270 bits (692), Expect = 4e-87
Identities = 122/239 (51%), Positives = 161/239 (67%), Gaps = 5/239 (2%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G V LVG GPGD LLTLK ++ IQ+AD+++YDRLVS+D+++LV +A ++VGK AGYH
Sbjct: 216 GEVVLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYH 275
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
QEEI+++LL A+ G VVRLKGGDP +FGRGGEE++ L GI V+PGITAASG
Sbjct: 276 CVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASG 335
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
+A GIPLTHR A SVR +TGH + GG EN A TLV YMGL+ ++
Sbjct: 336 CSAYSGIPLTHRDYAQSVRLVTGHLKTGGE---LDWENLAAEKQTLVFYMGLNQAATIQQ 392
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLSP 365
KL+ HG+P P A +E GT+ QR+V L L + +++ SP+LII+G+VV L
Sbjct: 393 KLIEHGMPADMPVALVENGTSVTQRVVSGTLTQLGEL--AQQVNSPSLIIVGRVVGLRD 449
>gnl|CDD|180864 PRK07168, PRK07168, bifunctional uroporphyrinogen-III
methyltransferase/uroporphyrinogen-III synthase;
Reviewed.
Length = 474
Score = 200 bits (510), Expect = 6e-60
Identities = 101/237 (42%), Positives = 141/237 (59%), Gaps = 2/237 (0%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G VYLVG GPGD L+T KA++ +++AD++LYDRL++ L L+Y GK H
Sbjct: 3 GYVYLVGAGPGDEGLITKKAIECLKRADIVLYDRLLNPFFLSYTKQTCELMYCGKMPKNH 62
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
QE I+ LL FA+ G VVRLKGGDP +FGR GEE + L I +++PGIT++
Sbjct: 63 IMRQEMINAHLLQFAKEGKIVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIA 122
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
++ GIPLTHR +NSV LTGH++ TD N++ T+ YMG+ LP++
Sbjct: 123 ASSYAGIPLTHRNYSNSVTLLTGHAKGPLTD--HGKYNSSHNSDTIAYYMGIKNLPTICE 180
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
L G TP A IE GTT +QR+V L + + E + +P++ I+G VVSL
Sbjct: 181 NLRQAGKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKNENISNPSMTIVGDVVSL 237
>gnl|CDD|212500 cd11641, Precorrin-4_C11-MT, Precorrin-4 C11-methyltransferase
(CbiF/CobM). Precorrin-4 C11-methyltransferase
participates in the pathway toward the biosynthesis of
cobalamin (vitamin B12). There are two distinct
cobalamin biosynthetic pathways in bacteria. The aerobic
pathway requires oxygen, and cobalt is inserted late in
the pathway; the anaerobic pathway does not require
oxygen, and cobalt insertion is the first committed step
towards cobalamin synthesis. In the aerobic pathway,
CobM catalyzes the methylation of precorrin-4 at C-11 to
yield precorrin-5. In the anaerobic pathway, CibF
catalyzes the methylation of cobalt-precorrin-4 to
cobalt-precorrin-5. Both CibF and CobM, which are
homologous, are included in this model. There are about
30 enzymes involved in vitamin B12 synthetic pathway.
The enzymes involved in the aerobic pathway are prefixed
Cob and those of the anaerobic pathway Cbi. Most of the
enzymes are shared in both pathways and several of these
enzymes are pathway-specific.
Length = 228
Score = 178 bits (455), Expect = 2e-54
Identities = 76/238 (31%), Positives = 129/238 (54%), Gaps = 14/238 (5%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYHS 187
VY VG GPGDP+L+T+K +++++AD+++Y LV ++L+ P+A + +A S
Sbjct: 1 VYFVGAGPGDPELITVKGRRLLEEADVVIYAGSLVPPELLEYARPDAEIY---DSA---S 54
Query: 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGI 247
T EEI L+ A G VVRL GDP ++G E+M L GI +V+PG+++
Sbjct: 55 MTLEEIIALMKEAAREGKDVVRLHTGDPSLYGAIREQMRELDALGIPYEVVPGVSSFFAA 114
Query: 248 AAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAAD---PDSTLVVYMGLSTLPSL 304
AA LG LT V+ +V +R G P+ E+ A +T+ +++ + + +
Sbjct: 115 AAALGRELTLPEVSQTVIL----TRAAGRTPVPEGESLASLARHGATMAIFLSVHLIEEV 170
Query: 305 ALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVS 362
+L+ G PP TP A + R + P ++I+ L D+A+K+ + LI++G +
Sbjct: 171 VEELLEGGYPPDTPVAVVYRASWPDEKIIRGTLADIAEKVKEAGITRTALILVGPALD 228
>gnl|CDD|216012 pfam00590, TP_methylase, Tetrapyrrole (Corrin/Porphyrin)
Methylases. This family uses S-AdoMet in the
methylation of diverse substrates. This family includes
a related group of bacterial proteins of unknown
function. This family includes the methylase Dipthine
synthase.
Length = 202
Score = 169 bits (430), Expect = 5e-51
Identities = 82/215 (38%), Positives = 116/215 (53%), Gaps = 16/215 (7%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSR 188
+Y+VG GPGDP+LLTL+A++ +++AD+++ D +LDL+ P +GK
Sbjct: 2 LYIVGIGPGDPELLTLRALRALKEADVVIGDDRALEILLDLLRP------MGKELELLEG 55
Query: 189 TQEEIHELLLSFAEV--GATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
EEI ELL + A + G VV L GDPLV+G G ++ L+ GI+V+VIPGI++
Sbjct: 56 AYEEIAELLEAAALLRAGKDVVVLVSGDPLVYGTGSYLVEALEAAGIEVEVIPGISSLQA 115
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
AA LGIPLT GV + H R T + E D TLV+ L +A
Sbjct: 116 AAARLGIPLTDGGVVSL------HGRGLETLRARLLEALLAGD-TLVLLTDPHRLAEIAE 168
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLA 341
L+ G TP A +E TP +RI+ L +LA
Sbjct: 169 LLLELG-DDDTPVAVVENLGTPDERIIRGTLAELA 202
>gnl|CDD|225430 COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism].
Length = 254
Score = 166 bits (422), Expect = 3e-49
Identities = 80/238 (33%), Positives = 134/238 (56%), Gaps = 8/238 (3%)
Query: 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAG 184
VY +G GPGDPDL+T+K ++++KAD+++Y LV ++L+ P+A ++
Sbjct: 2 AMKVYFIGAGPGDPDLITVKGQRLLEKADVVIYAGSLVPPELLEYCRPDAEIV------N 55
Query: 185 YHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAA 244
S T EEI +L++ G VVRL GDP ++G E+M L+ GI +V+PG+++
Sbjct: 56 SASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSF 115
Query: 245 SGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSL 304
+ AA LGI LT GV+ +V LT S + A +T+V+++G+ + +
Sbjct: 116 AAAAAALGIELTVPGVSQTV-ILTRPSGRTPVPEKESLAALAKHGATMVIFLGVHAIDKV 174
Query: 305 ALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVS 362
+L+ G PP TP A + R + P ++I+ L+D+A+K+ + LII+G V+
Sbjct: 175 VEELLEGGYPPDTPVAVVYRASWPDEKIIRGTLEDIAEKVKEAGIRRTALIIVGDVLD 232
>gnl|CDD|212499 cd09815, TP_methylase, S-AdoMet dependent tetrapyrrole methylases.
This family uses S-AdoMet (S-adenosyl-L-methionine or
SAM) in the methylation of diverse substrates. Most
members catalyze various methylation steps in cobalamin
(vitamin B12) biosynthesis. There are two distinct
cobalamin biosynthetic pathways in bacteria. The aerobic
pathway requires oxygen, and cobalt is inserted late in
the pathway; the anaerobic pathway does not require
oxygen, and cobalt insertion is the first committed step
towards cobalamin synthesis. The enzymes involved in the
aerobic pathway are prefixed Cob and those of the
anaerobic pathway Cbi. Most of the enzymes are shared by
both pathways and a few enzymes are pathway-specific.
Diphthine synthase and Ribosomal RNA small subunit
methyltransferase I (RsmI) are two superfamily members
that are not involved in cobalamin biosynthesis.
Diphthine synthase participates in the posttranslational
modification of a specific histidine residue in
elongation factor 2 (EF-2) of eukaryotes and archaea to
diphthamide. RsmI catalyzes the 2-O-methylation of the
ribose of cytidine 1402 (C1402) in 16S rRNA using
S-adenosylmethionine (Ado-Met) as the methyl donor.
Length = 224
Score = 158 bits (402), Expect = 1e-46
Identities = 79/234 (33%), Positives = 112/234 (47%), Gaps = 14/234 (5%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSN----DVLDLVAPNARLLYVGKTAG 184
+Y VG GPGDPDLLTL+A++V++ AD+++ D VS + A ++ +
Sbjct: 1 LYFVGAGPGDPDLLTLRAVEVLRSADVVVVDDKVSELLRLKPRAHLPDGAEIVELVDEEE 60
Query: 185 YHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAA 244
E+ LL A G VVRL GDPL+ G G E + G+ V+V+PG+++A
Sbjct: 61 DDHGVLAEVARTLLEAARQGRDVVRLVAGDPLLAGPGAELRAVAEDAGVDVEVVPGVSSA 120
Query: 245 SGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSL 304
+ + A GIPL VR A AA P TLV+Y ++ +
Sbjct: 121 TAVPAYAGIPLGQSVTFADVR--------DDEPGAEAAALAAAPQ-TLVLYADPASALAD 171
Query: 305 ALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIG 358
K + LP TP GTT QRI L +LA EEL PT+I++G
Sbjct: 172 IAKELREALPDDTPVVVTANGTTRGQRIRTGTLAELAAARE-EELPGPTIILVG 224
>gnl|CDD|200107 TIGR01465, cobM_cbiF, precorrin-4 C11-methyltransferase. This
model represents precorrin-4 C11-methyltransferase, one
of two methyltransferases commonly referred to as
precorrin-3 methylase (the other is precorrin-3B
C17-methyltransferase, EC 2.1.1.131). This enzyme
participates in the pathway toward the biosynthesis of
cobalamin and related products [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 247
Score = 159 bits (403), Expect = 1e-46
Identities = 81/238 (34%), Positives = 125/238 (52%), Gaps = 14/238 (5%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYHS 187
VY +G GPGDPDL+T+K K+I+ AD++LY LV ++L P A ++ +AG
Sbjct: 1 VYFIGAGPGDPDLITVKGRKLIESADVILYAGSLVPPELLAHCRPGAEVV---NSAGMS- 56
Query: 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGI 247
EEI +++ G V RL GDP ++G E+M L+ GI +V+PG+++
Sbjct: 57 --LEEIVDIMSDAHREGKDVARLHSGDPSIYGAIAEQMRLLEALGIPYEVVPGVSSFFAA 114
Query: 248 AAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAAD---PDSTLVVYMGLSTLPSL 304
AA LG LT V+ +V +R G P+ E AD +T+ +++ L +
Sbjct: 115 AAALGAELTVPEVSQTVIL----TRASGRTPMPEGEKLADLAKHGATMAIFLSAHILDKV 170
Query: 305 ALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVS 362
+L+ HG TP A + R T P ++IV L DLAD + E + TLI++G +
Sbjct: 171 VKELIEHGYSEDTPVAVVYRATWPDEKIVRGTLADLADLVREEGIYRTTLILVGPALD 228
>gnl|CDD|212510 cd11724, TP_methylase_like, Uncharacterized subfamily of S-AdoMet
dependent tetrapyrrole methylases. TP-methylases use
S-AdoMet (S-adenosyl-L-methionine or SAM) in the
methylation of diverse substrates. Most members catalyze
various methylation steps in cobalamin (vitamin B12)
biosynthesis, other members like Diphthine synthase and
Ribosomal RNA small subunit methyltransferase I (RsmI)
act on other substrates. The function of this subfamily
is not known.
Length = 255
Score = 115 bits (291), Expect = 4e-30
Identities = 75/256 (29%), Positives = 111/256 (43%), Gaps = 27/256 (10%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLV-------APNARL-LY 178
G +YLVG GPGDPD +TL+A++VI KAD++ + + D + P Y
Sbjct: 1 GKLYLVGVGPGDPDNITLRALEVIAKADIIFCPKEIVKRFADYLKGKPVLEDPWKLFWHY 60
Query: 179 VGK-------TAGYHSRTQEEIHELLLSFAEV-------GATVVRLKGGDPLVFGRGGEE 224
GK +EE F +V G V L GGDP ++G
Sbjct: 61 GGKPWENLEAEKSPREAFEEEKKRQREEFVKVIREALAQGKNVALLDGGDPTIYGPSHWL 120
Query: 225 MDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAEN 284
M+ + ++IPG++ + A L +T G A SV + + D L +
Sbjct: 121 MEGFDD--LDPEIIPGVSCFNAANAALKRSITTGGDARSVILTAPYGLEENEDRLDAEDL 178
Query: 285 AADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQ-QRIVFSELKDLADK 343
A P +TLV +M LS LP L L H PP TP A + P +++V L + +K
Sbjct: 179 AKYP-ATLVFFMMLSELPKLVKLLKKH-YPPDTPVAIVYHAGYPDKEKVVRGTLDTILEK 236
Query: 344 IGVEELVSPTLIIIGK 359
+ E+ LI +G
Sbjct: 237 LKGEKEPFEGLIYVGD 252
>gnl|CDD|185370 PRK15473, cbiF, cobalt-precorrin-4 C(11)-methyltransferase;
Provisional.
Length = 257
Score = 115 bits (290), Expect = 6e-30
Identities = 70/235 (29%), Positives = 128/235 (54%), Gaps = 8/235 (3%)
Query: 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAG 184
P V+ VG GPGD +L+TLK +++Q+A +++Y L++ ++LD A +A
Sbjct: 7 PRCVWFVGAGPGDKELITLKGYRLLQQAQVVIYAGSLINTELLDYCPAQAE---CHDSAE 63
Query: 185 YHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAA 244
H E+I +L+ + + G TVVRL+ GD ++G E+ + L ++GI +V+PG+++
Sbjct: 64 LH---LEQIIDLMEAGVKAGKTVVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSF 120
Query: 245 SGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSL 304
G AAELG+ T V+ S+ +T + E+ A +++ +++ + + +
Sbjct: 121 LGAAAELGVEYTVPEVSQSL-IITRMEGRTPVPAREQLESFASHQTSMAIFLSVQRIHRV 179
Query: 305 ALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGK 359
A +L+ G P TP A I + T P+ + V L D+A+K+ + LI++G
Sbjct: 180 AERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIAEKVRDAGIRKTALILVGN 234
>gnl|CDD|212504 cd11645, Precorrin_2_C20_MT, Precorrin-2 C20-methyltransferase,
also named CobI or CbiL. Precorrin-2
C20-methyltransferase participates in the pathway toward
the biosynthesis of cobalamin (vitamin B12). There are
two distinct cobalamin biosynthetic pathways in
bacteria. The aerobic pathway requires oxygen, and
cobalt is inserted late in the pathway; the anaerobic
pathway does not require oxygen, and cobalt insertion is
the first committed step towards cobalamin synthesis.
Precorrin-2 C20-methyltransferase catalyzes methylation
at the C-20 position of a cyclic tetrapyrrole ring of
precorrin-2 using S-adenosylmethionine as a methyl group
source to produce precorrin-3A. In the anaerobic
pathway, cobalt is inserted into precorrin-2 by CbiK to
generate cobalt-precorrin-2, which is the substrate for
CbiL, a C20 methyltransferase. In Clostridium difficile,
CbiK and CbiL are fused into a bifunctional enzyme. In
the aerobic pathway, the precorrin-2
C20-methyltransferase is named CobI. This family
includes CbiL and CobI precorrin-2
C20-methyltransferases, both as stand-alone enzymes and
when CbiL forms part of a bifunctional enzyme.
Length = 226
Score = 94.9 bits (237), Expect = 9e-23
Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 40/236 (16%)
Query: 130 YLVGTGPGDPDLLTLKAMKVIQKADLLLY-------DRLVSNDVLDLVAPNARLLYV--- 179
Y VG GPGDP+LLTLKA++++++AD++ V+ + P +L +
Sbjct: 3 YGVGVGPGDPELLTLKAVRILREADVIAVPGSKAGEGSAALIIVVAYLIPEKEILPLEFP 62
Query: 180 -GKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI 238
K +E + + E G V L GDP ++ + L++ G++V+ I
Sbjct: 63 MTKDKEVLEEAWDEAAAEIAAELEAGKDVAFLTLGDPSLYSTFSYLLRRLREPGVEVETI 122
Query: 239 PGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPD--------- 289
PGIT+ S AA LGIPL G + L + +
Sbjct: 123 PGITSFSAAAARLGIPLAE-----------------GDERLAILPATLGEEELEEALELF 165
Query: 290 STLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIG 345
T+V+ L + L GL A +ER +RIV +L+ +K+
Sbjct: 166 DTVVLMKVGRNLDEVRELLEEAGLLDR--AVYVERCGMEGERIV-RDLEADPEKLP 218
>gnl|CDD|233425 TIGR01467, cobI_cbiL, precorrin-2 C20-methyltransferase. This
model represents precorrin-2 C20-methyltransferase, one
of several closely related
S-adenosylmethionine-dependent methyltransferases
involved in cobalamin (vitamin B12) biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 230
Score = 90.8 bits (226), Expect = 4e-21
Identities = 62/240 (25%), Positives = 101/240 (42%), Gaps = 40/240 (16%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDR-------LVSNDVLDLVAPNA----R 175
G +Y VG GPGDP+L+T+KA++ ++ AD++ L V D + PN
Sbjct: 1 GKLYGVGVGPGDPELITVKALEALRSADVIAVPASKKGRESLARKIVEDYLKPNDTRILE 60
Query: 176 LLY-VGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQ 234
L++ + K + +E E + + E G V L GDP ++ + LQ GI+
Sbjct: 61 LVFPMTKDRDELEKAWDEAAEAVAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIE 120
Query: 235 VKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDS---- 290
V+V+PGIT+ + A+ G+PL G + L + A
Sbjct: 121 VEVVPGITSFAACASAAGLPLVE-----------------GDESLAILPATAGEAELEKA 163
Query: 291 -----TLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIG 345
T+V+ LP + L G A +ER T P ++IV + + D +
Sbjct: 164 LAEFDTVVLMKVGRNLPQIKEALAKLGRLDA--AVVVERATMPDEKIVDLVREAIDDALP 221
>gnl|CDD|212505 cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase
(CobJ/CbiH). Precorrin-3B C(17)-methyltransferase
participates in the pathway toward the biosynthesis of
cobalamin (vitamin B12). There are two distinct
cobalamin biosynthetic pathways. The aerobic pathway
requires oxygen, and cobalt is inserted late in the
pathway; the anaerobic pathway does not require oxygen,
and cobalt insertion is the first committed step towards
cobalamin synthesis. This model includes CobJ of the
aerobic pathway and CbiH of the anaerobic pathway, both
as stand-alone enzymes and when CobJ forms part of a
bifunctional enzyme. In the aerobic pathway, once CobG
has generated precorrin-3b, CobJ catalyzes the
methylation of precorrin-3b at C-17 to form precorrin-4
(the extruded methylated C-20 fragment is left attached
as an acyl group at C-1). In the corresponding anaerobic
pathway, CbiH carries out this ring contraction, using
cobalt-precorrin-3b as a substrate to generate a
tetramethylated delta-lactone.
Length = 240
Score = 89.8 bits (224), Expect = 8e-21
Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 17/137 (12%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLL-YDRLVSNDVLDLVAPNARLLYVGKTAGY 185
G +Y+VG GPGDPDL+T +A + I++AD+++ Y LDL+ L GK
Sbjct: 1 GKLYVVGIGPGDPDLMTPRAREAIEEADVVVGYKTY-----LDLIED----LLEGKEV-I 50
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGG---EEMDFLQQKGIQVKVIPG 240
S EE+ L + A G TV + GDP V+G G E + + ++V+VIPG
Sbjct: 51 SSGMGEEVERARLAVELAREGKTVALVSSGDPGVYGMAGLVLELAE-KEGDDVEVEVIPG 109
Query: 241 ITAASGIAAELGIPLTH 257
+TAA AA LG PL H
Sbjct: 110 VTAALAAAALLGAPLMH 126
>gnl|CDD|223942 COG1010, CobJ, Precorrin-3B methylase [Coenzyme metabolism].
Length = 249
Score = 86.1 bits (214), Expect = 2e-19
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 17/138 (12%)
Query: 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLL-YDRLVSNDVLDLVAPNARLLYVGKTAG 184
G +Y+VG GPGDP+L+T +A + +++AD+++ Y + D+++L P +
Sbjct: 2 TGKLYVVGIGPGDPELMTPEARRALEEADVIVGYTTYL--DLIEL-RPGKEV-------- 50
Query: 185 YHSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGG---EEMDFLQQKGIQVKVIP 239
S +EEI + + A G V + GDP V+G G E + + V+V+P
Sbjct: 51 IRSGMREEIERAKEAIELAAEGRDVALVSSGDPGVYGMAGLVLEAAEEEGWYDVDVEVVP 110
Query: 240 GITAASGIAAELGIPLTH 257
G+TAA AA LG PL H
Sbjct: 111 GVTAALAAAARLGAPLGH 128
>gnl|CDD|225152 COG2243, CobF, Precorrin-2 methylase [Coenzyme metabolism].
Length = 234
Score = 84.7 bits (210), Expect = 5e-19
Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY------DRLVSNDVLDLVAPNARLLYVG 180
G +Y VG GPGDP+LLTLKA++ ++KAD++ L V D + P +R++ +
Sbjct: 2 GKLYGVGLGPGDPELLTLKAIRALKKADVVYVPSKKGKGSLAREIVEDYLTPGSRIVELH 61
Query: 181 KTAGYHSRTQ-----EEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQV 235
R + EE + + E G V L GDP + ++ L+++G +V
Sbjct: 62 FPMTTDMREELEDAWEEAAAEVAAELEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEV 121
Query: 236 KVIPGITAASGIAAELGIPLT 256
+V+PG+++ S AA LG+PL
Sbjct: 122 EVVPGVSSFSACAARLGVPLV 142
>gnl|CDD|235597 PRK05765, PRK05765, precorrin-3B C17-methyltransferase;
Provisional.
Length = 246
Score = 81.0 bits (200), Expect = 2e-17
Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 38/254 (14%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLL----YDRLVSNDVLDLVAPNARLLYVGKT 182
G +Y+VG GPG + T+KA + I+K+++++ Y RL+S D+LD GK
Sbjct: 2 GKLYIVGIGPGSKEQRTIKAQEAIEKSNVIIGYNTYLRLIS-DLLD-----------GKE 49
Query: 183 AGYHSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQV--KVI 238
+R +EEI + A G V + GDP V+G G + + ++ + V +VI
Sbjct: 50 V-IGARMKEEIFRANTAIEKALEGNIVALVSSGDPQVYGMAGLVFELISRRKLDVDVEVI 108
Query: 239 PGITAASGIAAELGIPLTHR-GVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMG 297
PG+TAA AA LG PL+ V + L + L AA+ D +V Y
Sbjct: 109 PGVTAALAAAARLGSPLSLDFVVISLSDLLIPRE-----EILHRVTKAAEADFVIVFYNP 163
Query: 298 L-STLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIV---FSELKDLADKIGVEELVSPT 353
+ L + ++ P+TP ++ + +V S K+ D+IG+ T
Sbjct: 164 INENLLIEVMDIVSKHRKPNTPVGLVKSAYRNNENVVITTLSSWKEHMDEIGMT-----T 218
Query: 354 LIIIGKVVSLSPFW 367
+IIG SL+ W
Sbjct: 219 TMIIGN--SLTYSW 230
>gnl|CDD|212503 cd11644, Precorrin-6Y-methylase, Precorrin-6Y methyltransferase,
the cobalamin biosynthesis enzyme CbiE. Precorrin-6Y
methyltransferase participates in the pathway toward the
biosynthesis of cobalamin (vitamin B12). There are two
distinct cobalamin biosynthetic pathways in bacteria.
The aerobic pathway requires oxygen, and cobalt is
inserted late in the pathway; the anaerobic pathway does
not requires oxygen, and cobalt insertion is the first
committed step towards cobalamin synthesis. This model
represents the CbiE subunit of precorrin-6Y
C5,15-methyltransferase from the anaerobic pathway, a
bifunctional enzyme that catalyzes two methylations (at
C-5 and C-15) in precorrin-6Y, as well as the
decarboxylation of the acetate side chain located in
ring C, in order to generate precorrin-8X. In the
anaerobic pathway, two enzymes are required to produce
precorrin-8X: CbiE and CbiT, which can be fused as CbiET
(sometimes called CobL). In the aerobic pathway, the
bifunctional enzyme is called CobL.
Length = 201
Score = 79.1 bits (196), Expect = 2e-17
Identities = 58/217 (26%), Positives = 87/217 (40%), Gaps = 31/217 (14%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLL-YDRLVSNDVLDLVAPNARLLYVGKTAGYHS 187
+ +VG GPG PD LT A + I++AD+L+ R L+L + S
Sbjct: 1 ITVVGIGPGGPDGLTPAAREAIEEADVLVGGKRH-----LELFPD-----LGAEKIPLPS 50
Query: 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQK--GIQVKVIPGITAAS 245
++ ELL A G VV L GDPL +G G L ++ +V+VIPGI++
Sbjct: 51 D---DLAELLERLAAAGRRVVVLASGDPLFYGIGA----TLARRLGAEEVEVIPGISSVQ 103
Query: 246 GIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLA 305
A LG P ++ H R D + V+ +T +A
Sbjct: 104 LAFARLGWPW------QDAAVVSLHGR----DLEELLRALRPGRKVAVLTDDENTPAEIA 153
Query: 306 LKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLAD 342
L+ GL E P +RI ++LA+
Sbjct: 154 RLLLERGLGDSR-LTVGENLGYPDERITKGTAEELAE 189
>gnl|CDD|233424 TIGR01466, cobJ_cbiH, precorrin-3B C17-methyltransferase. This
model represents precorrin-3B C17-methyltransferase, one
of two methyltransferases commonly referred to as
precorrin-3 methylase (the other is precorrin-4
C11-methyltransferase, EC 2.1.1.133). This enzyme
participates in the pathway toward the biosynthesis of
cobalamin and related products. Members of this family
may appear as fusion proteins with other enzymes of
cobalamin biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 239
Score = 80.0 bits (198), Expect = 3e-17
Identities = 73/245 (29%), Positives = 112/245 (45%), Gaps = 39/245 (15%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLL-YDRLVSNDVLDLVAPNARLLYVGKTAGYHS 187
+Y+VG GPG +L+T +A + + +AD+++ Y LDL+ L GK S
Sbjct: 1 LYVVGIGPGAEELMTPEAKEALAEADVIVGYKTY-----LDLIED----LIPGKEV-VTS 50
Query: 188 RTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKG--IQVKVIPGITA 243
+EEI EL + A G TV + GDP ++G + L++KG + ++VIPGITA
Sbjct: 51 GMREEIARAELAIELAAEGRTVALVSSGDPGIYGMAALVFEALEKKGAEVDIEVIPGITA 110
Query: 244 ASGIAAELGIPLTHRGVANSVR-FLTGHSRKGGTDPLFVAEN----AADPDSTLVVYMGL 298
AS A+ LG PL H S+ LT P E AA+ D + +Y
Sbjct: 111 ASAAASLLGAPLGHDFCVISLSDLLT---------PWPEIEKRLRAAAEADFVIAIYNPR 161
Query: 299 ST----LPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVS-PT 353
S A++++ P TP + + + + L +L EEL+ T
Sbjct: 162 SKRRPEQFRRAMEILLEHRKPDTPVGIVRNAGREGEEVEITTLAELD-----EELIDMLT 216
Query: 354 LIIIG 358
+IIG
Sbjct: 217 TVIIG 221
>gnl|CDD|235512 PRK05576, PRK05576, cobalt-precorrin-2 C(20)-methyltransferase;
Validated.
Length = 229
Score = 74.6 bits (184), Expect = 2e-15
Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 24/218 (11%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLL-------LYDRLVSNDVLDLVAPNARL--L 177
G +Y +G GPGDP+LLT+KA +++++AD++ L N V + + L
Sbjct: 2 GKLYGIGLGPGDPELLTVKAARILEEADVVYAPASRKGGGSLALNIVRPYLKEETEIVEL 61
Query: 178 Y--VGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQV 235
+ + K +E E + + AE G V + GDP ++ +++L+ I+V
Sbjct: 62 HFPMSKDEEEKEAVWKENAEEIAAEAEEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEV 121
Query: 236 KVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVY 295
+ +PGI++ + IA+ G+PL + ++ T + + D DS VV
Sbjct: 122 ETVPGISSFTAIASRAGVPLAMGDESLAII--------PATREALIEQALTDFDS--VVL 171
Query: 296 MGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIV 333
M + +L +L+ G + A + R ++I+
Sbjct: 172 MKVYKNFALIEELLEEG---YLDALYVRRAYMEGEQIL 206
>gnl|CDD|180341 PRK05990, PRK05990, precorrin-2 C(20)-methyltransferase; Reviewed.
Length = 241
Score = 72.7 bits (179), Expect = 1e-14
Identities = 64/231 (27%), Positives = 96/231 (41%), Gaps = 39/231 (16%)
Query: 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY---------------DRLVSNDV-LDL 169
G + +G GPGDP+LLTLKA++++Q A ++ Y L L L
Sbjct: 2 KGRLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGKKGNAFGIVEAHLSPGQTLLPL 61
Query: 170 VAP------NARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGE 223
V P L Y A ++ + E + L + G V + GDP +G
Sbjct: 62 VYPVTTEILPPPLCYETVIADFYDTSAEAVAAHL----DAGRDVAVICEGDPFFYGSYMY 117
Query: 224 EMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLF-VA 282
D L + + +VIPG+ + G + LG PL +R + SV G P +
Sbjct: 118 LHDRLAPR-YETEVIPGVCSMLGCWSVLGAPLVYRNQSLSVL--------SGVLPEEELR 168
Query: 283 ENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIV 333
AD D+ +++ +G L + L GL A +ER T QRIV
Sbjct: 169 RRLADADAAVIMKLG-RNLDKVRRVLAALGLLDR--ALYVERATMANQRIV 216
>gnl|CDD|235609 PRK05787, PRK05787, cobalt-precorrin-6Y C(5)-methyltransferase;
Validated.
Length = 210
Score = 70.7 bits (174), Expect = 3e-14
Identities = 55/148 (37%), Positives = 70/148 (47%), Gaps = 25/148 (16%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAP----NARLLYVGKTAG 184
+Y+VG GPGDP+ LTLKA++ I+KAD+++ S VL+L A +L G
Sbjct: 2 IYIVGIGPGDPEYLTLKALEAIRKADVVVG----SKRVLELFPELIDGEAFVLTAGL--- 54
Query: 185 YHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAA 244
R E EL G VV L GDPL G G V+VIPGI++
Sbjct: 55 ---RDLLEWLELAAK----GKNVVVLSTGDPLFSGLGKLLKVRR-AVAEDVEVIPGISSV 106
Query: 245 SGIAAELGIPLTHRGVANSVRFLTGHSR 272
AA LGI + N V F T H R
Sbjct: 107 QYAAARLGIDM------NDVVFTTSHGR 128
>gnl|CDD|225150 COG2241, CobL, Precorrin-6B methylase 1 [Coenzyme metabolism].
Length = 210
Score = 68.4 bits (168), Expect = 2e-13
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 23/148 (15%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLL-YDRLVSNDVLDLVAPN--ARLLYVGKTAGY 185
+ +VG GPG P+ LTL A++ I++AD++ R L+L+ P A +
Sbjct: 2 ITVVGIGPGGPEGLTLAAIEAIRRADVVAGSKR-----HLELLPPLIKAERIIWPYPFDA 56
Query: 186 HSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAAS 245
S EEI G VV L GDPL G G + +V++IPGI++
Sbjct: 57 ES--LEEILAER-----KGRDVVVLASGDPLFSGVGRLLR--RKFSCEEVEIIPGISSVQ 107
Query: 246 GIAAELGIPLTHRGVANSVRFLTGHSRK 273
AA LG PL ++ H R
Sbjct: 108 LAAARLGWPL------QDTEVISLHGRP 129
>gnl|CDD|233878 TIGR02467, CbiE, precorrin-6y C5,15-methyltransferase
(decarboxylating), CbiE subunit. This model recognizes
the CbiE methylase which is responsible, in part (along
with CbiT), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiT subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL.
Length = 204
Score = 61.9 bits (151), Expect = 3e-11
Identities = 53/229 (23%), Positives = 88/229 (38%), Gaps = 28/229 (12%)
Query: 131 LVGTGPGDPDLLTLKAMKVIQKADLLL-YDRLVSNDVLDLVAPNARLLYVGKTAGYHSRT 189
+VG GPG P+LLT A++ I+KADL++ +R + L + T
Sbjct: 1 VVGIGPGGPELLTPAAIEAIRKADLVVGGERHLE----LLAELIGEKREIILTYKDLDEL 56
Query: 190 QEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGI--QVKVIPGITAASGI 247
E I VV L GDPL +G G L ++ ++++IPGI++
Sbjct: 57 LEFIAATRK-----EKRVVVLASGDPLFYGIGR----TLAERLGKERLEIIPGISSVQYA 107
Query: 248 AAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALK 307
A LG+P ++ H R D L +A ++ + +A +
Sbjct: 108 FARLGLPWQD------AVVISLHGR--ELDELLLALLRGHRKVAVLTD-PRNGPAEIARE 158
Query: 308 LMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLII 356
L+ G+ E +RI L + + SP L++
Sbjct: 159 LIELGIGGSYELTVGENLGYEDERI---TEGTLEEIAAAQFDFSPLLVV 204
>gnl|CDD|212502 cd11643, Precorrin-6A-synthase, Precorrin-6A synthase, the
cobalamin biosynthesis enzyme CobF. Precorrin-6A
synthase participates in the pathway toward the
biosynthesis of cobalamin (vitamin B12). There are two
distinct cobalamin biosynthetic pathways in bacteria.
The aerobic pathway requires oxygen, and cobalt is
inserted late in the pathway; the anaerobic pathway does
not require oxygen, and cobalt insertion is the first
committed step towards cobalamin synthesis. This model
represents CobF, the precorrin-6A synthase, an enzyme
specific to the aerobic pathway. After precorrin-4 is
methylated at C-11 by CobM to produce precorrin-5, CobF
catalyzes the removal of the extruded acyl group in the
subsequent step, and the addition of a methyl group at
C-1. The product of this reaction is precorrin-6A, which
gets reduced by an NADH-dependent reductase to yield
precorrin-6B. This family includes enzymes in GC-rich
Gram-positive bacteria, alpha proteobacteria and
Pseudomonas-related species.
Length = 247
Score = 60.7 bits (148), Expect = 1e-10
Identities = 52/201 (25%), Positives = 76/201 (37%), Gaps = 54/201 (26%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVI-------------QKADLLLYDRLVSNDVLDLVAPNAR 175
+ L+G GPGDP+ LTL+A+ + KADLL R + L AP R
Sbjct: 1 LLLIGIGPGDPEHLTLQAIAALNRADVFFVLDKGEAKADLLALRREICARHLT--APGYR 58
Query: 176 LL-------------YVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFG--- 219
++ Y +H+ +L+ G T L GDP ++
Sbjct: 59 VVEVDDPPRDRAPADYRAAVDDWHAARAAIYADLIAEELPDGGTGAFLVWGDPSLYDSTL 118
Query: 220 ------RGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRK 273
R +DF V+VIPGIT+ +AA IPL + + TG R+
Sbjct: 119 RILERLRARGRLDF------DVEVIPGITSVQALAARHRIPLN--RIGEPIHITTG--RR 168
Query: 274 GGTDPLFVAENAADPDSTLVV 294
+AE +VV
Sbjct: 169 -------LAETWPAGVDNVVV 182
>gnl|CDD|131487 TIGR02434, CobF, precorrin-6A synthase (deacetylating). In the
aerobic cobalamin biosythesis pathway, four enzymes are
involved in the conversion of precorrin-3A to
precorrin-6A. The first of the four steps is carried out
by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding
precorrin-3B as the product. This is followed by three
methylation reactions, which introduce a methyl group at
C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and
C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise
to precorrin-4, precorrin-5 and precorrin-6A,
respectively. This model identifies CobF in High GC gram
positive, alphaproteobacteria and pseudomonas-related
species.
Length = 249
Score = 55.9 bits (135), Expect = 5e-09
Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 34/181 (18%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVI-------------QKADLLLYDRLVSNDVLDLVAPNAR 175
+ L+G G GDP+ LTL+A+ + QK+DL+ R + + AP R
Sbjct: 3 ILLIGIGAGDPEQLTLQAVDALNHADVFFVLDKGEQKSDLVALRREICARYVT--APGYR 60
Query: 176 LL-------------YVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFG--- 219
++ Y +H++ + + + T L GDP ++
Sbjct: 61 IVEVDDPERDAGADDYRAAVDDWHAQRADIWAQAIAEELGDDGTGAFLVWGDPSLYDSTL 120
Query: 220 RGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSV---RFLTGHSRKGGT 276
R E + L +VIPGIT+ + A IPL G + R L G
Sbjct: 121 RILERLRALGGVPFDYEVIPGITSVQALTARHRIPLNRIGEPVQITTGRRLAEGGFPEGD 180
Query: 277 D 277
Sbjct: 181 T 181
>gnl|CDD|180342 PRK05991, PRK05991, precorrin-3B C17-methyltransferase;
Provisional.
Length = 250
Score = 55.1 bits (133), Expect = 1e-08
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLL-YDRLVSNDVLDLVAPNARLLYVGKTAGY 185
G ++++GTGPG+P+ +T +A+ ++ A Y + D L L A R +
Sbjct: 3 GRLFVIGTGPGNPEQMTPEALAAVEAATDFFGYGPYL--DRLPLRADQLR---------H 51
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGE-----EMDFLQQKGIQVKVI 238
S +EE+ L+ A GA V + GGDP VF E + + + ++
Sbjct: 52 ASDNREELDRAGAALAMAAAGANVCVVSGGDPGVFAMAAAVCEAIENGPAAWRAVDLTIV 111
Query: 239 PGITAASGIAAELGIPLTH 257
PG+TA +AA +G PL H
Sbjct: 112 PGVTAMLAVAARIGAPLGH 130
>gnl|CDD|236218 PRK08284, PRK08284, precorrin 6A synthase; Provisional.
Length = 253
Score = 53.3 bits (129), Expect = 4e-08
Identities = 52/201 (25%), Positives = 77/201 (38%), Gaps = 54/201 (26%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLY-------DRLVS--NDVLD--LVAPNARLL 177
+ L+G G GDPD LTL+A+K + +AD+ D LV+ ++ + P R++
Sbjct: 4 LLLIGIGAGDPDHLTLQAIKALNRADVFFVPDKGADKDDLVALRREICARHITGPGYRVV 63
Query: 178 -------------YVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDP--------- 215
Y +H+ L+ G T L GDP
Sbjct: 64 EFDDPVRDRAPDDYRAAVDDWHAARAALYERLIAEELPDGGTGAFLVWGDPSLYDSTLRI 123
Query: 216 --LVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRK 273
V RG D+ +VIPGIT+ +AA IPL +R + V TG R+
Sbjct: 124 LERVRARGRVAFDY--------EVIPGITSVQALAARHRIPL-NR-IGEPVHITTG--RR 171
Query: 274 GGTDPLFVAENAADPDSTLVV 294
+AE +VV
Sbjct: 172 -------LAEGWPAGVDNVVV 185
>gnl|CDD|185375 PRK15478, cbiH, cobalt-precorrin-3B C(17)-methyltransferase;
Provisional.
Length = 241
Score = 53.0 bits (127), Expect = 4e-08
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLL----YDRLVSNDVLDLVAPNARLLYVGKTAG 184
+ ++G GPG ++T++A++ +Q A++++ Y LV D +++ G
Sbjct: 2 LSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKTYTHLVKAFTGD-----KQVIKTGMCKE 56
Query: 185 YHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFL--QQKGIQVKVIPGIT 242
R Q I A+ G V + GD ++G G ++ + Q+ ++V++IPG+T
Sbjct: 57 IE-RCQAAI-----ELAQAGHNVALISSGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMT 110
Query: 243 AASGIAAELGIPLTH 257
A+ A+ LG PL H
Sbjct: 111 ASIAAASLLGAPLMH 125
>gnl|CDD|212506 cd11647, Diphthine_synthase, Diphthine synthase, also known as
DPH5. Diphthine synthase, also known as diphthamide
biosynthesis S-adenosylmethionine-dependent
methyltransferase, participates in the posttranslational
modification of a specific histidine residue in
elongation factor 2 (EF-2) of eukaryotes and archaea to
diphthamide. It catalyzes the trimethylation step in
diphthamide biosynthesis. Diphthamide is the target of
diphtheria toxin, which ADP-ribosylates diphthamide and
inhibits protein synthesis, leading to host cell death.
Length = 241
Score = 47.9 bits (115), Expect = 3e-06
Identities = 61/271 (22%), Positives = 101/271 (37%), Gaps = 74/271 (27%)
Query: 130 YLVGTGPGDPDLLTLKAMKVIQKADLLLYD----RLVSNDVLDLVAPNARLLYVGKTAGY 185
YLVG G GD +TLK ++ ++KAD + + L+ + L + GK
Sbjct: 3 YLVGLGLGDEKDITLKGLEAVKKADKVYLEAYTSILMGGTLEALEE------FYGKEIIV 56
Query: 186 HSRTQEEIH-ELLLSFAEVGATVVRLKGGDPLV-------FGRGGEEMDFLQQKGIQVKV 237
R E + +L A+ V L GDP + R +++GI+V+V
Sbjct: 57 ADREDVEEESDEILEEAK-EKDVALLVVGDPFIATTHSDLRLRA-------KERGIEVRV 108
Query: 238 IPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTL-VVY- 295
I + + + + G+ L G ++ F T R PDS V+
Sbjct: 109 IHNASILNAVGSCSGLQLYKFGKTVTIPFPTEGWR---------------PDSPYDVIKE 153
Query: 296 ---MGLSTL--------------PSLALKLM--------HHGLPPHTPAAAIERGTTPQQ 330
GL TL + A + + + T A + R + Q
Sbjct: 154 NLSRGLHTLCLLDIKVKEPRYMTANEAAEQLLEIEEERKEGVISEDTLAVGVARLGSEDQ 213
Query: 331 RIVFSELKDLADKIGVEELVSP--TLIIIGK 359
+IV L++LA+ + P +L+I GK
Sbjct: 214 KIVAGTLEELAN----YDFGGPLHSLVIPGK 240
>gnl|CDD|235231 PRK04160, PRK04160, diphthine synthase; Provisional.
Length = 258
Score = 47.2 bits (113), Expect = 5e-06
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 130 YLVGTGPGDPDLLTLKAMKVIQKADLLLYD----RLVSNDVLDLVAPNARLLYVGKTAGY 185
Y +G G D +TLK ++ ++ AD + + L+ + L +GK
Sbjct: 3 YFIGLGLYDERDITLKGLEALRNADKVYAEFYTSILMGTTIEKLEE------LIGKEIIV 56
Query: 186 HSRTQEEIH--ELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFL---QQKGIQVKVIPG 240
R E +++L A+ V L GDP+V +D +++GI+V+VI G
Sbjct: 57 LDREDVEQESEKIILEEAK-EKNVAFLTAGDPMV---ATTHVDLRLEAKKRGIEVRVIHG 112
Query: 241 ITAASGIAAELG 252
++ S + G
Sbjct: 113 VSIYSAAISLTG 124
>gnl|CDD|224711 COG1798, DPH5, Diphthamide biosynthesis methyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 260
Score = 46.1 bits (110), Expect = 1e-05
Identities = 58/250 (23%), Positives = 96/250 (38%), Gaps = 31/250 (12%)
Query: 130 YLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRT 189
YLVG G D +TLK ++ ++KAD + + S +L +GK R
Sbjct: 3 YLVGLGLYDEGDITLKGLEAVRKADRVYAEFYTS--ILLGSNLEKLEELIGKEVILLDRE 60
Query: 190 Q-EEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIA 248
EE +L A+ V L GDP+V + +++GI+V+VI G + +
Sbjct: 61 DLEENSRSILDRAK-DKDVALLVAGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAI 119
Query: 249 AELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVA----ENAADPDSTLV--------VYM 296
G+ G ++ F + + P EN TLV YM
Sbjct: 120 GLTGLQNYKFGKTVTLPFPSENFF-----PTSPYDVIKENLERGLHTLVLLDIKEDERYM 174
Query: 297 ----GLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSP 352
L L + L T A + R + + + L++LAD E+ P
Sbjct: 175 TANEALELLLEAEERRGRGVLTEDTLAVVVARAGSGDEVVRAGTLEELAD----EDFGEP 230
Query: 353 --TLIIIGKV 360
+L++ G++
Sbjct: 231 LHSLVVPGRL 240
>gnl|CDD|180320 PRK05948, PRK05948, precorrin-2 methyltransferase; Provisional.
Length = 238
Score = 45.8 bits (109), Expect = 1e-05
Identities = 61/231 (26%), Positives = 98/231 (42%), Gaps = 28/231 (12%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSND-------VLDLVAPNARLL-- 177
G +Y + GPGDP+L+TLK ++++Q A ++ + ++ + ++P L
Sbjct: 4 GTLYGISVGPGDPELITLKGLRLLQSAPVVAFPAGLAGQPGLAEQIIAPWLSPQQIKLPL 63
Query: 178 ---YVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQ 234
YV Q + + + E G V GD + LQ+ Q
Sbjct: 64 YFPYVQDEEQLEQAWQAAA-DQVWHYLEQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQ 122
Query: 235 VKV--IPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTL 292
V + IPG+ + AA LGIPLT + + L + L A AD +
Sbjct: 123 VAIQTIPGVCSPLAAAAALGIPLTLG--SQRLAILPALYH---LEELEQALTWAD----V 173
Query: 293 VVYMGLSTL-PSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLAD 342
VV M +S++ P + L L A+ +ER TTP+Q I + L+D D
Sbjct: 174 VVLMKVSSVYPQVWQWLKARNLLEQ--ASLVERATTPEQVI-YRNLEDYPD 221
>gnl|CDD|233007 TIGR00522, dph5, diphthine synthase. Alternate name: diphthamide
biosynthesis S-adenosylmethionine-dependent
methyltransferase. This protein participates in the
modification of a specific His of elongation factor 2 of
eukarotes and Archaea to diphthamide. The protein was
characterized in Saccharomyces cerevisiae and designated
DPH5 [Protein fate, Protein modification and repair].
Length = 257
Score = 40.6 bits (95), Expect = 6e-04
Identities = 53/246 (21%), Positives = 98/246 (39%), Gaps = 22/246 (8%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSR 188
+YL+G G D + +++K ++ I+KAD + + S L + + GK R
Sbjct: 2 LYLIGLGLYDENDISVKGLEAIKKADEVYAEFYTS--KLLGSSIEEIEEFFGKRVVVLER 59
Query: 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPG---ITAAS 245
+ E + L V L GDP+V + ++KGI+ ++I G +A
Sbjct: 60 SDVEENSFRLIERAKSKDVALLVAGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVC 119
Query: 246 GIAAELGIPLTHRGVANSVRFLT------------GHSRKGGTDPLFVAENAADPDSTLV 293
G+ G+ L G ++ F T +RK G L + + + +
Sbjct: 120 GLT---GLQLYKFGKTATIVFFTDNYRPQTPYNVIKENRKIGLHTLVLLDIHPKENRAMT 176
Query: 294 VYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPT 353
+ GL L K + P T A I R + + + ++++L + E L
Sbjct: 177 IGEGLENLLEEEEKRKTGAITPDTYAVVIARAGSGKPVVKCDKIENLKNYDFGEPLHC-- 234
Query: 354 LIIIGK 359
L+++ K
Sbjct: 235 LVVLAK 240
>gnl|CDD|223390 COG0313, COG0313, Predicted methyltransferases [General function
prediction only].
Length = 275
Score = 36.8 bits (86), Expect = 0.011
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGY 185
G +YLV T G+ +TL+A++V+++ D++ D V+ +L + L+ Y
Sbjct: 5 GTLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVTRKLLSHLGIKTPLI------SY 58
Query: 186 HSRTQEEIHELLLSFAEVGATVVRLK-GGDPLVFGRGGEEMDFLQQKGIQVKVIPG---- 240
H ++E L+ + G +V + G PL+ G E + ++ GI+V +PG
Sbjct: 59 HEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSAL 118
Query: 241 ITA--ASGIAAE 250
ITA ASG+ ++
Sbjct: 119 ITALSASGLPSQ 130
>gnl|CDD|185500 PTZ00175, PTZ00175, diphthine synthase; Provisional.
Length = 270
Score = 36.5 bits (85), Expect = 0.017
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 24/120 (20%)
Query: 130 YLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLL--YVGKTAGYHS 187
Y++G G GD +T+K ++ ++ AD++ + S L+ N L + GK
Sbjct: 4 YIIGLGLGDEKDITVKGLEAVKSADVVYLESYTSI----LINSNKEKLEEFYGKPVIEAD 59
Query: 188 RT--QEEIHELLLSFAEVGATVVRLKGGDPL-------VFGRGGEEMDFLQQKGIQVKVI 238
R +E E+L E V L GDP ++ R ++KGI+V+VI
Sbjct: 60 REMVEEGCDEILEEAKE--KNVAFLVVGDPFCATTHTDLYLRA-------KKKGIEVEVI 110
>gnl|CDD|212509 cd11723, YabN_N, N-terminal S-AdoMet dependent methylase domain of
Bacillus subtilis YabN and related proteins. This
family contains proteins similar to Bacillus subtilis
YabN, which is a fusion of an N-terminal TP-methylase
and a C-terminal MazG-type nucleotide
pyrophosphohydrolase domain. MazG-like NTP-PPases have
been implicated in house-cleaning functions such as
degrading abnormal (d)NTPs. TP-methylases use S-AdoMet
(S-adenosyl-L-methionine or SAM) in the methylation of
diverse substrates. Most members catalyze various
methylation steps in cobalamin (vitamin B12)
biosynthesis, other members like Diphthine synthase and
Ribosomal RNA small subunit methyltransferase I (RsmI)
act on other substrates. The specific function of YabN's
TP-methylase domain is not known.
Length = 220
Score = 35.6 bits (83), Expect = 0.023
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDR 160
+ +VG GPGDPD LTL + ++ AD ++ R
Sbjct: 2 ITIVGLGPGDPDQLTLGVYRALKAAD-KIFLR 32
>gnl|CDD|234672 PRK00164, moaA, molybdenum cofactor biosynthesis protein A;
Reviewed.
Length = 331
Score = 32.4 bits (75), Expect = 0.35
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 189 TQEEIHELLLSFAEVGATVVRLKGGDPLV 217
+ EEI L+ +F +G VRL GG+PL+
Sbjct: 50 SLEEIERLVRAFVALGVRKVRLTGGEPLL 78
>gnl|CDD|219893 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase. This
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate
(TPP) synthesis pathway, TPP is an essential cofactor
for many enzymes.
Length = 246
Score = 32.1 bits (74), Expect = 0.40
Identities = 31/130 (23%), Positives = 46/130 (35%), Gaps = 35/130 (26%)
Query: 168 DLVAPN---ARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEE 224
L+ PN A L G +T E++ E E+GA V +KGG + G
Sbjct: 121 TLITPNLPEAEAL-----TGRKIKTLEDMKEAAKKLLELGAKAVLIKGGH--LEGEEAVV 173
Query: 225 MDFLQQKGIQVKVIP------------GITAASGIAAEL--GIPL----------THRGV 260
+D L G G T ++ IAAEL G+ L +
Sbjct: 174 VDVLYDGG-GFFTFEAPRIPTKNTHGTGCTLSAAIAAELAKGLSLEEAVRKAKEYVTEAI 232
Query: 261 ANSVRFLTGH 270
+++ GH
Sbjct: 233 RDALNLGKGH 242
>gnl|CDD|233967 TIGR02666, moaA, molybdenum cofactor biosynthesis protein A,
bacterial. The model for this family describes
molybdenum cofactor biosynthesis protein A, or MoaA, as
found in bacteria. It does not include the family of
probable functional equivalent proteins from the
archaea. MoaA works together with MoaC to synthesize
precursor Z from guanine [Biosynthesis of cofactors,
prosthetic groups, and carriers, Molybdopterin].
Length = 334
Score = 31.4 bits (72), Expect = 0.65
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 189 TQEEIHELLLSFAEVGATVVRLKGGDPLV 217
T EEI L+ +F +G VRL GG+PL+
Sbjct: 44 TFEEIERLVRAFVGLGVRKVRLTGGEPLL 72
>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, 90 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 90 kDa
ribosomal protein S6 kinase (RSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. RSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family.
They are activated by signaling inputs from
extracellular regulated kinase (ERK) and
phosphoinositide dependent kinase 1 (PDK1). ERK
phosphorylates and activates the CTD of RSK, serving as
a docking site for PDK1, which phosphorylates and
activates the NTD, which in turn phosphorylates all
known RSK substrates. RSKs act as downstream effectors
of mitogen-activated protein kinase (MAPK) and play key
roles in mitogen-activated cell growth, differentiation,
and survival. Mammals possess four RSK isoforms (RSK1-4)
from distinct genes. RSK proteins are also referred to
as MAP kinase-activated protein kinases (MAPKAPKs),
p90-RSKs, or p90S6Ks.
Length = 318
Score = 31.3 bits (71), Expect = 0.70
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 41/138 (29%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPN-----ARLLYVGK 181
G V+LV G PD L AMKV++KA L + DR+ + D++A +L Y +
Sbjct: 10 GKVFLVRKITG-PDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQ 68
Query: 182 TAG--YHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIP 239
T G Y L+L F L+GGD +F R +E+ F ++ VK
Sbjct: 69 TEGKLY----------LILDF---------LRGGD--LFTRLSKEVMFTEE---DVKFYL 104
Query: 240 GITAASGIAAELGIPLTH 257
AEL + L H
Sbjct: 105 ---------AELALALDH 113
>gnl|CDD|237364 PRK13361, PRK13361, molybdenum cofactor biosynthesis protein A;
Provisional.
Length = 329
Score = 31.1 bits (71), Expect = 0.94
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 189 TQEEIHELLLSFAEVGATVVRLKGGDPLV 217
+ EE+ L +F E+G +RL GG+PLV
Sbjct: 46 SLEELAWLAQAFTELGVRKIRLTGGEPLV 74
>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal. Members
of this family are found in the N terminal region of
cytochrome B561, as well as in various other putative
uncharacterized proteins.
Length = 559
Score = 31.3 bits (71), Expect = 0.97
Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 19/128 (14%)
Query: 8 SFSSSSSPLSSACNSIKQFNPISPKSFICSLH--FNDTSSSSSSSSPFTEKHSFERYQRD 65
S + S + + K P++ + H F+D+ S S+S S S +
Sbjct: 108 SQFTVVSQAKKSPPASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSPSSTIQQSPQ 167
Query: 66 QWVYSSLQHNRPEPTSPS---------VSLDADSTRRNDIALQLP--------ELKKLLQ 108
+ SPS S + + R + AL+ + K L
Sbjct: 168 LTPSNKPASPSSSYQSPSYSSSLGPVNSSGNRSNLRSSPWALRSSGDKKDITTDEKYLET 227
Query: 109 VLREKREE 116
L E EE
Sbjct: 228 FLAEVDEE 235
>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase. Serine/Threonine Kinases
(STKs), Rho-associated coiled-coil containing protein
kinase (ROCK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The ROCK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. ROCK is also referred to as Rho-associated
kinase or simply as Rho kinase. It contains an
N-terminal extension, a catalytic kinase domain, and a
long C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain. It is activated via interaction with Rho GTPases
and is involved in many cellular functions including
contraction, adhesion, migration, motility,
proliferation, and apoptosis. The ROCK subfamily
consists of two isoforms, ROCK1 and ROCK2, which may be
functionally redundant in some systems, but exhibit
different tissue distributions. Both isoforms are
ubiquitously expressed in most tissues, but ROCK2 is
more prominent in brain and skeletal muscle while ROCK1
is more pronounced in the liver, testes, and kidney.
Studies in knockout mice result in different phenotypes,
suggesting that the two isoforms do not compensate for
each other during embryonic development.
Length = 370
Score = 30.9 bits (70), Expect = 0.99
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 57 HSFERYQRDQWVYSSLQHNRPEPTSPSVSLDADSTRRNDI 96
H F ++ DQW + +++ P P +S D D++ +DI
Sbjct: 304 HPF--FKNDQWTFDNIRETVA-PVVPELSSDIDTSNFDDI 340
>gnl|CDD|184956 PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose
2'-O-methyltransferase; Provisional.
Length = 287
Score = 30.6 bits (69), Expect = 1.2
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGY 185
G +Y+V T G+ +T +A++V+Q DL+ D + +L A NARL
Sbjct: 12 GQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFAINARLF------AL 65
Query: 186 HSRTQEEIHELLLSFAEVGATVVRLK-GGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAA 244
H +++ E LL+ + G + + G PL+ G + ++ GI+V +PG AA
Sbjct: 66 HDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAA 125
Query: 245 SGIAAELGIP 254
+ G+P
Sbjct: 126 ITALSAAGLP 135
>gnl|CDD|220078 pfam08939, DUF1917, Domain of unknown function (DUF1917). This
domain is found in various hypothetical and basophilic
leukaemia proteins. It has no known function.
Length = 237
Score = 30.2 bits (68), Expect = 1.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 315 PHTPAAAIERGTTPQQRIVFSELKDLADKIGV 346
P + AA+ER TP+++ + ++ LA + GV
Sbjct: 112 PGSSQAALERLLTPERKELEQDIFRLARETGV 143
>gnl|CDD|215513 PLN02951, PLN02951, Molybderin biosynthesis protein CNX2.
Length = 373
Score = 30.1 bits (68), Expect = 2.0
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 173 NARLLY------VGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLV 217
N R Y V T H +Q+EI L F G +RL GG+P +
Sbjct: 69 NLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTL 119
>gnl|CDD|225449 COG2896, MoaA, Molybdenum cofactor biosynthesis enzyme [Coenzyme
metabolism].
Length = 322
Score = 29.9 bits (68), Expect = 2.2
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 191 EEIHELLLSFAEVGATVVRLKGGDPLV 217
EEI L+ +FAE+G VRL GG+PL+
Sbjct: 46 EEIRRLVRAFAELGVEKVRLTGGEPLL 72
>gnl|CDD|220510 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria
(DUF2236). This domain, found in various hypothetical
bacterial proteins, has no known function. This family
contains a highly conserved arginine and histidine that
may be active site residues for an as yet unknown
catalytic activity.
Length = 241
Score = 29.6 bits (67), Expect = 2.2
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 264 VRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHT 317
VR + H+R GT P NA DP+ L V+ S A + + L
Sbjct: 72 VRLM--HARVRGTLPDGRPYNALDPELLLWVHATFSASFLDAYERLGGPLTDAE 123
>gnl|CDD|223112 COG0034, PurF, Glutamine phosphoribosylpyrophosphate
amidotransferase [Nucleotide transport and metabolism].
Length = 470
Score = 29.9 bits (68), Expect = 2.4
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 4/23 (17%)
Query: 237 VIP----GITAASGIAAELGIPL 255
VIP G AA G A GIP
Sbjct: 287 VIPVPDSGRPAAIGYARASGIPY 309
>gnl|CDD|224692 COG1778, COG1778, Low specificity phosphatase (HAD superfamily)
[General function prediction only].
Length = 170
Score = 29.2 bits (66), Expect = 2.7
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 220 RGGEEMDFLQQKGIQVKVIPGITAASGI--AAELGIPLTHRGVAN 262
R G + L + GI+V +I G + A +LGI ++G+++
Sbjct: 39 RDGHGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGISD 83
>gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily. Radical SAM
proteins catalyze diverse reactions, including unusual
methylations, isomerisation, sulphur insertion, ring
formation, anaerobic oxidation and protein radical
formation.
Length = 165
Score = 29.0 bits (65), Expect = 2.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 185 YHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEE 224
+ EEI E A +G VV L GG+PL+ E
Sbjct: 25 GRELSPEEILEEAKELARLGVEVVILTGGEPLLLPDLVEL 64
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 29.3 bits (67), Expect = 3.0
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 303 SLALKLMHHGLPPHTPAAA--------IERGTTPQQRIVFSELKDLADKIGVEE 348
++AL + HG+ A I + P + VF +D+ D+I EE
Sbjct: 41 AVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNGEDVTDEIRTEE 94
>gnl|CDD|99788 cd06191, FNR_iron_sulfur_binding, Iron-sulfur binding Ferredoxin
Reductase (FNR) proteins combine the FAD and NAD(P)
binding regions of FNR with a C-terminal iron-sulfur
binding cluster domain. FNR was intially identified as a
chloroplast reductase activity catalyzing the electron
transfer from reduced iron-sulfur protein ferredoxin to
NADP+ as the final step in the electron transport
mechanism of photosystem I. FNR transfers electrons from
reduced ferredoxin to FAD (forming FADH2 via a
semiquinone intermediate) and then transfers a hydride
ion to convert NADP+ to NADPH. FNR has since been shown
to utilize a variety of electron acceptors and donors
and has a variety of physiological functions including
nitrogen assimilation, dinitrogen fixation, steroid
hydroxylation, fatty acid metabolism, oxygenase
activity, and methnae assimilation in a variety of
organisms. FNR has an NAD(P)-binding sub-domain of the
alpha/beta class and a discrete (usually N-terminal)
flavin sub-domain which vary in orientation with respect
to the NAD(P) binding domain. The N-terminal moeity may
contain a flavin prosthetic group (as in flavoenzymes)
or use flavin as a substrate. Because flavins such as
FAD can exist in oxidized, semiquinone (one- electron
reduced), or fully reduced hydroquinone forms, FNR can
interact with one and 2 electron carriers. FNR has a
strong preference for NADP(H) vs NAD(H).
Length = 231
Score = 29.0 bits (65), Expect = 3.6
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 265 RFLTGHSRKGGTDPLFVAEN-----AADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPA 319
+L H + G T + + P L+V G P +A+ P +
Sbjct: 74 NYLREHIQPGMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAPESDF 133
Query: 320 AAIERGTTPQQRIVFSELKDLADK 343
I TP I EL++LADK
Sbjct: 134 TLIHSARTPADMIFAQELRELADK 157
>gnl|CDD|233285 TIGR01134, purF, amidophosphoribosyltransferase. Alternate name:
glutamine phosphoribosylpyrophosphate (PRPP)
amidotransferase [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 442
Score = 29.1 bits (66), Expect = 3.8
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 237 VIP----GITAASGIAAELGIPL 255
VIP G +AA G A GIP
Sbjct: 277 VIPVPDSGRSAALGFAQASGIPY 299
>gnl|CDD|117527 pfam08961, DUF1875, Domain of unknown function (DUF1875). The MIT
domain, found in Nuclear receptor-binding factor 2, has
no known function.
Length = 243
Score = 28.6 bits (63), Expect = 4.4
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 44 SSSSSSSSPFTEKHSFERY-----QRDQWVYSSLQHNRP-EPTSPSVSLDADSTRRNDIA 97
S S SP TEK E D +Y Q P EP S + D T + A
Sbjct: 69 SPLSQKYSPSTEKCLPEIQGIFDRDPDTLLYLLQQKGEPPEPCIGSKAPKDDKTIIEEQA 128
Query: 98 LQLPELKKLLQVL-----REKREEDRVGAEK 123
++ +LK+ ++ L R ++E ++ AEK
Sbjct: 129 TKIADLKRHVEFLVAENERLRKENKQLKAEK 159
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 28.9 bits (65), Expect = 4.6
Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 8 SFSSSSSPLSSACNSIKQFNPISPK-SFICSLHFNDTSSS---SSSSSPFTEKHSFERYQ 63
+ SSSSS S+ S P K S LH SS S P Q
Sbjct: 14 ASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAATTQ 73
Query: 64 RDQW 67
Q
Sbjct: 74 TPQL 77
>gnl|CDD|238574 cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine
phosphate kinase (HMPP-kinase) catalyzes two consecutive
phosphorylation steps in the thiamine phosphate
biosynthesis pathway, leading to the synthesis of
vitamin B1. The first step is the phosphorylation of the
hydroxyl group of HMP to form
4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate
(HMP-P) and then the phophorylation of HMP-P to form
4-amino-5-hydroxymethyl-2-methyl-pyrimidine
pyrophosphate (HMP-PP), which is the substrate for the
thiamine synthase coupling reaction.
Length = 242
Score = 28.6 bits (65), Expect = 4.9
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 32/121 (26%)
Query: 168 DLVAPN---ARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGG--------DPL 216
L+ PN A LL G T+E++ + + +GA V +KGG D L
Sbjct: 130 TLITPNLPEAELL-----TGLEIATEEDMMKAAKALLALGAKAVLIKGGHLPGDEAVDVL 184
Query: 217 VFGRGGEEMDFLQQKGIQVKVIP------GITAASGIAAEL--GIPLTHRGVANSVRFLT 268
G G E + ++ G T +S IAA L G+ L V + ++T
Sbjct: 185 YDGGGFFEFE-------SPRIDTKNTHGTGCTLSSAIAANLAKGLSL-EEAVREAKEYVT 236
Query: 269 G 269
Sbjct: 237 Q 237
>gnl|CDD|211974 TIGR04251, SCM_rSAM_ScmF, SynChlorMet cassette radical SAM/SPASM
protein ScmF. A biosynthesis cassette found in
Syntrophobacter fumaroxidans MPOB, Chlorobium limicola
DSM 245, Methanocella paludicola SANAE, and delta
proteobacterium NaphS2 contains two PqqE-like radical
SAM/SPASM domain proteins, a PqqD homolog, and a
conserved hypothetical protein. These components suggest
modification of a ribosomally produced peptide
precursor, but the precursor has not been identified. Of
the two PqqE homologs of the cassette, this family is
the more distant in sequence.
Length = 353
Score = 28.7 bits (64), Expect = 5.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 203 VGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKV 237
+G T V+L GG+PL+ GE ++ + + +Q+ V
Sbjct: 52 LGLTSVKLTGGEPLLHPAIGEILECIGENNLQLSV 86
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 28.2 bits (63), Expect = 5.8
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 116 EDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNAR 175
E + A P +VG+G + +Q+ DL+L D + A R
Sbjct: 36 EQALRAAGGYPAGPTIVGSGARTALPHYRPDDRRLQEGDLVLVD--LGGVYDGYHADLTR 93
Query: 176 LLYVGKTAGYHSR---TQEEIHELLLSFAEVGAT 206
+G+ + E E L+ G T
Sbjct: 94 TFVIGEPSDEQRELYEAVREAQEAALAALRPGVT 127
>gnl|CDD|183512 PRK12412, PRK12412, pyridoxal kinase; Reviewed.
Length = 268
Score = 28.4 bits (63), Expect = 5.8
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 169 LVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRG------G 222
+V PN L + +G + E++ E +GA V +KGG L G
Sbjct: 135 VVTPN--LFEAYQLSGVKINSLEDMKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDG 192
Query: 223 EEMDFLQQKGIQVKVI--PGITAASGIAAEL--GIPLTHRGVANSVRFLTGHSR 272
E D L+ + I G T ++ I AEL G P+ V + F+T R
Sbjct: 193 ETFDLLESEKIDTTNTHGAGCTYSAAITAELAKGKPVK-EAVKTAKEFITAAIR 245
>gnl|CDD|184974 PRK15012, PRK15012, menaquinone-specific isochorismate synthase;
Provisional.
Length = 431
Score = 28.7 bits (64), Expect = 6.4
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 172 PNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEE 224
P R Y G +AGY S Q E L S A+V VVRL G +V G E+
Sbjct: 362 PFTREWYAG-SAGYLSLQQSEFCVSLRS-AKVSGNVVRLYAGAGIVRGSDPEQ 412
>gnl|CDD|237915 PRK15123, PRK15123, lipopolysaccharide core heptose(I) kinase RfaP;
Provisional.
Length = 268
Score = 28.0 bits (63), Expect = 7.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 312 GLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEEL 349
G+ T A ERG+ P R F +DLA I +E+
Sbjct: 89 GVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDY 126
>gnl|CDD|132771 cd06861, PX_Vps5p, The phosphoinositide binding Phox Homology
domain of yeast sorting nexin Vps5p. The PX domain is
a phosphoinositide (PI) binding module present in many
proteins with diverse functions. Sorting nexins (SNXs)
make up the largest group among PX domain containing
proteins. They are involved in regulating membrane
traffic and protein sorting in the endosomal system.
The PX domain of SNXs binds PIs and targets the protein
to PI-enriched membranes. SNXs differ from each other
in PI-binding specificity and affinity, and the
presence of other protein-protein interaction domains,
which help determine subcellular localization and
specific function in the endocytic pathway. Vsp5p is
the yeast counterpart of human SNX1 and is part of the
retromer complex, which functions in the
endosome-to-Golgi retrieval of vacuolar protein sorting
receptor Vps10p, the Golgi-resident membrane protein
A-ALP, and endopeptidase Kex2. The PX domain of Vps5p
binds phosphatidylinositol-3-phosphate (PI3P). Similar
to SNX1, Vps5p contains a Bin/Amphiphysin/Rvs (BAR)
domain, which detects membrane curvature, C-terminal to
the PX domain. Both domains have been shown to
determine the specific membrane-targeting of SNX1.
Length = 112
Score = 26.9 bits (60), Expect = 7.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 46 SSSSSSPFTEKHSFE---RYQRDQWVYSSLQHNRP 77
+ ++SP E SF RY+ +W+Y LQ+N P
Sbjct: 24 RTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHP 58
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 28.1 bits (62), Expect = 8.7
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 33 SFICSLHFNDTSSSSSSSSPFTEKHSFERYQRDQWVYSSLQHNRPEP 79
SF+ F S ++P S+ + W ++ LQH P P
Sbjct: 495 SFLTGQLFQ----SCVEAAPTQLGDSWCSLEHILWPFTRLQHEGPPP 537
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 27.6 bits (62), Expect = 8.9
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 12/44 (27%)
Query: 99 QLPELKKLLQ------------VLREKREEDRVGAEKCGPGNVY 130
L EL+KL VL+ ++ V EK G N Y
Sbjct: 13 TLKELEKLAPKVKGISSMSVKEVLQSLVDDGLVRTEKIGTSNYY 56
>gnl|CDD|224309 COG1391, GlnE, Glutamine synthetase adenylyltransferase
[Posttranslational modification, protein turnover,
chaperones / Signal transduction mechanisms].
Length = 963
Score = 28.1 bits (63), Expect = 9.0
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 58 SFERYQRDQ---WVYSSLQHNRPEPTSPSVSLDADSTRRNDIALQLPELKKLLQVLREKR 114
+F +YQR++ W + +L R P + ++ R I + KL + E R
Sbjct: 779 AFAKYQREEAWTWEHQALTRARAIAGDPELGARFEAIRAE-ILTYPRDGAKLKTEVEEMR 837
Query: 115 EEDRVGAEKCGPGNVYL 131
E+ R + L
Sbjct: 838 EKMRAELGRPPRDAFDL 854
>gnl|CDD|218647 pfam05591, DUF770, Protein of unknown function (DUF770). This
family consists of several proteins of unknown function
from various bacterial species.
Length = 159
Score = 27.1 bits (61), Expect = 9.6
Identities = 13/18 (72%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Query: 96 IALQLPELKKLLQVLREK 113
IA Q+PELKKLL+ LRE
Sbjct: 105 IARQVPELKKLLE-LREA 121
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.381
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,616,906
Number of extensions: 1958609
Number of successful extensions: 2414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2355
Number of HSP's successfully gapped: 96
Length of query: 381
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 282
Effective length of database: 6,546,556
Effective search space: 1846128792
Effective search space used: 1846128792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)