RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016852
(381 letters)
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH;
2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Length = 294
Score = 370 bits (952), Expect = e-128
Identities = 110/240 (45%), Positives = 155/240 (64%), Gaps = 1/240 (0%)
Query: 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
G+V LVG GPGDP LLTL+A ++Q+A++++YDRLV+ +++ L+ + + +YVGK G+
Sbjct: 24 AGSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGH 83
Query: 186 HSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAAS 245
HS QEEI+ELL+ A VVRLKGGDP +FGRG EE++ L + G+ +V+PG+TAAS
Sbjct: 84 HSLPQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAAS 143
Query: 246 GIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLA 305
G + GIPLTHR +A S F+TGH + G L A TLV YMGL L +A
Sbjct: 144 GCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDLDW-AGLARGKQTLVFYMGLGNLAEIA 202
Query: 306 LKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLSP 365
+L+ HGL TPAA + +GT Q++ L +L +L PTLI++G+VV+L
Sbjct: 203 ARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVALFA 262
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis,
cobalamin, SAM, SAH, uroporphyrin methyltransferase;
HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP:
c.90.1.1
Length = 280
Score = 366 bits (941), Expect = e-127
Identities = 93/240 (38%), Positives = 133/240 (55%)
Query: 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
G+V+LVG GPGDP LLTL A +++AD++++D LV+ D L L P A L + GK G
Sbjct: 14 KGSVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGGK 73
Query: 186 HSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAAS 245
S Q +I L+ A G V+RLKGGDP VFGRGGEE L + + +++PGITA
Sbjct: 74 PSPKQRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGI 133
Query: 246 GIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLA 305
G A GIP+THR V ++V FLTGH G + A +V+YM + + ++
Sbjct: 134 GGLAYAGIPVTHREVNHAVTFLTGHDSSGLVPDRINWQGIASGSPVIVMYMAMKHIGAIT 193
Query: 306 LKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLSP 365
L+ G P P A + TPQQ ++ + L + L P ++++G+VV L
Sbjct: 194 ANLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVRLRA 253
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: c.90.1.1
Length = 235
Score = 347 bits (893), Expect = e-120
Identities = 100/239 (41%), Positives = 133/239 (55%), Gaps = 15/239 (6%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G VYLVG G G P+ LTLKA++V++ A+++L+DRLV VL L L+ VGK
Sbjct: 3 GKVYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVHPGVLALA--KGELVPVGKEGYGG 60
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
QE I L++ A G V RLKGGDP+VFGRGGEE L++ GI +V+PG+T+A G
Sbjct: 61 KTPQEAITARLIALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVG 120
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
+ LG+PLTHRG+A S TGH TLV+ M L TL L
Sbjct: 121 ALSALGLPLTHRGLARSFAVATGHD----------PALPLPRADTLVLLMPLHTLGGLKE 170
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLSP 365
+L+ PP TP A + R P + + ++DL E L SP L+++GKVV L
Sbjct: 171 RLLERF-PPETPLALLARVGWPGEAVRLGRVEDLPGL--GEGLPSPALLVVGKVVGLYG 226
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif,
SAM, NAD, phosphoserine,
transferase/oxidoreductase/lyase complex; HET: SEP PGE
SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11
c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Length = 457
Score = 353 bits (907), Expect = e-119
Identities = 121/255 (47%), Positives = 161/255 (63%), Gaps = 5/255 (1%)
Query: 111 REKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLV 170
E G V LVG GPGD LLTLK ++ IQ+AD+++YDRLVS+D+++LV
Sbjct: 200 VNATTERLFSEPLDHRGEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLV 259
Query: 171 APNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQ 230
+A ++VGK AGYH QEEI+++LL A+ G VVRLKGGDP +FGRGGEE++ L
Sbjct: 260 RRDADRVFVGKRAGYHCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCH 319
Query: 231 KGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDS 290
GI V+PGITAASG +A GIPLTHR A SVR +TGH + GG EN A
Sbjct: 320 AGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGELDW---ENLAAEKQ 376
Query: 291 TLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELV 350
TLV YMGL+ ++ KL+ G+ P A +E GT+ +QR+V L L + +++
Sbjct: 377 TLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGEL--AQQVE 434
Query: 351 SPTLIIIGKVVSLSP 365
SP LII+G+VV+L
Sbjct: 435 SPALIIVGRVVALRD 449
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 1.97A
{Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Length = 239
Score = 340 bits (875), Expect = e-118
Identities = 107/239 (44%), Positives = 148/239 (61%), Gaps = 13/239 (5%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G VYLVG GPGDP+LLTLKA +++++A ++LYDRLV VL L +YVGK G
Sbjct: 1 GRVYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVDERVLALA--PGEKVYVGKEEG-E 57
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
S QEEIH LLL A VVRLKGGDP+VFGRGGEE+ FL + G+ V+V+PG+T+
Sbjct: 58 SEKQEEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSL-- 115
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
+A+ G+PLTHRG+A+ ++G GG L A TLVV MG+ +A
Sbjct: 116 LAS--GLPLTHRGLAHGFAAVSGVLEGGGYPDL---RPFARVP-TLVVLMGVGRRVWIAK 169
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLSP 365
+L+ G P P +ER +TP++R V + L+++A+ E+ P L I+G+VV +
Sbjct: 170 ELLRLGRDPREPTLFVERASTPKERRVHARLEEVAEG--KVEVRPPALWILGEVVRVFA 226
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase,
cobalamin biosynth methyltransferase; HET: SAH; 2.40A
{Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Length = 285
Score = 285 bits (732), Expect = 2e-95
Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 8/244 (3%)
Query: 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTA 183
+Y++G GPGDPDL+T+K +K++Q+AD++LY D LVS D++ P A +L
Sbjct: 19 SHMKLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKT---- 74
Query: 184 GYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA 243
EE+ +L G VVR+ GDP ++G E+M L+++G+ ++++PG+T+
Sbjct: 75 --AGMHLEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTS 132
Query: 244 ASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPS 303
AA LT + +V R + + + A T+ +++ +
Sbjct: 133 VFAAAAAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAK-HKCTIALFLSSTLTKK 191
Query: 304 LALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
+ + ++ G TP + + T P ++IV + +KDL D + + +I+ G +
Sbjct: 192 VMKEFINAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMILAGWALDP 251
Query: 364 SPFW 367
+ W
Sbjct: 252 ATPW 255
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid; 2.49A
{Clostridium difficile}
Length = 253
Score = 280 bits (720), Expect = 4e-94
Identities = 61/238 (25%), Positives = 117/238 (49%), Gaps = 8/238 (3%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGY 185
V+ VG GPGD +L+TLK K++ AD+++Y LV+ ++L+ + ++
Sbjct: 5 NKVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQIHNS------ 58
Query: 186 HSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAAS 245
+EI +++ E +VVRL+ GD ++G E+++ L + I PG+++
Sbjct: 59 AHMDLQEIIDVMREGIENNKSVVRLQTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFL 118
Query: 246 GIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLA 305
G A+ LG+ T ++ SV R + + A +++V+++ + + +
Sbjct: 119 GAASSLGVEYTVPEISQSVIITRMEGRTPVPEKESIQSYAK-HQTSMVIFLSVQEIEKVV 177
Query: 306 LKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
KL+ G P TP A I + T ++IV L D+A K+ + LI++G+ +
Sbjct: 178 SKLLEGGYPKDTPIAVIYKATWADEKIVKGTLSDIAVKVKENNINKTALIMVGRFLGE 235
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A
{Rhodobacter capsulatus} PDB: 3nei_A
Length = 264
Score = 277 bits (711), Expect = 2e-92
Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 9/243 (3%)
Query: 125 GPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTA 183
V+ +G GPG DL+T++ +I + LY LV +L P A+++
Sbjct: 2 SHMTVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAP-- 59
Query: 184 GYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITA 243
+ + I + + G V RL GD ++ GE++ L+ I V PG+ +
Sbjct: 60 ----MSLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPS 115
Query: 244 ASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPS 303
+ AA LG LT GVA SV R EN A + L +++ + L
Sbjct: 116 FAAAAATLGAELTLPGVAQSVILTRTSGRASAMPAGETLENFARTGAVLAIHLSVHVLDE 175
Query: 304 LALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
+ KL+ H P A + R + P QR+V + L L +G EL LI++G+ ++
Sbjct: 176 VVQKLVPH-YGEDCPVAIVWRASWPDQRVVRATLATLQTSLG-AELERTALILVGRSLAT 233
Query: 364 SPF 366
F
Sbjct: 234 EDF 236
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SAH; 2.00A {Thermus
thermophilus} PDB: 2zvc_A*
Length = 295
Score = 234 bits (599), Expect = 3e-75
Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 39/262 (14%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G ++LVG GPGD LT +A + ++ A++++ + L+ L GK
Sbjct: 2 GELFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTY----VKLLEE--MGLLAGKEVVRK 55
Query: 187 SRTQE-EIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKG------------- 232
T+E + E L A G V + GGDP ++G ++ ++++G
Sbjct: 56 GMTEELDRAEEALERALSGQRVALVSGGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGR 115
Query: 233 -------IQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENA 285
+ + VIPG+TAA+ +A+ LG PL H S+ L A
Sbjct: 116 FAGEEGEVFLAVIPGVTAANAVASLLGSPLAHDTCLISLSDLLTPWPLIERR----LHAA 171
Query: 286 ADPDSTLVVYMGLSTL----PSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLA 341
D +V+Y S + +++ P TPAA ++ +Q + + L+ L
Sbjct: 172 GQGDFVVVLYNPQSKRRDWQLRKSAEILLEYRPKETPAALVKSAYRKRQEVALTTLEGLR 231
Query: 342 DKIGVEELVSPTLIIIGKVVSL 363
+ E T ++IG S
Sbjct: 232 E----AEAGMLTTVVIGNRQSR 249
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole,
S-adenosylmethi transferase; HET: SAH; 2.00A
{Chlorobaculum tepidum} PDB: 2e0k_A*
Length = 259
Score = 225 bits (575), Expect = 3e-72
Identities = 55/268 (20%), Positives = 96/268 (35%), Gaps = 31/268 (11%)
Query: 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSND--------------VLDLVA 171
G++ V GPGDP L+T+KA+ +++AD++ Y VS LD
Sbjct: 4 QGSIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDILKEFDLDPSK 63
Query: 172 PNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQK 231
L+ + ++ G + + + + G V + GD + ++ ++
Sbjct: 64 LRGMLVPMSRSRGAAEASYAANYASMAEEVQAGRRVAVVSVGDGGFYSTASAIIERARRD 123
Query: 232 GIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDST 291
G+ + PGI A + G+PL + +SV L G E A ST
Sbjct: 124 GLDCSMTPGIPAFIAAGSAAGMPLALQS--DSVLVLAQIDEIG------ELERALVTHST 175
Query: 292 LVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVS 351
+VV + L L + P E+ + I D + +
Sbjct: 176 VVVMKLSTVRDELVSFLERYA----KPFLYAEKVGMAGEFIT-----MEVDALRSRAIPY 226
Query: 352 PTLIIIGKVVSLSPFWPISSKEATCLAE 379
+L++ S P +SK A L
Sbjct: 227 FSLLVCSPHCRQSTLSPFASKLAAALEH 254
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin,
methyltransferase, transfera; HET: SAH; 2.22A
{Rhodobacter capsulatus}
Length = 251
Score = 210 bits (537), Expect = 1e-66
Identities = 58/246 (23%), Positives = 93/246 (37%), Gaps = 26/246 (10%)
Query: 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKAD-LLLYDRLVSNDVLDLVAPNARLLYVGKTAG 184
G V + G GPG DL+T + + +A ++ Y V +AP +
Sbjct: 8 SGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYV-----ARIAP---REGLTLHPT 59
Query: 185 YHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQK----GIQVKVIPG 240
+ R + + L A G VV + GDP VF + L+ G +++++PG
Sbjct: 60 DN-RVELDRATHALEMAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPG 118
Query: 241 ITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLS- 299
ITA AA G PL H A ++ K +AA D + Y S
Sbjct: 119 ITAMLAAAAAAGAPLGHDFCAINLSDNL----KPFEILEKRLRHAARGDFAMAFYNPRSK 174
Query: 300 ---TLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLII 356
+ L+++ P TTP+Q I EL+D E T+++
Sbjct: 175 SRPHQFTRVLEILREECEPGRLILFARAVTTPEQAISVVELRDATP----EMADMRTVVL 230
Query: 357 IGKVVS 362
+G +
Sbjct: 231 VGNAAT 236
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine,
transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii}
PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A*
2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A*
2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A*
...
Length = 265
Score = 185 bits (471), Expect = 1e-56
Identities = 45/246 (18%), Positives = 87/246 (35%), Gaps = 20/246 (8%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSR 188
+Y +G G D +T+K +++ +K D + + S ++ +GK SR
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTS--LMAGTTLGRIQRLIGKEIRVLSR 60
Query: 189 T--QEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
+ ++L A+ V L GDPLV E ++ G++ VI + S
Sbjct: 61 EDVELNFENIVLPLAK-ENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSA 119
Query: 247 IAAELGIPLTHRGVANSVRFLTGHS------------RKGGTDPLFVAENAADPDSTLVV 294
+ G+ + G + +V + G+ + G L + A+ +
Sbjct: 120 VGI-TGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTA 178
Query: 295 YMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTL 354
+ L + T + R + I +KDL + + L
Sbjct: 179 NEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPP--HIL 236
Query: 355 IIIGKV 360
I+ GK+
Sbjct: 237 IVPGKL 242
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE;
1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Length = 268
Score = 171 bits (434), Expect = 4e-51
Identities = 37/241 (15%), Positives = 89/241 (36%), Gaps = 14/241 (5%)
Query: 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
+ VG G D +++K ++ +++AD + + S L + +
Sbjct: 12 MSLLTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTS--KLLSSIEEMEEFFGKRVVEL 69
Query: 186 HSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAAS 245
EE L+ A+ +VV L GDP+V ++KG++ ++I G + ++
Sbjct: 70 ERSDLEENSFRLIERAK-SKSVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGASIST 128
Query: 246 GIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVV----YMGLSTL 301
+ G+ G + +V + + + N + TL+ ++
Sbjct: 129 AVCGLTGLHNYRFGKSATVSWHRSQTPVN-----VIKANRSIDAHTLLFLDLHPEPMTIG 183
Query: 302 PSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVV 361
++ + A I R + ++ + L++L + L ++++ K +
Sbjct: 184 HAVENLIAEDAQMKDLYAVGIARAGSGEEVVKCDRLENLKKIDFGKPL--HVMVVLAKTL 241
Query: 362 S 362
Sbjct: 242 H 242
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 232
Score = 167 bits (425), Expect = 4e-50
Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 26/228 (11%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSN----------DVLDLVAPNARL 176
G + VG GPGD +LLTL+A+ V++ ++ R S D+L R+
Sbjct: 3 GKLIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRI 62
Query: 177 LY----VGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKG 232
L + + ++ + E G V + GDP ++ ++ G
Sbjct: 63 LDPVFPMTDDRDELESHWDSAARMVAAELEDGRDVAFITLGDPSIYSTFSYLQQRIEDMG 122
Query: 233 IQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTL 292
+ +++PG+T+ + AA G L V + + E
Sbjct: 123 FKTEMVPGVTSFTACAATAGRTLVEGDEILLV--VPRVDDR--------FERVLRDVDAC 172
Query: 293 VVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDL 340
V+ + ++ + + +
Sbjct: 173 VIMKTSRHGRRAMEVVESDPR--GKDVVSVANCSMDDEVVERGFASGG 218
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic
parasitic protozoan, structural genomics, decode, UW,
SBRI; 2.49A {Entamoeba histolytica}
Length = 292
Score = 163 bits (413), Expect = 8e-48
Identities = 45/264 (17%), Positives = 85/264 (32%), Gaps = 37/264 (14%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSR 188
+Y++G G D +T++ ++ ++ DL+ + + + + GK R
Sbjct: 23 LYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTA---ILQCDVAKLEEFYGKKVIIGDR 79
Query: 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIA 248
E + V L GD + Q+ GI+VKVI + + I
Sbjct: 80 DLVETEADQILEPAKTKNVALLVVGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMNAIG 139
Query: 249 AELGIPLTHRGVANSVRFLTGHSRKG---------------------------GTDPLFV 281
G+ L G SV F + H R + +
Sbjct: 140 C-SGLQLYRFGQTVSVCFWSEHWRPSSYYPKIKINRDNNMHTLVLLDIKVKERSEESIIK 198
Query: 282 AENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLA 341
+ +P + + + L + + T + R Q+IV+ ++KDL
Sbjct: 199 GRDIFEPPRYMTINQCIEQLLEVEKEQHLGVYDEDTMVVGMARVACADQKIVYGKMKDLL 258
Query: 342 DKIGVEELVSP--TLIIIGKVVSL 363
+ +P L+I V
Sbjct: 259 H----YDFGAPMHCLLIPAPQVDD 278
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD,
struc genomics, SAM, S-adenosylmethionine, MCSG; HET:
MSE SAM; 1.60A {Corynebacterium diphtheriae}
Length = 251
Score = 157 bits (398), Expect = 5e-46
Identities = 50/243 (20%), Positives = 90/243 (37%), Gaps = 43/243 (17%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY-------DRLVS--NDVLDLVAPNARLL 177
+Y++G G G P+ LTL+A+ ++ A ++ L++ ++D AP +
Sbjct: 3 RTIYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLLALRQKIVDTHAPGTPIY 62
Query: 178 -------------YVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGG-- 222
Y + +H+ + + V L GDP ++
Sbjct: 63 AVTDPERDRNPDNYEEEVRRWHAERAHLLASTIRERTPDDGAVAFLVWGDPSLYDSTLRI 122
Query: 223 -EEMDFLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFV 281
E M L+ VKVIPGITA + AE GI + G ++ TG +
Sbjct: 123 IEHMRNLEDLHADVKVIPGITAVQVLTAEHGILINRIG--EAIHITTGRNL--------P 172
Query: 282 AENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLA 341
+A D + +V+ G + +A HT T QQ + + ++
Sbjct: 173 ETSAKDRRNCVVMLDGKTAWQDVA--------TEHTYMWWGAFLGTEQQVLRKGYVHEIG 224
Query: 342 DKI 344
++
Sbjct: 225 AQV 227
>1wde_A Probable diphthine synthase; structural genomics, conserved
hypothetical protein, riken S genomics/proteomics
initiative, RSGI, transferase; 2.00A {Aeropyrum pernix}
SCOP: c.90.1.1
Length = 294
Score = 153 bits (387), Expect = 6e-44
Identities = 37/249 (14%), Positives = 73/249 (29%), Gaps = 22/249 (8%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSR 188
+ LVG G TL+A+ +++AD++ + L + R
Sbjct: 10 LLLVGWGYAPGMQ-TLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEASRR 68
Query: 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIA 248
EE ++S A V + GDP+V + G+ V+ IPG++
Sbjct: 69 DLEERSREIVSRALDA-VVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAAR 127
Query: 249 AELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLV------------VYM 296
+ G ++ + + N T
Sbjct: 128 GATMLSFYRFGGTVTLPG-PWRGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPGQ 186
Query: 297 GLSTLPSLALKLMHHGLPPH-----TPAAAIERGTTPQQRIVFSELKDLADKIGVEELVS 351
G+S L + P + + +S L+ L+ + S
Sbjct: 187 GVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTADVEGGVYS 246
Query: 352 PTLIIIGKV 360
++I ++
Sbjct: 247 --IVIPARL 253
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase,
transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Length = 275
Score = 142 bits (359), Expect = 4e-40
Identities = 49/249 (19%), Positives = 86/249 (34%), Gaps = 43/249 (17%)
Query: 122 EKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY------------------DRLVS 163
+ L+G G G+P +T +A+ + ADL+L ++
Sbjct: 17 RGSHMIELSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLRRQICAAHLT 76
Query: 164 ND---VLDLVAP---NARLLYVGKTAGYHSRTQEEIHELLLSF-AEVGATVVRLKGGDPL 216
N V+D P + Y +H E + + + V L GDP
Sbjct: 77 NPATKVIDFALPVRDASNPSYRKGVDDWHDAIAETWLSEITAHVPGLEGRVALLVWGDPS 136
Query: 217 VFGRGGEEMDFLQQK-GIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGG 275
++ + L+ + + KVIPGITA + A IPL G V TG +
Sbjct: 137 LYDSTLRIAERLKSRLPLTTKVIPGITAIQALCAAHAIPLNDIG--APVVITTGRQLRDH 194
Query: 276 TDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFS 335
P A ++ + + G + SL P P++ ++
Sbjct: 195 GWP-------AGTETVVAMLDGECSFQSLP--------PDGLTIFWGACVAMPEEVLIRG 239
Query: 336 ELKDLADKI 344
+ ++ D+I
Sbjct: 240 PVAEVTDEI 248
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta,
alpha-beta-alpha sandwich, structural genomics, PSI, P
structure initiative; HET: SAH; 2.27A {Archaeoglobus
fulgidus} SCOP: c.90.1.1
Length = 221
Score = 74.4 bits (183), Expect = 1e-15
Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 23/156 (14%)
Query: 120 GAEKCGPGN--VYLVGTGPGDPDLLTLKAMKVIQKADLLL-YDRLVSNDVLDLVAPNARL 176
G E +++VG+G T +A ++I++A+++ R L+L
Sbjct: 13 GRENLYFSGHMIWIVGSGTCRGQT-TERAKEIIERAEVIYGSRR-----ALELAGVVDD- 65
Query: 177 LYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVK 236
+ S +EI ++ V + GDP+V G G + + +++K
Sbjct: 66 ---SRARILRSFKGDEIRRIMEEGR--EREVAVISTGDPMVAGLGRVLREIA--EDVEIK 118
Query: 237 VIPGITAASGIAAELGIPLTHRGVANSVRFLTGHSR 272
+ P I++ A L + L + V + H++
Sbjct: 119 IEPAISSVQVALARLKVDL------SEVAVVDCHAK 148
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 7e-09
Identities = 49/253 (19%), Positives = 85/253 (33%), Gaps = 67/253 (26%)
Query: 146 AMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGA 205
A V +AD D +LD+V N L + G + I E + +
Sbjct: 1642 AQDVWNRADNHFKDTY-GFSILDIVINNPVNLTIHFG-GEKGK---RIRENYSAM--IFE 1694
Query: 206 TVVRLKGGDPLVFGRGGEEM---DFLQQKGI-------QVKVIPGITAASGIAAELGIPL 255
T+V K +F E F +KG+ Q P +T A E L
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ----PALTLMEKAAFED---L 1747
Query: 256 THRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHH-GLP 314
+G+ + GHS + E AA L + ++ S ++++ + G+
Sbjct: 1748 KSKGLIPADATFAGHS---------LGEYAA-----LASLADVMSIES-LVEVVFYRGM- 1791
Query: 315 PHTPAAAIERGTT-----------PQQ-RIVFSE--LKDLADKIGVE--ELVSP------ 352
T A+ R P + FS+ L+ + +++G LV
Sbjct: 1792 --TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 353 --TLIIIGKVVSL 363
+ G + +L
Sbjct: 1850 NQQYVAAGDLRAL 1862
Score = 45.0 bits (106), Expect = 4e-05
Identities = 55/292 (18%), Positives = 89/292 (30%), Gaps = 90/292 (30%)
Query: 18 SACNSIKQFNPISPK----SFICSLHFNDTSSSSSSSSPFTEKHSFERYQRDQWVYSSLQ 73
+ +S + F K F + + ++S E SL+
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE--------------DSLE 329
Query: 74 HNRPEPTSP--SVS------LDADSTRRND---------IAL-----QL-----PE-LKK 105
+N P SP S+S + + N I+L L P+ L
Sbjct: 330 NNEGVP-SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 106 LLQVLREKR-----EEDRV--GAEKCGPGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLY 158
L LR+ + ++ R+ K N +L P LL A +I K DL+
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV-PASDLINK-DLVKN 446
Query: 159 DRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDP--- 215
+ VS + D+ P V Y + ++ L + +V P
Sbjct: 447 N--VSFNAKDIQIP------V-----YDTFDGSDLRVLS---GSISERIVDCIIRLPVKW 490
Query: 216 -----------LVFGRGG----EEMDFLQQKGIQVKVIPGITAASGIAAELG 252
L FG GG + + G V+VI T + G
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 41.6 bits (97), Expect = 5e-04
Identities = 78/486 (16%), Positives = 137/486 (28%), Gaps = 171/486 (35%)
Query: 10 SSSSSPLSSACNSIKQFNPISP----------KSFICSLHFNDTSSSSSSSSPFTEKHSF 59
+ S+ PL+ + S++ + + F L T ++ P T
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP-EPTEGFAADDEPTTPAELV 61
Query: 60 ERYQRDQWVYSSLQH--NRPEPTSPS-------VSLDA-DST--RRNDI---ALQLPE-- 102
++ L + + EP+ + L ++ NDI A +L +
Sbjct: 62 GKF---------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 103 ---LKKLLQVLR--------EKREEDRVG------AEKCGPGNVYLV--GTGPGD---PD 140
L K ++++ KR D+ A G + + G G D +
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 141 LLTL----KAM--KVIQKADLLLYDRLVSNDV---------LDLV--------APN---- 173
L L + +I+ + L + L+ + L+++ P+
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSE-LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 174 ---------------ARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLKGGDPLVF 218
A + K G+ T E+ L +V +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGF---TPGELRSYLKGATGHSQGLVT-----AVAI 283
Query: 219 GRGGEEMDFLQQ--KGIQV---------KVIPGITAASGIAAEL-----GIP-------- 254
F K I V + P + I + G+P
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 255 LTHRGVANSVRFLTGHSRKGGTDPLFVA-ENAADPDSTLVVYMGLSTLPSLALKLMHHGL 313
LT V + V H + ++ N A LVV + P +L +GL
Sbjct: 344 LTQEQVQDYVNKTNSH--LPAGKQVEISLVNGAK---NLVV-----SGPPQSL----YGL 389
Query: 314 PPHTPAAAIERGTTPQQRIVFSE--------------------LKDLADKIGVEELVSPT 353
A G Q RI FSE L +D I ++LV
Sbjct: 390 NLTLRKAKAPSGLD-QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI-NKDLVKNN 447
Query: 354 LIIIGK 359
+ K
Sbjct: 448 VSFNAK 453
Score = 36.2 bits (83), Expect = 0.019
Identities = 76/461 (16%), Positives = 132/461 (28%), Gaps = 179/461 (38%)
Query: 2 ALLYRLSFSSSSSPLSSACNS-----IKQF----NPI-----------SPKSFICSL--- 38
+ R S+S L A + F N + + L
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 39 ---HFNDTSSSSSSSSPFTEKHSFER-YQRDQWVYSSLQHNRPEPTSPSVS-LDADSTRR 93
++ ++ + F + +W L++ P T P L +
Sbjct: 191 SAETLSELIRTTLDAEKV-----FTQGLNILEW----LEN--PSNT-PDKDYLLS----- 233
Query: 94 NDIALQLPELKKLLQVLREKREEDRVGAEKCG--PGNV--YLVG-TGPGDPDLLTLKAMK 148
I + P L ++Q+ V A+ G PG + YL G TG L+T A+
Sbjct: 234 --IPISCP-LIGVIQLAHY-----VVTAKLLGFTPGELRSYLKGATGHSQ-GLVT--AV- 281
Query: 149 VIQKADLLLYDRLVSNDVLDLVAPNA-RLL-YVGKTAGYHSRTQEEIHELLLSFAEVGAT 206
I + D S + + A +L ++G R E L +
Sbjct: 282 AIAETD--------SWESFFVSVRKAITVLFFIG------VRCYEAYPNTSLP-----PS 322
Query: 207 VVRLKGGDPLVFGRG---------GEEMDFLQQ------------KGIQVKVIPGITAA- 244
++ D L G + +Q K +++ ++ G
Sbjct: 323 ILE----DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 245 -SG--------------IAAELG-----IPLTHRGVANSVRFLTG----HSRKGGTDPLF 280
SG A G IP + R + S RFL HS
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH-------- 430
Query: 281 VAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVF-----S 335
+ + L+ + + + I P V+ S
Sbjct: 431 --------------LLV-PASDLINKDLVKNNVSFNAKDIQI-----P----VYDTFDGS 466
Query: 336 ELKDLADKIGVEELVSPTLIIIGKVVSLSPFWPISSK-EAT 375
+L+ L+ I E +V II V W +++ +AT
Sbjct: 467 DLRVLSGSI-SERIVD--CIIRLPV-----KWETTTQFKAT 499
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 8e-05
Identities = 50/348 (14%), Positives = 100/348 (28%), Gaps = 117/348 (33%)
Query: 1 MALLYR-LSFSSSSSPLSSACNSIKQFNPISPKSFICSLHFNDTSSSSSSSSPFTE--KH 57
+LL + L P +P S+ E +
Sbjct: 304 KSLLLKYLDCRPQDLP-REVLT-------TNP--RRLSI--------------IAESIRD 339
Query: 58 SFERYQRDQWVYSSLQHNRPEPT-SPSV-SLDADSTRRN--DIAL-----QLPELKKLLQ 108
+ D W + + ++ S+ L+ R+ +++ +P LL
Sbjct: 340 GLATW--DNWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT--ILLS 393
Query: 109 VL--REKREEDRVGAEKC----------GPGNVYLVGTGPGDPDLLTLKAMKVIQKADL- 155
++ + + V K + + P + +K+ + L
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-------PSIYLELKVKLENEYALH 446
Query: 156 --LL--YDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAEVGATVVRLK 211
++ Y+ + D DL+ P Y G+H + E + L F
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQ-YFYSHIGHHLKNIEHPERMTL-F----------- 493
Query: 212 GGDPLVFGRGGEEMD--FLQQKGIQVKVIPGITAASGIAAELGIPLTHRGVANSVRFLTG 269
+VF +D FL+QK I+ A + + ++F
Sbjct: 494 ---RMVF------LDFRFLEQK-IR---------HDSTAWNASGSILN--TLQQLKFYKP 532
Query: 270 HSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKLMHHGLPPHT 317
+ + +N DP +V L LP + L+ +T
Sbjct: 533 Y----------ICDN--DPKYERLVNAILDFLPKIEENLICS---KYT 565
Score = 37.1 bits (85), Expect = 0.009
Identities = 38/295 (12%), Positives = 77/295 (26%), Gaps = 107/295 (36%)
Query: 16 LSSACNSIKQF--NPISPK-SFICSLHFNDTSSSSSSSSPFTEKHSFERYQRDQWVYSSL 72
LS +++F + F+ S + S + + E+ +R D V++
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKY 129
Query: 73 QHNRPEPTSPSVSLDADSTRRNDIALQLPELKKLLQVLREKREEDRV---GAEKCG---- 125
+R +P KL Q L E R V G G
Sbjct: 130 NVSRLQP-----------------------YLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 126 --------------PGNVYLVGTGPGDPDLLTLKAMK----------------------- 148
++ + + L+ ++
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 149 ---VIQKADLLLYDR------LVSNDV-----LDLVAPNARLL----------YVGKTAG 184
+ + LL + LV +V + + ++L ++
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 185 YHSR--------TQEEIHELLLSFAEVGATVVR--LKGGDPLVFGRGGEEM-DFL 228
H T +E+ LLL + + + + +P E + D L
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.005
Identities = 7/34 (20%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 55 EKHSFERYQRDQWVYSSLQHNRPEPTSPSVSLDA 88
EK + ++ Q +SL+ + ++P++++ A
Sbjct: 18 EKQALKKLQ------ASLKLYADD-SAPALAIKA 44
Score = 28.8 bits (63), Expect = 1.8
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 298 LSTLPSLALKLMHHGLPPHTPAAAIE 323
L L + +LKL PA AI+
Sbjct: 22 LKKLQA-SLKLYA---DDSAPALAIK 43
Score = 26.5 bits (57), Expect = 10.0
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 21/45 (46%)
Query: 102 ELKKLLQVLREKREEDRVGAEKCGPGNVYLVGTGPGDPDLLTLKA 146
LKKL L+ +Y + P L +KA
Sbjct: 21 ALKKLQASLK-----------------LYADDSAPA----LAIKA 44
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel,
ligand binding protein; HET: SAM; 2.20A {Staphylococcus
aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Length = 340
Score = 34.5 bits (80), Expect = 0.050
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 189 TQEEIHELLLSFAEVGATVVRLKGGDPLV 217
T +E+ + +AE+G +R+ GG+PL+
Sbjct: 51 TFDEMARIAKVYAELGVKKIRITGGEPLM 79
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin
synthesis, ASB locus, structu genomics, PSI-2, protein
structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus
anthracis}
Length = 286
Score = 32.4 bits (74), Expect = 0.18
Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 30/121 (24%)
Query: 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGI 247
+T E+ +L + +R G +E + + I +
Sbjct: 81 KTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQ---------EYVNRIRMICEL 131
Query: 248 AAELGIPL---THRG-----VANSVRFL-------------TGHSRKGGTDPLFVAENAA 286
A+ + + TH + +++ L H + G DP+ +
Sbjct: 132 FAQHNMYVLLETHPNTLTDTLPSTLELLGEVDHPNLKINLDFLHIWESGADPVDSFQQLR 191
Query: 287 D 287
Sbjct: 192 P 192
>3ojg_A Phosphotriesterase; (beta/alpha)8 barrel, lactonase, hydrolase;
HET: KCX HL4; 1.60A {Geobacillus kaustophilus} PDB:
3orw_A* 3f4c_A* 3f4d_A*
Length = 330
Score = 31.6 bits (71), Expect = 0.44
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 241 ITAASGIAAELGIPL-THRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLS 299
AA+ E G + TH T G ++ E+ ADP ++ +M +
Sbjct: 165 FRAAARAQKETGAVIITH----------TQEGTMGPEQAAYLLEHGADPKKIVIGHMCGN 214
Query: 300 TLPSLALKLMHHG 312
T P K + +G
Sbjct: 215 TDPDYHRKTLAYG 227
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 31.5 bits (72), Expect = 0.53
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 232 GIQVKVIPG---ITAASGIAAELGIPLTHRGVANSVRFLTGH 270
GI+V +I G TA + I +GI + R TG
Sbjct: 619 GIRVIMITGDNKGTAIA-ICRRIGI--FGENEEVADRAYTGR 657
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine
biosynthesis, transferase, glycosyltransferase, gluta
amidotransferase; HET: PIN; 2.00A {Escherichia coli}
SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
1ecj_A*
Length = 504
Score = 31.0 bits (71), Expect = 0.63
Identities = 9/22 (40%), Positives = 9/22 (40%), Gaps = 4/22 (18%)
Query: 237 VIP----GITAASGIAAELGIP 254
VIP A IA LG P
Sbjct: 298 VIPIPETSCDIALEIARILGKP 319
>3v39_A D-alanyl-D-alanine carboxypeptidase; peptidoglycan transpeptidase
fold, endopeptidase, serine MOD hepes buffer molecule,
hydrolase; HET: PGE; 1.45A {Bdellovibrio bacteriovorus}
Length = 418
Score = 30.1 bits (67), Expect = 1.1
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 11/53 (20%)
Query: 125 GPGNVYLVGTGPGDPDLLT---------LKAMKVIQKADLLLYDRLVSNDVLD 168
G ++++ G+ DP L MK+ + L + + + +
Sbjct: 66 GSYDIHIEGS--RDPLFGRNMSYFLISELNRMKITKIEKLTFDENFLLAWLAE 116
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer,
structural genomics, PSI-2, protein structure
initiative; 1.71A {Bifidobacterium adolescentis
ATCC15703}
Length = 282
Score = 30.0 bits (68), Expect = 1.3
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 10/48 (20%)
Query: 298 LSTLPSLALK-LMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKI 344
+ TL + L+ LM + H R FS L+ D I
Sbjct: 190 IGTLDGIELQGLM--TIGAHVHDET-------VIRRGFSHLRKTRDLI 228
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta
barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB:
2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A*
3fdk_A* 3htw_A*
Length = 339
Score = 29.7 bits (66), Expect = 1.5
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 241 ITAASGIAAELGIPL-THRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLS 299
AA+ + E G+P+ TH T ++G + ADP ++ +M +
Sbjct: 175 FRAAARVQRETGVPIITH----------TQEGQQGPQQAELLTSLGADPARIMIGHMDGN 224
Query: 300 TLPSLALKLMHHG 312
T P+ + + HG
Sbjct: 225 TDPAYHRETLRHG 237
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase,
phosphorylation, serine/threonine protein kinase; 1.8A
{Homo sapiens} SCOP: d.144.1.7
Length = 355
Score = 29.6 bits (67), Expect = 1.8
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 73 QHNRPEPTSPSVSLDADSTRRNDIALQLPELKKLLQVLREKREEDRVGAE-----KC-GP 126
H+ E S S D QL +K L+ ++VG E K G
Sbjct: 5 HHHHEEEGGSSGGAAGTSADGGDGGEQLLTVKHELRTANLTGHAEKVGIENFELLKVLGT 64
Query: 127 GN---VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLV 162
G V+LV D L AMKV++KA ++ +
Sbjct: 65 GAYGKVFLV-RKISGHDTGKLYAMKVLKKATIVQKAKTT 102
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 28.8 bits (65), Expect = 2.2
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 221 GGEEM-DFLQQKGIQVKVIPG--ITAASGIAAELGIPLTHRGVANSVRF-----LTG 269
G E+ LQ++ +QV +I G + +A++L IP T+ AN ++F G
Sbjct: 90 GIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATN-VFANRLKFYFNGEYAG 145
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 29.7 bits (66), Expect = 2.3
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 10 SSSSSPLSSACNSIKQFNPISPKSFICSLHFNDTSSSSSSSSPFTEKHSFERYQRDQWVY 69
S S SP S + ++P SP S ++ TS S S +SP S Y Y
Sbjct: 1624 SPSYSPTSPS------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSY 1676
Query: 70 SSLQHNRPEPTSPSVS 85
S PTSPS S
Sbjct: 1677 SP-TSPSYSPTSPSYS 1691
Score = 28.9 bits (64), Expect = 3.7
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 15/78 (19%)
Query: 8 SFSSSSSPLSSACNSIKQFNPISPKSFICSLHFNDTSSSSSSSSPFTEKHSFERYQRDQW 67
S S + P S + ++P SP S ++ TS S S +SP Y
Sbjct: 1566 STSPAYMPSSPS------YSPTSPSYSPTSPSYSPTSPSYSPTSP--------SYSATSP 1611
Query: 68 VYSSLQHNRPEPTSPSVS 85
YS + PTSPS S
Sbjct: 1612 SYSPTSPSYS-PTSPSYS 1628
Score = 28.1 bits (62), Expect = 5.6
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 11 SSSSPLSSACNSIKQFNPISPKSFICSLHFNDTSSSSSSSSPFTEKHSFE------RYQR 64
S +SP SA + ++P SP S ++ TS S S +SP S Y
Sbjct: 1600 SPTSPSYSA--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1657
Query: 65 DQWVYS------SLQHNRPEPTSPSVS 85
YS S PTSPS S
Sbjct: 1658 TSPSYSPTSPSYSPTSPSYSPTSPSYS 1684
Score = 27.7 bits (61), Expect = 8.4
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 11 SSSSPLSSACNSIKQFNPISPKSFICSLHFNDTSSSSSSSSPFTEKHSFERYQRDQWVYS 70
S +SP S + ++P SP S ++ TS S S +SP S Y YS
Sbjct: 1677 SPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYS 1733
Query: 71 SLQHNRPEPTSPSVS 85
+ PTSPS S
Sbjct: 1734 PTSPS-YSPTSPSYS 1747
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics,
PSI, protein structure initiative; 2.00A {Deinococcus
radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Length = 211
Score = 28.5 bits (64), Expect = 3.1
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 299 STLPSLALKLMHHGL----PPHTPAAAIERGTTP 328
+TL +L + MH G P +T + G P
Sbjct: 133 TTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNP 166
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain,
homodimer, exosome, cell-death-related DNAS hydrolase;
3.92A {Caenorhabditis elegans}
Length = 222
Score = 28.2 bits (63), Expect = 3.4
Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 3/67 (4%)
Query: 240 GITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLS 299
I A + G+P + + DP E A+ V G
Sbjct: 108 AINGACFALLDNGMPFETVFCGVLIVRVKDELI---IDPTAKQEAASTGRVLFSVCKGSD 164
Query: 300 TLPSLAL 306
P +
Sbjct: 165 GHPEVCA 171
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 28.9 bits (64), Expect = 3.5
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 11 SSSSPLSSACNSIKQFNPISPKSFICSLHFNDTSSSSSSSSPFTEKHSFE------RYQR 64
S +SP S + ++P SP S ++ TS S S +SP S Y
Sbjct: 1599 SPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1656
Query: 65 DQWVYSSLQHNRPEPTSPSVS 85
YS + PTSPS S
Sbjct: 1657 TSPAYSPTSPSY-SPTSPSYS 1676
Score = 28.1 bits (62), Expect = 5.6
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 15/91 (16%)
Query: 10 SSSSSPLSSACN-SIKQFNPISPKSFICSLHFNDTSSSSSSSSPFTEKHSFERYQRDQWV 68
S S SP S A + + ++P SP S ++ TS S S +SP Y
Sbjct: 1651 SPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--------NYSPTSPS 1702
Query: 69 YS------SLQHNRPEPTSPSVSLDADSTRR 93
YS S P + + R
Sbjct: 1703 YSPTSPGYSPGSPAYSPKQDEQKHNENENSR 1733
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB:
3hyo_A* 3ibq_A*
Length = 282
Score = 28.3 bits (64), Expect = 3.6
Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 27/119 (22%)
Query: 168 DLVAPN---ARLLYVGKTAGYHSR-TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGE 223
D++ PN A LL G Y E I L + + GA V + R +
Sbjct: 136 DVILPNTTEAALL-TGAP--YQVTPDLEVILPALQAQLKTGAHAV-ITDV-----QRADQ 186
Query: 224 EMDFLQQKG-----IQVKVIP------GITAASGIAAEL--GIPLTHRGVANSVRFLTG 269
+ + +P G T A+ IA L G PL +A + ++L
Sbjct: 187 IGCAWLDEAGHVQYCGARRLPGHYNGTGDTLAAVIAGLLGRGYPL-APTLARANQWLNM 244
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL
domain, structur genomics, PSI-2, protein structure
initiative; 2.15A {Staphylococcus aureus subsp} SCOP:
d.58.18.13
Length = 98
Score = 26.6 bits (59), Expect = 5.2
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 203 VGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI 238
VG V+ + + FG+ L ++ ++++V+
Sbjct: 63 VGFLVLHIPYISSVDFGKF---EKELIERQVKMEVL 95
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 28.4 bits (64), Expect = 5.4
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 232 GIQVKVIPG---ITAASGIAAELGI 253
GI+V ++ G ITA + IA +GI
Sbjct: 615 GIKVIMVTGDHPITAKA-IAKGVGI 638
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 27.9 bits (63), Expect = 5.8
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 6/35 (17%)
Query: 252 GIPLTHRGVANSVRF------LTGHSRKGGTDPLF 280
IP TH S++ L + P+
Sbjct: 199 LIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMA 233
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX;
1.60A {Listeria monocytogenes serotype 4b
strorganism_taxid}
Length = 330
Score = 27.8 bits (61), Expect = 6.9
Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 11/73 (15%)
Query: 241 ITAASGIAAELGIPL-THRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLS 299
I A + E P+ +H T + + + + +M +
Sbjct: 170 IRAVARAHHETKAPIHSH----------TEAGTMALEQIEILKQENIPLEYLSIGHMDRN 219
Query: 300 TLPSLALKLMHHG 312
P ++ G
Sbjct: 220 LDPYYHKQVAKTG 232
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 27.9 bits (63), Expect = 7.5
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 6/35 (17%)
Query: 252 GIPLTHRGVANSVRF------LTGHSRKGGTDPLF 280
IP TH SVR L ++R P
Sbjct: 208 LIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAP 242
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT
structure initiative; HET: MSE; 1.80A {Pseudomonas
aeruginosa PAO1} SCOP: c.1.15.7
Length = 264
Score = 27.3 bits (60), Expect = 7.6
Identities = 22/157 (14%), Positives = 39/157 (24%), Gaps = 16/157 (10%)
Query: 191 EEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIAAE 250
E+ L GA +++ G L + G+Q+ V T G
Sbjct: 84 PELEPTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLARHGLQLLVENDQTPQGGRIEV 143
Query: 251 LGI---PLTHRGVANSVRFLTGHSRKGGTDPLFVAE------------NAADPDSTLVVY 295
L + + ++ F G+ R A +V
Sbjct: 144 LERFFRLAERQQLDLAMTFDIGNWRWQEQAADEAALRLGRYVGYVHCKAVIRNRDGKLVA 203
Query: 296 MGLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRI 332
+ S + + P AIE +
Sbjct: 204 VPPSAADLQYWQRLLQHFPEGVA-RAIEYPLQGDDLL 239
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 27.3 bits (61), Expect = 8.1
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 165 DVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAE 202
+V+ A N + V + + + EEI++ + +
Sbjct: 199 EVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQ 236
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 27.7 bits (62), Expect = 8.4
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 4/29 (13%)
Query: 228 LQQKGIQVKVIPG---ITAASGIAAELGI 253
G+ VK+I G LG+
Sbjct: 500 ALNLGVNVKMITGDQLAIGKE-TGRRLGM 527
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine
amidotransferase, prtase, purine biosynthesis,
phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus
subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Length = 459
Score = 27.4 bits (62), Expect = 9.8
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 4/22 (18%)
Query: 237 VIP----GITAASGIAAELGIP 254
V I+AA G A GIP
Sbjct: 277 VTGVPDSSISAAIGYAEATGIP 298
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic,
hydrolase/transferase complex; 3.35A {Homo sapiens}
SCOP: d.14.1.4 d.101.1.1
Length = 272
Score = 27.1 bits (60), Expect = 9.8
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 241 ITAASGIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMG 297
+TAA+ A+ G+ + V + G + DP + E A T V M
Sbjct: 162 LTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLT-VALMP 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.381
Gapped
Lambda K H
0.267 0.0847 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,813,775
Number of extensions: 369187
Number of successful extensions: 1199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1122
Number of HSP's successfully gapped: 69
Length of query: 381
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 286
Effective length of database: 4,049,298
Effective search space: 1158099228
Effective search space used: 1158099228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (25.9 bits)