RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016852
(381 letters)
>d1s4da_ c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase (SUMT,
UROM, CobA) {Pseudomonas denitrificans [TaxId: 43306]}
Length = 265
Score = 195 bits (497), Expect = 4e-61
Identities = 93/239 (38%), Positives = 133/239 (55%)
Query: 126 PGNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGY 185
G+V+LVG GPGDP LLTL A +++AD++++D LV+ D L L P A L + GK G
Sbjct: 9 KGSVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGGK 68
Query: 186 HSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAAS 245
S Q +I L+ A G V+RLKGGDP VFGRGGEE L + + +++PGITA
Sbjct: 69 PSPKQRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGI 128
Query: 246 GIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLA 305
G A GIP+THR V ++V FLTGH G + A +V+YM + + ++
Sbjct: 129 GGLAYAGIPVTHREVNHAVTFLTGHDSSGLVPDRINWQGIASGSPVIVMYMAMKHIGAIT 188
Query: 306 LKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLS 364
L+ G P P A + TPQQ ++ + L + L P ++++G+VV L
Sbjct: 189 ANLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVRLR 247
>d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 265
Score = 188 bits (477), Expect = 5e-58
Identities = 42/247 (17%), Positives = 85/247 (34%), Gaps = 16/247 (6%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSR 188
+Y +G G D +T+K +++ +K D + + S + +L+
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSRED 62
Query: 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIA 248
+ ++L A+ V L GDPLV E ++ G++ VI + S +
Sbjct: 63 VELNFENIVLPLAK-ENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVG 121
Query: 249 AELGIPLTHRGVANSVRFLTGHSR------------KGGTDPLFVAENAADPDSTLVVYM 296
G+ + G + +V + G+ + G L + A+ +
Sbjct: 122 I-TGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANE 180
Query: 297 GLSTLPSLALKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLII 356
+ L + T + R + I +KDL + + LI+
Sbjct: 181 AMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPP--HILIV 238
Query: 357 IGKVVSL 363
GK+ +
Sbjct: 239 PGKLHIV 245
>d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and
5 {Salmonella typhimurium [TaxId: 90371]}
Length = 242
Score = 175 bits (445), Expect = 1e-53
Identities = 120/238 (50%), Positives = 160/238 (67%), Gaps = 5/238 (2%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G V LVG GPGD LLTLK ++ IQ+AD+++YDRLVS+D+++LV +A ++VGK AGYH
Sbjct: 1 GEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYH 60
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
QEEI+++LL A+ G VVRLKGGDP +FGRGGEE++ L GI V+PGITAASG
Sbjct: 61 CVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASG 120
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
+A GIPLTHR A SVR +TGH + GG EN A TLV YMGL+ ++
Sbjct: 121 CSAYSGIPLTHRDYAQSVRLVTGHLKTGGELDW---ENLAAEKQTLVFYMGLNQAATIQE 177
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSLS 364
KL+ G+ P A +E GT+ +QR+V L L + +++ SP LII+G+VV+L
Sbjct: 178 KLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGEL--AQQVESPALIIVGRVVALR 233
>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 251
Score = 173 bits (438), Expect = 2e-52
Identities = 38/239 (15%), Positives = 88/239 (36%), Gaps = 14/239 (5%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSR 188
+ VG G D +++K ++ +++AD + + S L + + GK R
Sbjct: 3 LTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTS---KLLSSIEEMEEFFGKRVVELER 59
Query: 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIA 248
+ E + L +VV L GDP+V ++KG++ ++I G + ++ +
Sbjct: 60 SDLEENSFRLIERAKSKSVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVC 119
Query: 249 AELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL-- 306
G+ G + +V + + + N + TL+ ++
Sbjct: 120 GLTGLHNYRFGKSATVSWHRSQTPVN-----VIKANRSIDAHTLLFLDLHPEPMTIGHAV 174
Query: 307 --KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
+ A I R + ++ + L++L + L ++++ K +
Sbjct: 175 ENLIAEDAQMKDLYAVGIARAGSGEEVVKCDRLENLKKIDFGKPL--HVMVVLAKTLHF 231
>d1va0a1 c.90.1.1 (A:2-226) Hypothetical protein TTHA0667 {Thermus
thermophilus [TaxId: 274]}
Length = 225
Score = 166 bits (420), Expect = 3e-50
Identities = 100/237 (42%), Positives = 138/237 (58%), Gaps = 13/237 (5%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G VYLVG GPGDP+LLTLKA +++++A ++LYDRLV VL L
Sbjct: 1 GRVYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVDERVLALAPGEKV---YVGKEEGE 57
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
S QEEIH LLL A VVRLKGGDP+VFGRGGEE+ FL + G+ V+V+PG+T+
Sbjct: 58 SEKQEEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTS--- 114
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
G+PLTHRG+A+ ++G GG L TLVV MG+ +A
Sbjct: 115 -LLASGLPLTHRGLAHGFAAVSGVLEGGGYPDL----RPFARVPTLVVLMGVGRRVWIAK 169
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
+L+ G P P +ER +TP++R V + L+++A+ E+ P L I+G+VV +
Sbjct: 170 ELLRLGRDPREPTLFVERASTPKERRVHARLEEVAEG--KVEVRPPALWILGEVVRV 224
>d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix
[TaxId: 56636]}
Length = 289
Score = 164 bits (416), Expect = 9e-49
Identities = 36/251 (14%), Positives = 74/251 (29%), Gaps = 20/251 (7%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSR 188
+ LVG G + TL+A+ +++AD++ + L + R
Sbjct: 5 LLLVGWGYAP-GMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEASRR 63
Query: 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIA 248
EE ++S A V + GDP+V + G+ V+ IPG++
Sbjct: 64 DLEERSREIVSRALDA-VVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAAR 122
Query: 249 AELGIPLTHRGVANSVRFLTGHSRKGGTDPLF-----------VAENAADPDSTLVVYMG 297
+ G ++ + + L G
Sbjct: 123 GATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPGQG 182
Query: 298 LSTLPSLALKLMHHGLPPH-----TPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSP 352
+S L + P + + +S L+ L+ + S
Sbjct: 183 VSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTADVEGGVYS- 241
Query: 353 TLIIIGKVVSL 363
++I ++ +
Sbjct: 242 -IVIPARLSGV 251
>d1cbfa_ c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase CbiF
{Bacillus megaterium [TaxId: 1404]}
Length = 239
Score = 159 bits (402), Expect = 2e-47
Identities = 64/234 (27%), Positives = 119/234 (50%), Gaps = 8/234 (3%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGYHS 187
+Y++G GPGDPDL+T+K +K++Q+AD++LY D LVS D++ P A +L
Sbjct: 11 LYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLK------TAG 64
Query: 188 RTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGI 247
EE+ +L G VVR+ GDP ++G E+M L+++G+ ++++PG+T+
Sbjct: 65 MHLEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAA 124
Query: 248 AAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALK 307
AA LT + +V R + + + A T+ +++ + + +
Sbjct: 125 AAAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAK-HKCTIALFLSSTLTKKVMKE 183
Query: 308 LMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVV 361
++ G TP + + T P ++IV + +KDL D + + +I+ G +
Sbjct: 184 FINAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMILAGWAL 237
>d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase
(SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]}
Length = 235
Score = 156 bits (395), Expect = 2e-46
Identities = 93/237 (39%), Positives = 128/237 (54%), Gaps = 15/237 (6%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYH 186
G VYLVG G G P+ LTLKA++V++ A+++L+DRLV VL L L+ VGK
Sbjct: 3 GKVYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVHPGVLALA--KGELVPVGKEGYGG 60
Query: 187 SRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASG 246
QE I L++ A G V RLKGGDP+VFGRGGEE L++ GI +V+PG+T+A G
Sbjct: 61 KTPQEAITARLIALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVG 120
Query: 247 IAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLAL 306
+ LG+PLTHRG+A S TGH P + +V +
Sbjct: 121 ALSALGLPLTHRGLARSFAVATGHDP-----------ALPLPRADTLVLLMPLHTLGGLK 169
Query: 307 KLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELVSPTLIIIGKVVSL 363
+ + PP TP A + R P + + ++DL E L SP L+++GKVV L
Sbjct: 170 ERLLERFPPETPLALLARVGWPGEAVRLGRVEDLPGL--GEGLPSPALLVVGKVVGL 224
>d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 195
Score = 107 bits (268), Expect = 3e-28
Identities = 33/215 (15%), Positives = 70/215 (32%), Gaps = 33/215 (15%)
Query: 129 VYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSR 188
+++VG+G T +A ++I++A+++ R L+L + S
Sbjct: 2 IWIVGSGTCRGQT-TERAKEIIERAEVIYGSRRA----LELAGVVDD----SRARILRSF 52
Query: 189 TQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAASGIA 248
+EI ++ V + GDP+V G G + + I++ P I++
Sbjct: 53 KGDEIRRIM--EEGREREVAVISTGDPMVAGLGRVLREIAEDVEIKI--EPAISSVQVAL 108
Query: 249 AELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLALKL 308
A L + L+ V + H++ + L++ L
Sbjct: 109 ARLKVDLSE------VAVVDCHAKDFDAE----LTELLKYRHLLILADSHFPL------- 151
Query: 309 MHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADK 343
+E +RI + +
Sbjct: 152 ---ERLGKRRVVLLENLCMEGERIREGNADSIELE 183
>d1wyza1 c.90.1.1 (A:2-234) Putative methytransferase BT4190
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 233
Score = 85.7 bits (211), Expect = 6e-20
Identities = 37/235 (15%), Positives = 72/235 (30%), Gaps = 11/235 (4%)
Query: 130 YLVGTGPGD---PDLLTLKAMKVIQKADLLLY-DRLVSNDVLDLVAPNARLLYVGKTAGY 185
YL+ GD +L ++I+ + D + L V + +
Sbjct: 5 YLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLN 64
Query: 186 HSRTQEEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVIPGITAAS 245
+ E+I L A + V + G P V G + + Q++ ++V + G ++
Sbjct: 65 KHTSPEDISGYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSII 124
Query: 246 GIAAELGIPLTHRGVANSVRFLTGHSRKGGTDPLFVAENAADPDSTLVVYMGLSTLPSLA 305
G + G L E +S +++
Sbjct: 125 LSVMASGFNGQSFAFHGYLPIEPGERA----KKLKTLEQRVYAESQTQLFIETPYRNHKM 180
Query: 306 LKLMHHGLPPHTPAAAIERGTTPQQRIVFSELKDLADKIGVEELV-SPTLIIIGK 359
++ + P T T + I +KD I EL P + ++ K
Sbjct: 181 IEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGHI--PELSKIPCIFLLYK 233
>d1hdha_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 525
Score = 29.8 bits (65), Expect = 0.69
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 24 KQFNPISPKSFICSLHFNDTSSSSSSSSPFTEKHSFERYQRDQWVYSSLQHNRPEPTSPS 83
++ +S++ L ++ ++ E ++ W P P P+
Sbjct: 428 REIAEPRGRSWLGWLSGETEAAHDENTVTGWELFGMRAIRQGDWKA----VYLPAPVGPA 483
Query: 84 VS----LDADSTRRNDIALQLPE-LKKLLQVLREKREE 116
L D +D+A P L +L++ + E
Sbjct: 484 TWQLYDLARDPGEIHDLADSQPGKLAELIEHWKRYVSE 521
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 192
Score = 28.4 bits (62), Expect = 1.2
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 6 RLSFSSSSSPLSSACNSIKQFNP 28
+L +S L C +IK+F
Sbjct: 154 QLYVASEMKALVPVCRTIKEFPA 176
>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug
{Escherichia coli [TaxId: 562]}
Length = 165
Score = 28.1 bits (62), Expect = 1.2
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 168 DLVAPNARLLYVGKTAGYHSRTQ 190
D++AP R+++ G G S
Sbjct: 4 DILAPGLRVVFCGINPGLSSAGT 26
>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding
protein MetN2 {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 26.6 bits (59), Expect = 1.7
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 203 VGATVVRLKGGDPLVFGRGGEEMDFLQQKGIQVKVI 238
VG V+ + + FG+ L ++ ++++V+
Sbjct: 60 VGFLVLHIPYISSVDFGKF---EKELIERQVKMEVL 92
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.8 bits (60), Expect = 1.9
Identities = 2/27 (7%), Positives = 10/27 (37%)
Query: 182 TAGYHSRTQEEIHELLLSFAEVGATVV 208
T + ++ ++ + + V+
Sbjct: 235 TPYLDEERRRKLITIMERYLKKIPQVI 261
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 27.9 bits (60), Expect = 2.3
Identities = 2/27 (7%), Positives = 10/27 (37%)
Query: 182 TAGYHSRTQEEIHELLLSFAEVGATVV 208
T + ++ ++ + + V+
Sbjct: 312 TPYLDEERRRKLITIMERYLKKIPQVI 338
>d1w5da1 e.3.1.3 (A:5-462) Penicillin-binding protein DacC {Bacillus
subtilis [TaxId: 1423]}
Length = 458
Score = 27.6 bits (60), Expect = 2.7
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 127 GNVYLVGTGPGDPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVG 180
GN+YL G GDP LL K+ + + N + D + L
Sbjct: 85 GNLYLKGK--GDPTLLPSDFDKMAEILKHSGVKVIKGNLIGDDTWHDDMRLSPD 136
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 256
Score = 27.0 bits (59), Expect = 4.1
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 22 SIKQFNPISPKSFICSL--HFNDTSSSSSSSSPFTE-------KHSFERYQRDQWVY 69
++ F +S +L F++T TE + ++Y ++W
Sbjct: 198 NVTDFVDVSIDEVRNALIRGFSETLHIDFREDTITEKEESLARELFDKKYSTEEWNM 254
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 26.7 bits (58), Expect = 4.7
Identities = 9/57 (15%), Positives = 16/57 (28%)
Query: 146 AMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAE 202
A++ ++ D + DL AG ++E EL
Sbjct: 163 ALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVA 219
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 26.5 bits (58), Expect = 5.3
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 138 DPDLLTLKAMKVIQKADLLLYDRLVSNDVLDLVAPNARLLYVGKTAGYHSRTQEEIHELL 197
+ +A+K + + ++ ++L V +H T+EE+ E++
Sbjct: 179 HKSMTLKEAIKSSLIILKQVMEEKLNATNIELA-------TVQPGQNFHMFTKEELEEVI 231
>d2fr2a1 b.60.1.8 (A:4-164) Hypothetical protein Rv2717c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 161
Score = 26.0 bits (57), Expect = 5.5
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 38 LHFNDTSSSSSSSSPFTEKHSFERYQRDQWVYSSLQHNR---------PEPTSPSVSLDA 88
L + + + + P + + R R V L H T + L+
Sbjct: 46 LTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELEL 105
Query: 89 DSTRRNDIALQLPELKKLLQVLRE 112
+ I L P K++ + R
Sbjct: 106 STRADGSIGLA-PTAKEVTALDRS 128
>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and
second domains {Escherichia coli [TaxId: 562]}
Length = 355
Score = 26.4 bits (58), Expect = 5.8
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 191 EEIHELLLSFAEVGATVVRLKGGDPLVFGRGGEEM-------DFLQQK-GIQVKVI 238
++ E LL FA G V +KG L G + +F + G++V+ +
Sbjct: 153 ADVEEKLLRFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAV 208
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 26.2 bits (57), Expect = 7.2
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 165 DVLDLVAPNARLLYVGKTAGYHSRTQEEIHELLLSFAE 202
+V+ A N + V + + + EEI++ + +
Sbjct: 199 EVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQ 236
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.381
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,369,226
Number of extensions: 64372
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 23
Length of query: 381
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,213,086
Effective search space: 356647284
Effective search space used: 356647284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.6 bits)