BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016853
(381 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49434|AAH_ARATH Allantoate deiminase, chloroplastic OS=Arabidopsis thaliana GN=AAH
PE=1 SV=2
Length = 525
Score = 602 bits (1553), Expect = e-171, Method: Compositional matrix adjust.
Identities = 288/375 (76%), Positives = 336/375 (89%)
Query: 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIF 60
MSPAS+RA LIR WMEDAGL TWVD++GNVHGRVE N S+QALLIGSH+DTV+DAG +
Sbjct: 118 MSPASIRAIPLIRGWMEDAGLSTWVDYMGNVHGRVEPKNGSSQALLIGSHMDTVIDAGKY 177
Query: 61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA 120
DGSLGII+AISALKVLK G+LG+LKRPVEVIAFSDEEGVRFQSTFLGSAALAGI+PVS
Sbjct: 178 DGSLGIISAISALKVLKIDGRLGELKRPVEVIAFSDEEGVRFQSTFLGSAALAGIMPVSR 237
Query: 121 LRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGV 180
L V+DKSG++V DAL+ENSIDI +E+L+QLKYDPASVWGY+EVHIEQGPVLEWVG+PLGV
Sbjct: 238 LEVTDKSGISVQDALKENSIDITDENLMQLKYDPASVWGYVEVHIEQGPVLEWVGYPLGV 297
Query: 181 VQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRS 240
V+GIAGQTRLKVTV+GSQGHAGTVPMSMRQDPMT AAELIVLLE +CK+PKD+LS + +
Sbjct: 298 VKGIAGQTRLKVTVKGSQGHAGTVPMSMRQDPMTGAAELIVLLESVCKNPKDYLSCNVQC 357
Query: 241 NCSTLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQ 300
N T+ESL++SLVCTVGEIS+WPSASNVIPG+VTFTVDLR IDD GR+ +L++LS ++YQ
Sbjct: 358 NEDTVESLANSLVCTVGEISTWPSASNVIPGQVTFTVDLRTIDDVGRKAILHDLSTRMYQ 417
Query: 301 ICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDA 360
IC+KRS+ C +ERKHDA+AVM D LS QLKSA+ +ALK+MTG Q E+PV+MSGAGHDA
Sbjct: 418 ICDKRSLLCSIERKHDADAVMSDPQLSLQLKSAAQSALKKMTGEVQDEVPVLMSGAGHDA 477
Query: 361 MAMSHLTKVCSLLCR 375
MAM+HLTKV L R
Sbjct: 478 MAMAHLTKVGMLFVR 492
>sp|Q53389|AMAB2_GEOSE N-carbamoyl-L-amino acid hydrolase OS=Geobacillus
stearothermophilus GN=amaB PE=1 SV=1
Length = 409
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 130/369 (35%), Positives = 207/369 (56%), Gaps = 31/369 (8%)
Query: 7 RAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGI 66
RA +L+ +M +AGL + D GN+ GR EG N A +L+GSHLD+V + G FDG LG+
Sbjct: 36 RAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNPDATVVLVGSHLDSVYNGGCFDGPLGV 95
Query: 67 ITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDK 126
+ + ++ + G + P+EV+AF+DEEG RF+ +GS A+AG LP AL D
Sbjct: 96 LAGVEVVQTMNEHGVV--THHPIEVVAFTDEEGARFRFGMIGSRAMAGTLPPEALECRDA 153
Query: 127 SGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAG 186
G+++ +A+++ +D + L Q P +V Y+E+HIEQG VLE G P+G+V GIAG
Sbjct: 154 EGISLAEAMKQAGLD--PDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAG 211
Query: 187 QTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLE 246
+K T+ G HAG PMS+R+DPM AAA++I+++E +
Sbjct: 212 LIWVKFTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR----------------- 254
Query: 247 SLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRS 306
+ + V TVG++ +P NVIP V F +DLR + R+ V ++ + I ++R+
Sbjct: 255 --TGTTVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERN 312
Query: 307 VSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHL 366
V ER + V+C S ++K A+ AA +++ G +P SGA HD++ ++ +
Sbjct: 313 VRVTTERLQEMPPVLC----SDEVKRAAEAACQKL-GYPSFWLP---SGAAHDSVQLAPI 364
Query: 367 TKVCSLLCR 375
+ + R
Sbjct: 365 CPIGMIFVR 373
>sp|Q01264|HYUC_PSESN Hydantoin utilization protein C OS=Pseudomonas sp. (strain NS671)
GN=hyuC PE=1 SV=1
Length = 414
Score = 217 bits (553), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 197/368 (53%), Gaps = 27/368 (7%)
Query: 11 LIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAI 70
L+ +WM +AGL DH GN+ GR EG S +++IGSH+D+V + G FDG +G++ I
Sbjct: 44 LVSEWMREAGLTVTHDHFGNLIGRKEGETPSLPSVMIGSHIDSVRNGGKFDGVIGVLAGI 103
Query: 71 SALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVT 130
+ + + + +EV+AF +EEG RF GS + G + L+ D + VT
Sbjct: 104 EIVHAISEANVVHE--HSIEVVAFCEEEGSRFNDGLFGSRGMVGKVKPEDLQKVDDNNVT 161
Query: 131 VLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRL 190
+AL+ I + Q + + Y E+HIEQGP LE +P+G+V GIAG +
Sbjct: 162 RYEALKTFGFGIDPDFTHQSIREIGDIKHYFEMHIEQGPYLEKNNYPIGIVSGIAGPSWF 221
Query: 191 KVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSS 250
KV + G GHAGTVPMS+R+DP+ AAE+I +E LC + ++
Sbjct: 222 KVRLVGEAGHAGTVPMSLRKDPLVGAAEVIKEVETLC-----------------MNDPNA 264
Query: 251 SLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCI 310
V TVG I+++P SN+IP V FT+D+R I+ R ++ ++ ++ + R +
Sbjct: 265 PTVGTVGRIAAFPGGSNIIPESVEFTLDIRDIELERRNKIIEKIEEKIKLVSNTRGLEYQ 324
Query: 311 VERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVC 370
+E+ A V C +L + LK + + + P+I+SGAGHDAM ++ +T++
Sbjct: 325 IEKNMAAVPVKCSENLINSLKQSCK--------ELEIDAPIIVSGAGHDAMFLAEITEIG 376
Query: 371 SLLCRLNN 378
+ R N
Sbjct: 377 MVFVRCRN 384
>sp|P37113|AMAB1_GEOSE N-carbamoyl-L-amino acid hydrolase OS=Geobacillus
stearothermophilus GN=amaB PE=3 SV=2
Length = 409
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/369 (35%), Positives = 204/369 (55%), Gaps = 31/369 (8%)
Query: 7 RAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGI 66
RA +L+ +M +AGL + D GN+ GR EG N A +L+GSHLD+V + G FDG LG+
Sbjct: 36 RAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNPDATVVLVGSHLDSVYNGGCFDGPLGV 95
Query: 67 ITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDK 126
+ + ++ + G + P+EV+AF+DEEG RF+ +GS A+AG LP AL D
Sbjct: 96 LAGVEVVQTMNEHGVV--THHPIEVVAFTDEEGARFRFGMIGSRAMAGTLPPEALECRDA 153
Query: 127 SGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAG 186
G+++ +A+++ +D + L Q P +V Y+E+HIEQG VLE G P+G+V GIAG
Sbjct: 154 EGISLAEAMKQAGLD--PDRLPQAARKPGTVKAYVELHIEQGRVLEEAGLPVGIVTGIAG 211
Query: 187 QTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLE 246
+K T+ G HAG PMS+R+DPM AAA++I+++E +
Sbjct: 212 LIWVKFTIAGPAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR----------------- 254
Query: 247 SLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRS 306
+ + V TVG++ +P NVIP V F +DLR + R+ V ++ + I ++R+
Sbjct: 255 --TGTTVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERN 312
Query: 307 VSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHL 366
V ER + V+C S +K A+ A K++ G +P SGA HD + ++ +
Sbjct: 313 VRLTTERLQEMAPVLC----SEVVKQAAERACKQL-GYPPFWLP---SGAAHDGVQLAPI 364
Query: 367 TKVCSLLCR 375
+ + R
Sbjct: 365 CPIGMIFVR 373
>sp|P77425|ALLC_ECOLI Allantoate amidohydrolase OS=Escherichia coli (strain K12) GN=allC
PE=1 SV=1
Length = 411
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/373 (30%), Positives = 174/373 (46%), Gaps = 33/373 (8%)
Query: 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFD 61
SP + ++ M +GL T D +GN++GR+ G + +L GSH+DTVV+ G D
Sbjct: 33 SPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLD 92
Query: 62 GSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGIL-PVSA 120
G G + A A+ LK+ + G R VEV+A ++EEG RF F GS + G+ P
Sbjct: 93 GQFGALAAWLAIDWLKT--QYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDV 150
Query: 121 LRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGV 180
+ D G + +DA++ + L + + ++E+HIEQG VLE G +GV
Sbjct: 151 RNICDAKGNSFVDAMKACGFTLPNAPLTPRQ----DIKAFVELHIEQGCVLESNGQSIGV 206
Query: 181 VQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRS 240
V I GQ R VT+ G HAGT PM R+D + A R+C
Sbjct: 207 VNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYA-------FSRICHQ----------- 248
Query: 241 NCSTLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQ 300
+ + + LV T G++ P+ NV+PG+ TFT+D R D A +L N +
Sbjct: 249 SVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRA 308
Query: 301 ICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDA 360
IC++ + ++ D V + +L A L + + V+ SGAGHDA
Sbjct: 309 ICDEMDIGIDIDLWMDEEPVPMNKEL--------VATLTELCEREKLNYRVMHSGAGHDA 360
Query: 361 MAMSHLTKVCSLL 373
+ C +
Sbjct: 361 QIFAPRVPTCMIF 373
>sp|O32149|ALLC_BACSU Allantoate amidohydrolase OS=Bacillus subtilis (strain 168) GN=pucF
PE=2 SV=1
Length = 412
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 118/364 (32%), Positives = 186/364 (51%), Gaps = 35/364 (9%)
Query: 12 IRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAIS 71
++ M GL T D +GNV GR+ G + + ++ GSH+DTV++ G +DG+ G++ A+
Sbjct: 46 VKTEMSSFGLETRFDDVGNVFGRLSGTQSPDEVIVTGSHIDTVINGGKYDGAYGVLAAML 105
Query: 72 ALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGIL-PVSALRVSDKSGVT 130
ALK LK T G K+ +E ++ +EEG RF T+ GS + G+ A D+SGV+
Sbjct: 106 ALKQLKET--YGAPKKTLEAVSLCEEEGSRFPMTYWGSGNMTGVFSEQDAKEPRDESGVS 163
Query: 131 VLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRL 190
+ A+ E+ + + Q Y + ++E+HIEQG LE G LG+V IAGQ R
Sbjct: 164 LQTAMHESGFG---KGVFQSAYR-TDISAFVELHIEQGKTLEMSGRDLGIVTSIAGQRRY 219
Query: 191 KVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSS 250
VT+ G HAGT M R+DP+ A++ +I L L D L
Sbjct: 220 LVTLEGECNHAGTTSMKWRKDPLAASSRIIHEL---------LLRSD---------ELPD 261
Query: 251 SLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCI 310
L T G+I++ P+ +NVIPG V F++D+R E ++ + IC ++ + +
Sbjct: 262 ELRLTCGKITAEPNVANVIPGRVQFSIDIRHQHQHVLEQFHQDMVALINGICLQKGIRAV 321
Query: 311 VERKHDANAVMCDADLSSQLKSASY-AALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKV 369
++ V D +LK+A++ AL+ G + E ++SGAGHDA +
Sbjct: 322 IDEYMRIEPVPMD----ERLKAAAFETALE--NGFSCEE---MVSGAGHDAQMIGRRYPA 372
Query: 370 CSLL 373
C L
Sbjct: 373 CMLF 376
>sp|Q57051|Y588_HAEIN Uncharacterized hydrolase HI_0588 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0588 PE=1 SV=1
Length = 411
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 180/363 (49%), Gaps = 35/363 (9%)
Query: 7 RAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGI 66
+A N+I + ++ L D +GN+ R G A+ GSH+DTVV+AG FDG LG
Sbjct: 36 KAHNMIIELCKEYDLSIRRDSIGNLFIRKAGKEDFLPAVAFGSHIDTVVNAGKFDGPLGS 95
Query: 67 ITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGIL---PVSALRV 123
+ + L L+ + + + P+E+I F+ EE RF LGS + GI+ +S+LR
Sbjct: 96 VAGLEIL--LQLCEQNIQTRYPLELIIFTCEESSRFNFATLGSKVMCGIVNQEKLSSLR- 152
Query: 124 SDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQG 183
DK G + +A+ E ++ + Q K D + E+HIEQGP LE G +GVV G
Sbjct: 153 -DKQGKGLSEAMAEVGMNF--NLVNQAKRDAKEFKCFFELHIEQGPRLENEGKTIGVVTG 209
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCS 243
IA R V ++G H+G M R D + +EL + +ER +
Sbjct: 210 IAAPIRAIVKIKGQADHSGATAMHYRHDALLGGSELSLAIER-----------------A 252
Query: 244 TLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICE 303
+++ S V TVG I++ P NV+PG VD+R R++V L ++ ++ E
Sbjct: 253 AIQA-GHSTVATVGNITAKPGVMNVVPGYCELLVDIRGTHVQARDSVFELLQEEISKVSE 311
Query: 304 KRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAM 363
KR + ++ N ++ ++ +Q+ +++ G + +P SGAGHDAM M
Sbjct: 312 KRGLLIELQLISKDNPIILPENMVNQIAETAHS-----LGYSYEIMP---SGAGHDAMHM 363
Query: 364 SHL 366
+ L
Sbjct: 364 ATL 366
>sp|A0QZE3|Y3995_MYCS2 Putative hydrolase MSMEG_3995/MSMEI_3903 OS=Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155) GN=MSMEG_3995 PE=1 SV=1
Length = 438
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 137/278 (49%), Gaps = 24/278 (8%)
Query: 10 NLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIIT- 68
+ + +W+ G VD +GN+ G +E N A +L+GSHLD+ G FDG+ G++
Sbjct: 54 DWLSRWLRTRGFSVEVDPIGNLFGLLE-FNPGAPYVLVGSHLDSQPRGGRFDGAYGVLAG 112
Query: 69 AISALKVLKSTGKLGKLKR-PVEVIAFSDEEGVRFQSTFLGSAALAGILPVS-ALRVSDK 126
A++A + + + G R V V+ + +EEG RF+ + +GSA G L + AL +D
Sbjct: 113 AVAADRTRRYVTRSGFTPRYNVAVVDWFNEEGSRFKPSMMGSAVFTGTLDLEEALNTTDD 172
Query: 127 SGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAG 186
GV+V DAL +I+ + + P + Y E+HIEQG LE +G+V
Sbjct: 173 DGVSVRDALA--AINGIGDREVFSSTGPRQLAAYAEIHIEQGRELEKNNVTIGLVDRTWA 230
Query: 187 QTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLE 246
+ ++ V G QGH G + RQD + AA ++V L + +
Sbjct: 231 ANKYELNVVGIQGHTGATAIEDRQDALLGAALIVVALRDIA------------------D 272
Query: 247 SLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDD 284
L + G+++ P++ V+P EV +DLR+ +D
Sbjct: 273 EFGEELHTSCGQLTVLPNSPVVVPREVHMHLDLRSDND 310
>sp|B1MZM9|DAPEL_LEUCK N-acetyldiaminopimelate deacetylase OS=Leuconostoc citreum (strain
KM20) GN=LCK_01154 PE=3 SV=1
Length = 387
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 18/108 (16%)
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCS 243
AG LKV V G+ GHA ++ +DP+ AAELI+ L+ + D ++
Sbjct: 179 FAGTAELKVDVIGTGGHAAYPHLA--KDPIVIAAELIIQLQTVVSRSVDPIA-------- 228
Query: 244 TLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVL 291
V +VG I+ A+NVIP +V F +R++ G ET+L
Sbjct: 229 -------GGVVSVGVINGG-FANNVIPDQVHFEGTVRSMTRTGLETML 268
>sp|P45493|HIPO_CAMJE Hippurate hydrolase OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=hipO PE=3 SV=2
Length = 383
Score = 38.9 bits (89), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 30/159 (18%)
Query: 170 VLEWVGFPLG------VVQG--IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIV 221
V W P G + +G +A + V G GH G+ P + DP+ AA+ LIV
Sbjct: 157 VFGWHNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGH-GSAPEKAK-DPIYAASLLIV 214
Query: 222 LLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRA 281
L+ + D +S V ++G ++ A N+IP T + +RA
Sbjct: 215 ALQSIVSRNVD---------------PQNSAVVSIGAFNAG-HAFNIIPDIATIKMSVRA 258
Query: 282 IDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAV 320
+D+ R+ ++Y+IC+ + + +E K + N V
Sbjct: 259 LDNETRKLT----EEKIYKICKGIAQANDIEIKINKNVV 293
>sp|P23658|GUNC_BUTFI Cellodextrinase OS=Butyrivibrio fibrisolvens GN=ced1 PE=3 SV=1
Length = 547
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 266 SNVIPGEVTFTVDLRAIDDAGR--------ETVLYELSNQLYQICEKRSVSCIVERKHDA 317
++ I GE T+ D A+ + G+ E+VL+ +SN Y K C
Sbjct: 48 TDEISGEDTYVADFSALTEEGKYKIVADGQESVLFSISNDAYDKLMKDICKCFY------ 101
Query: 318 NAVMCDADLSSQLKSASYAALKRMTGAT---QHEIPVIMSGAGHDA 360
+ C LS + Y MT AT + PV ++G HDA
Sbjct: 102 -YLRCGDALSKEFAGEYYHKPCHMTKATVYGEDVEPVDVTGGWHDA 146
>sp|Q9V1I3|LYSK_PYRAB Acetyl-lysine deacetylase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=lysK PE=3 SV=1
Length = 337
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 8 AGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTV 54
A I++ +E+ G++ ++D +GNV G EG +L+ H+DTV
Sbjct: 28 AAKFIKEKLEEYGVKAYIDKVGNVIGVKEG---EGPLILLAGHVDTV 71
>sp|Q98D57|DAPE_RHILO Succinyl-diaminopimelate desuccinylase OS=Rhizobium loti (strain
MAFF303099) GN=dapE PE=3 SV=1
Length = 397
Score = 35.4 bits (80), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 20/116 (17%)
Query: 192 VTVRGSQGHAGTVPMSMRQDPMTAAAELI--VLLERLCKHPKDFLSYDGRSNCSTLESLS 249
+TV G QGHA ++ +P+ L+ +L K KDF + LE S
Sbjct: 193 ITVNGRQGHAAYPQLA--DNPVRGLMGLVDALLHPVFDKGTKDF-------QPTNLEVTS 243
Query: 250 SSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKR 305
VG A+NVIP + T T ++R D ETV E+ N+L Q +++
Sbjct: 244 ----IDVGN-----PATNVIPAKATATFNIRFNDTWTAETVQAEIHNRLDQAAKRK 290
>sp|Q9SWX9|ILL5_ARATH IAA-amino acid hydrolase ILR1-like 5 OS=Arabidopsis thaliana
GN=ILL5 PE=3 SV=1
Length = 435
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCS 243
+AG R K T+ G GHA ++ DP+ AA+ +I+ L+ L D L S
Sbjct: 212 MAGSGRFKATISGKGGHAALPQFAI--DPVLAASNVILSLQHLVSREADPLD----SQVV 265
Query: 244 TLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAI 282
T+ + S A NVIP VT RA+
Sbjct: 266 TVATFEGS------------DAFNVIPDSVTIGGTFRAL 292
>sp|P54955|YXEP_BACSU Uncharacterized hydrolase YxeP OS=Bacillus subtilis (strain 168)
GN=yxeP PE=1 SV=2
Length = 380
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 20/115 (17%)
Query: 178 LGVVQG--IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLS 235
+GV +G +A R ++ ++G GHAG S+ DP+ AA ++I L+ +
Sbjct: 168 IGVKEGPLMASVDRFEIVIKGKGGHAGIPNNSI--DPIAAAGQIISGLQSVVSR------ 219
Query: 236 YDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETV 290
N S+L++ S + V +SW NVIP + +R R+ V
Sbjct: 220 -----NISSLQNAVVS-ITRVQAGTSW----NVIPDQAEMEGTVRTFQKEARQAV 264
>sp|O59402|LYSK_PYRHO Acetyl-lysine deacetylase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=lysK PE=3 SV=1
Length = 325
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 8 AGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTV 54
A I++ E+ G+ +VD++GNV R G +L+ H+DTV
Sbjct: 27 AAKFIKEKFEEYGIEAYVDNVGNVIARKSG---EGPLVLLAGHIDTV 70
>sp|P47125|I23O_YEAST Indoleamine 2,3-dioxygenase family protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BNA2 PE=1
SV=1
Length = 453
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 100 VRFQSTFLGSAALA-GILPVSALRVSDKSGVTVLDALR--ENSIDIAEESLLQ--LKYDP 154
VRF+ +GSA L G+ + A+R DK V+D L +I+ ++L++ LK +P
Sbjct: 187 VRFEK--IGSACLNHGLQILRAIRSGDKGDANVIDGLEGLAATIERLSKALMEMELKCEP 244
Query: 155 ASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRL 190
+ I + + +G P GV G GQ R+
Sbjct: 245 NVFYFKIRPFLAGWTNMSHMGLPQGVRYGAEGQYRI 280
>sp|B0BYP8|HIS5_ACAM1 Imidazole glycerol phosphate synthase subunit HisH OS=Acaryochloris
marina (strain MBIC 11017) GN=hisH PE=3 SV=1
Length = 214
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 28 LGNVHGRVEGLNASAQALLIGSHLDTVVDA--------GIFDGSLGIITAISALKVLKST 79
+GN+H +GL + ++ + +V A G FD ++ + + + V++
Sbjct: 11 MGNLHSACKGLQEAGTQTIVSDRPEDLVSADAVVLPGVGAFDPAMQHLRSRQLIPVIQDI 70
Query: 80 GKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENS 139
GK P I + + F+ + G+ A GI+P + R + G+T+ + N
Sbjct: 71 LASGK---PFLGICLGLQ--ILFEGSEEGTEAGLGIIPGTVKRFQSEPGITI-PHMGWNQ 124
Query: 140 IDIAEESLLQLKYDPASVWGYI 161
++ + L ++ PA W Y
Sbjct: 125 LEYQQPDLPLWRHSPAQPWVYF 146
>sp|C4R628|M28P1_PICPG Probable zinc metalloprotease PAS_chr3_0953 OS=Komagataella
pastoris (strain GS115 / ATCC 20864) GN=PAS_chr3_0953
PE=3 SV=1
Length = 990
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 30 NVHGRVEGLNASAQALLIGSHLDTV-VDAGIFDGSLGIITAISALKVLKSTGKLGKLKRP 88
NV RV+G + S +ALLI +H D+V G D +GI + + L+ L K +RP
Sbjct: 209 NVLVRVKGTDPSLEALLISAHYDSVSTSYGTTDDGMGIASMLGILEHLADK----KTERP 264
Query: 89 VEVIAFS 95
I F+
Sbjct: 265 KRDIIFN 271
>sp|A9ILD7|DAPE_BART1 Succinyl-diaminopimelate desuccinylase OS=Bartonella tribocorum
(strain CIP 105476 / IBS 506) GN=dapE PE=3 SV=1
Length = 390
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 192 VTVRGSQGHAGTVPMSMRQ-DPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSS 250
+TV+G QGH V R +P+ A++LI L ++ G N S
Sbjct: 192 ITVKGRQGH---VAFPERAANPLPLASKLIQALTQIALD-------QGTENFQ-----PS 236
Query: 251 SLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRS 306
+L T I + A NVIP + T ++R D +ET++ E+ +L + EK +
Sbjct: 237 NLELTT--IDTGNLAVNVIPAQTTVRFNIRYNDLWTKETLMEEIEKRLSLVQEKNN 290
>sp|A3LW86|M28P1_PICST Probable zinc metalloprotease PICST_46351 (Fragment)
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PICST_46351 PE=3
SV=2
Length = 937
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 29 GNVHGRVEGLNASAQALLIGSHLDTVVDA-GIFDGSLGIITAISALKVLKSTGKLGKLKR 87
N+ R+ G + + ALL+ +H D+V + G+ D +GI + + L TGK R
Sbjct: 133 NNLVVRINGTDETLPALLLSAHFDSVPSSFGVTDDGMGIASLLGVLYYY--TGKSTARPR 190
Query: 88 PVEVIAFSDEE--GVRFQSTFLGSAALAGI 115
V+ F+++E G+ ++FL G+
Sbjct: 191 RTIVLNFNNDEEFGLYGATSFLSHPWATGV 220
>sp|Q1GTU1|G6PI_SPHAL Glucose-6-phosphate isomerase OS=Sphingopyxis alaskensis (strain
DSM 13593 / LMG 18877 / RB2256) GN=pgi PE=3 SV=1
Length = 501
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 11/119 (9%)
Query: 247 SLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQI---CE 303
SL SS+ W + ++++ G R D A +L ++Q+Y C+
Sbjct: 250 SLWSSIGFPAALALGWDAFADLLEGAAEMDRHFRLADGADNICLLAAFADQVYANRLGCQ 309
Query: 304 KRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGA--TQHEIPVIMSGAGHDA 360
R+V ER A + ++ S KS + + GA QH PV G G DA
Sbjct: 310 TRAVFAYDERLRLLPAYLQQLEMESNGKSVT------LDGAPLAQHSAPVTWGGVGTDA 362
>sp|Q851L6|ILL4_ORYSJ IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sativa subsp.
japonica GN=ILL4 PE=2 SV=1
Length = 414
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 27/136 (19%)
Query: 176 FPLGVVQG-----IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHP 230
P GVV +AG R T+ G GHA +++ DP+ AA+ ++ L+++
Sbjct: 174 LPAGVVGSRPGPFLAGSARFTATITGKGGHAAEPHLAV--DPIVAASSAVLSLQQIVARE 231
Query: 231 KDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETV 290
+ L V +V I A NVIP VT LR++ G
Sbjct: 232 TNPL---------------QGAVVSVTTIKGG-EAFNVIPESVTLGGTLRSMTTDG---- 271
Query: 291 LYELSNQLYQICEKRS 306
L L N++ ++ E ++
Sbjct: 272 LSYLMNRIREVIEGQA 287
>sp|Q0CJD8|MDV1_ASPTN Mitochondrial division protein 1 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=mdv1 PE=3 SV=2
Length = 654
Score = 31.6 bits (70), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 9 GNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIIT 68
G ++ ++D +R W ++G G +EG NAS + L I D +V G D S+ +
Sbjct: 333 GTMVSAALDDT-VRVWDLNVGRCTGLLEGHNASVRCLQIE---DNIVATGSMDASVKLWD 388
Query: 69 AISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFL 107
L +S + G++ + E +D+ FQST L
Sbjct: 389 ----LSRARSVTRDGRVNKDDEGEDTADDAHELFQSTTL 423
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,377,677
Number of Sequences: 539616
Number of extensions: 5355708
Number of successful extensions: 14899
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 14855
Number of HSP's gapped (non-prelim): 38
length of query: 381
length of database: 191,569,459
effective HSP length: 119
effective length of query: 262
effective length of database: 127,355,155
effective search space: 33367050610
effective search space used: 33367050610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)