BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016854
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OB0|A Chain A, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|B Chain B, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|C Chain C, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2PSW|A Chain A, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|B Chain B, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|C Chain C, Human Mak3 Homolog In Complex With Coa
Length = 170
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 321 VMPMTFIQSSRMGNTHFPVSNRDKTYFQRQRLSKMTLNVLRNQIGAAPICC 371
V P Q R+ FPVS DK Y + ++ N I +CC
Sbjct: 12 VTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCC 62
>pdb|3TFY|A Chain A, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|B Chain B, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|C Chain C, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
Length = 169
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 321 VMPMTFIQSSRMGNTHFPVSNRDKTYFQRQRLSKMTLNVLRNQIGAAPICC 371
V P Q R+ FPVS DK Y + ++ N I +CC
Sbjct: 11 VTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCC 61
>pdb|2XGN|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XGN|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XH9|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XH9|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
Length = 458
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 273 PDSIEWSDYFMNTHIPGVEKLLQQKRSFPKTKVFRSGHVPSYKTITERVMP 323
PD + W+D H PGV+ + R P GH + + ER MP
Sbjct: 126 PDMVTWNDVEETLHTPGVQHSVYAVRLTP------DGHEVLHASAPERPMP 170
>pdb|2XFS|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XFS|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XFT|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XFT|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
Length = 458
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 273 PDSIEWSDYFMNTHIPGVEKLLQQKRSFPKTKVFRSGHVPSYKTITERVMP 323
PD + W+D H PGV+ + R P GH + + ER MP
Sbjct: 126 PDMVTWNDVEETLHTPGVQHSVYAVRLTP------DGHEVLHASAPERPMP 170
>pdb|2XEP|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XEP|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XF3|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XF3|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
Length = 458
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 273 PDSIEWSDYFMNTHIPGVEKLLQQKRSFPKTKVFRSGHVPSYKTITERVMP 323
PD + W+D H PGV+ + R P GH + + ER MP
Sbjct: 126 PDMVTWNDVEETLHTPGVQHSVYAVRLTP------DGHEVLHASAPERPMP 170
>pdb|1WR8|A Chain A, Crystal Structure Of Hypothetical Protein Ph1421 From
Pyrococcus Horikoshii.
pdb|1WR8|B Chain B, Crystal Structure Of Hypothetical Protein Ph1421 From
Pyrococcus Horikoshii
Length = 231
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 150 VTLVSILDYGFVYFTKKPWINKQGKPVKVSKII 182
+ LV++ D GF KKPWINK K S+ +
Sbjct: 134 LNLVAV-DSGFAIHVKKPWINKGSGIEKASEFL 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,312,581
Number of Sequences: 62578
Number of extensions: 406143
Number of successful extensions: 892
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 7
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)