BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016855
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 145/358 (40%), Positives = 214/358 (59%), Gaps = 18/358 (5%)
Query: 26 LIEFQGGYRGFYSKNTLT---LSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGIN 82
+I F+ GY G K + T L V +IH GGTIL +SRG D ++VD +E G+N
Sbjct: 132 VIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVN 191
Query: 83 QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA 142
++ +GGDGTQ+GA +I +E ++RG+ ++V G+PKTIDND++ ++FGF TAVE+A +A
Sbjct: 192 ILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQA 251
Query: 143 INAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEF 202
I AA+ E S GVG+VKLMGR SGFI+ A +AS + CL+PE+P + +
Sbjct: 252 IRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSL 308
Query: 203 IERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKV 262
+ER+ + VI+VAEG GQ++ S DASGN+ L+DIG+ LT+K+K F K
Sbjct: 309 LERRFCHSRSCVIIVAEGFGQDWGRGS----GGYDASGNKKLIDIGVILTEKVK-AFLKA 363
Query: 263 QKMMI---NMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHA 319
K +KYIDP+YMIRA P + +D ++C LA AVH AMAG TG + ++ +
Sbjct: 364 NKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYI 423
Query: 320 YIPIARVTETQKTVKLTDRMWARLLASTNQPSFLNCSEVLHHQEKAGRKTTEVINSER 377
+PI T ++ + L ++W ++ T S+V ++ R+ E IN R
Sbjct: 424 LVPIKVATSVRRVLDLRGQLWRQVREITVDLG----SDVRLARKLEIRRELEAINRNR 477
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 103/200 (51%), Gaps = 23/200 (11%)
Query: 32 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR-----GGHDTNKIVDNIEDRGINQVYI 86
GY G + N L V DI RGGTIL T+R K ++ ++ GI + +
Sbjct: 40 GYAGLIAGNIKKLEVGDVGDIIHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVV 99
Query: 87 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 146
IGGDG+ +GA K++ + G G+P TIDNDI D + GFDTA+ AI+
Sbjct: 100 IGGDGSYQGA----KKLTEHGF--PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI 153
Query: 147 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQ 206
S E ++++MGR++G I++Y+ LA + LIPE+ + + + I R
Sbjct: 154 RDTATSHER-TWVIEVMGRHAGDIALYSGLAG-GAETILIPEADYDMN------DVIARL 205
Query: 207 LK--ENG--HMVIVVAEGAG 222
+ E G H +I+VAEG G
Sbjct: 206 KRGHERGKKHSIIIVAEGVG 225
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 23/200 (11%)
Query: 32 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR-----GGHDTNKIVDNIEDRGINQVYI 86
GY G + N L V DI RGGTIL T+R K ++ ++ GI + +
Sbjct: 40 GYAGLIAGNIKKLEVGDVGDIIHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVV 99
Query: 87 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 146
IGGDG+ +GA K++ + G G+P TIDNDI D + GFDTA+ AI+
Sbjct: 100 IGGDGSYQGA----KKLTEHGF--PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI 153
Query: 147 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQ 206
S E ++++MGR++G I++++ LA + LIPE+ + + + I R
Sbjct: 154 RDTATSHERTY-VIEVMGRHAGDIALWSGLAG-GAETILIPEADYDMN------DVIARL 205
Query: 207 LK--ENG--HMVIVVAEGAG 222
+ E G H +I+VAEG G
Sbjct: 206 KRGHERGKKHSIIIVAEGVG 225
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 23/200 (11%)
Query: 32 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR-----GGHDTNKIVDNIEDRGINQVYI 86
GY G + N L V DI RGGTIL T+R K ++ ++ GI + +
Sbjct: 40 GYAGLIAGNIKKLEVGDVGDIIHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVV 99
Query: 87 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 146
IGGDG+ +GA K++ + G G+P TIDNDI D + GFDTA+ AI+
Sbjct: 100 IGGDGSYQGA----KKLTEHGF--PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI 153
Query: 147 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQ 206
S E ++++MGR++G I++++ LA + LIPE+ + + + I R
Sbjct: 154 RDTATSHERTY-VIEVMGRHAGDIALWSGLAG-GAETILIPEADYDMN------DVIARL 205
Query: 207 LK--ENG--HMVIVVAEGAG 222
+ E G H +I+VAEG G
Sbjct: 206 KRGHERGKKHSIIIVAEGVG 225
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 139/312 (44%), Gaps = 53/312 (16%)
Query: 32 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNKIVDNIEDRGINQVYI 86
GY G S L V DI RGGT L T+R K + N++ GI + +
Sbjct: 40 GYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVV 99
Query: 87 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 146
IGGDG+ GA K++ + G G+P TIDNDI D + GFDTA+ AI+
Sbjct: 100 IGGDGSYMGA----KKLTEHGF--PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI 153
Query: 147 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQ 206
S E ++++MGR++G I+++A LA + LIPE+ + + E I R
Sbjct: 154 RDTATSHERTY-VIEVMGRHAGDIALWAGLAG-GAESILIPEADY------DMHEIIARL 205
Query: 207 LK--ENG--HMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKV 262
+ E G H +I+VAEG G G+ ++I++ T +
Sbjct: 206 KRGHERGKKHSIIIVAEGVGS------------------------GVEFGKRIEEE-TNL 240
Query: 263 QKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIP 322
+ + + +I R + +D + + L AV + G G VG N++
Sbjct: 241 ETRVSVLGHIQ-----RGGSPSAADRVLASRLGAYAVELLLEGKGGRCVGIQNNKLVDHD 295
Query: 323 IARVTETQKTVK 334
I + ET+ TV+
Sbjct: 296 IIEILETKHTVE 307
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 13/168 (7%)
Query: 32 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH--DTN---KIVDNIEDRGINQVYI 86
GY G Y + L V+D+ RGGT L ++R D N ++N++ RGI+ + +
Sbjct: 41 GYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVV 100
Query: 87 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 146
IGGDG+ GA + + + G+P TIDNDI D + GF TA+ AI+
Sbjct: 101 IGGDGSYMGAMRLTE------MGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRL 154
Query: 147 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE 194
+ S + +V++MGRY G +++ A +A + ++PE F E
Sbjct: 155 R-DTSSSHQRISVVEVMGRYCGDLTLAAAIAG-GCEFVVVPEVEFSRE 200
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 20/227 (8%)
Query: 18 VKHLHHNS-LIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGG-TILRTSRGGHDT----NK 71
+K + NS L F+GG G + + L+ ++N GG I+ + R +T NK
Sbjct: 98 IKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNK 157
Query: 72 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKS 129
+ ++ +N + IIGGD + AA++ + +K G + V G+PKTID D+ I+ S
Sbjct: 158 ALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEIS 217
Query: 130 FGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPES 189
FGFD+A + I + S + VKLMGR + +++ L + + C++ E
Sbjct: 218 FGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALKTHP-NICIVSEE 276
Query: 190 PFYLEGPGGLFEFIE--------RQLKENGHMVIVVAEGAGQEFVAQ 228
L L E I+ R L + V++V EG EF+ +
Sbjct: 277 --VLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGL-IEFIPE 320
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 25/208 (12%)
Query: 32 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR---GGHDTNKI--VDNIEDRGINQVYI 86
G+ G + + L + V + GT L ++R + ++ ++ ++ GI+ V +
Sbjct: 40 GFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVV 99
Query: 87 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 146
IGGDG+ GA ++ + G G+P TIDNDI D + G+DTA A AI+
Sbjct: 100 IGGDGSYHGAL----QLTRHGFNSI--GLPGTIDNDIPYTDATIGYDTACMTAMDAIDKI 153
Query: 147 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER- 205
+ S + V IV +MGR G I+M +A D +IPE P+ +E E R
Sbjct: 154 R-DTASSHHRVFIVNVMGRNCGDIAMRVGVAC-GADAIVIPERPYDVE------EIANRL 205
Query: 206 -QLKENG--HMVIVVAEG--AGQEFVAQ 228
Q +E+G H ++VVAEG +F+A+
Sbjct: 206 KQAQESGKDHGLVVVAEGVMTADQFMAE 233
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 24/222 (10%)
Query: 52 IHKRGGT-------ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE 104
IH GG + S + ++++ I + GG +Q A + + +
Sbjct: 69 IHTPGGAFGSCRYKLKNISENQREYERLIEVFRAHDIGYFFYNGGGDSQDTAYKVSQLAD 128
Query: 105 KRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV---ENGVGIVK 161
+ G + G+PKT+DND+ D GF + + + A ++++S+ V I++
Sbjct: 129 RMGYPITCIGVPKTVDNDLPFTDCCPGFGSVAKYIATSTLEASLDIKSMCETSTKVFILE 188
Query: 162 LMGRYSGFISMYATLASRD----VDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVV 217
+MGR++G+I+ LA + L PE PF E E +++ +++ G+ V+V
Sbjct: 189 VMGRHAGWIAAAGGLAGQSEGEPPHVILFPEIPFNRE---KFLERVDQCVRDYGYCVVVA 245
Query: 218 AEGAGQE---FVAQSMPAVDEKDASGNRLLLDIGLWLTQKIK 256
+EGA E FVA + KDA G+ L + L +K
Sbjct: 246 SEGAQYEDGRFVADA----GAKDAFGHTQLGGVAPALANMVK 283
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 30/170 (17%)
Query: 75 NIEDRGINQVYIIGGDGTQKGA-----------------ALIYKEVEKRGLQVAVAGIPK 117
N+ RGI + +IGGDG+ GA I E R + + G+
Sbjct: 104 NLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVG 163
Query: 118 TIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLA 177
+IDND D + G D+A+ ++A +S + ++++MGR+ G++++ +L
Sbjct: 164 SIDNDFCGTDMTIGTDSALHRITEIVDAITTTAQSHQRTF-VLEVMGRHCGYLALVTSL- 221
Query: 178 SRDVDCCLIPESPFYLEGPGGLFE-FIERQLKENGHM-----VIVVAEGA 221
S D IPE P P +E + R+L E +I+VAEGA
Sbjct: 222 SCGADWVFIPECP-----PDDNWEDHLCRRLSETRTRGSRLNIIIVAEGA 266
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 71 KIVDNIEDRGINQVYIIGG-DGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKS 129
+I NI I + IIGG + G L+ + L + IP T+ N++ D S
Sbjct: 480 QISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFS 539
Query: 130 FGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFIS 171
G DTA+ + + V I++ MG Y G+++
Sbjct: 540 VGADTALNTICTTCDRIKQSAAGTKRRVFIIETMGGYCGYLA 581
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 24/196 (12%)
Query: 71 KIVDNIEDRGINQVYIIGGDGTQKGA--------ALIYKEVEKRGL---------QVAVA 113
K N+ D GI+ + + GGDG+ GA +LI + ++ + + +
Sbjct: 267 KACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNIC 326
Query: 114 GIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMY 173
G +IDND++ D + G ++++ RAI+ S IV++MGR+ G++ +
Sbjct: 327 GAVGSIDNDMSSTDATIGAFSSLDRICRAIDYIDATANSHSRAF-IVEVMGRHCGWLGLL 385
Query: 174 ATLASRDVDCCLIPESPF-YLEGPGGLFEFI-ERQLKENGHMVIVVAEGA-GQEFVAQSM 230
A LA+ D LIPE P E + + + + + + +++VAEGA + S
Sbjct: 386 AGLAT-SADYILIPEKPASSREWQDQMCDIVGKHRARGKRKTIVIVAEGAISNDLSPISC 444
Query: 231 PAVDEKDASGNRLLLD 246
V KD NRL LD
Sbjct: 445 DQV--KDVLVNRLGLD 458
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Query: 108 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 167
L++ + IP TI N++ + S G DT + + + N V +V++ G S
Sbjct: 691 LRIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNS 750
Query: 168 GFISMYATLASRDVDCCLIPESPFYLE----GPGGLFE-FIERQLKENGHMVIVVAEGAG 222
G+I+ +A LA +PE L L E F Q K +I+ +E A
Sbjct: 751 GYIATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLILKSENAS 809
Query: 223 QEFVAQSMPAVDEKDASG 240
+ + + + + +ASG
Sbjct: 810 KVLTTEVISTIIDDEASG 827
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 39/226 (17%)
Query: 15 PLFVKHLHHNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVD 74
P ++K H + RG+ ++ + + KR G +L
Sbjct: 51 PEYIKEFHWEDV-------RGWSAEGGTNIGTARCMEFKKREGRLLGAQ----------- 92
Query: 75 NIEDRGINQVYIIGGDGTQKGAAL-----------------IYKEVEKRGLQVAVAGIPK 117
++ + G++ + + GGDG+ GA L I E +R + + G
Sbjct: 93 HLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVG 152
Query: 118 TIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLA 177
+IDND++ D + G +A++ +AI+ S +V++MGR G++++ A +A
Sbjct: 153 SIDNDMSTTDATIGAYSALDRICKAIDYVEATANSHSRAF-VVEVMGRNCGWLALLAGIA 211
Query: 178 SRDVDCCLIPESPF-YLEGPGGLFEFIERQLKENGH-MVIVVAEGA 221
+ D IPE P E + + + + ++VVAEGA
Sbjct: 212 T-SADYIFIPEKPATSSEWQDQMCDIVSKHRSRGKRTTIVVVAEGA 256
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 22/174 (12%)
Query: 63 SRGGHD--TNKIVDNIEDRGINQVY----------IIGGDGTQKGAALIYKEVEKR-GLQ 109
SRGG + TN++ D G+ Y I+GG + + + E +
Sbjct: 455 SRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFR 514
Query: 110 VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGF 169
+ + IP T+ N++ + S G DTA+ + S +V G SG+
Sbjct: 515 IPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGY 574
Query: 170 ISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQ 223
++ YA+LA +PE LE E++ + ++ AEG G+
Sbjct: 575 LATYASLAV-GAQVSYVPEEGISLEQLSEDIEYLAQSFEK--------AEGRGR 619
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 40/222 (18%)
Query: 56 GGTILRTSRG-----GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-------- 102
GGT++ T+R + N+ +GI+ + + GGDG+ GA L E
Sbjct: 70 GGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDEL 129
Query: 103 -VEKRGLQVAVA--------GIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 153
E R + VA G+ +IDND++ D + G +A+E ++ +S
Sbjct: 130 VAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATAKSH 189
Query: 154 ENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGG-----LFEFIER-QL 207
+V++MGR+ G++++ A +A+ D IPE P G L E +R +
Sbjct: 190 SRAF-VVEVMGRHCGWLALMAGIAT-GADYIFIPERAV----PHGKWQDELKEVCQRHRS 243
Query: 208 KENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGL 249
K + I+VAEGA + + + A D KDA L+++GL
Sbjct: 244 KGRRNNTIIVAEGALDDQL-NPVTANDVKDA-----LIELGL 279
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
Query: 49 VNDIHKRGGTILRTSR--GGHDTNKIVDNIEDRGINQVYIIGG-DGTQKGAALIYKEVEK 105
V + H GG+ + T+R D I + ++ + I+GG +G + L +
Sbjct: 450 VENWHNLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQH 509
Query: 106 RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGR 165
+ + IP T+ N++ + S G DT + + + V + ++ G
Sbjct: 510 PIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRRRVFVCEVQGG 569
Query: 166 YSGFISMYATL 176
+SG+I+ + L
Sbjct: 570 HSGYIASFTGL 580
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 26/190 (13%)
Query: 56 GGTILRTSRGGHDTNK-----IVDNIEDRGINQVYIIGGDGTQKGAALIYKE-------- 102
GGTI+ T+R + N+ GI+ + + GGDG+ GA L KE
Sbjct: 275 GGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKEL 334
Query: 103 -----VEKRGLQ----VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 153
+ K + + + G+ +IDND+ D + G +++E ++ S
Sbjct: 335 LGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIELVDYIDATAASH 394
Query: 154 ENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGH- 212
+V++MGR+ G++ + + +A+ D IPE P + + + +E G
Sbjct: 395 SRAF-VVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNWKDDLKKVCLRHREKGRR 452
Query: 213 -MVIVVAEGA 221
++VAEGA
Sbjct: 453 KTTVIVAEGA 462
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 10/168 (5%)
Query: 49 VNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR 106
V D H GG+ + T+R D + + + + IIGG + +Y+ R
Sbjct: 655 VEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGG---FEAFTALYELDAAR 711
Query: 107 G----LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKL 162
+ + +P T+ N++ + S G DT + +A + +V++
Sbjct: 712 AQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRRTFVVEV 771
Query: 163 MGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 210
G YSG+++ YA L + + PE+P L+ E + R +E+
Sbjct: 772 QGGYSGYLASYAGLITGAL-AVYTPENPINLQTVQEDIELLTRTYEED 818
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 14/115 (12%)
Query: 115 IPKTIDNDIAVIDKSFGFDT-----AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGF 169
+PKT+DND+ + D GF + AV + + + A + S + V ++++MGR++G+
Sbjct: 139 VPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTK--VFVLEVMGRHAGW 196
Query: 170 ISMYATLAS---RDVDCC-LIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEG 220
I+ LAS R++ L PE F + ++ +K+ G+ +VV+EG
Sbjct: 197 IAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKFGYCSVVVSEG 248
>pdb|1VP8|A Chain A, Crystal Structure Of An AlphaBETA DOMAIN OF A PUTATIVE
PYRUVATE Kinase (Af0103) From Archaeoglobus Fulgidus Dsm
4304 At 1.30 A Resolution
Length = 201
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 21/113 (18%)
Query: 33 YRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT 92
+ GF + T P+V ++ KRG I+R S I+ +E R I++ +GG
Sbjct: 75 HTGFVREGENTXPPEVEEELRKRGAKIVRQSH-------ILSGLE-RSISRK--LGGVSR 124
Query: 93 QKGAALIYKEVEKRGLQVAV---------AGIPKTIDNDIAVIDKSFGFDTAV 136
+ A + + GL+V V IP I+ +AV +S G DTAV
Sbjct: 125 TEAIAEALRSLFGHGLKVCVEITIXAADSGAIP--IEEVVAVGGRSRGADTAV 175
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 203 IERQLKENGHMVIVVAEGAGQEF-VAQSMPAVDEKDASGNRLLLDIGLW 250
++R L +NGH +I++AEG A P+ ++ N+++ I LW
Sbjct: 324 VDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELW 372
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 203 IERQLKENGHMVIVVAEGAGQEF-VAQSMPAVDEKDASGNRLLLDIGLW 250
++R L +NGH +I++AEG A P+ ++ N+++ I LW
Sbjct: 324 VDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELW 372
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 203 IERQLKENGHMVIVVAEGAGQEF-VAQSMPAVDEKDASGNRLLLDIGLW 250
++R L +NGH +I++AEG A P+ ++ N+++ I LW
Sbjct: 324 VDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELW 372
>pdb|2DM4|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
SorlaLR11
Length = 108
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 249 LWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDN 288
+W +Q+ +FT+++ +++N Y T + A+ S G N
Sbjct: 54 MWASQRAASNFTEIKNLLVNTLY---TVRVAAVTSRGIGN 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,496,682
Number of Sequences: 62578
Number of extensions: 499705
Number of successful extensions: 1278
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1222
Number of HSP's gapped (non-prelim): 40
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)