Query 016855
Match_columns 381
No_of_seqs 165 out of 1318
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:25:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02564 6-phosphofructokinase 100.0 3.1E-97 7E-102 753.3 38.3 361 4-364 92-460 (484)
2 PTZ00286 6-phospho-1-fructokin 100.0 1.9E-94 4E-99 733.9 35.9 355 4-364 92-455 (459)
3 PRK06830 diphosphate--fructose 100.0 6E-94 1.3E-98 726.6 36.4 347 4-355 85-442 (443)
4 PLN02884 6-phosphofructokinase 100.0 1.6E-93 3.4E-98 719.0 36.4 344 4-353 58-411 (411)
5 PRK06555 pyrophosphate--fructo 100.0 5.2E-88 1.1E-92 674.2 35.5 338 3-351 7-400 (403)
6 PRK14072 6-phosphofructokinase 100.0 1.5E-85 3.3E-90 664.7 32.7 340 3-355 7-397 (416)
7 PRK14071 6-phosphofructokinase 100.0 9.3E-85 2E-89 648.5 31.6 320 3-342 8-350 (360)
8 TIGR02483 PFK_mixed phosphofru 100.0 3.6E-84 7.8E-89 636.1 30.2 305 5-327 5-324 (324)
9 cd00363 PFK Phosphofructokinas 100.0 2.8E-83 6.1E-88 634.0 33.5 315 4-343 5-336 (338)
10 cd00763 Bacterial_PFK Phosphof 100.0 2.9E-83 6.4E-88 627.6 30.7 291 4-335 5-307 (317)
11 TIGR02482 PFKA_ATP 6-phosphofr 100.0 5.8E-83 1.3E-87 621.1 29.7 285 4-326 4-300 (301)
12 PRK03202 6-phosphofructokinase 100.0 2.4E-82 5.2E-87 621.9 31.3 292 3-335 5-309 (320)
13 TIGR02478 6PF1K_euk 6-phosphof 100.0 1.3E-79 2.9E-84 656.6 33.8 341 4-370 5-381 (745)
14 cd00764 Eukaryotic_PFK Phospho 100.0 4.9E-79 1.1E-83 649.7 32.0 338 4-367 8-381 (762)
15 COG0205 PfkA 6-phosphofructoki 100.0 1.7E-78 3.6E-83 596.2 28.4 299 4-332 7-318 (347)
16 TIGR02477 PFKA_PPi diphosphate 100.0 7.9E-76 1.7E-80 607.4 32.7 325 5-330 73-475 (539)
17 TIGR02478 6PF1K_euk 6-phosphof 100.0 2.4E-75 5.2E-80 623.8 31.6 317 4-346 394-736 (745)
18 PRK07085 diphosphate--fructose 100.0 7.6E-75 1.6E-79 601.2 32.8 326 4-330 75-484 (555)
19 cd00765 Pyrophosphate_PFK Phos 100.0 7.6E-75 1.6E-79 599.3 29.7 328 4-332 77-489 (550)
20 PLN02251 pyrophosphate-depende 100.0 8E-74 1.7E-78 592.9 32.6 325 6-331 103-503 (568)
21 PF00365 PFK: Phosphofructokin 100.0 8.8E-75 1.9E-79 560.5 23.6 265 4-304 5-282 (282)
22 PLN03028 pyrophosphate--fructo 100.0 2.8E-73 6.1E-78 592.8 28.6 324 5-329 85-483 (610)
23 cd00764 Eukaryotic_PFK Phospho 100.0 2.1E-72 4.6E-77 598.8 30.6 313 4-346 394-736 (762)
24 PTZ00468 phosphofructokinase f 100.0 5.8E-71 1.3E-75 601.5 30.1 322 6-330 109-503 (1328)
25 PTZ00287 6-phosphofructokinase 100.0 8.6E-69 1.9E-73 588.0 31.0 325 4-329 182-573 (1419)
26 PTZ00287 6-phosphofructokinase 100.0 4E-64 8.7E-69 551.3 27.1 319 5-328 842-1271(1419)
27 PTZ00468 phosphofructokinase f 100.0 3.6E-57 7.9E-62 493.6 27.7 320 6-329 682-1134(1328)
28 KOG2440 Pyrophosphate-dependen 100.0 1E-41 2.2E-46 353.9 17.8 327 4-364 1-359 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 1.3E-35 2.9E-40 308.4 4.0 358 5-362 126-544 (666)
30 PRK04761 ppnK inorganic polyph 94.1 0.15 3.2E-06 49.0 6.8 63 71-148 10-81 (246)
31 PRK14077 pnk inorganic polypho 93.0 0.32 7E-06 47.7 7.5 67 80-162 64-132 (287)
32 PRK04885 ppnK inorganic polyph 93.0 0.28 6.1E-06 47.5 6.9 68 69-149 17-93 (265)
33 PRK00561 ppnK inorganic polyph 92.2 0.22 4.8E-06 48.1 5.0 64 69-147 17-88 (259)
34 PRK03372 ppnK inorganic polyph 91.7 0.28 6.1E-06 48.6 5.2 69 80-163 72-143 (306)
35 PRK03501 ppnK inorganic polyph 91.2 0.62 1.3E-05 45.2 6.9 54 81-148 40-96 (264)
36 PRK02649 ppnK inorganic polyph 90.9 0.44 9.5E-06 47.2 5.7 55 80-149 68-124 (305)
37 PRK01911 ppnK inorganic polyph 90.8 0.44 9.6E-06 46.9 5.6 58 80-152 64-123 (292)
38 PF01513 NAD_kinase: ATP-NAD k 90.7 0.15 3.3E-06 49.7 2.2 64 70-148 66-131 (285)
39 PRK14075 pnk inorganic polypho 90.5 0.74 1.6E-05 44.3 6.8 52 80-149 41-94 (256)
40 PRK03378 ppnK inorganic polyph 90.2 0.6 1.3E-05 45.9 5.9 54 80-148 63-118 (292)
41 PRK04539 ppnK inorganic polyph 90.1 0.47 1E-05 46.8 5.1 55 80-149 68-124 (296)
42 PF00532 Peripla_BP_1: Peripla 90.1 4 8.6E-05 39.3 11.5 138 59-212 35-180 (279)
43 PLN02929 NADH kinase 89.1 0.7 1.5E-05 45.7 5.4 64 80-149 64-137 (301)
44 COG3199 Predicted inorganic po 88.8 0.63 1.4E-05 46.5 4.8 51 67-123 87-137 (355)
45 PLN02935 Bifunctional NADH kin 88.7 0.69 1.5E-05 48.7 5.3 54 80-148 262-317 (508)
46 PRK01231 ppnK inorganic polyph 88.7 0.71 1.5E-05 45.4 5.2 56 80-150 62-119 (295)
47 cd06321 PBP1_ABC_sugar_binding 87.1 20 0.00043 33.3 13.9 83 69-161 46-128 (271)
48 cd06278 PBP1_LacI_like_2 Ligan 86.7 25 0.00055 32.2 14.3 42 68-115 42-83 (266)
49 PRK10014 DNA-binding transcrip 85.4 25 0.00055 34.0 14.1 43 68-115 108-150 (342)
50 PRK02645 ppnK inorganic polyph 84.9 1.1 2.4E-05 44.3 4.2 56 80-149 57-115 (305)
51 PRK02155 ppnK NAD(+)/NADH kina 84.9 1.7 3.6E-05 42.8 5.4 53 80-147 63-117 (291)
52 PRK02231 ppnK inorganic polyph 83.3 1.1 2.4E-05 43.6 3.4 53 80-147 42-96 (272)
53 PRK01185 ppnK inorganic polyph 82.3 2.5 5.3E-05 41.2 5.4 53 80-150 52-106 (271)
54 PRK03708 ppnK inorganic polyph 82.3 1.1 2.3E-05 43.8 2.8 55 77-147 54-110 (277)
55 PRK11914 diacylglycerol kinase 81.8 2.4 5.2E-05 41.4 5.2 70 66-143 50-120 (306)
56 cd06317 PBP1_ABC_sugar_binding 81.6 44 0.00095 30.8 14.5 41 69-113 45-85 (275)
57 PRK14076 pnk inorganic polypho 81.3 2.5 5.4E-05 45.4 5.4 55 80-149 348-404 (569)
58 PF00465 Fe-ADH: Iron-containi 80.5 2.7 5.9E-05 42.2 5.1 58 67-124 65-136 (366)
59 PRK13054 lipid kinase; Reviewe 80.4 4.6 9.9E-05 39.4 6.6 69 61-134 37-106 (300)
60 cd08180 PDD 1,3-propanediol de 79.9 3.8 8.3E-05 40.6 5.9 51 68-118 66-118 (332)
61 PRK13055 putative lipid kinase 79.4 4.9 0.00011 40.0 6.5 80 48-134 24-107 (334)
62 cd08199 EEVS 2-epi-5-epi-valio 77.7 2.7 5.8E-05 42.4 4.1 66 67-138 71-140 (354)
63 PRK00002 aroB 3-dehydroquinate 77.7 3.6 7.9E-05 41.3 5.1 64 67-136 76-142 (358)
64 cd08195 DHQS Dehydroquinate sy 77.6 2.5 5.3E-05 42.3 3.8 50 67-119 69-121 (345)
65 PRK13337 putative lipid kinase 77.2 5.2 0.00011 39.1 5.9 56 65-124 42-98 (304)
66 TIGR01357 aroB 3-dehydroquinat 76.0 5.7 0.00012 39.6 5.9 49 68-119 66-117 (344)
67 PLN02727 NAD kinase 75.1 2.6 5.6E-05 47.4 3.4 55 80-149 743-799 (986)
68 cd08170 GlyDH Glycerol dehydro 74.8 5.2 0.00011 40.0 5.2 48 67-119 64-111 (351)
69 cd08173 Gro1PDH Sn-glycerol-1- 74.6 6.2 0.00013 39.3 5.7 53 67-124 65-117 (339)
70 cd08551 Fe-ADH iron-containing 74.5 5.3 0.00011 40.2 5.3 56 67-122 67-135 (370)
71 cd08177 MAR Maleylacetate redu 74.4 6.2 0.00013 39.3 5.7 48 68-120 65-112 (337)
72 cd08196 DHQS-like1 Dehydroquin 74.0 4.2 9E-05 41.0 4.3 65 68-138 61-128 (346)
73 cd08189 Fe-ADH5 Iron-containin 74.0 7.1 0.00015 39.4 6.1 52 68-119 71-136 (374)
74 cd08197 DOIS 2-deoxy-scyllo-in 72.7 6.2 0.00013 39.8 5.2 60 68-133 69-131 (355)
75 cd06320 PBP1_allose_binding Pe 72.7 67 0.0015 29.7 12.1 47 69-119 46-92 (275)
76 cd08186 Fe-ADH8 Iron-containin 72.6 8 0.00017 39.2 6.1 35 68-102 72-106 (383)
77 TIGR00147 lipid kinase, YegS/R 72.4 4.4 9.6E-05 39.1 4.0 52 68-124 45-98 (293)
78 cd08172 GlyDH-like1 Glycerol d 72.3 5.2 0.00011 40.0 4.6 51 67-122 63-113 (347)
79 cd08178 AAD_C C-terminal alcoh 72.3 8.2 0.00018 39.4 6.1 33 68-100 66-98 (398)
80 PRK10703 DNA-binding transcrip 71.5 84 0.0018 30.4 12.8 25 69-93 104-128 (341)
81 PRK13951 bifunctional shikimat 71.5 4.2 9E-05 42.9 3.8 108 24-138 172-289 (488)
82 cd01537 PBP1_Repressors_Sugar_ 71.4 77 0.0017 28.4 16.3 84 68-162 43-126 (264)
83 cd06283 PBP1_RegR_EndR_KdgR_li 71.2 83 0.0018 28.7 13.3 78 69-160 44-122 (267)
84 PRK00861 putative lipid kinase 70.7 8.2 0.00018 37.6 5.5 68 66-141 43-110 (300)
85 cd06298 PBP1_CcpA_like Ligand- 70.6 86 0.0019 28.7 13.5 77 69-161 44-123 (268)
86 PRK09860 putative alcohol dehy 70.5 8.3 0.00018 39.2 5.6 34 68-101 76-109 (383)
87 PLN02834 3-dehydroquinate synt 70.5 4.8 0.00011 41.8 4.0 63 68-136 148-213 (433)
88 cd08179 NADPH_BDH NADPH-depend 70.3 9.8 0.00021 38.4 6.1 34 68-101 69-102 (375)
89 cd08194 Fe-ADH6 Iron-containin 70.1 9.5 0.00021 38.6 5.9 51 68-118 68-131 (375)
90 PRK15454 ethanol dehydrogenase 69.9 9.1 0.0002 39.1 5.8 34 68-101 94-127 (395)
91 cd07766 DHQ_Fe-ADH Dehydroquin 69.9 7.2 0.00016 38.4 4.9 52 68-122 66-117 (332)
92 cd08193 HVD 5-hydroxyvalerate 69.6 9.9 0.00021 38.4 5.9 52 68-119 71-135 (376)
93 PRK10423 transcriptional repre 69.4 92 0.002 29.8 12.5 25 69-93 101-125 (327)
94 cd01538 PBP1_ABC_xylose_bindin 69.2 1E+02 0.0022 29.0 14.4 44 68-115 43-86 (288)
95 TIGR02638 lactal_redase lactal 69.1 10 0.00022 38.5 5.9 51 68-118 74-139 (379)
96 PRK00843 egsA NAD(P)-dependent 69.1 11 0.00024 37.7 6.2 60 67-136 74-133 (350)
97 PRK12361 hypothetical protein; 68.7 8.1 0.00018 41.1 5.3 53 67-124 284-336 (547)
98 PLN02958 diacylglycerol kinase 68.5 11 0.00024 39.7 6.1 99 24-125 112-215 (481)
99 PRK15138 aldehyde reductase; P 68.3 8.8 0.00019 39.1 5.3 34 68-101 73-106 (387)
100 cd08181 PPD-like 1,3-propanedi 68.1 9.9 0.00022 38.2 5.5 52 68-119 71-134 (357)
101 cd08185 Fe-ADH1 Iron-containin 67.8 9.1 0.0002 38.7 5.2 34 68-101 71-104 (380)
102 TIGR03702 lip_kinase_YegS lipi 67.2 13 0.00027 36.2 6.0 61 62-124 34-95 (293)
103 cd08182 HEPD Hydroxyethylphosp 66.8 12 0.00025 37.7 5.8 51 68-118 65-132 (367)
104 cd08176 LPO Lactadehyde:propan 66.7 12 0.00026 37.8 5.9 34 68-101 73-106 (377)
105 PRK13057 putative lipid kinase 66.2 9.1 0.0002 37.0 4.7 52 67-124 38-89 (287)
106 PRK09423 gldA glycerol dehydro 65.9 12 0.00025 37.8 5.5 46 68-118 72-117 (366)
107 cd08184 Fe-ADH3 Iron-containin 65.6 11 0.00025 37.8 5.4 35 68-102 66-103 (347)
108 cd08550 GlyDH-like Glycerol_de 65.5 11 0.00024 37.6 5.3 52 67-123 64-115 (349)
109 TIGR00288 conserved hypothetic 65.4 16 0.00035 32.9 5.7 50 66-118 88-140 (160)
110 PRK13059 putative lipid kinase 65.2 13 0.00027 36.3 5.5 68 68-142 45-112 (295)
111 cd08198 DHQS-like2 Dehydroquin 65.0 11 0.00023 38.5 5.0 65 69-139 85-152 (369)
112 COG0061 nadF NAD kinase [Coenz 64.8 6.3 0.00014 38.4 3.3 44 79-137 54-97 (281)
113 PRK10624 L-1,2-propanediol oxi 63.9 13 0.00028 37.7 5.5 51 68-118 75-140 (382)
114 cd06273 PBP1_GntR_like_1 This 63.3 86 0.0019 28.7 10.6 41 69-115 44-84 (268)
115 cd06299 PBP1_LacI_like_13 Liga 63.2 1.2E+02 0.0026 27.7 13.5 78 69-160 44-122 (265)
116 TIGR01481 ccpA catabolite cont 63.0 1.4E+02 0.0031 28.5 13.8 41 69-115 104-144 (329)
117 cd08183 Fe-ADH2 Iron-containin 62.4 15 0.00032 37.1 5.6 35 67-101 62-96 (374)
118 COG1597 LCB5 Sphingosine kinas 61.7 26 0.00057 34.5 7.0 108 25-144 4-116 (301)
119 COG0041 PurE Phosphoribosylcar 61.2 21 0.00045 32.0 5.5 25 59-83 8-32 (162)
120 cd08187 BDH Butanol dehydrogen 60.8 15 0.00032 37.2 5.2 54 68-121 74-140 (382)
121 cd06304 PBP1_BmpA_like Peripla 60.1 1.4E+02 0.0031 27.5 14.7 24 67-90 43-66 (260)
122 cd08192 Fe-ADH7 Iron-containin 59.7 20 0.00044 36.0 6.0 35 68-102 69-103 (370)
123 cd08171 GlyDH-like2 Glycerol d 59.3 17 0.00037 36.2 5.4 47 68-119 66-112 (345)
124 PRK10586 putative oxidoreducta 58.9 12 0.00025 38.0 4.1 61 67-133 74-134 (362)
125 PRK06203 aroB 3-dehydroquinate 58.7 17 0.00037 37.1 5.3 64 69-138 97-163 (389)
126 cd08191 HHD 6-hydroxyhexanoate 58.4 20 0.00043 36.4 5.7 52 68-119 67-131 (386)
127 PF02401 LYTB: LytB protein; 58.3 13 0.00029 36.4 4.2 51 68-120 198-248 (281)
128 cd06292 PBP1_LacI_like_10 Liga 58.2 1.5E+02 0.0033 27.2 13.8 47 67-115 42-89 (273)
129 cd08175 G1PDH Glycerol-1-phosp 58.0 15 0.00033 36.6 4.8 45 68-118 69-113 (348)
130 COG1454 EutG Alcohol dehydroge 58.0 21 0.00046 36.4 5.8 33 68-100 74-106 (377)
131 cd01575 PBP1_GntR Ligand-bindi 57.9 1.5E+02 0.0032 27.0 16.6 42 68-115 43-84 (268)
132 TIGR03405 Phn_Fe-ADH phosphona 57.9 23 0.00051 35.5 6.1 34 68-101 66-101 (355)
133 PRK14987 gluconate operon tran 57.8 1.8E+02 0.0039 27.9 14.7 77 69-160 108-186 (331)
134 cd08188 Fe-ADH4 Iron-containin 57.3 24 0.00052 35.7 6.1 52 68-119 73-137 (377)
135 PF00289 CPSase_L_chain: Carba 57.1 16 0.00035 30.5 4.0 45 67-115 61-105 (110)
136 cd08169 DHQ-like Dehydroquinat 56.9 17 0.00037 36.4 4.9 64 68-137 68-134 (344)
137 PRK01045 ispH 4-hydroxy-3-meth 55.7 30 0.00064 34.3 6.2 78 68-147 199-280 (298)
138 COG0371 GldA Glycerol dehydrog 55.2 18 0.0004 36.7 4.7 54 67-125 71-124 (360)
139 cd08549 G1PDH_related Glycerol 55.2 28 0.00061 34.6 6.1 49 68-122 69-117 (332)
140 PF02844 GARS_N: Phosphoribosy 54.4 12 0.00027 30.9 2.8 46 66-116 48-93 (100)
141 PLN02821 1-hydroxy-2-methyl-2- 54.2 19 0.00042 37.6 4.8 52 68-120 350-401 (460)
142 PRK14021 bifunctional shikimat 54.1 13 0.00027 39.8 3.6 64 69-138 255-321 (542)
143 PRK15458 tagatose 6-phosphate 54.1 1.3E+02 0.0029 31.2 10.7 110 41-160 45-172 (426)
144 cd06274 PBP1_FruR Ligand bindi 54.0 1.8E+02 0.0038 26.7 13.6 42 68-115 43-84 (264)
145 cd08174 G1PDH-like Glycerol-1- 53.9 31 0.00067 34.1 6.1 54 67-125 61-115 (331)
146 cd08190 HOT Hydroxyacid-oxoaci 53.8 29 0.00062 35.7 6.0 33 68-100 68-100 (414)
147 PRK10401 DNA-binding transcrip 53.6 2.2E+02 0.0047 27.6 12.0 22 69-90 104-125 (346)
148 cd06167 LabA_like LabA_like pr 51.8 32 0.00069 29.4 5.2 43 71-116 90-132 (149)
149 cd06310 PBP1_ABC_sugar_binding 51.7 1.9E+02 0.0042 26.5 14.8 84 68-161 45-130 (273)
150 cd06307 PBP1_uncharacterized_s 51.7 2E+02 0.0043 26.6 13.3 47 69-124 48-94 (275)
151 cd01545 PBP1_SalR Ligand-bindi 51.6 1.9E+02 0.0042 26.3 13.8 80 69-160 45-124 (270)
152 PF04208 MtrA: Tetrahydrometha 50.7 35 0.00075 31.1 5.2 56 52-108 37-95 (176)
153 TIGR02810 agaZ_gatZ D-tagatose 49.5 1.8E+02 0.0039 30.2 10.7 110 41-160 41-168 (420)
154 KOG4180 Predicted kinase [Gene 48.8 15 0.00032 36.8 2.8 68 42-115 45-135 (395)
155 cd06295 PBP1_CelR Ligand bindi 48.3 1.6E+02 0.0035 27.2 9.8 44 68-117 52-95 (275)
156 PF07905 PucR: Purine cataboli 47.8 60 0.0013 27.3 6.1 71 45-117 32-107 (123)
157 smart00046 DAGKc Diacylglycero 47.2 24 0.00052 29.7 3.6 42 80-124 49-93 (124)
158 cd06314 PBP1_tmGBP Periplasmic 47.2 2.3E+02 0.0051 26.1 16.5 69 68-146 43-113 (271)
159 cd06313 PBP1_ABC_sugar_binding 47.1 2.4E+02 0.0052 26.2 12.4 125 69-210 44-181 (272)
160 cd06302 PBP1_LsrB_Quorum_Sensi 46.9 1.9E+02 0.0042 27.4 10.4 44 68-115 44-87 (298)
161 PF04405 ScdA_N: Domain of Unk 46.8 21 0.00045 26.4 2.7 27 69-97 12-38 (56)
162 cd06297 PBP1_LacI_like_12 Liga 46.7 1.8E+02 0.0039 26.9 9.9 48 62-115 36-84 (269)
163 PRK06186 hypothetical protein; 46.3 46 0.00099 31.7 5.7 58 80-153 53-112 (229)
164 PF00781 DAGK_cat: Diacylglyce 46.3 11 0.00024 31.8 1.4 65 68-138 41-108 (130)
165 PF01936 NYN: NYN domain; Int 45.9 23 0.0005 29.8 3.3 48 71-121 86-133 (146)
166 PRK15052 D-tagatose-1,6-bispho 45.5 2.2E+02 0.0049 29.5 10.7 110 41-160 42-168 (421)
167 PF05036 SPOR: Sporulation rel 45.2 30 0.00065 25.6 3.5 50 60-109 9-71 (76)
168 COG4981 Enoyl reductase domain 45.0 2.2E+02 0.0048 30.8 10.7 95 69-186 110-217 (717)
169 PRK05670 anthranilate synthase 44.0 40 0.00086 30.5 4.8 50 76-138 39-88 (189)
170 PRK13371 4-hydroxy-3-methylbut 43.8 58 0.0013 33.4 6.3 54 67-121 275-328 (387)
171 cd06296 PBP1_CatR_like Ligand- 43.8 2.6E+02 0.0055 25.6 15.6 42 68-115 43-84 (270)
172 COG1122 CbiO ABC-type cobalt t 43.7 78 0.0017 30.1 6.8 98 117-218 95-196 (235)
173 cd01539 PBP1_GGBP Periplasmic 43.3 3E+02 0.0065 26.2 14.4 43 69-115 46-88 (303)
174 cd01391 Periplasmic_Binding_Pr 43.1 2.3E+02 0.005 24.9 13.1 83 68-161 46-131 (269)
175 PF04263 TPK_catalytic: Thiami 43.0 92 0.002 26.5 6.5 68 24-92 17-96 (123)
176 cd06271 PBP1_AglR_RafR_like Li 42.6 2.6E+02 0.0057 25.3 14.4 40 70-115 49-88 (268)
177 PRK12360 4-hydroxy-3-methylbut 42.2 27 0.00058 34.3 3.5 53 68-122 198-250 (281)
178 PF10087 DUF2325: Uncharacteri 41.9 79 0.0017 25.3 5.8 86 84-178 2-95 (97)
179 PRK13805 bifunctional acetalde 41.1 52 0.0011 37.2 6.0 33 68-100 527-559 (862)
180 TIGR02417 fruct_sucro_rep D-fr 40.6 3.3E+02 0.0072 25.9 14.4 23 69-91 105-127 (327)
181 cd06290 PBP1_LacI_like_9 Ligan 40.2 2.9E+02 0.0063 25.1 13.1 25 69-93 44-68 (265)
182 TIGR01162 purE phosphoribosyla 39.6 49 0.0011 29.7 4.4 51 62-119 35-86 (156)
183 smart00481 POLIIIAc DNA polyme 39.5 91 0.002 22.9 5.4 50 68-119 16-65 (67)
184 PRK11629 lolD lipoprotein tran 39.2 55 0.0012 30.3 5.0 51 169-220 153-205 (233)
185 PRK10247 putative ABC transpor 38.6 59 0.0013 30.0 5.1 61 159-220 135-197 (225)
186 cd06285 PBP1_LacI_like_7 Ligan 38.2 3.1E+02 0.0068 25.0 14.0 41 69-115 44-84 (265)
187 PRK10727 DNA-binding transcrip 37.9 3.8E+02 0.0082 25.8 12.1 23 69-91 104-126 (343)
188 TIGR00216 ispH_lytB (E)-4-hydr 37.7 94 0.002 30.5 6.5 52 67-120 196-247 (280)
189 cd01574 PBP1_LacI Ligand-bindi 37.7 3.1E+02 0.0068 24.8 14.5 77 68-160 44-122 (264)
190 PF01761 DHQ_synthase: 3-dehyd 37.7 9.3 0.0002 37.0 -0.5 65 68-138 14-81 (260)
191 cd06305 PBP1_methylthioribose_ 37.6 3.2E+02 0.007 24.9 14.6 83 69-161 44-127 (273)
192 PRK05637 anthranilate synthase 37.2 77 0.0017 29.4 5.6 52 74-138 38-89 (208)
193 PRK10771 thiQ thiamine transpo 37.1 63 0.0014 29.8 5.1 61 159-220 127-189 (232)
194 PRK15408 autoinducer 2-binding 36.3 4.3E+02 0.0094 26.0 14.0 132 70-210 70-207 (336)
195 COG1609 PurR Transcriptional r 35.3 56 0.0012 32.3 4.7 133 58-210 91-234 (333)
196 cd03238 ABC_UvrA The excision 34.6 66 0.0014 29.0 4.6 59 160-220 86-148 (176)
197 TIGR00566 trpG_papA glutamine 33.5 68 0.0015 29.0 4.6 49 74-138 37-88 (188)
198 cd06293 PBP1_LacI_like_11 Liga 33.2 3.8E+02 0.0083 24.5 14.9 77 69-161 44-123 (269)
199 CHL00101 trpG anthranilate syn 33.1 61 0.0013 29.4 4.2 21 75-95 38-58 (190)
200 TIGR02673 FtsE cell division A 33.1 78 0.0017 28.7 4.9 59 160-220 136-196 (214)
201 PF00710 Asparaginase: Asparag 32.7 2.9E+02 0.0064 27.2 9.2 74 67-148 57-132 (313)
202 PRK10584 putative ABC transpor 32.5 77 0.0017 29.1 4.8 58 161-219 146-205 (228)
203 COG0761 lytB 4-Hydroxy-3-methy 32.5 65 0.0014 31.7 4.4 78 68-147 201-282 (294)
204 cd02991 UAS_ETEA UAS family, E 32.3 96 0.0021 26.0 4.9 66 70-141 43-108 (116)
205 cd04234 AAK_AK AAK_AK: Amino A 32.2 4.2E+02 0.009 24.6 10.0 37 53-92 4-42 (227)
206 PRK02261 methylaspartate mutas 32.2 2.2E+02 0.0048 24.6 7.3 22 69-90 71-93 (137)
207 PF13685 Fe-ADH_2: Iron-contai 32.1 37 0.00081 32.6 2.7 52 68-124 63-114 (250)
208 TIGR01916 F420_cofE F420-0:gam 31.3 1.1E+02 0.0024 29.4 5.7 55 155-218 89-148 (243)
209 TIGR00725 conserved hypothetic 31.3 1.2E+02 0.0025 27.0 5.5 51 58-115 5-60 (159)
210 TIGR02769 nickel_nikE nickel i 31.1 81 0.0018 29.9 4.9 61 160-221 149-211 (265)
211 cd03216 ABC_Carb_Monos_I This 30.4 93 0.002 27.2 4.8 61 158-220 79-141 (163)
212 cd02071 MM_CoA_mut_B12_BD meth 30.4 1.9E+02 0.0041 24.1 6.5 23 69-91 67-90 (122)
213 PF07131 DUF1382: Protein of u 30.4 1.6E+02 0.0035 22.1 5.1 45 94-153 14-58 (61)
214 cd06289 PBP1_MalI_like Ligand- 30.1 4.2E+02 0.009 24.0 14.6 42 69-115 44-85 (268)
215 TIGR00640 acid_CoA_mut_C methy 30.1 3.1E+02 0.0066 23.6 7.8 102 40-145 13-125 (132)
216 PF13727 CoA_binding_3: CoA-bi 29.9 95 0.0021 26.6 4.7 47 68-116 129-175 (175)
217 cd06318 PBP1_ABC_sugar_binding 29.6 4.5E+02 0.0097 24.1 16.0 43 69-115 44-86 (282)
218 PLN02204 diacylglycerol kinase 29.5 68 0.0015 34.8 4.3 50 46-96 179-234 (601)
219 cd02072 Glm_B12_BD B12 binding 29.5 1.4E+02 0.003 25.8 5.5 49 67-118 65-117 (128)
220 cd03235 ABC_Metallic_Cations A 29.4 94 0.002 28.2 4.8 60 159-220 130-191 (213)
221 cd06323 PBP1_ribose_binding Pe 29.3 4.3E+02 0.0093 23.9 14.1 43 69-115 44-86 (268)
222 cd01542 PBP1_TreR_like Ligand- 29.2 1.5E+02 0.0033 26.9 6.2 41 69-115 44-84 (259)
223 cd02038 FleN-like FleN is a me 29.2 3.5E+02 0.0076 22.8 8.2 69 87-190 8-76 (139)
224 PRK06774 para-aminobenzoate sy 29.1 65 0.0014 29.1 3.6 22 74-95 37-58 (191)
225 PRK05096 guanosine 5'-monophos 28.6 3.5E+02 0.0076 27.4 8.9 103 70-188 139-243 (346)
226 PRK10253 iron-enterobactin tra 28.6 93 0.002 29.5 4.8 61 159-220 141-203 (265)
227 PRK11303 DNA-binding transcrip 28.2 5.2E+02 0.011 24.5 14.2 23 69-91 106-128 (328)
228 PF04122 CW_binding_2: Putativ 28.0 89 0.0019 24.6 3.8 40 54-95 48-87 (92)
229 COG0504 PyrG CTP synthase (UTP 27.8 1.7E+02 0.0036 31.2 6.6 62 75-153 339-402 (533)
230 PRK13111 trpA tryptophan synth 27.6 1.7E+02 0.0036 28.2 6.3 49 68-118 105-153 (258)
231 cd03255 ABC_MJ0796_Lo1CDE_FtsE 27.5 1.5E+02 0.0033 26.8 5.9 59 161-220 140-200 (218)
232 KOG4435 Predicted lipid kinase 27.5 99 0.0021 32.1 4.8 50 69-121 106-155 (535)
233 PF00731 AIRC: AIR carboxylase 27.5 55 0.0012 29.1 2.7 48 64-118 39-87 (150)
234 PRK00087 4-hydroxy-3-methylbut 27.4 65 0.0014 35.2 3.9 54 67-122 194-247 (647)
235 PRK09492 treR trehalose repres 27.3 5.3E+02 0.012 24.3 12.6 21 69-89 107-127 (315)
236 PRK11247 ssuB aliphatic sulfon 27.3 1E+02 0.0023 29.3 4.9 59 161-220 133-193 (257)
237 TIGR01303 IMP_DH_rel_1 IMP deh 27.3 3.6E+02 0.0078 28.4 9.2 102 69-187 253-357 (475)
238 PF09288 UBA_3: Fungal ubiquit 27.2 94 0.002 23.0 3.4 45 44-103 8-53 (55)
239 PLN02335 anthranilate synthase 27.0 94 0.002 29.1 4.4 46 76-134 58-103 (222)
240 cd03293 ABC_NrtD_SsuB_transpor 26.9 1.7E+02 0.0036 26.7 6.0 60 160-220 130-191 (220)
241 TIGR03864 PQQ_ABC_ATP ABC tran 26.6 1.6E+02 0.0035 27.1 6.0 58 161-219 132-191 (236)
242 PF13407 Peripla_BP_4: Peripla 26.5 4.9E+02 0.011 23.6 10.0 129 69-211 44-182 (257)
243 cd03230 ABC_DR_subfamily_A Thi 26.4 1.5E+02 0.0033 26.0 5.5 50 168-219 102-153 (173)
244 TIGR00262 trpA tryptophan synt 26.4 1E+02 0.0022 29.6 4.6 50 68-119 103-152 (256)
245 cd03221 ABCF_EF-3 ABCF_EF-3 E 26.1 1.8E+02 0.004 24.8 5.8 55 162-219 71-125 (144)
246 cd03231 ABC_CcmA_heme_exporter 25.8 1.2E+02 0.0027 27.3 4.9 60 160-221 124-185 (201)
247 PTZ00314 inosine-5'-monophosph 25.8 4.3E+02 0.0093 28.0 9.5 96 72-187 272-373 (495)
248 TIGR01277 thiQ thiamine ABC tr 25.8 1.7E+02 0.0038 26.5 5.9 59 161-220 128-188 (213)
249 TIGR02315 ABC_phnC phosphonate 25.5 1.3E+02 0.0027 27.9 5.0 60 160-220 144-205 (243)
250 PRK15395 methyl-galactoside AB 25.5 6.3E+02 0.014 24.5 11.8 43 70-116 71-113 (330)
251 cd03237 ABC_RNaseL_inhibitor_d 25.5 1.5E+02 0.0033 28.0 5.6 58 162-220 116-175 (246)
252 cd03267 ABC_NatA_like Similar 25.4 1.6E+02 0.0035 27.3 5.7 59 161-220 153-213 (236)
253 cd01744 GATase1_CPSase Small c 25.3 1.6E+02 0.0034 26.3 5.4 49 76-139 35-86 (178)
254 cd03297 ABC_ModC_molybdenum_tr 25.1 1.7E+02 0.0037 26.5 5.7 59 160-219 130-190 (214)
255 TIGR01918 various_sel_PB selen 25.0 1.8E+02 0.0039 30.3 6.2 43 67-109 323-366 (431)
256 cd03295 ABC_OpuCA_Osmoprotecti 25.0 1.3E+02 0.0028 27.9 5.0 59 161-220 135-195 (242)
257 cd03301 ABC_MalK_N The N-termi 24.8 1.7E+02 0.0038 26.3 5.7 61 159-220 128-190 (213)
258 cd03259 ABC_Carb_Solutes_like 24.7 1.8E+02 0.0038 26.3 5.7 59 161-220 130-190 (213)
259 cd03261 ABC_Org_Solvent_Resist 24.3 1.4E+02 0.003 27.5 5.0 59 161-220 136-196 (235)
260 TIGR02405 trehalos_R_Ecol treh 24.1 6.2E+02 0.013 24.0 14.4 22 69-90 104-125 (311)
261 cd00537 MTHFR Methylenetetrahy 24.0 1.2E+02 0.0025 29.1 4.6 59 47-105 48-123 (274)
262 TIGR01917 gly_red_sel_B glycin 23.9 2E+02 0.0042 30.1 6.2 43 68-110 324-367 (431)
263 TIGR02323 CP_lyasePhnK phospho 23.9 1.8E+02 0.0038 27.2 5.7 59 161-220 148-208 (253)
264 cd03258 ABC_MetN_methionine_tr 23.8 2E+02 0.0043 26.4 5.9 60 160-220 139-200 (233)
265 TIGR01501 MthylAspMutase methy 23.7 4.5E+02 0.0097 22.8 7.7 44 49-92 45-93 (134)
266 PRK02399 hypothetical protein; 23.5 1.2E+02 0.0026 31.3 4.7 69 43-119 49-126 (406)
267 cd03240 ABC_Rad50 The catalyti 23.3 1.8E+02 0.004 26.5 5.5 48 170-219 130-181 (204)
268 cd06294 PBP1_ycjW_transcriptio 23.2 5.6E+02 0.012 23.2 14.8 79 69-161 49-129 (270)
269 cd03257 ABC_NikE_OppD_transpor 23.1 2.1E+02 0.0046 26.0 6.0 59 161-220 145-205 (228)
270 TIGR01184 ntrCD nitrate transp 23.1 2.1E+02 0.0046 26.4 6.0 60 160-220 113-174 (230)
271 TIGR01769 GGGP geranylgeranylg 23.1 2.7E+02 0.0058 26.0 6.6 58 68-127 12-71 (205)
272 cd03256 ABC_PhnC_transporter A 23.1 1.9E+02 0.0042 26.6 5.8 60 160-220 143-204 (241)
273 cd02067 B12-binding B12 bindin 23.0 1.7E+02 0.0037 23.9 4.9 37 70-106 40-77 (119)
274 cd06337 PBP1_ABC_ligand_bindin 22.9 2.2E+02 0.0048 27.9 6.5 60 53-115 173-235 (357)
275 TIGR02211 LolD_lipo_ex lipopro 22.9 2.1E+02 0.0045 26.0 5.8 58 161-219 141-200 (221)
276 cd06322 PBP1_ABC_sugar_binding 22.8 5.6E+02 0.012 23.3 8.8 44 69-116 44-87 (267)
277 cd03296 ABC_CysA_sulfate_impor 22.8 1.9E+02 0.0042 26.7 5.7 59 161-220 136-196 (239)
278 cd03265 ABC_DrrA DrrA is the A 22.8 2.1E+02 0.0045 26.1 5.8 61 159-220 129-191 (220)
279 cd03292 ABC_FtsE_transporter F 22.7 1.5E+02 0.0033 26.7 4.9 58 161-220 136-195 (214)
280 PF00582 Usp: Universal stress 22.7 2.3E+02 0.0051 22.3 5.6 22 69-91 91-112 (140)
281 PF09651 Cas_APE2256: CRISPR-a 22.7 2.4E+02 0.0053 24.3 5.9 98 83-189 24-126 (136)
282 PRK10908 cell division protein 22.7 1.5E+02 0.0032 27.1 4.8 57 161-219 137-195 (222)
283 PRK13293 F420-0--gamma-glutamy 22.6 1.3E+02 0.0028 29.0 4.5 56 155-219 90-150 (245)
284 PF00571 CBS: CBS domain CBS d 22.6 1.2E+02 0.0026 20.9 3.3 29 67-95 16-44 (57)
285 PRK14812 hypothetical protein; 22.1 1.4E+02 0.0031 25.5 4.1 38 60-108 2-39 (119)
286 TIGR00676 fadh2 5,10-methylene 22.0 1.5E+02 0.0032 28.6 4.8 24 69-92 75-98 (272)
287 PF11823 DUF3343: Protein of u 21.9 1.2E+02 0.0026 23.0 3.4 41 91-134 9-49 (73)
288 cd03298 ABC_ThiQ_thiamine_tran 21.9 2.3E+02 0.0049 25.6 5.9 60 160-220 127-188 (211)
289 TIGR01187 potA spermidine/putr 21.8 1.4E+02 0.003 29.5 4.7 62 159-221 98-161 (325)
290 KOG2749 mRNA cleavage and poly 21.8 1.8E+02 0.004 29.8 5.5 61 54-118 211-273 (415)
291 cd06281 PBP1_LacI_like_5 Ligan 21.8 3.9E+02 0.0084 24.5 7.5 47 69-120 44-90 (269)
292 cd08173 Gro1PDH Sn-glycerol-1- 21.6 2.3E+02 0.0049 28.1 6.2 40 69-109 41-80 (339)
293 cd06335 PBP1_ABC_ligand_bindin 21.3 2.4E+02 0.0053 27.4 6.3 59 53-114 163-224 (347)
294 TIGR01978 sufC FeS assembly AT 21.3 1.7E+02 0.0038 26.9 5.0 51 168-220 151-203 (243)
295 PRK13600 putative ribosomal pr 21.3 3.9E+02 0.0085 21.3 6.3 47 68-117 17-63 (84)
296 cd06329 PBP1_SBP_like_3 Peripl 21.2 2.9E+02 0.0063 26.7 6.9 57 55-114 172-232 (342)
297 PRK13640 cbiO cobalt transport 21.2 1.9E+02 0.0042 27.7 5.5 59 161-220 143-203 (282)
298 PLN02591 tryptophan synthase 21.1 2.5E+02 0.0054 27.0 6.1 48 68-118 94-142 (250)
299 PRK14053 methyltransferase; Pr 21.0 1.6E+02 0.0035 27.2 4.5 52 56-108 38-92 (194)
300 PRK11831 putative ABC transpor 21.0 2.3E+02 0.005 26.9 5.9 60 160-220 142-203 (269)
301 cd03214 ABC_Iron-Siderophores_ 20.9 2.5E+02 0.0054 24.7 5.8 59 160-220 96-157 (180)
302 PF06789 UPF0258: Uncharacteri 20.8 47 0.001 29.6 1.0 20 121-140 102-124 (159)
303 TIGR01378 thi_PPkinase thiamin 20.8 4.7E+02 0.01 24.0 7.7 68 25-92 20-98 (203)
304 PF02633 Creatininase: Creatin 20.7 2.7E+02 0.0059 26.0 6.3 45 69-113 88-133 (237)
305 TIGR00176 mobB molybdopterin-g 20.7 4E+02 0.0088 23.2 7.0 47 84-136 2-51 (155)
306 KOG3833 Uncharacterized conser 20.6 83 0.0018 31.7 2.7 87 5-92 57-160 (505)
307 cd06346 PBP1_ABC_ligand_bindin 20.6 2.8E+02 0.0061 26.4 6.5 60 52-114 161-223 (312)
308 TIGR03005 ectoine_ehuA ectoine 20.5 2.3E+02 0.0051 26.4 5.8 59 161-220 146-206 (252)
309 TIGR02826 RNR_activ_nrdG3 anae 20.5 2.5E+02 0.0054 24.6 5.6 42 68-110 47-91 (147)
310 PF07085 DRTGG: DRTGG domain; 20.4 1.7E+02 0.0037 23.6 4.2 45 68-117 49-93 (105)
311 TIGR03652 FeS_repair_RIC iron- 20.2 75 0.0016 29.6 2.3 26 70-97 9-34 (216)
312 cd03225 ABC_cobalt_CbiO_domain 20.1 1.9E+02 0.004 26.1 4.9 58 160-219 133-192 (211)
313 PRK13541 cytochrome c biogenes 20.1 1.8E+02 0.0039 26.0 4.7 59 160-220 122-182 (195)
314 cd03250 ABCC_MRP_domain1 Domai 20.1 2.1E+02 0.0046 25.7 5.2 58 162-220 128-187 (204)
No 1
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=3.1e-97 Score=753.31 Aligned_cols=361 Identities=77% Similarity=1.228 Sum_probs=334.6
Q ss_pred ecccCCCCCcHHHHHhhhc-------C-CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCCCchHHHHHH
Q 016855 4 ISSVICFCYSLPLFVKHLH-------H-NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDN 75 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~-------~-~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~~~~~~i~~~ 75 (381)
|-..|++|||||+||+++. + ++||||++||+||+++++++|+++.+++|+++|||+|||||++++.++++++
T Consensus 92 IlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTsR~~~~~~~iv~~ 171 (484)
T PLN02564 92 IVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDS 171 (484)
T ss_pred EECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCceeccCCCcchHHHHHHH
Confidence 5568999999999987543 2 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhcCc
Q 016855 76 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVEN 155 (381)
Q Consensus 76 l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~~~ 155 (381)
|++++||+||+|||||||++|++|+++++++|++|+||||||||||||++||+|||||||+++++++|++++.||.||++
T Consensus 172 L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~~~~~aI~~i~~tA~S~~~ 251 (484)
T PLN02564 172 IQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESVEN 251 (484)
T ss_pred HHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCceEEEEecCCCchhhhccCCcccc
Q 016855 156 GVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDE 235 (381)
Q Consensus 156 rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~~~~iIvVsEG~~~~~~~~~~~~~~~ 235 (381)
||||||+|||+|||||+++|||+++||+|||||.||+++++.++++.|++|+++++|+|||||||+.+.++.+..+....
T Consensus 252 rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VIVVAEGagq~~~~~~~~~~~~ 331 (484)
T PLN02564 252 GIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVVAEGAGQDLIAESMESSDL 331 (484)
T ss_pred CEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEEEEeCCCccchhhhhhccccc
Confidence 89999999999999999999999559999999999999977789999999999899999999999976555444333345
Q ss_pred ccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeC
Q 016855 236 KDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVN 315 (381)
Q Consensus 236 ~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~~~~ 315 (381)
+|++||+++++++.+|+++|+++++.+....+.+|+++|||+|||++|+++||+||++||..||+++++|++|+||++++
T Consensus 332 ~Da~Gn~~l~dig~~La~~I~~~~~~~~~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG~tg~mVg~~~ 411 (484)
T PLN02564 332 QDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVN 411 (484)
T ss_pred ccccCCcccCcHHHHHHHHHHHHhhhcccCCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 89999999999999999999998854434456799999999999999999999999999999999999999999999999
Q ss_pred CccccccHHHHHhhCCCCCCChHHHHHHHHhcCCCCCCChHHHhHHhhh
Q 016855 316 SRHAYIPIARVTETQKTVKLTDRMWARLLASTNQPSFLNCSEVLHHQEK 364 (381)
Q Consensus 316 ~~~~~vpl~~~~~~~k~v~~~~~~~~~~l~~~~~~~F~~~~~~~~~~~~ 364 (381)
++++++||++++...|+|++++.+|.++|..|+||+|.++.+.....++
T Consensus 412 ~~~~~vPi~~~~~~~~~v~~~~~~w~~~l~~t~qp~f~~~~~~~~~~~~ 460 (484)
T PLN02564 412 GRHAYIPFYRITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAKRE 460 (484)
T ss_pred CEEEEEEHHHHhccCCccCCChHHHHHHHHHcCCCCccCchhhhhhhhh
Confidence 9999999999999999999999999999999999999998877554433
No 2
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=1.9e-94 Score=733.87 Aligned_cols=355 Identities=51% Similarity=0.837 Sum_probs=329.9
Q ss_pred ecccCCCCCcHHHHHhhhcC--------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCCCchHHHHHH
Q 016855 4 ISSVICFCYSLPLFVKHLHH--------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDN 75 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~--------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~~~~~~i~~~ 75 (381)
|-..|++|||||+||+++.. .+|||+++||+||+++++++|+++.+++|+++|||+|||||++++.++++++
T Consensus 92 IvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTSR~~~~~~~iv~~ 171 (459)
T PTZ00286 92 IVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGFDPKVMVDT 171 (459)
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCceeccCCChhhHHHHHHH
Confidence 55789999999999885433 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhcCc
Q 016855 76 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVEN 155 (381)
Q Consensus 76 l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~~~ 155 (381)
|++++||+||+|||||||++|++|+++++++|++|+||||||||||||++||+|||||||+++++++|++++.||.||++
T Consensus 172 L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~~~~aI~~~~~eA~S~~~ 251 (459)
T PTZ00286 172 LIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAYVEAKSAKN 251 (459)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCceEEEEecCCCchhhhccCCcccc
Q 016855 156 GVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDE 235 (381)
Q Consensus 156 rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~~~~iIvVsEG~~~~~~~~~~~~~~~ 235 (381)
+|||||+|||+|||||++++||+++||+|||||.||+++ ++++.|++|+++++|+|||||||+.+.+....+ ..+
T Consensus 252 ~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIPE~~f~l~---~ll~~l~~r~~~~~~~VIVVaEGa~~~~~~~~~--~~~ 326 (459)
T PTZ00286 252 GVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDIPLE---GVLEYIEQRLQKKGHCVIVVAEGAGQSLKDADL--DLG 326 (459)
T ss_pred cEEEEEecCcchhHHHHHHhhhhcCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEecCCccccccccc--ccc
Confidence 899999999999999999999994499999999999998 899999999998999999999999865544333 234
Q ss_pred ccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeC
Q 016855 236 KDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVN 315 (381)
Q Consensus 236 ~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~~~~ 315 (381)
+|++||+++++++.+|+++|++++..+ +..+.+|+++|||+|||++|+++||.+|++||..||+++++|+||+||++++
T Consensus 327 ~D~~Gn~~l~dig~~L~~~I~~~~~~~-~~~~~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~ 405 (459)
T PTZ00286 327 TDASGNKKLWDIGVYLKDEITKYLKKK-KPEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIGHVH 405 (459)
T ss_pred ccccCCcccccHHHHHHHHHHHHHhhc-cCceEEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Confidence 899999999999999999999988532 3346799999999999999999999999999999999999999999999999
Q ss_pred CccccccHHHH-HhhCCCCCCChHHHHHHHHhcCCCCCCChHHHhHHhhh
Q 016855 316 SRHAYIPIARV-TETQKTVKLTDRMWARLLASTNQPSFLNCSEVLHHQEK 364 (381)
Q Consensus 316 ~~~~~vpl~~~-~~~~k~v~~~~~~~~~~l~~~~~~~F~~~~~~~~~~~~ 364 (381)
++++++||+++ ....|.|++++.+|.+++..||||+|+++.+...+|+.
T Consensus 406 ~~~~~vPl~~v~~~~~~~v~~~~~~w~~~~~~tgqp~~~~~~~~~~~~~~ 455 (459)
T PTZ00286 406 NNYVMIPIKEMSGNYRRRVNPEGRLWQRMLAITGQPSFLNNEEIERHQRR 455 (459)
T ss_pred CEEEEEeHHHHhCCCccccCcchHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 99999999995 45668899999999999999999999999999988875
No 3
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=6e-94 Score=726.64 Aligned_cols=347 Identities=50% Similarity=0.836 Sum_probs=323.9
Q ss_pred ecccCCCCCcHHHHHhhhc-------C-CEEEEEccchhhhhc---CCeEeCChhhHhchhhcCCccccccCCCCchHHH
Q 016855 4 ISSVICFCYSLPLFVKHLH-------H-NSLIEFQGGYRGFYS---KNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 72 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~-------~-~~V~G~~~G~~GL~~---~~~~~L~~~~v~~i~~~GGt~LGtsR~~~~~~~i 72 (381)
|-..|++|||||++|+++. + ++||||++||+||++ +++++|+++.+++|+++|||+|||||++++++++
T Consensus 85 IvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGTiLGTsR~~~~~~~i 164 (443)
T PRK06830 85 IVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGTILGSSRGPQDPEEI 164 (443)
T ss_pred EECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCccccCCCCchhHHHH
Confidence 5578999999999987543 3 799999999999998 8999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 016855 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 152 (381)
Q Consensus 73 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S 152 (381)
+++|++++||+||+|||||||++|++|++++.++|++|+||||||||||||++||+|||||||+++++++|++++.||.|
T Consensus 165 v~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~a~~aI~~~~~eA~s 244 (443)
T PRK06830 165 VDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANG 244 (443)
T ss_pred HHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCceEEEEecCCCchhhhccCCc
Q 016855 153 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPA 232 (381)
Q Consensus 153 ~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~~~~iIvVsEG~~~~~~~~~~~~ 232 (381)
|++||||||+|||+|||||+++|||+.+||+|||||.||+++++.++++.|++|+++++|+|||||||+.+.+.. .
T Consensus 245 ~~~rv~iVEvMGR~sG~lA~~aaLA~~~ad~ilIPE~~f~l~~~~~ll~~l~~r~~~~~~~VIVVAEGag~~l~~----~ 320 (443)
T PRK06830 245 APNGIGLVKLMGRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFD----D 320 (443)
T ss_pred hCCcEEEEEECCCcccHHHHHHHHhcCCCCEEEecCCCCCchhHHHHHHHHHHHHHhCCceEEEEecCccccccc----c
Confidence 987899999999999999999999985699999999999999888899999999999999999999999654432 1
Q ss_pred cccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEE
Q 016855 233 VDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVG 312 (381)
Q Consensus 233 ~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~ 312 (381)
...+|++||+++++++.+|+++|+++++. ....+.+||++|||+|||++||++||.||++||..||+++++|+||+||+
T Consensus 321 ~~~~Da~gn~~l~~ig~~L~~~i~~~~~~-~~~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg 399 (443)
T PRK06830 321 TGETDASGNPKLGDIGLFLKDRIKEYFKA-RGIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVG 399 (443)
T ss_pred cccccccCCcccccHHHHHHHHHHHHhcc-cCCceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 23589999999999999999999998853 12235789999999999999999999999999999999999999999999
Q ss_pred EeCCccccccHHHHHhhCCCCCCChHHHHHHHHhcCCCCCCCh
Q 016855 313 PVNSRHAYIPIARVTETQKTVKLTDRMWARLLASTNQPSFLNC 355 (381)
Q Consensus 313 ~~~~~~~~vpl~~~~~~~k~v~~~~~~~~~~l~~~~~~~F~~~ 355 (381)
+++++++++||+++++..|+++++..+|.++|..||||+|.++
T Consensus 400 ~~~~~~~~vPl~~v~~~~k~vd~~~~~w~~~l~~tgq~~~~~~ 442 (443)
T PRK06830 400 RWNNRFVHLPIDLAVSKRKKVNPEGDLWRSVLESTGQPRSMGN 442 (443)
T ss_pred EECCEEEEEeHHHHhccCCCCCCccHHHHHHHHHhCCCccccc
Confidence 9999999999999999889999999999999999999999765
No 4
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=1.6e-93 Score=719.04 Aligned_cols=344 Identities=51% Similarity=0.853 Sum_probs=316.3
Q ss_pred ecccCCCCCcHHHHHhhh------cCC-EEEEEccchhhhhcCC--eEeCChhhHhchhhcCCccccccCCCCchHHHHH
Q 016855 4 ISSVICFCYSLPLFVKHL------HHN-SLIEFQGGYRGFYSKN--TLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVD 74 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl------~~~-~V~G~~~G~~GL~~~~--~~~L~~~~v~~i~~~GGt~LGtsR~~~~~~~i~~ 74 (381)
|-..|++|||||++|+++ +++ +|||+++||+||++++ .++|+++.+++|+++|||+|||||++++++++++
T Consensus 58 IltsGGdaPGmNa~Iravv~~a~~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~~~i~~ 137 (411)
T PLN02884 58 IVTCGGLCPGLNDVIRQIVFTLEIYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGAKTSDIVD 137 (411)
T ss_pred EEcCCCCCccHhHHHHHHHHHHHHcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceeccCCCCccHHHHHH
Confidence 456899999999998855 346 8999999999999999 6678999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhcC
Q 016855 75 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVE 154 (381)
Q Consensus 75 ~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~~ 154 (381)
+|++++||+||+|||||||++|++|+++++++|++++||||||||||||++||+|||||||+++++++|++++.||.|++
T Consensus 138 ~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~~~~ai~~l~~tA~s~~ 217 (411)
T PLN02884 138 SIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAY 217 (411)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999888988999999999999999999999999999999999999999998854
Q ss_pred cceEEEEecCCCccHHHHHHhhhcCC-ccEEEcCCCCCCCCChhhHHHHHHHHHHhCCceEEEEecCCCchhhhccCCcc
Q 016855 155 NGVGIVKLMGRYSGFISMYATLASRD-VDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAV 233 (381)
Q Consensus 155 ~rv~iVEvMGR~aG~LAl~aaLA~~~-ad~iliPE~~~~~~~~~~~~~~I~~~~~~~~~~iIvVsEG~~~~~~~~~~~~~ 233 (381)
+||||||+|||+|||||+++|||+ + ||+|||||.||+++++.++++.|+++++.++|+|||||||+...+... .
T Consensus 218 ~rv~iVEvMGR~aG~LAl~aalA~-g~ad~ilIPE~~f~~~~~~~~~~~i~~~~~~k~~~iIVVAEG~g~~~~~~----~ 292 (411)
T PLN02884 218 HGIGLVKLMGRSSGFIAMHASLAS-GQVDICLIPEVPFTLDGPNGVLRHLEHLIETKGSAVVCVAEGAGQDLLQK----T 292 (411)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHhc-CCCCEEEeCCCCCCcccHHHHHHHHHHHHhcCCcEEEEEecccccccccc----c
Confidence 689999999999999999999999 7 999999999999976668999999999988999999999995433221 1
Q ss_pred ccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEE
Q 016855 234 DEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGP 313 (381)
Q Consensus 234 ~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~~ 313 (381)
..+|++||+++++++.+|+++|++++.. ......+|+++|||+||||+|+++||.+|++||..||+++++|++|+||++
T Consensus 293 ~~~Da~G~~~l~~~~~~La~~i~~~~~~-~g~~~~~r~~~lGy~qRgg~p~a~Dr~la~~lG~~AV~~~~~G~sg~mV~l 371 (411)
T PLN02884 293 NATDASGNPVLGDIGVHLQQEIKKHFKD-IGVPADVKYIDPTYMIRACRANASDAILCTVLGQNAVHGAFAGFSGITVGI 371 (411)
T ss_pred ccccccCCcccCcHHHHHHHHHHHHhhc-cCCCceEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 2479999999999999999999988631 112246889999999999999999999999999999999999999999999
Q ss_pred eCCccccccHHHHHhhCCCCCCChHHHHHHHHhcCCCCCC
Q 016855 314 VNSRHAYIPIARVTETQKTVKLTDRMWARLLASTNQPSFL 353 (381)
Q Consensus 314 ~~~~~~~vpl~~~~~~~k~v~~~~~~~~~~l~~~~~~~F~ 353 (381)
+++++.++||+++++.+|+|++++.+|++++..+|||+|.
T Consensus 372 ~~~~~~~vpl~~v~~~~k~vd~~~~~~~~~~~~~gqp~~~ 411 (411)
T PLN02884 372 CNTHYVYLPIPEVIAYPRRVDPNSRMWHRCLTSTGQPDFH 411 (411)
T ss_pred ECCEEEEEeHHHHhcCCCCCCCCcHHHHHHHHhcCCCCCC
Confidence 9999999999999998999999999999999999999993
No 5
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=5.2e-88 Score=674.17 Aligned_cols=338 Identities=25% Similarity=0.391 Sum_probs=302.4
Q ss_pred eecccCCCCCcHHHHHhhhc--------CCEEEEEccchhhhhcCCeEeCChh--hH-hchhhcCCccccccCCCC----
Q 016855 3 IISSVICFCYSLPLFVKHLH--------HNSLIEFQGGYRGFYSKNTLTLSPK--VV-NDIHKRGGTILRTSRGGH---- 67 (381)
Q Consensus 3 ~~~~~~~~~pg~~~vi~gl~--------~~~V~G~~~G~~GL~~~~~~~L~~~--~v-~~i~~~GGt~LGtsR~~~---- 67 (381)
.|-..|++|||||++|+++. +++|||+++||+||+++++++|+.. ++ +.|+++|||+|||||+++
T Consensus 7 ~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt~LGtsR~~~~~~~ 86 (403)
T PRK06555 7 ALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKLTNVA 86 (403)
T ss_pred EEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCceeccCCCCccccc
Confidence 35678999999999988663 3899999999999999999999986 44 459999999999999753
Q ss_pred -------------chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHH
Q 016855 68 -------------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 134 (381)
Q Consensus 68 -------------~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdT 134 (381)
++++++++|++++||+||+||||||+++|++|++++.++|++++||||||||||||++||+||||||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~T 166 (403)
T PRK06555 87 DCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWT 166 (403)
T ss_pred hhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHH
Confidence 2679999999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCcceEEEEecCCCccHHHHHHhhh--------------------cCCccEEEcCCCCCCCC
Q 016855 135 AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLA--------------------SRDVDCCLIPESPFYLE 194 (381)
Q Consensus 135 A~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA--------------------~~~ad~iliPE~~~~~~ 194 (381)
|+++++++|+++++||.||++.++|||||||+|||||+++||| + +||+|||||.||+++
T Consensus 167 A~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~-gad~ilIPE~~~~~e 245 (403)
T PRK06555 167 AAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERW-DIHAVYLPEMAFDLE 245 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCC-CCcEEEccCCCCCHH
Confidence 9999999999999999999754555599999999999999999 5 799999999999998
Q ss_pred ChhhHHHHHHHHHHhCCceEEEEecCCCchhhhccCCc---cccccccCCccchh--hHHHHHHHHHhhhccccceeeee
Q 016855 195 GPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPA---VDEKDASGNRLLLD--IGLWLTQKIKDHFTKVQKMMINM 269 (381)
Q Consensus 195 ~~~~~~~~I~~~~~~~~~~iIvVsEG~~~~~~~~~~~~---~~~~D~~G~~~l~~--i~~~l~~~i~~~~~~~~r~~~~~ 269 (381)
++++.|++++++++|+|||||||+......+.+.. ...+|++||+++.+ ++.+|+++|+++++.+ .+
T Consensus 246 ---~~~~~ik~~~~~k~~~iIvVaEG~~~~~~~~~~~~~g~~~~~Da~G~~~l~~~~~g~~la~~i~~~~g~e-----~~ 317 (403)
T PRK06555 246 ---AEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINPGAWFAKQFAELLGAE-----KV 317 (403)
T ss_pred ---HHHHHHHHHHHhCCCEEEEEeCCCCcccchhhhhhccCccccccccceecCCCcHHHHHHHHHHHHhCCC-----ce
Confidence 79999999998899999999999965433322211 22489999999975 6899999999988753 25
Q ss_pred eEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEE---eCCccccccHHHHHhhCCCCCCChHHHHHHHHh
Q 016855 270 KYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGP---VNSRHAYIPIARVTETQKTVKLTDRMWARLLAS 346 (381)
Q Consensus 270 r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~~---~~~~~~~vpl~~~~~~~k~v~~~~~~~~~~l~~ 346 (381)
|+++|||+||||+|+++||.+|++||..||+++++|++| ||++ +++++.++||+++.+ .|+++++..||.+++..
T Consensus 318 r~~~lGy~qRgg~psa~Dr~la~~lG~~AV~~~~~G~sg-~v~~~~~~~g~~~~vp~~~~~~-~k~~~~~~~~~~~~~~~ 395 (403)
T PRK06555 318 MVQKSGYFARSAPANAEDLRLIKSMVDLAVECALRGVSG-VIGHDEEQGGKLRAIEFPRIKG-GKAFDTSTPWFTELLDE 395 (403)
T ss_pred EEecCChhhcCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-eEEEEeeeCCEEEEEEHHHHhc-CCCCCCCHHHHHHHHHh
Confidence 667899999999999999999999999999999999999 6787 899999999999988 48999999999999999
Q ss_pred cCCCC
Q 016855 347 TNQPS 351 (381)
Q Consensus 347 ~~~~~ 351 (381)
++||.
T Consensus 396 ~~q~~ 400 (403)
T PRK06555 396 IGQPY 400 (403)
T ss_pred hCCCC
Confidence 99996
No 6
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.5e-85 Score=664.71 Aligned_cols=340 Identities=21% Similarity=0.291 Sum_probs=299.7
Q ss_pred eecccCCCCCcHHHHHhhhc------C--CEEEEEccchhhhhcCCeEeCChhhHhc---hhhcCCccccccCCCC----
Q 016855 3 IISSVICFCYSLPLFVKHLH------H--NSLIEFQGGYRGFYSKNTLTLSPKVVND---IHKRGGTILRTSRGGH---- 67 (381)
Q Consensus 3 ~~~~~~~~~pg~~~vi~gl~------~--~~V~G~~~G~~GL~~~~~~~L~~~~v~~---i~~~GGt~LGtsR~~~---- 67 (381)
.|-..|++|||||++|+|+. + ++|||+++||+||+++++++|+..+++. |.++|||+|||||+++
T Consensus 7 ~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt~LgssR~~~~~~~ 86 (416)
T PRK14072 7 LYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSGALGSCRYKLKSLE 86 (416)
T ss_pred EEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCeEeccCCCCCcccc
Confidence 45678999999999988654 3 7999999999999999999999887777 8999999999999853
Q ss_pred ----chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHH
Q 016855 68 ----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 143 (381)
Q Consensus 68 ----~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai 143 (381)
++++++++|++++||+||+|||||||++|++|+++++++|.+++||||||||||||++||+|||||||+++++++|
T Consensus 87 ~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~~i~~ai 166 (416)
T PRK14072 87 EDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKYIATSV 166 (416)
T ss_pred cChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHHHHHHHH
Confidence 4789999999999999999999999999999999998889889999999999999999999999999999999999
Q ss_pred HHH----HHhhhhcCcceEEEEecCCCccHHHHHHhhh-----cCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCceE
Q 016855 144 NAA----HVEVESVENGVGIVKLMGRYSGFISMYATLA-----SRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMV 214 (381)
Q Consensus 144 ~~l----~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA-----~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~~~~i 214 (381)
+++ ++++.|| ||||||||||+|||||+++||| + +||+|||||.||+++ +++++|++++++++|+|
T Consensus 167 ~~l~~D~~~ta~s~--Rv~iVEvMGR~aG~LAl~a~lA~~~~~~-gad~iliPE~~~~~~---~~~~~i~~~~~~~~~~i 240 (416)
T PRK14072 167 LEAALDVAAMANTS--KVFILEVMGRHAGWLAAAAALAKQNPDD-APHLIYLPERPFDEE---KFLADVRAIVKRYGYCV 240 (416)
T ss_pred HHHHHHHHhcccCc--eEEEEEEeCcchhHHHHHHhhccccCCC-CccEEEccCCCCCHH---HHHHHHHHHHHhCCCeE
Confidence 999 7777776 7999999999999999999999 7 799999999999988 89999999988899999
Q ss_pred EEEecCCCchhhhccCCc-cccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCC--CChhhHHHH
Q 016855 215 IVVAEGAGQEFVAQSMPA-VDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIP--SNGSDNIYC 291 (381)
Q Consensus 215 IvVsEG~~~~~~~~~~~~-~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~--P~~~Dr~la 291 (381)
||||||+.... .+.+.+ ...+|++||+++++++++|+++|+++++. .+|+++|||+||||+ ||++||.+|
T Consensus 241 vvVaEG~~~~~-g~~i~e~~~~~D~~gh~~l~g~~~~La~~i~~~~g~------~~R~~~LG~~QRgg~~~ps~~Dr~~a 313 (416)
T PRK14072 241 VVVSEGIRDAD-GKFIAEAGLAEDAFGHAQLGGVAPVLANLIKEKLGK------KVHWAVLDYLQRAARHIASKTDVEEA 313 (416)
T ss_pred EEEecCccccc-ccchhccccccCCCCCcccccHHHHHHHHHHHHhCC------eEEEEeCChhhhCCCCCCCHHHHHHH
Confidence 99999985321 111111 12359999999999999999999999874 456788999999999 999999999
Q ss_pred HHHHHHHHHHHHcCCCceEEEEeCC-------ccccccHHHHHhhCCCCC------------CChHHHHHHHHh-cCCCC
Q 016855 292 TLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIARVTETQKTVK------------LTDRMWARLLAS-TNQPS 351 (381)
Q Consensus 292 ~~lG~~Av~~~~~G~sg~mv~~~~~-------~~~~vpl~~~~~~~k~v~------------~~~~~~~~~l~~-~~~~~ 351 (381)
++||..||+++.+|++|+||+++++ ++..+||++++++.|+++ .++..|.+.|.. ...+.
T Consensus 314 ~~lG~~AV~~~~~G~~g~mv~l~~~~~~~y~~~~~~vpl~~v~~~~k~v~~~~i~~~~~~v~~~~~~y~~pli~ge~~~~ 393 (416)
T PRK14072 314 YAVGKAAVEYALAGKNGVMPAIRRTSDDPYKWKIGLVPLSKVANKEKKMPPEFINEDGNGITEAFRRYLRPLIQGEPYPP 393 (416)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEcCCCCcceeEEEcccHHHHHhhcCcCCHHHHhcCCCCcCHHHHHHHHHHhCCCCCCc
Confidence 9999999999999999999999998 899999999998766655 334578887773 44555
Q ss_pred CCCh
Q 016855 352 FLNC 355 (381)
Q Consensus 352 F~~~ 355 (381)
|.+-
T Consensus 394 ~~~~ 397 (416)
T PRK14072 394 YKNG 397 (416)
T ss_pred ccCC
Confidence 5553
No 7
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=9.3e-85 Score=648.46 Aligned_cols=320 Identities=27% Similarity=0.370 Sum_probs=289.2
Q ss_pred eecccCCCCCcHHHHHhhhc-------CCEEEEEccchhhhhcC--CeEeCChhhHhchhhcCCccccccCC-C------
Q 016855 3 IISSVICFCYSLPLFVKHLH-------HNSLIEFQGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRG-G------ 66 (381)
Q Consensus 3 ~~~~~~~~~pg~~~vi~gl~-------~~~V~G~~~G~~GL~~~--~~~~L~~~~v~~i~~~GGt~LGtsR~-~------ 66 (381)
.|-..|++|||||++|+++. +++|||+++||+||+++ ++.+|++.+++.|.++|||+|||||. .
T Consensus 8 ~IltsGG~apGmNa~i~~vv~~a~~~~g~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~ 87 (360)
T PRK14071 8 GILTSGGDCAGLNAVIRAVVHRARGTYGWEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGDPFAFPM 87 (360)
T ss_pred EEECCCCCchhHHHHHHHHHHHHHhcCCCEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCCcccccc
Confidence 35678999999999988543 37999999999999999 89999999999999999999999973 1
Q ss_pred ------CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHH
Q 016855 67 ------HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQ 140 (381)
Q Consensus 67 ------~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~ 140 (381)
+++++++++|++++||+||+|||||||++|++|++. . +++||||||||||||++||+|||||||+++++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~---~--~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~~~ 162 (360)
T PRK14071 88 PDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ---G--GINLVGIPKTIDNDVGATEVSIGFDTAVNIAT 162 (360)
T ss_pred ccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh---c--CCcEEEecccccCCCcCcccCcChhHHHHHHH
Confidence 246899999999999999999999999999999863 2 47799999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCceEEEEec
Q 016855 141 RAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAE 219 (381)
Q Consensus 141 ~ai~~l~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~~iIvVsE 219 (381)
++||++++||.|| +||||||||||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|+||||||
T Consensus 163 ~~id~i~~ta~s~-~rv~ivEvMGR~~G~LAl~~~la~-ga~~iliPE~~~~~~---~l~~~i~~~~~~~~~~~iivvsE 237 (360)
T PRK14071 163 EALDRLHFTAASH-NRVMILEVMGRDAGHIALAAGIAG-GADVILIPEIPYTLE---NVCKKIRERQEEGKNFCLVVVSE 237 (360)
T ss_pred HHHHHHHhhhccc-CCEEEEEECCCCccHHHHHhHhhc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEEEEEcC
Confidence 9999999999998 579999999999999999999999 899999999999988 899999999987 7899999999
Q ss_pred CCCchhhhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHH
Q 016855 220 GAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAV 299 (381)
Q Consensus 220 G~~~~~~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av 299 (381)
|+.... .+. ...+|++||+++++++++|+++|+++++.+ +|...|||+||||.||++||.+|++||..||
T Consensus 238 G~~~~~-g~~---~~~~d~~g~~~~~~~~~~l~~~i~~~~g~~------~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av 307 (360)
T PRK14071 238 AVRTEE-GEQ---VTKTQALGEDRYGGIGQYLAEQIAERTGAE------TRVTVLGHIQRGGIPSPRDRLLASAFGVAAV 307 (360)
T ss_pred CCcccc-ccc---ccccccccccccCcHHHHHHHHHHHhcCCC------eeEEecChhhcCCCCChHHHHHHHHHHHHHH
Confidence 986421 111 123799999999999999999999988754 4556799999999999999999999999999
Q ss_pred HHHHcCCCceEEEEeCCccccccHHHHHhhCCCCCCChHHHHH
Q 016855 300 HGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRMWAR 342 (381)
Q Consensus 300 ~~~~~G~sg~mv~~~~~~~~~vpl~~~~~~~k~v~~~~~~~~~ 342 (381)
+++++|++|+||+++++++..+||+++++.+|++++++.+|..
T Consensus 308 ~~~~~G~t~~mv~~~~~~~~~vpl~~v~~~~~~v~~~~~~~~~ 350 (360)
T PRK14071 308 DLIAQGKFDRMVAWQNRQVVSVPIAEAIATYRAVDPEGTLVKT 350 (360)
T ss_pred HHHHcCCCCEEEEEECCEEEEEeHHHHhcCCCCCCccHHHHHH
Confidence 9999999999999999999999999999888999997766654
No 8
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=3.6e-84 Score=636.10 Aligned_cols=305 Identities=32% Similarity=0.463 Sum_probs=278.3
Q ss_pred cccCCCCCcHHHHHhhhc-------CCEEEEEccchhhhhcCCeEeC-ChhhHhchhhcCCccccccCCCC------chH
Q 016855 5 SSVICFCYSLPLFVKHLH-------HNSLIEFQGGYRGFYSKNTLTL-SPKVVNDIHKRGGTILRTSRGGH------DTN 70 (381)
Q Consensus 5 ~~~~~~~pg~~~vi~gl~-------~~~V~G~~~G~~GL~~~~~~~L-~~~~v~~i~~~GGt~LGtsR~~~------~~~ 70 (381)
-..|++|||||++++++. +++|||+++||+||+++++++| +|++++.|.++|||+|||||+++ +++
T Consensus 5 ltsGG~apGmN~~i~~~v~~a~~~~g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~ 84 (324)
T TIGR02483 5 LTGGGDCPGLNAVIRGVVRRAIAEYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTILGSSRTNPFKYEEDGDD 84 (324)
T ss_pred ECCCCCcHHHHHHHHHHHHHHHHcCCceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCccccCCCCCccccCHHHHH
Confidence 345999999999987433 4899999999999999999999 99999999999999999999753 478
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhh
Q 016855 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEV 150 (381)
Q Consensus 71 ~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA 150 (381)
+++++|++++||+||+|||||||++|++|++ .+ ++|||||||||||+++||+|||||||+++++++++++++||
T Consensus 85 ~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~----~g--i~vigiPkTIDNDl~gtd~tiGfdTA~~~~~~~i~~i~~ta 158 (324)
T TIGR02483 85 KIVANLKELGLDALIAIGGDGTLGIARRLAD----KG--LPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTA 158 (324)
T ss_pred HHHHHHHHcCCCEEEEECCchHHHHHHHHHh----cC--CCEEeeccccCCCCcCCccCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986 34 77999999999999999999999999999999999999999
Q ss_pred hhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCceEEEEecCCCchhhhcc
Q 016855 151 ESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEFVAQS 229 (381)
Q Consensus 151 ~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~~iIvVsEG~~~~~~~~~ 229 (381)
.||+ ||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|++||||||+........
T Consensus 159 ~S~~-r~~ivEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~v~~~~~~g~~~~vvvvsEG~~~~~~~~~ 233 (324)
T TIGR02483 159 ESHH-RVMVVEVMGRHAGWIALHSGIAG-GADVILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGAKPKGGEMV 233 (324)
T ss_pred hhcC-CEEEEEEcCCChhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHhCCCceEEEEecCccccccchh
Confidence 9985 79999999999999999999999 899999999999987 899999999988 79999999999965432222
Q ss_pred CCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCce
Q 016855 230 MPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGF 309 (381)
Q Consensus 230 ~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~ 309 (381)
.....+|+|||+++++++++|+++|+++++. .+|...|||+||||+|+++||.+|++||.+||+++++|++|+
T Consensus 234 -~~~~~~d~~gh~~~~~~~~~l~~~i~~~~g~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~ 306 (324)
T TIGR02483 234 -VQEGVKDAFGHVRLGGIGNWLAEEIERRTGI------ETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFGH 306 (324)
T ss_pred -ccccccccccCcccCcHHHHHHHHHHHhcCC------cceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Confidence 1233589999999999999999999998874 356678999999999999999999999999999999999999
Q ss_pred EEEEeCCccccccHHHHH
Q 016855 310 TVGPVNSRHAYIPIARVT 327 (381)
Q Consensus 310 mv~~~~~~~~~vpl~~~~ 327 (381)
||++++++++++||++++
T Consensus 307 mv~~~~~~~~~~p~~~~~ 324 (324)
T TIGR02483 307 MVALRGTDIVYVPIAEAV 324 (324)
T ss_pred EEEEECCEEEEeeHHHhC
Confidence 999999999999999863
No 9
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=2.8e-83 Score=633.97 Aligned_cols=315 Identities=26% Similarity=0.350 Sum_probs=288.2
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCCC-----chHHH
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNKI 72 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~~~i 72 (381)
|-..|++|||||++++|+.. ++||||++||+||+++++++|+++.++.|.++|||+|||||+++ +++++
T Consensus 5 Il~sGG~apG~N~~i~~~v~~~~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~~~~~~~ 84 (338)
T cd00363 5 VLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTEEGRAKA 84 (338)
T ss_pred EEccCCCchhHHHHHHHHHHHHHHCCCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccCCCCccCCHHHHHHH
Confidence 55689999999999997764 89999999999999999999999999999999999999999764 47899
Q ss_pred HHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 016855 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 152 (381)
Q Consensus 73 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S 152 (381)
+++|++++||+||+|||||||++|++|++++.+++.+++|||||||||||+++||+|||||||+++++++|++++.||.|
T Consensus 85 ~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~~~~~i~~l~~~a~s 164 (338)
T cd00363 85 AENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRIRDTASS 164 (338)
T ss_pred HHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCceEEEEecCCCchhhhccCC
Q 016855 153 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEFVAQSMP 231 (381)
Q Consensus 153 ~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~~iIvVsEG~~~~~~~~~~~ 231 (381)
| +||||||+|||+|||||+++|||+ +||+|||||.|++.+.+.++++.|++|+++ ++|++||||||+.+.
T Consensus 165 ~-~rv~ivEvMGR~~G~Lal~~ala~-~ad~iliPE~~~~~~~~~~~~~~i~~r~~~~~~~~vivvsEG~~~~------- 235 (338)
T cd00363 165 H-QRTFVVEVMGRHCGDIALEAGLAT-GADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGAIDF------- 235 (338)
T ss_pred C-CCEEEEEECCcCHHHHHHHHHHHh-CCCEEEeCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCCCccc-------
Confidence 7 589999999999999999999999 799999999999555555899999999887 789999999999632
Q ss_pred ccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEE
Q 016855 232 AVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTV 311 (381)
Q Consensus 232 ~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv 311 (381)
.|++ ....+|+++|+++++. .+|+..|||+|||++|+++||.+|++||..|++++++|++|+||
T Consensus 236 -------~~~~---~~~~~l~~~i~~~~~~------~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g~tg~mv 299 (338)
T cd00363 236 -------IPKP---ITEKLLAKLVEERLGF------DTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEGTGGTPV 299 (338)
T ss_pred -------cccC---chHHHHHHHHHHHcCC------ceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCCcEE
Confidence 1221 1256899999998864 45667899999999999999999999999999999999999999
Q ss_pred EEeCC---ccccccHHHHHhhCCC--CCCChHHHHHH
Q 016855 312 GPVNS---RHAYIPIARVTETQKT--VKLTDRMWARL 343 (381)
Q Consensus 312 ~~~~~---~~~~vpl~~~~~~~k~--v~~~~~~~~~~ 343 (381)
+++++ ++.++||+++++.+|+ |+++..||...
T Consensus 300 ~~~~~~~~~~~~vpl~~~~~~~~~~~~~~~~~~~~~~ 336 (338)
T cd00363 300 GIQNLNENQVVRHPLTEAVNMTKRVGVDLEGRPFKKF 336 (338)
T ss_pred EEECCccCEEEEecHHHHHhhhcccccCCChHHHHHh
Confidence 99999 9999999999999998 68888888654
No 10
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=2.9e-83 Score=627.61 Aligned_cols=291 Identities=27% Similarity=0.369 Sum_probs=268.3
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCCC-----chHHH
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNKI 72 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~~~i 72 (381)
|-..|++|||||++|+++.. ++|||+++||+||+++++++|++..++.|+++|||+|||||+++ +++++
T Consensus 5 IltsGG~apGmNa~i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~~~~~~ 84 (317)
T cd00763 5 VLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKDEEGQAKA 84 (317)
T ss_pred EEccCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCCCccCCHHHHHHH
Confidence 44569999999999886544 89999999999999999999999999999999999999999752 57899
Q ss_pred HHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 016855 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 152 (381)
Q Consensus 73 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S 152 (381)
+++|++++||+||+|||||||++|++|+++ + ++|||||||||||+++||+|||||||+++++++++++++||.|
T Consensus 85 ~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~----~--i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~~~~i~~i~~ta~s 158 (317)
T cd00763 85 IEQLKKHGIDALVVIGGDGSYMGAMRLTEH----G--FPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRIRDTSSS 158 (317)
T ss_pred HHHHHHcCCCEEEEECCchHHHHHHHHHHc----C--CCEEEecccccCCCCCCccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999874 4 6799999999999999999999999999999999999999999
Q ss_pred cCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCceEEEEecCCCchhhhccCC
Q 016855 153 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEFVAQSMP 231 (381)
Q Consensus 153 ~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~~iIvVsEG~~~~~~~~~~~ 231 (381)
| +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|++||||||+..
T Consensus 159 ~-~rv~ivEvMGR~~G~LA~~~ala~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~vivvaEG~~~-------- 225 (317)
T cd00763 159 H-QRISVVEVMGRHCGDIALAAGIAG-GAEFIVIPEAEFDRE---EVANRIKAGIERGKKHAIVVVAEGVYD-------- 225 (317)
T ss_pred C-CCEEEEEeCCCChHHHHHHHHHHc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCCCC--------
Confidence 8 589999999999999999999999 799999999999988 899999999887 78999999999842
Q ss_pred ccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEE
Q 016855 232 AVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTV 311 (381)
Q Consensus 232 ~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv 311 (381)
...|+++++++++.+ +|...|||+||||+|+++||.+|++||.+||+++++|++|+||
T Consensus 226 ----------------~~~l~~~l~~~~g~~------~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g~~~~mv 283 (317)
T cd00763 226 ----------------VDELAKEIEEATGFE------TRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAGKGGLAV 283 (317)
T ss_pred ----------------HHHHHHHHHHHhCCC------cceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 235788888887654 4557899999999999999999999999999999999999999
Q ss_pred EEeCCccccccHHHHHhhCCCCCC
Q 016855 312 GPVNSRHAYIPIARVTETQKTVKL 335 (381)
Q Consensus 312 ~~~~~~~~~vpl~~~~~~~k~v~~ 335 (381)
+++++++.++||+++.+..|++++
T Consensus 284 ~~~~~~~~~~pl~~~~~~~k~~~~ 307 (317)
T cd00763 284 GIQNEQLVHHDIIDAIENMKPFKK 307 (317)
T ss_pred EEECCEEEEecHHHHhhCCCCCCH
Confidence 999999999999999988888887
No 11
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=5.8e-83 Score=621.12 Aligned_cols=285 Identities=28% Similarity=0.411 Sum_probs=261.8
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCCC-----chHHH
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNKI 72 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~~~i 72 (381)
|-..|++|||||++|+++.. ++|||+++||+||+++++++|++.+++.|+++|||+|||||+++ +++++
T Consensus 4 IltsGG~apG~Na~i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~~~~~~ 83 (301)
T TIGR02482 4 ILTSGGDAPGMNAAIRAVVRTAIYHGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEEGRQKA 83 (301)
T ss_pred EEccCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHHHHHHH
Confidence 34569999999999987654 89999999999999999999999999999999999999999752 47899
Q ss_pred HHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 016855 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 152 (381)
Q Consensus 73 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S 152 (381)
+++|++++||+||+|||||||++|++|++++ +++|||||||||||+++||+|||||||+++++++|+++++||.|
T Consensus 84 ~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~-----~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~~ta~s 158 (301)
T TIGR02482 84 VENLKKLGIEGLVVIGGDGSYTGAQKLYEEG-----GIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTATS 158 (301)
T ss_pred HHHHHHcCCCEEEEeCCchHHHHHHHHHHhh-----CCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999998863 57899999999999999999999999999999999999999999
Q ss_pred cCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCceEEEEecCCCchhhhccCC
Q 016855 153 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEFVAQSMP 231 (381)
Q Consensus 153 ~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~~iIvVsEG~~~~~~~~~~~ 231 (381)
|+ ||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++|+++ ++|++||||||+..
T Consensus 159 ~~-rv~ivEvMGR~~G~lAl~~~la~-gad~iliPE~~~~~~---~l~~~i~~r~~~g~~~~iIvvaEG~~~-------- 225 (301)
T TIGR02482 159 HE-RAFVIEVMGRHAGDLALYSGIAT-GAEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEGNIV-------- 225 (301)
T ss_pred CC-CEEEEEeCCCCHHHHHHHHHHHc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEEEEEeCCCcC--------
Confidence 85 79999999999999999999999 899999999999988 899999999887 78999999999531
Q ss_pred ccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEE
Q 016855 232 AVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTV 311 (381)
Q Consensus 232 ~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv 311 (381)
| .+..|+++|+++++. .+|+..|||+||||+||++||.+|++||.+||+++++|++|+||
T Consensus 226 --------~------~~~~l~~~l~~~~g~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv 285 (301)
T TIGR02482 226 --------G------SAKEVAKKIEEATGI------ETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGKGGVMI 285 (301)
T ss_pred --------C------cHHHHHHHHHHhcCC------eeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 0 134688888877664 45667899999999999999999999999999999999999999
Q ss_pred EEeCCccccccHHHH
Q 016855 312 GPVNSRHAYIPIARV 326 (381)
Q Consensus 312 ~~~~~~~~~vpl~~~ 326 (381)
+++++++.++||+++
T Consensus 286 ~~~~~~~~~~p~~~~ 300 (301)
T TIGR02482 286 GIQNNKIVTHPIEEA 300 (301)
T ss_pred EEECCEEEEeeHHHh
Confidence 999999999999986
No 12
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.4e-82 Score=621.92 Aligned_cols=292 Identities=29% Similarity=0.402 Sum_probs=270.2
Q ss_pred eecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCCC-----chHH
Q 016855 3 IISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNK 71 (381)
Q Consensus 3 ~~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~~~ 71 (381)
.|-..|++|||||++++|+.. ++||||++||+||+++++++|++++++.|.++|||+|||||+++ ++++
T Consensus 5 ~Il~sGG~apG~Na~i~~~~~~~~~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~~~~~~ 84 (320)
T PRK03202 5 GVLTSGGDAPGMNAAIRAVVRTAISEGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDEEGRAK 84 (320)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHHHCCCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCHHHHHH
Confidence 356789999999999987765 89999999999999999999999999999999999999999753 4889
Q ss_pred HHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhh
Q 016855 72 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 151 (381)
Q Consensus 72 i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~ 151 (381)
++++|++++||+||+|||||||++|++|+++ +++|||||||||||+++||+|||||||+++++++|+++++||.
T Consensus 85 ~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~~~~i~~l~~~a~ 158 (320)
T PRK03202 85 AIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRLRDTAS 158 (320)
T ss_pred HHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCccCcCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999863 4779999999999999999999999999999999999999999
Q ss_pred hcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCceEEEEecCCCchhhhccC
Q 016855 152 SVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEFVAQSM 230 (381)
Q Consensus 152 S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~~iIvVsEG~~~~~~~~~~ 230 (381)
||+ ||||||+|||+|||||+++|||+ +||+|||||.|++++ ++++.|++|+++ ++|++||||||+..
T Consensus 159 s~~-rv~iVEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~i~~r~~~g~~~~vivvsEg~~~------- 226 (320)
T PRK03202 159 SHE-RVFIVEVMGRHAGDLALHAGIAG-GAEVILIPEVPFDIE---ELCAKIKKGRERGKKHAIIVVAEGVMP------- 226 (320)
T ss_pred ccC-CEEEEEECCCChHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHhcCCcEEEEEeCCCCC-------
Confidence 984 79999999999999999999999 899999999999988 899999999988 79999999999853
Q ss_pred CccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceE
Q 016855 231 PAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFT 310 (381)
Q Consensus 231 ~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~m 310 (381)
...|+++|+++++. .+|+++|||+||||+|+++||.+|++||.+||+++++|++|+|
T Consensus 227 -----------------~~~l~~~i~~~~~~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~~ 283 (320)
T PRK03202 227 -----------------AEELAKEIEERTGL------ETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEGKGGRM 283 (320)
T ss_pred -----------------HHHHHHHHHHHhCC------ceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeE
Confidence 12488888888763 4677899999999999999999999999999999999999999
Q ss_pred EEEeCCccccccHHHHH-hhCCCCCC
Q 016855 311 VGPVNSRHAYIPIARVT-ETQKTVKL 335 (381)
Q Consensus 311 v~~~~~~~~~vpl~~~~-~~~k~v~~ 335 (381)
|+++++++.++||++++ ++.|++++
T Consensus 284 v~~~~~~~~~vpl~~v~~~~~~~~~~ 309 (320)
T PRK03202 284 VGIQNNKIVHVPIEEAVENMKHPFDK 309 (320)
T ss_pred EEEECCEEEEEeHHHHHhcCCCCCCH
Confidence 99999999999999999 66666666
No 13
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=1.3e-79 Score=656.57 Aligned_cols=341 Identities=22% Similarity=0.283 Sum_probs=302.6
Q ss_pred ecccCCCCCcHHHHHhhhc------CCEEEEEccchhhhhcC--CeEeCChhhHhchhhcCCccccccCCCC-----chH
Q 016855 4 ISSVICFCYSLPLFVKHLH------HNSLIEFQGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTN 70 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~------~~~V~G~~~G~~GL~~~--~~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~~ 70 (381)
|-..|++|||||++|+++. +++|||+++||+||+++ ++++|+|+++++|+++|||+|||||+++ +.+
T Consensus 5 IltsGGdapGmNaaIravv~~a~~~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~~~~~~~ 84 (745)
T TIGR02478 5 VLTSGGDAQGMNAAVRAVVRMAIYVGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTIIGTARCKEFRERPGRL 84 (745)
T ss_pred EEecCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCceecCCCCCcccCHHHHH
Confidence 5567999999999998654 38999999999999999 9999999999999999999999999863 468
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHH-----------------HHHcCCCceEeeeccccccCccCCCCCCChH
Q 016855 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 133 (381)
Q Consensus 71 ~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~-----------------~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFd 133 (381)
+++++|++++||+||+|||||||++|+.|+++ ..+++.+++|||||||||||+++||+|||||
T Consensus 85 ~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd~TiGfd 164 (745)
T TIGR02478 85 KAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGAD 164 (745)
T ss_pred HHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCcCCCCHH
Confidence 99999999999999999999999999987753 2344567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCc
Q 016855 134 TAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGH 212 (381)
Q Consensus 134 TA~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~ 212 (381)
||+++++++||++++||.||+ |+||||||||+|||||+++|||+ +||+|||||.||+.+++.++++.++++.+. ++|
T Consensus 165 TA~~~i~~aid~i~~ta~Sh~-R~fvvEvMGR~~G~LAl~aalA~-gad~iliPE~~~~~~~~~~i~~~l~~~~~~gk~~ 242 (745)
T TIGR02478 165 SALHRICEAIDAISSTAQSHQ-RAFVVEVMGRHCGYLALMAAIAT-GADYVFIPERPPEEGWEDQLCHKLKRNRKAGKRK 242 (745)
T ss_pred HHHHHHHHHHHHHHhhhhccC-CEEEEEEcCccccHHHHHHHhcc-CCCEEEecCCCCCchHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999985 79999999999999999999999 899999999999966555788877776554 589
Q ss_pred eEEEEecCCCchhhhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHH
Q 016855 213 MVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCT 292 (381)
Q Consensus 213 ~iIvVsEG~~~~~~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~ 292 (381)
+|||||||+. |++||+.. ..+|+++|+++++.+ +|.+.|||+||||+|+++||.+|+
T Consensus 243 ~iIvvaEG~~--------------d~~g~~i~---~~~l~~~l~~~~g~~------~R~~~LGh~QRgg~Psa~Dr~la~ 299 (745)
T TIGR02478 243 NIVIVAEGAI--------------DRDLNPIT---SEDVKDVLVERLGLD------TRITVLGHVQRGGAPSAYDRILAT 299 (745)
T ss_pred EEEEEeCCcc--------------cccCCccc---HHHHHHHHHHhcCCc------eEEeecChhhcCCCCCHHHHHHHH
Confidence 9999999984 34555432 457899998887754 455679999999999999999999
Q ss_pred HHHHHHHHHHHcCCC---ceEEEEeCCccccccHHHHHhhCCCCCCC--hHHHHHHHHhcCCCCCCChHHHhHHhhhhcc
Q 016855 293 LLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIARVTETQKTVKLT--DRMWARLLASTNQPSFLNCSEVLHHQEKAGR 367 (381)
Q Consensus 293 ~lG~~Av~~~~~G~s---g~mv~~~~~~~~~vpl~~~~~~~k~v~~~--~~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~ 367 (381)
+||..||+++++|++ ++||+++++++..+||+++++.+|.++.+ ...|.+.+.. +.++|.++.+.+++++.+..
T Consensus 300 ~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~~~~~a~~~-r~~~f~~~~~~~~~~~~~~~ 378 (745)
T TIGR02478 300 RQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIKEKRFAEAMRL-RGREFVENLATFLFLSIPDQ 378 (745)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHHhccHHHHHHh-cCHHHHHHHHHHHhhhccCC
Confidence 999999999999997 99999999999999999999999999864 4588888888 58999999999999998865
Q ss_pred ccc
Q 016855 368 KTT 370 (381)
Q Consensus 368 ~~~ 370 (381)
.+.
T Consensus 379 ~~~ 381 (745)
T TIGR02478 379 DKK 381 (745)
T ss_pred ccc
Confidence 443
No 14
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=4.9e-79 Score=649.65 Aligned_cols=338 Identities=19% Similarity=0.251 Sum_probs=295.0
Q ss_pred ecccCCCCCcHHHHHhhhc------CCEEEEEccchhhhhcC--CeEeCChhhHhchhhcCCccccccCCCC-----chH
Q 016855 4 ISSVICFCYSLPLFVKHLH------HNSLIEFQGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTN 70 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~------~~~V~G~~~G~~GL~~~--~~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~~ 70 (381)
|-..|++|||||++|+++. +++|||+++||+||+++ ++.+|+|.++++|+++|||+|||||+++ +++
T Consensus 8 IltSGGdapGmNaaIravvr~a~~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~f~~~e~~~ 87 (762)
T cd00764 8 VLTSGGDAQGMNAAVRAVVRMGIYVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKEFREREGRL 87 (762)
T ss_pred EEccCCCchhHhHHHHHHHHHHHHCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCcccCHHHHH
Confidence 4456999999999876433 38999999999999999 7899999999999999999999999864 578
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcHHHHHHHH-------HH----------HHHcCCCceEeeeccccccCccCCCCCCChH
Q 016855 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIY-------KE----------VEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 133 (381)
Q Consensus 71 ~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~-------~~----------~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFd 133 (381)
+++++|++++||+||+|||||||++|+.|. ++ ..+++..++|||||||||||+++||+|||||
T Consensus 88 ~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gTD~TiGfd 167 (762)
T cd00764 88 QAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTD 167 (762)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCCcCCCCHH
Confidence 999999999999999999999999999764 22 2334567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCc
Q 016855 134 TAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGH 212 (381)
Q Consensus 134 TA~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~ 212 (381)
||+++++++||++++||.||+ |+||||||||+|||||+++|||+ +||+|||||.|++.+++.++++.++++++. +++
T Consensus 168 TAl~~i~eaId~i~~tA~Sh~-R~fVVEvMGR~~G~LAl~aglA~-gAd~ilIPE~p~~~~~~~~i~~~l~~~~~~gk~~ 245 (762)
T cd00764 168 SALHRICEVVDAITTTAQSHQ-RTFVLEVMGRHCGYLALVSGLAT-GADWIFIPERPPEDGWEDQMCRRLSEHRSRGKRL 245 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CEEEEEECCCCchHHHHHHHhcc-CCCEEEecCCCCchhHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999995 79999999999999999999999 799999999999943344666666665554 589
Q ss_pred eEEEEecCCCchhhhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHH
Q 016855 213 MVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCT 292 (381)
Q Consensus 213 ~iIvVsEG~~~~~~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~ 292 (381)
+|||||||+. |..|++.. +.+|++.|+++++.+ +|.++|||+||||+|+++||.+|+
T Consensus 246 ~iIVVaEGa~--------------d~~g~~i~---~~~l~~~l~~~~g~d------~R~t~LGh~QRGG~Psa~Dr~la~ 302 (762)
T cd00764 246 NIIIVAEGAI--------------DDQLKPIT---SEDVKDLVVERLGLD------TRVTTLGHVQRGGTPSAFDRILAS 302 (762)
T ss_pred EEEEEeCCCc--------------cccCCCcc---HHHHHHHHHHhcCCC------eeEeecChhhcCCCCCHHHHHHHH
Confidence 9999999985 23344332 357899998887754 455689999999999999999999
Q ss_pred HHHHHHHHHHHcCCC---ceEEEEeCCccccccHHHHHhhCCCCC--CChHHHHHHHHhcCCCCCCChHHHhHHhhhhcc
Q 016855 293 LLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIARVTETQKTVK--LTDRMWARLLASTNQPSFLNCSEVLHHQEKAGR 367 (381)
Q Consensus 293 ~lG~~Av~~~~~G~s---g~mv~~~~~~~~~vpl~~~~~~~k~v~--~~~~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~ 367 (381)
+||..||+++++|.+ ++||++++++++.+||++++..+|.|. .+...|.+.+.. +.++|.++.+.|+.++.+-.
T Consensus 303 ~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~~~~~~~a~~l-r~~~f~~~~~~~~~~~~~~~ 381 (762)
T cd00764 303 LMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMDEKRFDEAAAL-RGKSFDKNWNLYKLLAIELP 381 (762)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhhhhhHHHHHHh-cchhHHHHHHHHHhccccCC
Confidence 999999999999986 899999999999999999999999885 456789999988 58999999999998887643
No 15
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-78 Score=596.20 Aligned_cols=299 Identities=30% Similarity=0.426 Sum_probs=260.8
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCCC-----chHHH
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNKI 72 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~~~i 72 (381)
|-..|++|||||++|+++.. ++|||+++||+||+++++++|++.+++.++++|||+|||+|+++ .++++
T Consensus 7 IlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~~e~~~~~ 86 (347)
T COG0205 7 ILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKTEEGRKVA 86 (347)
T ss_pred EEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCcccHHHHHHH
Confidence 44569999999999998766 89999999999999999999999999999999999999999863 47899
Q ss_pred HHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 016855 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 152 (381)
Q Consensus 73 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S 152 (381)
+++|++++||+||+||||||+++|+.|++++ +++|||||||||||+++||+|||||||+++++++|+++++|++|
T Consensus 87 ~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~l~dtass 161 (347)
T COG0205 87 AENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTASS 161 (347)
T ss_pred HHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999874 37799999999999999999999999999999999999999999
Q ss_pred cCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHH-h-CCceEEEEecCCCchhhhccC
Q 016855 153 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLK-E-NGHMVIVVAEGAGQEFVAQSM 230 (381)
Q Consensus 153 ~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~-~-~~~~iIvVsEG~~~~~~~~~~ 230 (381)
| +|+||||||||+||||||+||||+ +||+|+|||.+|++ ...+++..++++.+ + ++|++|+|+||+.....
T Consensus 162 h-~r~~iveVMGR~aG~lAl~aglA~-~a~~ilipE~~~~~-~i~~~~~~i~~~~~~~gk~~~iIvvaEG~~~~~~---- 234 (347)
T COG0205 162 H-ERIFIVEVMGRHAGWLALAAGLAT-GADIILIPEEPADL-IIEELIAEIKAKREARGKKHAIIVVAEGAIDQIG---- 234 (347)
T ss_pred c-CCEEEEEecCcChhHHHHHHHHhc-CCCEEEecCccccc-hHHHHHHHHHHHHHHhCCCceEEEEccccccccc----
Confidence 8 579999999999999999999999 79999999999987 11267777777544 3 58999999999965321
Q ss_pred CccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceE
Q 016855 231 PAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFT 310 (381)
Q Consensus 231 ~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~m 310 (381)
.+|+..+. .+++++... . ..+|...|||+||||+|++|||.||++||..||+++++|++|+|
T Consensus 235 -------~~~~~~~~--------~i~~~~~~~-~--~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~~g~~~~~ 296 (347)
T COG0205 235 -------ENGAELLA--------AIEELLALG-D--FETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLLEGKTGYM 296 (347)
T ss_pred -------cchhhHHH--------HHHHHhhhc-c--cceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHHcCCCCce
Confidence 13443333 333333211 0 24667789999999999999999999999999999999999999
Q ss_pred EEEeCCccccccHHHHHhhCCC
Q 016855 311 VGPVNSRHAYIPIARVTETQKT 332 (381)
Q Consensus 311 v~~~~~~~~~vpl~~~~~~~k~ 332 (381)
|++++++++..|+.+.....+.
T Consensus 297 v~i~~~~~v~~~~~~~~~~~~~ 318 (347)
T COG0205 297 VGIRNNKIVHVPIDEAVAPLKM 318 (347)
T ss_pred EEEeCCeeEeehhHhhhhhhhh
Confidence 9999999999999988776554
No 16
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=7.9e-76 Score=607.40 Aligned_cols=325 Identities=24% Similarity=0.335 Sum_probs=279.7
Q ss_pred cccCCCCCcHHHHHhhhc--------CCEEEEEccchhhhhcCCeEeCChhhHhchhhcCCc-cccccCCC----CchHH
Q 016855 5 SSVICFCYSLPLFVKHLH--------HNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNK 71 (381)
Q Consensus 5 ~~~~~~~pg~~~vi~gl~--------~~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt-~LGtsR~~----~~~~~ 71 (381)
-..|++|||+||||+|+. +++||||++||+||+++++++|+++.++.|+++||+ +|||||++ +++++
T Consensus 73 l~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~ 152 (539)
T TIGR02477 73 ILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAK 152 (539)
T ss_pred ECCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHH
Confidence 346999999999999984 379999999999999999999999999999999996 99999985 36899
Q ss_pred HHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCcc--CCCCCCChHHHHHHHHHHHHHHHHh
Q 016855 72 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVE 149 (381)
Q Consensus 72 i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~--~tD~tiGFdTA~~~~~~ai~~l~~t 149 (381)
++++|++++||+||+||||||+++|++|++++.++|.+++|||||||||||++ +||+|||||||+++++++|+++..+
T Consensus 153 ~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~~I~~i~~D 232 (539)
T TIGR02477 153 ALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRD 232 (539)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 5999999999999999999999777
Q ss_pred hhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCC----CCCC-hhhHHHHHHHHHHh-CCceEEEEecCCCc
Q 016855 150 VESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPF----YLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQ 223 (381)
Q Consensus 150 A~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~----~~~~-~~~~~~~I~~~~~~-~~~~iIvVsEG~~~ 223 (381)
+.|+++||||||+|||+|||||++||||+ +||+|||||+++ +++. ...+++.|++|+.+ ++|++||||||+..
T Consensus 233 a~s~~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie 311 (539)
T TIGR02477 233 ALSAKKYWHFIRLMGRSASHIALECALQT-HPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEGLIE 311 (539)
T ss_pred HHhcCCcEEEEEECCCCcHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCchh
Confidence 77777889999999999999999999999 899999999987 4331 23466677777766 68999999999854
Q ss_pred hh--------------------------hhccCCc-----------------cccccccCCccchhh--HHHHHHHHHhh
Q 016855 224 EF--------------------------VAQSMPA-----------------VDEKDASGNRLLLDI--GLWLTQKIKDH 258 (381)
Q Consensus 224 ~~--------------------------~~~~~~~-----------------~~~~D~~G~~~l~~i--~~~l~~~i~~~ 258 (381)
.. +...+++ ...+|++||++++++ ++.|+++|+++
T Consensus 312 ~ipe~~~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~lL~~lV~~~ 391 (539)
T TIGR02477 312 FIPEVQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTE 391 (539)
T ss_pred hcchHHHHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHHHHHHHHHH
Confidence 11 1001111 124899999999988 88999999888
Q ss_pred hccccc-eeeeeeEe----CCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCC--c-----cccccHHHH
Q 016855 259 FTKVQK-MMINMKYI----DPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS--R-----HAYIPIARV 326 (381)
Q Consensus 259 ~~~~~r-~~~~~r~~----~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~~~~~--~-----~~~vpl~~~ 326 (381)
++.... ..+..++. .+||.|||+.||.||+.||+.||..|++++++|.||+|+++++- . +..+||.++
T Consensus 392 l~~~~~~~~~k~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~~ 471 (539)
T TIGR02477 392 LNKRKKEGEYKGKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMM 471 (539)
T ss_pred HHhhhccccceeEEeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHHHH
Confidence 763211 11344555 57999999999999999999999999999999999999999972 2 367999999
Q ss_pred HhhC
Q 016855 327 TETQ 330 (381)
Q Consensus 327 ~~~~ 330 (381)
++..
T Consensus 472 ~n~e 475 (539)
T TIGR02477 472 MNME 475 (539)
T ss_pred hChh
Confidence 8754
No 17
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=2.4e-75 Score=623.80 Aligned_cols=317 Identities=20% Similarity=0.262 Sum_probs=275.7
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCC--CchHHHHHH
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG--HDTNKIVDN 75 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~--~~~~~i~~~ 75 (381)
|-..|++|||||++|+++.. ++|||+++||+||+++++.+|+|.++++|+++|||+|||||+. +++++++++
T Consensus 394 IltsGG~apGmNaair~vv~~a~~~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~i~~~ 473 (745)
T TIGR02478 394 IIHVGAPAGGMNAATRSAVRYAIARGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSELGTNRELPGKDLGMIAYY 473 (745)
T ss_pred EEecCCCchhHHHHHHHHHHHHHhCCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCcccccCCCCchhHHHHHHHH
Confidence 45689999999999986653 8999999999999999999999999999999999999999985 479999999
Q ss_pred HHHcCCcEEEEEcCCCcHHHHHHHHHHHHHc-CCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhcC
Q 016855 76 IEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVE 154 (381)
Q Consensus 76 l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~-g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~~ 154 (381)
|++++||+||+||||||+++|++|+++..++ ++.++||||||||||||++||+|||||||++++++++|+++++|.||+
T Consensus 474 l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~~~~~~id~i~~ta~s~~ 553 (745)
T TIGR02478 474 FQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEITEYCDNIKQSASASK 553 (745)
T ss_pred HHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHHHHHHHHHHHHHhhHhcC
Confidence 9999999999999999999999999874433 256889999999999999999999999999999999999999999987
Q ss_pred cceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhC--CceEEEEecCCCchhhhccCCc
Q 016855 155 NGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN--GHMVIVVAEGAGQEFVAQSMPA 232 (381)
Q Consensus 155 ~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~--~~~iIvVsEG~~~~~~~~~~~~ 232 (381)
+||||||||||+|||||+++|||+ +||+|||||.||+++...+.++.++++++.+ ++.+|+++||+...+
T Consensus 554 ~rv~iVEvMGR~~G~LAl~~alA~-gad~iliPE~~~~~~~l~~~v~~i~~~~~~~~~~~~iiv~~Eg~~~~~------- 625 (745)
T TIGR02478 554 RRVFVVETMGGYSGYLATMAGLAT-GADAAYIPEEGISLKDLQEDIEHLKEKFAHGNRAGKLILRNENASKNY------- 625 (745)
T ss_pred CcEEEEEecCccccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCccCC-------
Confidence 789999999999999999999999 8999999999999983223334667777663 688999999974321
Q ss_pred cccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC-------
Q 016855 233 VDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG------- 305 (381)
Q Consensus 233 ~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G------- 305 (381)
....|++.++++... . +.+|+++|||+||||.|+++||.+|++||..||+++.+|
T Consensus 626 --------------~~~~l~~~i~~e~~~--~--~~~R~~~LG~~QRgg~ps~~Dr~~a~~lG~~Av~~~~~~~~~~~~~ 687 (745)
T TIGR02478 626 --------------TTDFIARIISEEAKG--R--FDARTAVLGHMQQGGSPSPFDRNRATRLAIRAVDFIEEKIKKSADK 687 (745)
T ss_pred --------------CHHHHHHHHHHHhcC--C--CceEeccCCccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 134678888755321 1 357888999999999999999999999999999999998
Q ss_pred -----CCceEEEEeCCccccccHHHHHhhC---CCCCCChHHHHHHHHh
Q 016855 306 -----FTGFTVGPVNSRHAYIPIARVTETQ---KTVKLTDRMWARLLAS 346 (381)
Q Consensus 306 -----~sg~mv~~~~~~~~~vpl~~~~~~~---k~v~~~~~~~~~~l~~ 346 (381)
++++||++++++++++||+++.+.. ++..|+.+||.++...
T Consensus 688 ~~~~~~~~~~vg~~~~~~~~~p~~~~~~~~~d~~~r~p~~~~w~~~~~~ 736 (745)
T TIGR02478 688 LGADDTSAVVIGIRGSNVLFTPVKGLLAKETDFEHRRPKNQWWLDLRPL 736 (745)
T ss_pred cccCCCccEEEEEECCEEEEEEHHHHHhhccCcccCCCCCchhhhHHHH
Confidence 7999999999999999999865443 3455888899876543
No 18
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=7.6e-75 Score=601.19 Aligned_cols=326 Identities=22% Similarity=0.317 Sum_probs=278.6
Q ss_pred ecccCCCCCcHHHHHhhhc--------CCEEEEEccchhhhhcCCeEeCChhhHhchhhcCCc-cccccCCC----CchH
Q 016855 4 ISSVICFCYSLPLFVKHLH--------HNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTN 70 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~--------~~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt-~LGtsR~~----~~~~ 70 (381)
|-..|++|||+||||+|+. +++||||++||+||+++++++|+++.++.|+++||+ +|||||++ ++++
T Consensus 75 Il~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~ 154 (555)
T PRK07085 75 VILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKE 154 (555)
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHH
Confidence 3456999999999999984 289999999999999999999999999999999998 99999985 3689
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC--CCCCChHHHHHHHHHHHHHHHH
Q 016855 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAHV 148 (381)
Q Consensus 71 ~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t--D~tiGFdTA~~~~~~ai~~l~~ 148 (381)
+++++|++++||+||+||||||+++|+.|++++.+++.+++|||||||||||++++ |+|||||||+++++++|+++..
T Consensus 155 ~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~~i~~ 234 (555)
T PRK07085 155 ACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISR 234 (555)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999955 9999999999999999999988
Q ss_pred hhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCC----CCCCC-hhhHHHHHHHHHHh-CCceEEEEecCCC
Q 016855 149 EVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP----FYLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAG 222 (381)
Q Consensus 149 tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~----~~~~~-~~~~~~~I~~~~~~-~~~~iIvVsEG~~ 222 (381)
+|.|+++||||||+|||+|||||++||||+ +||+|||||++ ++++. ...+++.|++|..+ ++|++||||||+.
T Consensus 235 Da~s~~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGli 313 (555)
T PRK07085 235 DALSAKKYWHFIKLMGRSASHIALECALQT-HPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPEGLI 313 (555)
T ss_pred HHHhcCCcEEEEEECCCChHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCch
Confidence 888877789999999999999999999999 89999999994 44432 12344555666655 6899999999986
Q ss_pred chhhh--------------------------------ccCCc-----------------cccccccCCccchhh--HHHH
Q 016855 223 QEFVA--------------------------------QSMPA-----------------VDEKDASGNRLLLDI--GLWL 251 (381)
Q Consensus 223 ~~~~~--------------------------------~~~~~-----------------~~~~D~~G~~~l~~i--~~~l 251 (381)
+.... ..++. ...+|+|||++++++ ++.|
T Consensus 314 e~ipe~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te~lL 393 (555)
T PRK07085 314 EFIPEMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLL 393 (555)
T ss_pred hcCchHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeeccccHHHHH
Confidence 41110 00111 124899999999988 8899
Q ss_pred HHHHHhhhccccc-----eeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCC--cc-----c
Q 016855 252 TQKIKDHFTKVQK-----MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS--RH-----A 319 (381)
Q Consensus 252 ~~~i~~~~~~~~r-----~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~~~~~--~~-----~ 319 (381)
+++|+++++.... ..+..+...+||.|||+.||.||+.||+.||..|++++++|.||+|+++++- .. .
T Consensus 394 ~~lV~~~l~~~k~~g~y~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~ 473 (555)
T PRK07085 394 IEMVKKELEKLKPEGKYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAG 473 (555)
T ss_pred HHHHHHHHHHhhcccccccceeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEe
Confidence 9999988764111 1233455569999999999999999999999999999999999999999982 23 6
Q ss_pred cccHHHHHhhC
Q 016855 320 YIPIARVTETQ 330 (381)
Q Consensus 320 ~vpl~~~~~~~ 330 (381)
.+||..+++..
T Consensus 474 ~vPl~~~~n~e 484 (555)
T PRK07085 474 AVPLTMMMNME 484 (555)
T ss_pred cccHHHHhcHH
Confidence 79999998755
No 19
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=7.6e-75 Score=599.32 Aligned_cols=328 Identities=23% Similarity=0.298 Sum_probs=281.9
Q ss_pred ecccCCCCCcHHHHHhhhc--------CCEEEEEccchhhhhcCCeEeCChhhHhchhhcCCc-cccccCCC----CchH
Q 016855 4 ISSVICFCYSLPLFVKHLH--------HNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTN 70 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~--------~~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt-~LGtsR~~----~~~~ 70 (381)
|-..|++|||+||+++|+. +++||||++||+||+++++++|+++.++.|+++||+ +|||||++ ++++
T Consensus 77 Il~SGG~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~ 156 (550)
T cd00765 77 IVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFK 156 (550)
T ss_pred EECCCCCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHH
Confidence 4456999999999999887 379999999999999999999999999999999999 99999985 3689
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC--CCCCChHHHHHHHHHHHHHHHH
Q 016855 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAHV 148 (381)
Q Consensus 71 ~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t--D~tiGFdTA~~~~~~ai~~l~~ 148 (381)
+++++|++++||+||+|||||||++|++|++++.++|++++|||||||||||+++| |+|||||||+++++++|++++.
T Consensus 157 ~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~ 236 (550)
T cd00765 157 QAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMR 236 (550)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999985 9999999999999999999998
Q ss_pred hhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCC----CCCC-hhhHHHHHHHHHHh-CCceEEEEecCCC
Q 016855 149 EVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPF----YLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAG 222 (381)
Q Consensus 149 tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~----~~~~-~~~~~~~I~~~~~~-~~~~iIvVsEG~~ 222 (381)
|+.|+++||+|||+|||+|||||++||||+ +||+|||||+++ ++++ ...+++.|++|..+ ++|++||||||+.
T Consensus 237 Da~s~~~~~~~VEvMGR~aG~LAl~~aLat-~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsEGli 315 (550)
T cd00765 237 DARSTGKYWHFVKLMGRSASHIALECALKT-HPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLI 315 (550)
T ss_pred HHHHcCCcEEEEEeCCCchHHHHHHHHHhc-CCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCch
Confidence 888887899999999999999999999999 899999999998 3321 12455666666655 6899999999987
Q ss_pred chhhh------------------------------------------------ccCC--ccccccccCCccchhh--HHH
Q 016855 223 QEFVA------------------------------------------------QSMP--AVDEKDASGNRLLLDI--GLW 250 (381)
Q Consensus 223 ~~~~~------------------------------------------------~~~~--~~~~~D~~G~~~l~~i--~~~ 250 (381)
+...+ +.++ ....+|+|||++++++ ++.
T Consensus 316 e~ipe~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iete~l 395 (550)
T cd00765 316 EFIPEVKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKL 395 (550)
T ss_pred hhCchHHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeeccchHHHH
Confidence 62111 0010 0225899999999988 999
Q ss_pred HHHHHHhhhcc-ccc----eeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------cc
Q 016855 251 LTQKIKDHFTK-VQK----MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RH 318 (381)
Q Consensus 251 l~~~i~~~~~~-~~r----~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~~~~~-------~~ 318 (381)
|+++|+++++. +.+ ..+......+||.|||+.||.||+.||+.+|..|++++.+|.||+|+++++- ++
T Consensus 396 L~~lV~~~L~~~k~~g~y~~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~l~~~~~~w~~ 475 (550)
T cd00765 396 LIQMVETRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTV 475 (550)
T ss_pred HHHHHHHHHHHhhhcccccccccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEE
Confidence 99999998874 222 0112223458999999999999999999999999999999999999999872 24
Q ss_pred ccccHHHHHhhCCC
Q 016855 319 AYIPIARVTETQKT 332 (381)
Q Consensus 319 ~~vpl~~~~~~~k~ 332 (381)
..+||..+++.+|.
T Consensus 476 ~~vPl~~~mn~e~~ 489 (550)
T cd00765 476 GGVPLTMLMNMERR 489 (550)
T ss_pred ecccHHHHhccccc
Confidence 67999999986653
No 20
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=8e-74 Score=592.87 Aligned_cols=325 Identities=20% Similarity=0.248 Sum_probs=279.3
Q ss_pred ccCCCCCcHHHHHhhhcC--------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCc-cccccCCC----CchHHH
Q 016855 6 SVICFCYSLPLFVKHLHH--------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKI 72 (381)
Q Consensus 6 ~~~~~~pg~~~vi~gl~~--------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt-~LGtsR~~----~~~~~i 72 (381)
..|++|||+||||+|+.. ++||||++||+||+++++++|++..++.|+++||+ +|||+|++ ++++++
T Consensus 103 ~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~~~ 182 (568)
T PLN02251 103 LSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQA 182 (568)
T ss_pred CcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHHHH
Confidence 459999999999998875 79999999999999999999999999999999999 99999985 468999
Q ss_pred HHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC--CCCChHHHHHHHHHHHHHHHHhh
Q 016855 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINAAHVEV 150 (381)
Q Consensus 73 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD--~tiGFdTA~~~~~~ai~~l~~tA 150 (381)
+++|++++||+||+||||||+++|+.|++++.++|.+++|||||||||||+++|| +|||||||+++++++|++++.||
T Consensus 183 ~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~da 262 (568)
T PLN02251 183 EETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDA 262 (568)
T ss_pred HHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 69999999999999999999999
Q ss_pred hhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC-h----hhHHHHHHHHHHh-CCceEEEEecCCCch
Q 016855 151 ESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-P----GGLFEFIERQLKE-NGHMVIVVAEGAGQE 224 (381)
Q Consensus 151 ~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~-~----~~~~~~I~~~~~~-~~~~iIvVsEG~~~~ 224 (381)
.||+++|+|||+|||+|||||++||||+ +||+|||||++++.+. + ..+++.|++|..+ ++|+|||||||+...
T Consensus 263 ~S~~k~~~~VevMGR~aG~LAL~~aLat-~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGlie~ 341 (568)
T PLN02251 263 RSTGKYYHFVRLMGRAASHITLECALQT-HPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLIDF 341 (568)
T ss_pred HhhCCEEEEEEeCCCchHHHHHHHHHhh-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhh
Confidence 9998778899999999999999999999 8999999999554321 1 2455667777665 689999999998321
Q ss_pred hh------hc------------------cCC-----------------ccccccccCCccchh--hHHHHHHHHHhhhcc
Q 016855 225 FV------AQ------------------SMP-----------------AVDEKDASGNRLLLD--IGLWLTQKIKDHFTK 261 (381)
Q Consensus 225 ~~------~~------------------~~~-----------------~~~~~D~~G~~~l~~--i~~~l~~~i~~~~~~ 261 (381)
.. .+ .++ ....+|+|||+++++ .++.|+++|+++++.
T Consensus 342 ipe~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L~~ 421 (568)
T PLN02251 342 IPEVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELEK 421 (568)
T ss_pred CchHHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHHhh
Confidence 11 00 010 123489999999997 778999999888764
Q ss_pred ccc-----eeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------ccccccHHHHHhh
Q 016855 262 VQK-----MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIARVTET 329 (381)
Q Consensus 262 ~~r-----~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~~~~~-------~~~~vpl~~~~~~ 329 (381)
... ..+..+...+||.|||+.||.||+.||+.||..|++++.+|.||+|+++++- +...+||..+++.
T Consensus 422 rk~~~~~~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~mn~ 501 (568)
T PLN02251 422 RKQEGSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLMDV 501 (568)
T ss_pred hccccccccccceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHHhhh
Confidence 211 1123444568999999999999999999999999999999999999999973 1457999999885
Q ss_pred CC
Q 016855 330 QK 331 (381)
Q Consensus 330 ~k 331 (381)
+|
T Consensus 502 e~ 503 (568)
T PLN02251 502 ER 503 (568)
T ss_pred hh
Confidence 43
No 21
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=8.8e-75 Score=560.47 Aligned_cols=265 Identities=32% Similarity=0.465 Sum_probs=233.4
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCCC-----chHHH
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNKI 72 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~~~i 72 (381)
|-..|++|||||++++++.. ++|||+++||+||+++++++|++++++.|.++|||+|||||+++ +.+++
T Consensus 5 Il~sGG~apG~Na~i~~~v~~a~~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~~~~~~~ 84 (282)
T PF00365_consen 5 ILTSGGDAPGMNAAIRGVVRYAIRRGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDPEGRKKI 84 (282)
T ss_dssp EEEESS--TTHHHHHHHHHHHHHHTTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSHHHHHHH
T ss_pred EEecCCCchhhhHHHHHHHHHHHhcCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccchhhhhhH
Confidence 45679999999999997765 89999999999999999999999999999999999999999852 46789
Q ss_pred HHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 016855 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 152 (381)
Q Consensus 73 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S 152 (381)
+++|++++||+||+|||||||++|++|++++. ++|||||||||||+++||+|||||||+++++++++++++||.|
T Consensus 85 ~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd~siGf~TA~~~~~~~i~~i~~~a~s 159 (282)
T PF00365_consen 85 VENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTDYSIGFDTAVNYIAEAIDNIKTTARS 159 (282)
T ss_dssp HHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSSS-BTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCCCCcccCchhHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999997652 7899999999999999999999999999999999999999999
Q ss_pred cCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCceEEEEecCCCchhhhccCC
Q 016855 153 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEFVAQSMP 231 (381)
Q Consensus 153 ~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~~iIvVsEG~~~~~~~~~~~ 231 (381)
| +||||||+|||+|||||+++|||+ +||+|||||.|++++ ++++.|++++++ ++|++||||||+...
T Consensus 160 ~-~rv~ivEvmGr~~G~LAl~~ala~-~a~~ilipE~~~~~~---~~~~~i~~~~~~~k~~~iVvvsEG~~~~------- 227 (282)
T PF00365_consen 160 H-NRVFIVEVMGRNAGWLALAAALAT-GADLILIPEEPFDLD---ELLDDIKKRYERGKRYGIVVVSEGAKDG------- 227 (282)
T ss_dssp S-TEEEEEEESSTTSTHHHHHHHHHH-TSSEEEBTTSHHHHH---HHHHHHHHHHHTTSSEEEEEEETTSBSS-------
T ss_pred c-CCceEEEeCCCCcCHHHHHHHhcc-CCCEEEEeccccchH---HHHHHhhhhhcccCceEEEEeccccccc-------
Confidence 8 579999999999999999999999 799999999999887 899999999887 578999999999631
Q ss_pred ccccccccCCccchhh-HHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 016855 232 AVDEKDASGNRLLLDI-GLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMA 304 (381)
Q Consensus 232 ~~~~~D~~G~~~l~~i-~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~ 304 (381)
.++ .+.+.+..++.++ +.+|+..|||+||||+|+++||++|++||.+||+++.+
T Consensus 228 -------------~~i~~~~~~~~~~~~~~------~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 228 -------------QPISSEFIKELLEEGLG------FDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp -------------HBHHHHHHHHHHHHTTT------SEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------ccccccccccccccccc------cceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 111 2344444444444 35777889999999999999999999999999999875
No 22
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=2.8e-73 Score=592.83 Aligned_cols=324 Identities=20% Similarity=0.289 Sum_probs=278.2
Q ss_pred cccCCCCCcHHHHHhhhcC--------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCc-cccccCCC----CchHH
Q 016855 5 SSVICFCYSLPLFVKHLHH--------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNK 71 (381)
Q Consensus 5 ~~~~~~~pg~~~vi~gl~~--------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt-~LGtsR~~----~~~~~ 71 (381)
-..|++|||+||||+|+.. ++||||++||+||+++++++|+++.++.|+++||+ +|||+|.+ +++++
T Consensus 85 v~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~~~~ 164 (610)
T PLN03028 85 VFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNA 164 (610)
T ss_pred EccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHHHHHH
Confidence 3469999999999999854 79999999999999999999999999999999998 89999964 36899
Q ss_pred HHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCcc--CCCCCCChHHHHHHHHHHHHHHHHh
Q 016855 72 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVE 149 (381)
Q Consensus 72 i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~--~tD~tiGFdTA~~~~~~ai~~l~~t 149 (381)
++++|++++||+||+||||||+++|++|++++.+++.+++|||||||||||++ +||+|||||||+++++++|++++.|
T Consensus 165 i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~~ae~I~ni~~d 244 (610)
T PLN03028 165 ALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 244 (610)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999998 8999999999999999999999999
Q ss_pred hhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCC-CCC---CC-hhhHHHHHHHHHHh-CCceEEEEecCCCc
Q 016855 150 VESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP-FYL---EG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQ 223 (381)
Q Consensus 150 A~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~-~~~---~~-~~~~~~~I~~~~~~-~~~~iIvVsEG~~~ 223 (381)
|.||++||||||+|||+|||||++||||+ +||+|||||+. ++. .. ..++++.|++|+++ ++|+|||||||+.+
T Consensus 245 A~S~~~~~~~VevMGR~aG~LAl~~aLat-~pniilI~EE~~~~~~tL~~iv~~i~~~I~~r~~~gk~~gvIvVsEGlie 323 (610)
T PLN03028 245 ALSAEKYYYFIRLMGRKASHVALECALQS-HPNMVILGEEVAASKLTLFDITKQICDAVQARAEQDKNHGVILIPEGLIE 323 (610)
T ss_pred HHhhCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcccccccccchHHHHHHHHHHHHHHcCCCcEEEEEeCCccc
Confidence 99997789999999999999999999999 89999999964 322 21 23788889999865 68999999999875
Q ss_pred hhhh----------------------ccC-----------------CccccccccCCccchh--hHHHHHHHHHhhhccc
Q 016855 224 EFVA----------------------QSM-----------------PAVDEKDASGNRLLLD--IGLWLTQKIKDHFTKV 262 (381)
Q Consensus 224 ~~~~----------------------~~~-----------------~~~~~~D~~G~~~l~~--i~~~l~~~i~~~~~~~ 262 (381)
.... ..+ +....+|+|||+++++ .++.|+++++++++.+
T Consensus 324 ~ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~D~~G~~qls~i~te~lL~~lV~~eL~~r 403 (610)
T PLN03028 324 SIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEMNKR 403 (610)
T ss_pred cCchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhccCCCCCeeecchhHHHHHHHHHHHHHHHH
Confidence 4211 000 0113489999999997 6688999998887643
Q ss_pred cce------eeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------ccccccHHHHHhh
Q 016855 263 QKM------MINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIARVTET 329 (381)
Q Consensus 263 ~r~------~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~~~~~-------~~~~vpl~~~~~~ 329 (381)
.+. .+....-.+||.|||+.||.||+.||+.+|..|++++.+|.||+|+++++- ++..+||..+++.
T Consensus 404 ~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG~M~~I~nl~~~~~~w~~~~vPl~~~m~~ 483 (610)
T PLN03028 404 TKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAMMSV 483 (610)
T ss_pred hhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCeEEEEcccCHHHHhhH
Confidence 221 111111248999999999999999999999999999999999999999872 2457999998753
No 23
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=2.1e-72 Score=598.81 Aligned_cols=313 Identities=19% Similarity=0.191 Sum_probs=266.4
Q ss_pred ecccCCCCCcHHHHHhhhc------CCEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCC--CchHHHHHH
Q 016855 4 ISSVICFCYSLPLFVKHLH------HNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG--HDTNKIVDN 75 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~------~~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~--~~~~~i~~~ 75 (381)
|-.+|++|||||++|+++. +++|||+++||+||+++++++|+|.++++|+++|||+|||+|++ +++++++++
T Consensus 394 IltsGG~apGmNaairavv~~a~~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT~R~~~~~~~~~i~~~ 473 (762)
T cd00764 394 IVNVGAPAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGTKRTLPKKDLETIAYN 473 (762)
T ss_pred EEecCCCchhHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccccCCCcHHHHHHHHHH
Confidence 5578999999999988553 38999999999999999999999999999999999999999985 479999999
Q ss_pred HHHcCCcEEEEEcCCCcHHHHHHHHHHHHHc-CCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhcC
Q 016855 76 IEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVE 154 (381)
Q Consensus 76 l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~-g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~~ 154 (381)
|++++||+||+||||||+++|++|++++.++ .+.|+|||||||||||+++||+|||||||+|++++++|++++||.||+
T Consensus 474 l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~~~~~id~i~~tA~s~~ 553 (762)
T cd00764 474 FQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDRIKQSASGTK 553 (762)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999876443 245889999999999999999999999999999999999999999987
Q ss_pred cceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHH----h-CCceEEEEecCCCchhhhcc
Q 016855 155 NGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLK----E-NGHMVIVVAEGAGQEFVAQS 229 (381)
Q Consensus 155 ~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~----~-~~~~iIvVsEG~~~~~~~~~ 229 (381)
+||||||||||+|||||+++|||+ +||+|||||.||+++...+.++.+.++++ + +.+.++++|||+...
T Consensus 554 ~RvfVVEvMGR~~G~LA~~aglA~-GAd~i~iPE~~~~~~~l~~dv~~l~~~~~~~~~~g~~~~~~~~se~~~~~----- 627 (762)
T cd00764 554 RRVFIVETMGGYCGYLATMTGLAV-GADAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLVLRNEKCNENYTTV----- 627 (762)
T ss_pred CeEEEEEeCCCCccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEeeeeeecCCccc-----
Confidence 789999999999999999999999 89999999999999832222233333333 2 346788999997321
Q ss_pred CCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC----
Q 016855 230 MPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG---- 305 (381)
Q Consensus 230 ~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G---- 305 (381)
.+++.+++++++. +.+|..+|||+||||.||++||.+|++||.+||+++.+.
T Consensus 628 ----------------~~~~~~~~~~~~~--------~~~R~~vLGh~QrGG~Ps~~DR~latr~g~~Av~~l~~~~~~~ 683 (762)
T cd00764 628 ----------------FTYELYSEEGKGV--------FDCRTNVLGHVQQGGAPSPFDRNFGTKFAVKAMKWIEQKLKEN 683 (762)
T ss_pred ----------------cHHHHHHHHHhcC--------CceEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1233455555441 357788999999999999999999999999999999884
Q ss_pred -----------CCceEEEEeCCccccccHHHHHhhC-CCCCCChHHHHHHHHh
Q 016855 306 -----------FTGFTVGPVNSRHAYIPIARVTETQ-KTVKLTDRMWARLLAS 346 (381)
Q Consensus 306 -----------~sg~mv~~~~~~~~~vpl~~~~~~~-k~v~~~~~~~~~~l~~ 346 (381)
.+.+++|++++++.+.|+.++.... ++..|+.+||..+...
T Consensus 684 ~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~r~p~~~~w~~~~~~ 736 (762)
T cd00764 684 YAAGNEFANDPDFNCVNGVKKYAVLFEPVEELKQTTFEHRIPKEQWWLSLRPL 736 (762)
T ss_pred hcccccccCCCCceEEEEEeCCEEEEeeHHHHHHhhhhcCCCcchhhHhHHHH
Confidence 3789999999999999999987743 3455788899765443
No 24
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=5.8e-71 Score=601.50 Aligned_cols=322 Identities=23% Similarity=0.296 Sum_probs=276.8
Q ss_pred ccCCCCCcHHHHHhhhcC--------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCc-cccccCCC----CchHHH
Q 016855 6 SVICFCYSLPLFVKHLHH--------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKI 72 (381)
Q Consensus 6 ~~~~~~pg~~~vi~gl~~--------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt-~LGtsR~~----~~~~~i 72 (381)
..|++|||+||||+|+.. ++||||++||+||+++++++|++..++.|+++||| +|||+|++ ++++++
T Consensus 109 tSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee~~~~~ 188 (1328)
T PTZ00468 109 LSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQMRAS 188 (1328)
T ss_pred CcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCCHHHHHHH
Confidence 459999999999988774 79999999999999999999999999999999997 99999975 368999
Q ss_pred HHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccC--CCCCCChHHHHHHHHHHHHHHHHhh
Q 016855 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEV 150 (381)
Q Consensus 73 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~--tD~tiGFdTA~~~~~~ai~~l~~tA 150 (381)
+++|++++||+||+||||||+++|++|++++.++|.+++|||||||||||+++ ||+|||||||+++++++|++++.+|
T Consensus 189 le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I~nl~~~A 268 (1328)
T PTZ00468 189 LEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAI 268 (1328)
T ss_pred HHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999985 8999999999999999999999999
Q ss_pred hhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC-----hhhHHHHHHHHHHh-CCceEEEEecCCCch
Q 016855 151 ESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-----PGGLFEFIERQLKE-NGHMVIVVAEGAGQE 224 (381)
Q Consensus 151 ~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~-----~~~~~~~I~~~~~~-~~~~iIvVsEG~~~~ 224 (381)
.|.++||||||+|||+|||||+++|||+ +||+|||||++++.+. ...+++.|.+|++. ++|+|||||||+.+.
T Consensus 269 ~S~~~rv~~VEVMGR~AGhLAL~~ALAt-ganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvVsEGlief 347 (1328)
T PTZ00468 269 KTEGYGYYFVRLMGRSASHITLECGLQT-RANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGLIEF 347 (1328)
T ss_pred hhcCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEEcCCcccc
Confidence 9866789999999999999999999999 8999999999987321 22455666666655 589999999998631
Q ss_pred hh----------------------hc-----------cC----C--ccccccccCCccchhhH--HHHHHHHHhhhcccc
Q 016855 225 FV----------------------AQ-----------SM----P--AVDEKDASGNRLLLDIG--LWLTQKIKDHFTKVQ 263 (381)
Q Consensus 225 ~~----------------------~~-----------~~----~--~~~~~D~~G~~~l~~i~--~~l~~~i~~~~~~~~ 263 (381)
.. .. .+ + ....+|+|||+++++++ +.|+++|++++....
T Consensus 348 Ipe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~~~L~~~~ 427 (1328)
T PTZ00468 348 IPEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAKEKLEEVK 427 (1328)
T ss_pred ccHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHHHHHHHHHHhh
Confidence 10 00 00 0 11358999999999877 899999988873211
Q ss_pred ----ceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCCc-------cccccHHHHHhhC
Q 016855 264 ----KMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSR-------HAYIPIARVTETQ 330 (381)
Q Consensus 264 ----r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~~~~~~-------~~~vpl~~~~~~~ 330 (381)
+..+..| .+||.|||+.|+.||+.||+.||..|++++.+|.||+|+++++.+ +..+||..+++.+
T Consensus 428 ~~~~~f~~k~H--flGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~mmn~E 503 (1328)
T PTZ00468 428 KDYILDNVKTH--YFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMMNIE 503 (1328)
T ss_pred cccccCCceEe--ecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEccccHHHHhhHH
Confidence 1123344 589999999999999999999999999999999999999999742 4579999998753
No 25
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=8.6e-69 Score=588.04 Aligned_cols=325 Identities=25% Similarity=0.318 Sum_probs=273.4
Q ss_pred ecccCCCCCcHHHHHhhhcC--------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCc-cccccCCC----CchH
Q 016855 4 ISSVICFCYSLPLFVKHLHH--------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTN 70 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~--------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt-~LGtsR~~----~~~~ 70 (381)
|-.+|++|||+|++|+|+.. ++||||++||+||+++++++|+|..++.|+++||+ +|||+|.+ ++++
T Consensus 182 Il~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~~~e~~~ 261 (1419)
T PTZ00287 182 IILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVRNKDDLI 261 (1419)
T ss_pred EEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCCCHHHHH
Confidence 34569999999999996654 79999999999999999999999999999999997 89999975 3689
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCcc--CCCCCCChHHHHHHHHHHHHHHHH
Q 016855 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHV 148 (381)
Q Consensus 71 ~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~--~tD~tiGFdTA~~~~~~ai~~l~~ 148 (381)
+++++|++++||+||+||||||+++|++|++++.+.|++++|||||||||||++ +||+|||||||+++++++|+++.+
T Consensus 262 ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~I~ni~~ 341 (1419)
T PTZ00287 262 AIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCT 341 (1419)
T ss_pred HHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 699999999999999999999999
Q ss_pred hhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC-hhhH----HHHHHHHHHh-CCceEEEEecCCC
Q 016855 149 EVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-PGGL----FEFIERQLKE-NGHMVIVVAEGAG 222 (381)
Q Consensus 149 tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~-~~~~----~~~I~~~~~~-~~~~iIvVsEG~~ 222 (381)
++.|.+++|||||||||+|||||++||||+ +||+|||||++++.+. +.++ ++.|.+|+.. ++|+|||||||+.
T Consensus 342 D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAt-gAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gVIvVsEGli 420 (1419)
T PTZ00287 342 DVKTGHNVYHVVRVMGRSASHVVLECALQT-RPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVILIPEGLI 420 (1419)
T ss_pred HHHHhCCeEEEEEECCCcchHHHHHHHHhc-CCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 887766778999999999999999999999 8999999998653321 1243 4445555554 5899999999987
Q ss_pred chhhh-------------------ccC----------------CccccccccCCccchhhH--HHHHHHHHhhhccc--c
Q 016855 223 QEFVA-------------------QSM----------------PAVDEKDASGNRLLLDIG--LWLTQKIKDHFTKV--Q 263 (381)
Q Consensus 223 ~~~~~-------------------~~~----------------~~~~~~D~~G~~~l~~i~--~~l~~~i~~~~~~~--~ 263 (381)
+.... +.+ +....+|+|||+++++++ +.|++++++++... .
T Consensus 421 e~Ipe~~~Li~eln~~l~~g~~~~~~~~~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~~~L~~~~~~ 500 (1419)
T PTZ00287 421 EFVPEMKILIGELNVILKEGPFDASKLKHSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESELAKLNDN 500 (1419)
T ss_pred hhcchHHHHHHHhhhhcccCcchhhhhhhhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHHHHHHHHHhc
Confidence 62111 000 011258999999998765 46666666665421 1
Q ss_pred ceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------ccccccHHHHHhh
Q 016855 264 KMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIARVTET 329 (381)
Q Consensus 264 r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~~~~~-------~~~~vpl~~~~~~ 329 (381)
...+..+...+||.|||+.||.||+.||+.||..|++++.+|.||+|+++++- ++..+||..++.-
T Consensus 501 g~~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~~m~~ 573 (1419)
T PTZ00287 501 NLNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMHV 573 (1419)
T ss_pred CCCeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHHHhhH
Confidence 12345667779999999999999999999999999999999999999999872 2457999998873
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=4e-64 Score=551.31 Aligned_cols=319 Identities=16% Similarity=0.183 Sum_probs=268.4
Q ss_pred cccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccc-cccCCC-----CchHHH
Q 016855 5 SSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTIL-RTSRGG-----HDTNKI 72 (381)
Q Consensus 5 ~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~L-GtsR~~-----~~~~~i 72 (381)
-..|++|||+||||+|+.. ..++| ++||.||+++++++|+.+.++.++++|||+| ||+|.+ ++++++
T Consensus 842 LtSGGdAPG~NnVIrgvv~~a~~~~g~~~g-f~G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~f~t~e~~~ka 920 (1419)
T PTZ00287 842 VFLSRQAPGAMNVLCGLYRRLKLLKGVCIA-FYGLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSLFDKENRNKV 920 (1419)
T ss_pred ECcCCCcHhHHHHHHHHHHHHHHhCCeEEE-EeCchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCCCCCHHHHHHH
Confidence 3459999999999998876 22455 5599999999999999999999999999999 999963 368999
Q ss_pred HHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccC--CCCCCChHHHHHHHHHHHHHHHHhh
Q 016855 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEV 150 (381)
Q Consensus 73 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~--tD~tiGFdTA~~~~~~ai~~l~~tA 150 (381)
+++|++++||+||+||||||+++|+.|++++.+.|++++|||||||||||+++ ||+|||||||+++++++|+++++||
T Consensus 921 ~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~seaI~nL~~dA 1000 (1419)
T PTZ00287 921 CETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYASLIGNVLTDA 1000 (1419)
T ss_pred HHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 9999999999999999999999999
Q ss_pred hhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC-----hhhHHHHHHHHHHh-CCceEEEEecCCCch
Q 016855 151 ESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-----PGGLFEFIERQLKE-NGHMVIVVAEGAGQE 224 (381)
Q Consensus 151 ~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~-----~~~~~~~I~~~~~~-~~~~iIvVsEG~~~~ 224 (381)
.||++||||||||||+||||||+||||+ +||+|||||++++.+- ...+++.|++|.++ ++|+|||||||+...
T Consensus 1001 ~S~~ry~~fVEVMGR~aGhLALe~aLat-gAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygIVlV~EGLie~ 1079 (1419)
T PTZ00287 1001 VSMPKYWHFIRLMGRSPSHEVLECALQT-HPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGTVLIPDALLMH 1079 (1419)
T ss_pred HhcCCcEEEEEECCCchHHHHHHHHHhc-CCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEEEEEcCcHHHh
Confidence 9998789999999999999999999999 8999999999987210 12677888888776 589999999996432
Q ss_pred h-------------hhc----------------------------------------------cCC--------------
Q 016855 225 F-------------VAQ----------------------------------------------SMP-------------- 231 (381)
Q Consensus 225 ~-------------~~~----------------------------------------------~~~-------------- 231 (381)
+ ..+ .|+
T Consensus 1080 Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~~lf~slP~~i 1159 (1419)
T PTZ00287 1080 LPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSLALLKTFPQFI 1159 (1419)
T ss_pred CHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHHHHHHhccHHH
Confidence 1 100 000
Q ss_pred --ccccccccCCccchhh--HHHHHHHHHhhhccc-------cceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHH
Q 016855 232 --AVDEKDASGNRLLLDI--GLWLTQKIKDHFTKV-------QKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVH 300 (381)
Q Consensus 232 --~~~~~D~~G~~~l~~i--~~~l~~~i~~~~~~~-------~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~ 300 (381)
..-.+|. |+++++.+ .+.|++++++++... .++....++ +||..||+.||-||+.||+.||..|..
T Consensus 1160 ~~qLl~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~F~~~~Hf--fGYegR~~~PS~FD~~y~Y~LG~~A~~ 1236 (1419)
T PTZ00287 1160 IKELLHVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGSFMGLTHF--FGYQGRSSLPSEFDCKLAYSYGHAASI 1236 (1419)
T ss_pred HHHHhccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccccceeeec--cccccccCCCCccchHHHHHHHHHHHH
Confidence 0114687 88888744 467777777766431 122334454 799999999999999999999999999
Q ss_pred HHHcCCCceEEEEeC--C-----ccccccHHHHHh
Q 016855 301 GAMAGFTGFTVGPVN--S-----RHAYIPIARVTE 328 (381)
Q Consensus 301 ~~~~G~sg~mv~~~~--~-----~~~~vpl~~~~~ 328 (381)
++..|.+|+|+++++ + +...+||..++.
T Consensus 1237 li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~ 1271 (1419)
T PTZ00287 1237 VIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMK 1271 (1419)
T ss_pred HHhCCCeEEEEEecCccCCHHHeEEccchhhhhhc
Confidence 999999999999987 2 246799988776
No 27
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=3.6e-57 Score=493.59 Aligned_cols=320 Identities=14% Similarity=0.168 Sum_probs=258.2
Q ss_pred ccCCCCCcHHHHHhhhcC----CEEEEEccchhhhhcCCe--EeCC----hhhHhchhhcCCcccccc----------CC
Q 016855 6 SVICFCYSLPLFVKHLHH----NSLIEFQGGYRGFYSKNT--LTLS----PKVVNDIHKRGGTILRTS----------RG 65 (381)
Q Consensus 6 ~~~~~~pg~~~vi~gl~~----~~V~G~~~G~~GL~~~~~--~~L~----~~~v~~i~~~GGt~LGts----------R~ 65 (381)
-.|+++||+||||+|++. ..|+||++||.||++++. +.|+ .+.++.++++||++|+++ |+
T Consensus 682 ~~g~~aPG~NnVI~g~~~~~~~~gvig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~~~~~~~~~~~~~~~r~ 761 (1328)
T PTZ00468 682 LSCLSTPGTQNVICGLVNGLPSLKQLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCIFPNGVEIKMNVSEKKY 761 (1328)
T ss_pred ecCCCCccHHHHHHHHHHHHHhCCcEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCeeeecccccccccccccc
Confidence 358999999999999988 569999999999999974 4566 578999999999999999 63
Q ss_pred CC------------------------chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcC-----CCceEeeec
Q 016855 66 GH------------------------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-----LQVAVAGIP 116 (381)
Q Consensus 66 ~~------------------------~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g-----~~i~vIgIP 116 (381)
.+ +.+.+.++|++++||+||+||||||+++|+.|++++.+++ .+++|||||
T Consensus 762 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVP 841 (1328)
T PTZ00468 762 SNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVP 841 (1328)
T ss_pred CccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeC
Confidence 21 2477999999999999999999999999999999987754 358899999
Q ss_pred cccccCccC--CCCCCChHHHHHHHHHHH-HHHHHhhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCC---
Q 016855 117 KTIDNDIAV--IDKSFGFDTAVEEAQRAI-NAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP--- 190 (381)
Q Consensus 117 kTIDNDi~~--tD~tiGFdTA~~~~~~ai-~~l~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~--- 190 (381)
||||||+++ ||+|||||||+++++++| +.+++++.|| +||||||+|||+||||||++|||+ +||+|+|||++
T Consensus 842 kTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~-kr~~fVevMGR~ag~LAL~~gLat-ganivlIpEe~~~~ 919 (1328)
T PTZ00468 842 VCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASAT-KYWYFMKMIGDKTSNVALEVGIQT-HPNLVVIPERYADS 919 (1328)
T ss_pred ccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcC-CcEEEEEECCcChHHHHHHHHHhh-CCCEEEecCccccc
Confidence 999999988 999999999999999999 5566666665 689999999999999999999999 89999999997
Q ss_pred -----------CCCCC-hhhHHHHHHHHHHh-CCceEEEEecCCCchhh---------hc--------------------
Q 016855 191 -----------FYLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQEFV---------AQ-------------------- 228 (381)
Q Consensus 191 -----------~~~~~-~~~~~~~I~~~~~~-~~~~iIvVsEG~~~~~~---------~~-------------------- 228 (381)
++++. ..++++.|++|.+. ++|++||||||+.+.+. .+
T Consensus 920 ~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~li~e~~a~~~~~~~~~~~~~~~~~ 999 (1328)
T PTZ00468 920 KLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRKIFSRFSTQNLCNASNSGNCEILGS 999 (1328)
T ss_pred ccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHHHHHHHhhhccccccchhhhhhhhh
Confidence 34221 22466777777766 57999999999754331 11
Q ss_pred -cCC--------------c----cccccccCCccchhh--HHHHHHHHHhhhccc-------cceeeeeeEeCCCccccC
Q 016855 229 -SMP--------------A----VDEKDASGNRLLLDI--GLWLTQKIKDHFTKV-------QKMMINMKYIDPTYMIRA 280 (381)
Q Consensus 229 -~~~--------------~----~~~~D~~G~~~l~~i--~~~l~~~i~~~~~~~-------~r~~~~~r~~~~g~~qRg 280 (381)
.++ . .--.|..|+++++.+ .+.|++++++++... .++....++ +||..||
T Consensus 1000 ~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~dgn~~vs~IeTE~lL~~lV~~el~~rk~~g~y~g~f~~~~Hf--fGYegR~ 1077 (1328)
T PTZ00468 1000 ESLSRYEKKVVEDFKLIFSDIDERLIENLINSRKICDVRTEIILSALVQKELKFRRSKNKIKNGMNPVCFS--FTDQVRA 1077 (1328)
T ss_pred ccCCHHHHHHHHHHHhhhHHHHHHHHhccCCCcchhhhhHHHHHHHHHHHHHHHHHhcCccccccceeecc--ccccccC
Confidence 000 0 001344488888754 467778877765431 123333444 7999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHcCC-CceEEEEeC--C-----ccccccHHHHHhh
Q 016855 281 IPSNGSDNIYCTLLAHSAVHGAMAGF-TGFTVGPVN--S-----RHAYIPIARVTET 329 (381)
Q Consensus 281 g~P~~~Dr~la~~lG~~Av~~~~~G~-sg~mv~~~~--~-----~~~~vpl~~~~~~ 329 (381)
+.||-||+.||+.||+.|..++..|. +|+|.+++| + +...+||..++.-
T Consensus 1078 ~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~mm~~ 1134 (1328)
T PTZ00468 1078 CIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMTL 1134 (1328)
T ss_pred CCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHHhhCc
Confidence 99999999999999999999999999 699999987 2 2457999998873
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-41 Score=353.85 Aligned_cols=327 Identities=20% Similarity=0.271 Sum_probs=260.4
Q ss_pred ecccCCCCCcHHHHHhh-----hcC-CEEEEEccchhhhhcCC--eEeCChhhHhchhhcCCccccccCCC-----CchH
Q 016855 4 ISSVICFCYSLPLFVKH-----LHH-NSLIEFQGGYRGFYSKN--TLTLSPKVVNDIHKRGGTILRTSRGG-----HDTN 70 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~g-----l~~-~~V~G~~~G~~GL~~~~--~~~L~~~~v~~i~~~GGt~LGtsR~~-----~~~~ 70 (381)
+...|+++||||+.++. ++. .++|++++||+||+++. +.+++|..++.|...||+++||.|++ +.+.
T Consensus 1 v~tsggd~~gmnaavr~~vr~~i~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~ 80 (666)
T KOG2440|consen 1 VLTSGGDSQGMNAAVRAVVRMGIYRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRL 80 (666)
T ss_pred CcCCCCCCCCccHHHHHHHHhccccCceEEEEecccccccccccchhhcchhhhCCcccCCCccccccccccccccccee
Confidence 35679999999998874 333 89999999999999965 77899999999999999999999975 3577
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHH-------HHc----------CCCceEeeeccccccCccCCCCCCChH
Q 016855 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV-------EKR----------GLQVAVAGIPKTIDNDIAVIDKSFGFD 133 (381)
Q Consensus 71 ~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~-------~~~----------g~~i~vIgIPkTIDNDi~~tD~tiGFd 133 (381)
+...++-+.+|+.|+++|||||+++|+.+-++. .+. |....++||+.|||||++++|.++|-|
T Consensus 81 ~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~d 160 (666)
T KOG2440|consen 81 AAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGID 160 (666)
T ss_pred ccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccceeeccc
Confidence 889999999999999999999999998775431 111 456789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCce
Q 016855 134 TAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHM 213 (381)
Q Consensus 134 TA~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~~~~ 213 (381)
||++. ++||.+..||.||+ |-|++|+|||+|||||+-+++|+ ++|.|++||.|... ++++++.+.. .++.+.-
T Consensus 161 sal~r--e~id~~~~ta~sh~-RgFv~evmgr~cg~lalv~~ia~-~aD~i~~pe~~~~~--~~q~~~~l~~-~r~~Gln 233 (666)
T KOG2440|consen 161 SALHR--EAIDAITSTAQSHS-RGFVAEVMGRHCGYLALVAAIAG-GADTIFIPERPGED--PEQLCEILDS-IRKRGLN 233 (666)
T ss_pred cchhh--hhhhhhhhhhccCc-ceEEeeehhhccchHHHHHHhhc-CCCEEEecCCCCCC--HHHHHHHHHH-HHhCCCC
Confidence 99999 99999999999996 69999999999999999999999 79999999998754 3456665444 3334577
Q ss_pred EEEEecCCCchhhhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHH
Q 016855 214 VIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTL 293 (381)
Q Consensus 214 iIvVsEG~~~~~~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~ 293 (381)
+|+|+||+.. ..|++. +++.++++.- .+..+.++.+++||+||++.|++|||++|.+
T Consensus 234 ~viVigG~~~--------------~~ga~i-------~ae~vk~~~~--k~lv~g~p~TilGdvqrgg~p~afDr~ta~~ 290 (666)
T KOG2440|consen 234 IVIVIGGAID--------------NTGAPI-------IAEEVKERKL--KVLVVGVPKTILGDVQRGGVPSAFDRITACE 290 (666)
T ss_pred EEEEEecccC--------------CCCCcc-------cHHHHHHhhh--heeeecceeeecCccccCCcccccchHHHHH
Confidence 8999999853 334433 3444444421 1223456667899999999999999999999
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCccccccHHHHHhhCCCCC--CChHHHHHHHHhcCCCCCCChHHHhHHhhh
Q 016855 294 LAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVK--LTDRMWARLLASTNQPSFLNCSEVLHHQEK 364 (381)
Q Consensus 294 lG~~Av~~~~~G~sg~mv~~~~~~~~~vpl~~~~~~~k~v~--~~~~~~~~~l~~~~~~~F~~~~~~~~~~~~ 364 (381)
+|..|+.+++..... ++.+.+++..|+.+.....+.+. .+...|...... ...+|..+.++++.+.-
T Consensus 291 ~g~eAI~a~l~~a~s---~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~el-r~~~f~~~~~~~~~~~~ 359 (666)
T KOG2440|consen 291 MGQEAINAALEEAES---AENGNGIVRLMGRESVHITLEATLASRDKDFCLAPEL-RGRKFTLNLNTYKILDV 359 (666)
T ss_pred HHHHHHHHHHhhchh---hcccceeEEehhHHHHHHHHHHHHhcCccceeehhhh-cchhhhhhhhHHhhhhc
Confidence 999999999876544 56678899999988766554433 223345555555 46677777777776654
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=308.41 Aligned_cols=358 Identities=40% Similarity=0.509 Sum_probs=298.6
Q ss_pred cccCCCCCcHHHHHhhhcC---------CEEEEEccc----------------hhhhhcCCe--EeCChhhHhchhhcCC
Q 016855 5 SSVICFCYSLPLFVKHLHH---------NSLIEFQGG----------------YRGFYSKNT--LTLSPKVVNDIHKRGG 57 (381)
Q Consensus 5 ~~~~~~~pg~~~vi~gl~~---------~~V~G~~~G----------------~~GL~~~~~--~~L~~~~v~~i~~~GG 57 (381)
-+-|++|||.|+||+|+-+ .+++|..-+ ++|++.+.. .-+....+..++..++
T Consensus 126 Vt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~evmgr~cg~lalv~~ia~~aD 205 (666)
T KOG2440|consen 126 VTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAEVMGRHCGYLALVAAIAGGAD 205 (666)
T ss_pred eecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEeeehhhccchHHHHHHhhcCCC
Confidence 3569999999999995544 466665544 889998887 5677778999999999
Q ss_pred ccccccCCCCc---hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChH-
Q 016855 58 TILRTSRGGHD---TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD- 133 (381)
Q Consensus 58 t~LGtsR~~~~---~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFd- 133 (381)
++++++|..++ ..++++..++.|++.+|||||+++.++|..++++++++.++..++++||||||||+-.+.+++||
T Consensus 206 ~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g~p~TilGdvqrgg~p~afDr 285 (666)
T KOG2440|consen 206 TIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTILGDVQRGGVPSAFDR 285 (666)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeecceeeecCccccCCcccccch
Confidence 99999998776 77899999999999999999999999999999999999999899999999999999888888888
Q ss_pred -HHHHHHHHHHHHHHHhhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCC-----------------------
Q 016855 134 -TAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPES----------------------- 189 (381)
Q Consensus 134 -TA~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~----------------------- 189 (381)
||++...+||.++..+|.|..++..||++|||.|+++|+++++|++..|.+++||.
T Consensus 286 ~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~~f~~~~~~~~~~~~~~~~~~ 365 (666)
T KOG2440|consen 286 ITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELRGRKFTLNLNTYKILDVVDPRAE 365 (666)
T ss_pred HHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhcchhhhhhhhHHhhhhccccccc
Confidence 99999999999999999999889999999999999999999999987899999999
Q ss_pred --CCCCC--ChhhHHHHHHHHHHhCCceEEEEecCCCchhhhccCCcc-ccccccCCccchhhHHHHHHHHHhhhcccc-
Q 016855 190 --PFYLE--GPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAV-DEKDASGNRLLLDIGLWLTQKIKDHFTKVQ- 263 (381)
Q Consensus 190 --~~~~~--~~~~~~~~I~~~~~~~~~~iIvVsEG~~~~~~~~~~~~~-~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~- 263 (381)
|++.+ ...-.+.....+++...|.+++++|+..+.+....+... ...|..++..+.+++-|+.+-.++...+..
T Consensus 366 ~~p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~d~~~~~~~~dv~~w~~~ggs~~gtk~~~ 445 (666)
T KOG2440|consen 366 QDPFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAKDALGELIWKDVGLWLSQGGSALGTKRET 445 (666)
T ss_pred cCCCCceeccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhhhhhhhhHHHHhhcccccCchhheecccC
Confidence 65544 111123445666766677888888888765544333221 124888888888888888777766643221
Q ss_pred ceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCCccccccHHHHHhhCCCCCCChHHHHHH
Q 016855 264 KMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRMWARL 343 (381)
Q Consensus 264 r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~~~~~~~~~vpl~~~~~~~k~v~~~~~~~~~~ 343 (381)
.....++++++.|..|.-+.+..|-.+++.++..+++..+++++++.+++++..-...|.-...+....++....+|.++
T Consensus 446 ~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~gvdt~~N~~~~~ 525 (666)
T KOG2440|consen 446 PEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSLGVDTALNAWARV 525 (666)
T ss_pred cccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccccccccchhHhhhhhh
Confidence 11236888999999999999999999999999999999999999999999998888888888888888999999999999
Q ss_pred HHhcCCCCCCChHHHhHHh
Q 016855 344 LASTNQPSFLNCSEVLHHQ 362 (381)
Q Consensus 344 l~~~~~~~F~~~~~~~~~~ 362 (381)
+..+.||.|.....++..-
T Consensus 526 ~d~t~Q~a~~T~~~vf~~e 544 (666)
T KOG2440|consen 526 CDSTKQSAFGTKRRVFVVE 544 (666)
T ss_pred hhhccCCcccccceeEEEE
Confidence 9999999998766555443
No 30
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=94.05 E-value=0.15 Score=48.98 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=42.6
Q ss_pred HHHHHHHHcCC------cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHH---HHHHHH
Q 016855 71 KIVDNIEDRGI------NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA---VEEAQR 141 (381)
Q Consensus 71 ~i~~~l~~~~I------d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA---~~~~~~ 141 (381)
.+-+..++|++ |.+|+||||||+-.|.+... ..+++|+||.. -++||-|. .+.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~----------G~lGFL~~~~~~~e~~~ 74 (246)
T PRK04761 10 ALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR----------GSVGFLMNEYSEDDLLE 74 (246)
T ss_pred HHHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC----------CCCCcccCCCCHHHHHH
Confidence 34455667777 99999999999876654422 23577999865 26899874 355556
Q ss_pred HHHHHHH
Q 016855 142 AINAAHV 148 (381)
Q Consensus 142 ai~~l~~ 148 (381)
+++++..
T Consensus 75 ~l~~~~~ 81 (246)
T PRK04761 75 RIAAAEP 81 (246)
T ss_pred HHHHhhc
Confidence 6666543
No 31
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.03 E-value=0.32 Score=47.69 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=42.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHHHHHHHHHHHhhhhcCcce
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVEVESVENGV 157 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~~~ai~~l~~tA~S~~~rv 157 (381)
+.|.+|+||||||+-.|.+... ..+++|+||-. -++||-|.+ +.+.++++++...-..-.+|
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~g~y~ie~r- 127 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIHA----------GHLGFLTDITVDEAEKFFQAFFQGEFEIEKP- 127 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEeC----------CCcccCCcCCHHHHHHHHHHHHcCCCeEEEE-
Confidence 6899999999999655444322 23567898852 479999874 55667777765433232232
Q ss_pred EEEEe
Q 016855 158 GIVKL 162 (381)
Q Consensus 158 ~iVEv 162 (381)
+.+|+
T Consensus 128 ~~L~~ 132 (287)
T PRK14077 128 YMLSV 132 (287)
T ss_pred EEEEE
Confidence 44454
No 32
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.99 E-value=0.28 Score=47.54 Aligned_cols=68 Identities=26% Similarity=0.341 Sum_probs=43.9
Q ss_pred hHHHHHHHHHcC-------CcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHH
Q 016855 69 TNKIVDNIEDRG-------INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEA 139 (381)
Q Consensus 69 ~~~i~~~l~~~~-------Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~ 139 (381)
.+++.+.|++++ .|.+|+||||||+-.|.+... ..-.+++++||.- -++||-|.+ +..
T Consensus 17 ~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~---~~~~~iPilGIN~----------G~lGFL~~~~~~~~ 83 (265)
T PRK04885 17 ASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYE---NQLDKVRFVGVHT----------GHLGFYTDWRPFEV 83 (265)
T ss_pred HHHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhc---ccCCCCeEEEEeC----------CCceecccCCHHHH
Confidence 344555565544 589999999999866554432 1003577999873 479999974 345
Q ss_pred HHHHHHHHHh
Q 016855 140 QRAINAAHVE 149 (381)
Q Consensus 140 ~~ai~~l~~t 149 (381)
-++++++...
T Consensus 84 ~~~l~~i~~g 93 (265)
T PRK04885 84 DKLVIALAKD 93 (265)
T ss_pred HHHHHHHHcC
Confidence 6666666543
No 33
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.19 E-value=0.22 Score=48.14 Aligned_cols=64 Identities=22% Similarity=0.360 Sum_probs=41.8
Q ss_pred hHHHHHHHHHcCC-----cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHHHH
Q 016855 69 TNKIVDNIEDRGI-----NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQR 141 (381)
Q Consensus 69 ~~~i~~~l~~~~I-----d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~~~ 141 (381)
.+++.+.++.+++ |.+|+||||||+-.|.+.+. ..+++|+||.. -++||-|.+ +.+.+
T Consensus 17 ~~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~----------G~lGFL~~~~~~~~~~ 81 (259)
T PRK00561 17 LPKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT----------GHLGFYTSFNETDLDQ 81 (259)
T ss_pred HHHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec----------CCCccccccCHHHHHH
Confidence 3445556655566 99999999999876654432 23577999862 268998854 34444
Q ss_pred -HHHHHH
Q 016855 142 -AINAAH 147 (381)
Q Consensus 142 -ai~~l~ 147 (381)
.++.+.
T Consensus 82 ~~~~~l~ 88 (259)
T PRK00561 82 NFANKLD 88 (259)
T ss_pred HHHHHHh
Confidence 455553
No 34
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.72 E-value=0.28 Score=48.56 Aligned_cols=69 Identities=28% Similarity=0.383 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHHHHHHHHHHHhhhhcCcce
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVEVESVENGV 157 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~~~ai~~l~~tA~S~~~rv 157 (381)
+.|.+|++|||||+-.|.+... ..+++|+||.. -++||-|.+ +.+.++++++...-..-..|-
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g~y~i~~R~ 136 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL----------GHVGFLAEAEAEDLDEAVERVVDRDYRVEERM 136 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec----------CCCceeccCCHHHHHHHHHHHHcCCceEEEee
Confidence 6899999999999876655432 23467999974 478998875 556677777664433333333
Q ss_pred EE-EEec
Q 016855 158 GI-VKLM 163 (381)
Q Consensus 158 ~i-VEvM 163 (381)
.+ +++.
T Consensus 137 ~L~~~v~ 143 (306)
T PRK03372 137 TLDVTVR 143 (306)
T ss_pred eEEEEEE
Confidence 33 4544
No 35
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.23 E-value=0.62 Score=45.20 Aligned_cols=54 Identities=28% Similarity=0.336 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHcCC-CceEeeeccccccCccCCCCCCChHHH--HHHHHHHHHHHHH
Q 016855 81 INQVYIIGGDGTQKGAALIYKEVEKRGL-QVAVAGIPKTIDNDIAVIDKSFGFDTA--VEEAQRAINAAHV 148 (381)
Q Consensus 81 Id~LvvIGGdgS~~~a~~L~~~~~~~g~-~i~vIgIPkTIDNDi~~tD~tiGFdTA--~~~~~~ai~~l~~ 148 (381)
.|.+|+||||||+-.|.+... .. +++++||.- +-++||-|. .+.+.++++++..
T Consensus 40 ~D~vi~lGGDGT~L~a~~~~~-----~~~~~pilgIn~---------~G~lGFL~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 40 ANIIVSIGGDGTFLQAVRKTG-----FREDCLYAGIST---------KDQLGFYCDFHIDDLDKMIQAITK 96 (264)
T ss_pred ccEEEEECCcHHHHHHHHHhc-----ccCCCeEEeEec---------CCCCeEcccCCHHHHHHHHHHHHc
Confidence 679999999999866654432 12 356888754 248899775 3455666666543
No 36
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.95 E-value=0.44 Score=47.16 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=38.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHHHHHHHHHHHh
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 149 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~~~ai~~l~~t 149 (381)
++|.+|+||||||+-.|.+... ..+++|+||-. -++||-|.+ +.+.++++++...
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN~----------G~lGFLt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTINT----------GHLGFLTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHHHcC
Confidence 6899999999999876654432 23577999842 489999874 4555666665433
No 37
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.80 E-value=0.44 Score=46.86 Aligned_cols=58 Identities=28% Similarity=0.346 Sum_probs=41.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHHHHHHHHHHHhhhh
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVEVES 152 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~~~ai~~l~~tA~S 152 (381)
+.|.+|++|||||+-.|.+... ..+++|+||-. -++||-|.+ +.+.++++++...-..
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~g~~~ 123 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT----------GRLGFLATVSKEEIEETIDELLNGDYT 123 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec----------CCCCcccccCHHHHHHHHHHHHcCCce
Confidence 5899999999999765544332 23567999864 479999986 4567777777654433
No 38
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=90.71 E-value=0.15 Score=49.66 Aligned_cols=64 Identities=23% Similarity=0.517 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHHHHHHHHHH
Q 016855 70 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 147 (381)
Q Consensus 70 ~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~~~ai~~l~ 147 (381)
....+.+...+.|.+|++|||||+..|.+... +.+++|+||+. -+.||-+.. +.+.++++++.
T Consensus 66 ~~~~~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~----------G~lgfl~~~~~~~~~~~l~~~~ 130 (285)
T PF01513_consen 66 RNALEEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT----------GTLGFLTEFEPEDIEEALEKIL 130 (285)
T ss_dssp EECCHHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES----------SSSTSSSSEEGCGHHHHHHHHH
T ss_pred chhhhhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC----------CCccccccCCHHHHHHHHHHHh
Confidence 34456677889999999999999988766542 24688999994 356666553 34455555544
Q ss_pred H
Q 016855 148 V 148 (381)
Q Consensus 148 ~ 148 (381)
.
T Consensus 131 ~ 131 (285)
T PF01513_consen 131 A 131 (285)
T ss_dssp H
T ss_pred c
Confidence 4
No 39
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.54 E-value=0.74 Score=44.33 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHH--HHHHHHHHHHHh
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAHVE 149 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~--~~~~ai~~l~~t 149 (381)
+.|.+|+||||||+-.|.+.. +++|+||. . -+.||-|..+ .+-++++++...
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin-------~---G~lGfl~~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKV--------GTPLVGFK-------A---GRLGFLSSYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHc--------CCCEEEEe-------C---CCCccccccCHHHHHHHHHHHHcC
Confidence 569999999999987664432 46689886 2 2589988754 345566665443
No 40
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.17 E-value=0.6 Score=45.91 Aligned_cols=54 Identities=26% Similarity=0.474 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHH--HHHHHHHHHHH
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAHV 148 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~--~~~~ai~~l~~ 148 (381)
+.|.+|++|||||+-.|.+... ..+++|+||-. -++||-|.++ .+.++++++..
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~----------G~lGFl~~~~~~~~~~~l~~i~~ 118 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR----------GNLGFLTDLDPDNALQQLSDVLE 118 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC----------CCCCcccccCHHHHHHHHHHHHc
Confidence 5899999999999876654432 23467898863 4689988754 34455555543
No 41
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.12 E-value=0.47 Score=46.76 Aligned_cols=55 Identities=25% Similarity=0.279 Sum_probs=39.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHHHHHHHHHHHh
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 149 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~~~ai~~l~~t 149 (381)
+.|.+|++|||||+-.|.+... ..+++|+||-. -++||-|.+ +.+.++++++...
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ----------GHLGFLTQIPREYMTDKLLPVLEG 124 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec----------CCCeEeeccCHHHHHHHHHHHHcC
Confidence 5899999999999877655432 23467999863 369999974 4556667766543
No 42
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=90.12 E-value=4 Score=39.32 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=76.9
Q ss_pred cccccCCCCchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHH
Q 016855 59 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 138 (381)
Q Consensus 59 ~LGtsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~ 138 (381)
+|.++...++.++.++.|.++++|++|+.+-..+...-..+. +.+ +++|.+=...+++. .. .++.+| =.+.
T Consensus 35 ~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~----~~~--iPvV~~~~~~~~~~-~~-~~V~~D-~~~a 105 (279)
T PF00532_consen 35 LLCNTGDDEEKEEYIELLLQRRVDGIILASSENDDEELRRLI----KSG--IPVVLIDRYIDNPE-GV-PSVYID-NYEA 105 (279)
T ss_dssp EEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCTCHHHHHHH----HTT--SEEEEESS-SCTTC-TS-CEEEEE-HHHH
T ss_pred EEecCCCchHHHHHHHHHHhcCCCEEEEecccCChHHHHHHH----HcC--CCEEEEEeccCCcc-cC-CEEEEc-chHH
Confidence 566666556666899999999999999997776644433332 224 66888877777761 11 133343 2222
Q ss_pred HHHHHHHHHHhhhhcCcc-eEEEEe-------cCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhC
Q 016855 139 AQRAINAAHVEVESVENG-VGIVKL-------MGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 210 (381)
Q Consensus 139 ~~~ai~~l~~tA~S~~~r-v~iVEv-------MGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~ 210 (381)
+.++.+.+. ...| ++ |.++-. .-|..||..+.... +...+-.++.+..++.+ .=.+.+++.++.+
T Consensus 106 ~~~a~~~Li--~~Gh-~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~-Gl~~~~~~i~~~~~~~~---~g~~~~~~ll~~~ 178 (279)
T PF00532_consen 106 GYEATEYLI--KKGH-RRPIAFIGGPEDSSTSRERLQGYRDALKEA-GLPIDEEWIFEGDFDYE---SGYEAARELLESH 178 (279)
T ss_dssp HHHHHHHHH--HTTC-CSTEEEEEESTTTHHHHHHHHHHHHHHHHT-TSCEEEEEEEESSSSHH---HHHHHHHHHHHTS
T ss_pred HHHHHHHHH--hccc-CCeEEEEecCcchHHHHHHHHHHHHHHHHc-CCCCCcccccccCCCHH---HHHHHHHHHHhhC
Confidence 234444444 2355 46 666554 23556777654442 11234455555556554 3345566666665
Q ss_pred Cc
Q 016855 211 GH 212 (381)
Q Consensus 211 ~~ 212 (381)
.-
T Consensus 179 p~ 180 (279)
T PF00532_consen 179 PD 180 (279)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 43
>PLN02929 NADH kinase
Probab=89.10 E-value=0.7 Score=45.65 Aligned_cols=64 Identities=22% Similarity=0.271 Sum_probs=39.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecc---ccccCc-cCC----CCCCChHHHH--HHHHHHHHHHHHh
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK---TIDNDI-AVI----DKSFGFDTAV--EEAQRAINAAHVE 149 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPk---TIDNDi-~~t----D~tiGFdTA~--~~~~~ai~~l~~t 149 (381)
+.|.+|++|||||+-.|....+ .+++|+||-. +.|.-- ... ..+.||-+++ +.+.++++++..-
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~~------~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFLD------DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHcC------CCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcC
Confidence 4578899999999876654432 2467999843 332211 111 2389999984 4455666666543
No 44
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=88.78 E-value=0.63 Score=46.53 Aligned_cols=51 Identities=35% Similarity=0.575 Sum_probs=40.4
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCc
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 123 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi 123 (381)
+|...+++.+.++|+|-+++.|||||.+....-. +-+++|+|||.=.-|=.
T Consensus 87 ~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av------~~~vPvLGipaGvk~~S 137 (355)
T COG3199 87 EDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV------GADVPVLGIPAGVKNYS 137 (355)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc------cCCCceEeeccccceec
Confidence 4677889999999999999999999988654321 44688999998665543
No 45
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=88.74 E-value=0.69 Score=48.68 Aligned_cols=54 Identities=31% Similarity=0.411 Sum_probs=38.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHHHHHHHHHHH
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 148 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~~~ai~~l~~ 148 (381)
++|.+|+||||||+-.|..+.. ...++|+||. --++||-|.+ +.+.++++++..
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~G~LGFLt~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------MGSLGFMTPFHSEQYRDCLDAILK 317 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------CCCcceecccCHHHHHHHHHHHHc
Confidence 5899999999999877665532 2346789883 3489998875 445566666643
No 46
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.68 E-value=0.71 Score=45.44 Aligned_cols=56 Identities=29% Similarity=0.390 Sum_probs=40.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHHHHHHHHHHHhh
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVEV 150 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~~~ai~~l~~tA 150 (381)
+.|.+|++|||||+-.+..... ..+++|+||.. -++||-|+. +...++++++....
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~----------G~lGFl~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR----------GRLGFLTDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC----------CcccccccCCHHHHHHHHHHHHcCC
Confidence 6899999999999876654322 23567999985 369999874 45667777765433
No 47
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=87.12 E-value=20 Score=33.27 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=46.1
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 148 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~ 148 (381)
...+++.+...++|++|+.+.+... .....+.+.+.++ +||.+-. +.+..+.++++|.. .....+.+.+..
T Consensus 46 ~~~~i~~~~~~~~dgiIi~~~~~~~--~~~~i~~~~~~~i--pvv~~~~----~~~~~~~~V~~d~~-~~g~~~~~~l~~ 116 (271)
T cd06321 46 QVSQIDNFIAAKVDLILLNAVDSKG--IAPAVKRAQAAGI--VVVAVDV----AAEGADATVTTDNV-QAGEISCQYLAD 116 (271)
T ss_pred HHHHHHHHHHhCCCEEEEeCCChhH--hHHHHHHHHHCCC--eEEEecC----CCCCccceeeechH-HHHHHHHHHHHH
Confidence 4467788889999999998765431 1222244455564 5776632 22233456777642 333444444443
Q ss_pred hhhhcCcceEEEE
Q 016855 149 EVESVENGVGIVK 161 (381)
Q Consensus 149 tA~S~~~rv~iVE 161 (381)
.+..| +++.++-
T Consensus 117 ~~~g~-~~i~~i~ 128 (271)
T cd06321 117 RLGGK-GNVAILN 128 (271)
T ss_pred HhCCC-ceEEEEe
Confidence 33355 4577764
No 48
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=86.70 E-value=25 Score=32.18 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=28.3
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
+..+.++++.+.++|++++...+.+-.. .+.+.+.|+ ++|.+
T Consensus 42 ~~~~~i~~~~~~~vdgiii~~~~~~~~~----~~~~~~~~i--pvV~~ 83 (266)
T cd06278 42 DLDAALRQLLQYRVDGVIVTSGTLSSEL----AEECRRNGI--PVVLI 83 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCHHH----HHHHhhcCC--CEEEE
Confidence 4566788899999999999887654322 233444564 47765
No 49
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=85.43 E-value=25 Score=33.98 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=28.1
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
.....++.|...++|++|+.+.+.... .+.+.+.+.++| +|.+
T Consensus 108 ~~~~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~iP--vV~~ 150 (342)
T PRK10014 108 QLAQRFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEKGIP--VVFA 150 (342)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhcCCC--EEEE
Confidence 345778889999999999998765422 222344455654 5644
No 50
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.92 E-value=1.1 Score=44.29 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHH---HHHHHHHHHh
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA---QRAINAAHVE 149 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~---~~ai~~l~~t 149 (381)
+.|.+|++|||||+-.+..... +.++++++|.. .-++||-|..... .++++++..-
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~G~lGFL~~~~~~~~~~~~l~~i~~g 115 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------GGHLGFLTHPRDLLQDESVWDRLQED 115 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------CCcceEecCchhhcchHHHHHHHHcC
Confidence 6899999999999876554322 23466888875 3488999975422 4666666543
No 51
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=84.92 E-value=1.7 Score=42.75 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=38.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHH--HHHHHHHHHHHH
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA--VEEAQRAINAAH 147 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA--~~~~~~ai~~l~ 147 (381)
+.|.+|++|||||+-.|..... +.+++++||. --++||-|. .+.+.++++++.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn----------~G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGIN----------HGRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc----------CCCccccccCCHHHHHHHHHHHH
Confidence 6899999999999877655432 2356799986 237899986 345566777664
No 52
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.30 E-value=1.1 Score=43.62 Aligned_cols=53 Identities=26% Similarity=0.486 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHH--HHHHHHHHHH
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAH 147 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~--~~~~ai~~l~ 147 (381)
+.|.+|+||||||+-.|.+... ..+++|+||.. -++||-|..+ .+.+.+.++.
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~----------G~lGFL~~~~~~~~~~~l~~~~ 96 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR----------GNLGFLTDIDPKNAYEQLEACL 96 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHHH
Confidence 6899999999999876654432 23567999852 4689988643 3344454433
No 53
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.32 E-value=2.5 Score=41.19 Aligned_cols=53 Identities=26% Similarity=0.302 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHHHHHHHHHHHhh
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVEV 150 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~~~ai~~l~~tA 150 (381)
+.|.+|++|||||+-.|.+.. . .+|+||-- -++||-|.+ +.+.++++++...-
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~------~--~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRA------K--GPILGINM----------GGLGFLTEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHc------C--CCEEEEEC----------CCCccCcccCHHHHHHHHHHHHcCC
Confidence 789999999999986554321 2 36888843 478998864 45566677766543
No 54
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.29 E-value=1.1 Score=43.82 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=36.8
Q ss_pred HHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHH--HHHHHHHHHH
Q 016855 77 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAH 147 (381)
Q Consensus 77 ~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~--~~~~ai~~l~ 147 (381)
.+.+.|.+|++|||||+-.|..+. ..+++|++||. -+.||-|.++ .+-++++++.
T Consensus 54 ~~~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~----------G~lGFl~~~~~~~~~~~l~~i~ 110 (277)
T PRK03708 54 EEMDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM----------GTLGFLTEVEPEETFFALSRLL 110 (277)
T ss_pred cccCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC----------CCCCccccCCHHHHHHHHHHHH
Confidence 344789999999999987665442 23577999984 2568887654 2334444443
No 55
>PRK11914 diacylglycerol kinase; Reviewed
Probab=81.83 E-value=2.4 Score=41.45 Aligned_cols=70 Identities=30% Similarity=0.526 Sum_probs=49.3
Q ss_pred CCchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHH-HHHHHHHHH
Q 016855 66 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT-AVEEAQRAI 143 (381)
Q Consensus 66 ~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdT-A~~~~~~ai 143 (381)
..+.+++++.+.+.+.|.+|++|||||+..+. +.+. +.++++--||.==-||+. +++|..+ -.+.+.+++
T Consensus 50 ~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv---~~l~--~~~~~lgiiP~GT~NdfA---r~lg~~~~~~~~a~~~i 120 (306)
T PRK11914 50 AHDARHLVAAALAKGTDALVVVGGDGVISNAL---QVLA--GTDIPLGIIPAGTGNDHA---REFGIPTGDPEAAADVI 120 (306)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchHHHHHh---HHhc--cCCCcEEEEeCCCcchhH---HHcCCCCCCHHHHHHHH
Confidence 34677777777788899999999999987653 2222 234567889988889998 5777764 344444444
No 56
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=81.60 E-value=44 Score=30.82 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=25.0
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEe
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVA 113 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vI 113 (381)
..+.++.+...++|++++.+.+.+... ..+ +.+.+++++ +|
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~~~~~~-~~l-~~~~~~~iP--vV 85 (275)
T cd06317 45 QAAQVEDLIAQKVDGIILWPTDGQAYI-PGL-RKAKQAGIP--VV 85 (275)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccccH-HHH-HHHHHCCCc--EE
Confidence 345677788889999999887643211 112 334455654 55
No 57
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.34 E-value=2.5 Score=45.41 Aligned_cols=55 Identities=31% Similarity=0.433 Sum_probs=38.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHHHHHHHHHHHh
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 149 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~~~ai~~l~~t 149 (381)
++|.+|+||||||+-.|.+... ..+++|+||-- -++||-|.+ +.+.++++++...
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~----------G~lGFL~~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM----------GTVGFLTEFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC----------CCCCcCcccCHHHHHHHHHHHHcC
Confidence 4689999999999866654432 23567999854 479999875 4556666665443
No 58
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=80.53 E-value=2.7 Score=42.20 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=44.8
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHc--------------CCCceEeeeccccccCcc
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--------------GLQVAVAGIPKTIDNDIA 124 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~--------------g~~i~vIgIPkTIDNDi~ 124 (381)
++.+++++.+++.++|.+|-|||--+|+.|+.++-.+... +-.+++|.||-|--+--.
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE 136 (366)
T PF00465_consen 65 EDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSE 136 (366)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcccccc
Confidence 3688999999999999999999999999998887654311 011689999988655433
No 59
>PRK13054 lipid kinase; Reviewed
Probab=80.41 E-value=4.6 Score=39.42 Aligned_cols=69 Identities=25% Similarity=0.308 Sum_probs=45.7
Q ss_pred cccCCCCchHHHHHHHHHcCCcEEEEEcCCCcHHHHH-HHHHHHHHcCCCceEeeeccccccCccCCCCCCChHH
Q 016855 61 RTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 134 (381)
Q Consensus 61 GtsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdT 134 (381)
-.++...+..++++...+.+.|.+|++|||||+..+. .|.+. ..+.++++--||.==-||+. .++|-..
T Consensus 37 ~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa---r~lgi~~ 106 (300)
T PRK13054 37 RVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA---TAAGIPL 106 (300)
T ss_pred EEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH---HhcCCCC
Confidence 3344445667777777778899999999999987653 33221 01223567889988889986 3455443
No 60
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=79.88 E-value=3.8 Score=40.64 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=40.0
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHH--cCCCceEeeeccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK--RGLQVAVAGIPKT 118 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~--~g~~i~vIgIPkT 118 (381)
..+++++.+++.+.|.+|-|||--.++.|..++-.... ..-.+++|.||-|
T Consensus 66 ~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 66 VVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 46789999999999999999999999999876543221 1123679999988
No 61
>PRK13055 putative lipid kinase; Reviewed
Probab=79.38 E-value=4.9 Score=39.96 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=49.3
Q ss_pred hHhchhhcCC-c--cccccCCCCchHHHHHHHHHcCCcEEEEEcCCCcHHHHH-HHHHHHHHcCCCceEeeeccccccCc
Q 016855 48 VVNDIHKRGG-T--ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LIYKEVEKRGLQVAVAGIPKTIDNDI 123 (381)
Q Consensus 48 ~v~~i~~~GG-t--~LGtsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~~~~~g~~i~vIgIPkTIDNDi 123 (381)
.+..+....| . ++-|.....+.+++++.+...+.|.+|++|||||+..+. .|.. .+..+++--||.==-||+
T Consensus 24 ~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~----~~~~~~LgiiP~GTgNdf 99 (334)
T PRK13055 24 DILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAP----LEKRPKMAIIPAGTTNDY 99 (334)
T ss_pred HHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhh----cCCCCcEEEECCCchhHH
Confidence 3444444433 2 333443334566777767778899999999999987643 3322 222345666898888888
Q ss_pred cCCCCCCChHH
Q 016855 124 AVIDKSFGFDT 134 (381)
Q Consensus 124 ~~tD~tiGFdT 134 (381)
. +++|..+
T Consensus 100 A---r~Lgi~~ 107 (334)
T PRK13055 100 A---RALKIPR 107 (334)
T ss_pred H---HHcCCCC
Confidence 6 3555543
No 62
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=77.72 E-value=2.7 Score=42.42 Aligned_cols=66 Identities=33% Similarity=0.472 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHcCC----cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHH
Q 016855 67 HDTNKIVDNIEDRGI----NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 138 (381)
Q Consensus 67 ~~~~~i~~~l~~~~I----d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~ 138 (381)
+..+++.+.+.+.+. |.+|.|||--.++.|..++-.. .+| +++|.||-|. +..+|.+.|.-+++++
T Consensus 71 ~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~-~rg--~p~i~VPTT~---lA~vD~~~g~K~~i~~ 140 (354)
T cd08199 71 DTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLY-RRG--TPYVRIPTTL---VGLIDAGVGIKTGVNF 140 (354)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEEcCcc---ceeeecCCCCceEEeC
Confidence 357888899999999 9999999998898888776432 235 5699999997 4445666666665543
No 63
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=77.65 E-value=3.6 Score=41.31 Aligned_cols=64 Identities=25% Similarity=0.422 Sum_probs=47.1
Q ss_pred CchHHHHHHHHHcCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH
Q 016855 67 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 136 (381)
Q Consensus 67 ~~~~~i~~~l~~~~I---d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~ 136 (381)
+..+++++.+++.++ |.+|.|||--.++.|..++-.. .++ +++|.||-|. +..+|.++|--+++
T Consensus 76 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~g--ip~i~IPTT~---~s~~ds~~~~k~~i 142 (358)
T PRK00002 76 ETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATY-MRG--IRFIQVPTTL---LAQVDSSVGGKTGI 142 (358)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHh-cCC--CCEEEcCchh---hhccccCcCCceec
Confidence 357888899999887 9999999999999988776322 234 5699999997 44455555544443
No 64
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=77.58 E-value=2.5 Score=42.28 Aligned_cols=50 Identities=22% Similarity=0.413 Sum_probs=40.7
Q ss_pred CchHHHHHHHHHcCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 67 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 67 ~~~~~i~~~l~~~~I---d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
+..+++++.++++++ |.+|.|||--.++.|..++-.. .+| +++|.||-|.
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTT~ 121 (345)
T cd08195 69 ETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATY-MRG--IDFIQIPTTL 121 (345)
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHH-hcC--CCeEEcchhH
Confidence 357889999999999 9999999999999887776422 245 5699999997
No 65
>PRK13337 putative lipid kinase; Reviewed
Probab=77.16 E-value=5.2 Score=39.08 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=40.9
Q ss_pred CCCchHHHHHHHHHcCCcEEEEEcCCCcHHHHHH-HHHHHHHcCCCceEeeeccccccCcc
Q 016855 65 GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL-IYKEVEKRGLQVAVAGIPKTIDNDIA 124 (381)
Q Consensus 65 ~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~-L~~~~~~~g~~i~vIgIPkTIDNDi~ 124 (381)
...+.+++++.+.+.+.|.+|++|||||+..+.. |.+ .+.++++--||.==-||+.
T Consensus 42 ~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~----~~~~~~lgiiP~GT~NdfA 98 (304)
T PRK13337 42 GPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAE----KENRPKLGIIPVGTTNDFA 98 (304)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhh----CCCCCcEEEECCcCHhHHH
Confidence 3456777777777888999999999999877543 322 2334557778988888886
No 66
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=76.00 E-value=5.7 Score=39.60 Aligned_cols=49 Identities=18% Similarity=0.432 Sum_probs=40.0
Q ss_pred chHHHHHHHHHcCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~I---d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
..+++++.+++++. |.+|.|||--.++.|..++-.. .++ +++|.||-|.
T Consensus 66 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~~--~p~i~VPTT~ 117 (344)
T TIGR01357 66 TVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY-MRG--IRFIQVPTTL 117 (344)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH-ccC--CCEEEecCch
Confidence 47788999999988 8999999999999988776422 234 5699999997
No 67
>PLN02727 NAD kinase
Probab=75.06 E-value=2.6 Score=47.39 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=39.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHHHHHHHHHHHh
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 149 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~~~ai~~l~~t 149 (381)
++|.+|+||||||+-.|..+.. +..++|+||-. -++||-|-+ +.+.+.++++...
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINl----------GrLGFLTdi~~ee~~~~L~~Il~G 799 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNL----------GSLGFLTSHYFEDFRQDLRQVIHG 799 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeC----------CCccccccCCHHHHHHHHHHHHcC
Confidence 5899999999999877765543 23467888753 389998864 4556777776543
No 68
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=74.75 E-value=5.2 Score=39.96 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=40.7
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
++.+++++.+++++.|.+|-|||--+++.|+.++-. ..+++|.||-|-
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTa 111 (351)
T cd08170 64 AEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIA 111 (351)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCcc
Confidence 457889999999999999999999999999888643 246799999884
No 69
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=74.63 E-value=6.2 Score=39.27 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=43.4
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCcc
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 124 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~ 124 (381)
+..+++.+.+++.+.|.+|.|||--.++.|..++- + ++ +++|.||-|.-+|-.
T Consensus 65 ~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~-~--~~--~p~i~iPTT~~t~s~ 117 (339)
T cd08173 65 EEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAY-K--LG--IPFISVPTAASHDGI 117 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHH-h--cC--CCEEEecCcccCCcc
Confidence 35788999999999999999999999999888873 2 34 569999999876543
No 70
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=74.49 E-value=5.3 Score=40.16 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=42.5
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHc-------------CCCceEeeeccccccC
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDND 122 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~-------------g~~i~vIgIPkTIDND 122 (381)
+..+++++.+++.+.|.+|-|||--.++.|+.++-.+... .-++++|.||-|--.+
T Consensus 67 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtg 135 (370)
T cd08551 67 SNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTG 135 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcch
Confidence 3578899999999999999999999999998876543111 0136789999886444
No 71
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=74.38 E-value=6.2 Score=39.26 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=40.2
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 120 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTID 120 (381)
..+++++.+++.+.|.+|-|||--.++.|..++-.. ++++|.||-|--
T Consensus 65 ~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtat 112 (337)
T cd08177 65 VTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLS 112 (337)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCch
Confidence 578899999999999999999999999998886432 466999998853
No 72
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=74.02 E-value=4.2 Score=40.96 Aligned_cols=65 Identities=18% Similarity=0.397 Sum_probs=50.3
Q ss_pred chHHHHHHHHHcCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHH
Q 016855 68 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 138 (381)
Q Consensus 68 ~~~~i~~~l~~~~I---d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~ 138 (381)
..+++.+.+.+.+. |.+|.|||--+++.|..++-. -.+|. +.+.||.|. +...|.++|--|++|.
T Consensus 61 ~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~-~~rgi--~~i~iPTTl---la~vds~ig~k~~vn~ 128 (346)
T cd08196 61 AVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASI-YMRGV--SWSFVPTTL---LAQVDSCIGSKSSINV 128 (346)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHH-HHcCC--CeEEecccH---HHhhhccccccceecC
Confidence 47789999999999 899999999888888777543 23564 589999975 2355777787777774
No 73
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=74.01 E-value=7.1 Score=39.44 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=40.2
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcC--------------CCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG--------------LQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g--------------~~i~vIgIPkTI 119 (381)
..+++++.+++.++|.+|-|||--+++.|..++-....-+ -.+++|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 136 (374)
T cd08189 71 NVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTA 136 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence 4788999999999999999999999999987765432111 125789999875
No 74
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=72.66 E-value=6.2 Score=39.81 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=44.6
Q ss_pred chHHHHHHHHHcCCc---EEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChH
Q 016855 68 DTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 133 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFd 133 (381)
..+++.+.+.++++| .+|.|||--.++.|..++-.. .+| +++|.||-|. +..+|.++|--
T Consensus 69 ~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~-~rg--ip~I~IPTTl---la~~da~i~~k 131 (355)
T cd08197 69 TLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL-FRG--IRLVHIPTTL---LAQSDSVLSLK 131 (355)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CCEEEecCcc---cccccccccCc
Confidence 478899999999999 999999988888887665422 234 5699999985 34455444443
No 75
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=72.65 E-value=67 Score=29.72 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=28.9
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
..++++.|...++|++|+.+.+.+... ...+++.++++ +||.+-..+
T Consensus 46 ~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~~i--PvV~~~~~~ 92 (275)
T cd06320 46 QLSIAENMINKGYKGLLFSPISDVNLV--PAVERAKKKGI--PVVNVNDKL 92 (275)
T ss_pred HHHHHHHHHHhCCCEEEECCCChHHhH--HHHHHHHHCCC--eEEEECCCC
Confidence 456788899999999998766543211 12244555564 577664433
No 76
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=72.56 E-value=8 Score=39.22 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=31.2
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE 102 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~ 102 (381)
..+++++.+++++.|.+|.|||--.++.|..++-.
T Consensus 72 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 106 (383)
T cd08186 72 QVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAIL 106 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 57899999999999999999999999999877654
No 77
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=72.42 E-value=4.4 Score=39.14 Aligned_cols=52 Identities=27% Similarity=0.474 Sum_probs=34.6
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHH-HHHHHHHHcCCCceEee-eccccccCcc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LIYKEVEKRGLQVAVAG-IPKTIDNDIA 124 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~~~~~g~~i~vIg-IPkTIDNDi~ 124 (381)
+....++...+.+.|.+|++|||||+..+. .|.+ .. +.+.+| ||.==-||+.
T Consensus 45 ~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 45 DAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDFA 98 (293)
T ss_pred cHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHHH
Confidence 344445555667899999999999998754 3322 11 123455 8987788886
No 78
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=72.34 E-value=5.2 Score=39.98 Aligned_cols=51 Identities=18% Similarity=0.345 Sum_probs=42.5
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccC
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 122 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDND 122 (381)
+..+++.+.+++.+.|.+|-|||--.++.|..++-.. + +++|.||-|--.+
T Consensus 63 ~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~---~--~p~i~VPTT~gtg 113 (347)
T cd08172 63 ENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL---G--VPVITVPTLAATC 113 (347)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh---C--CCEEEecCccccC
Confidence 3578999999999999999999999999998887543 3 5699999997433
No 79
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=72.26 E-value=8.2 Score=39.37 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=30.2
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 100 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~ 100 (381)
..+++++.++++++|.+|-|||--+++.|..++
T Consensus 66 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 66 TVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 478899999999999999999999999998776
No 80
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=71.53 E-value=84 Score=30.37 Aligned_cols=25 Identities=0% Similarity=0.206 Sum_probs=20.0
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQ 93 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~ 93 (381)
..+.++.+...++|++++.+.+.+-
T Consensus 104 ~~~~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 104 QRAYLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCH
Confidence 4467788999999999999886544
No 81
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=71.48 E-value=4.2 Score=42.89 Aligned_cols=108 Identities=19% Similarity=0.298 Sum_probs=71.3
Q ss_pred CEEEEEccchhhhhcCCeEeCChhhHhchhhc--CCccccccCC---C--CchHHHHHHHHHcCC---cEEEEEcCCCcH
Q 016855 24 NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKR--GGTILRTSRG---G--HDTNKIVDNIEDRGI---NQVYIIGGDGTQ 93 (381)
Q Consensus 24 ~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~--GGt~LGtsR~---~--~~~~~i~~~l~~~~I---d~LvvIGGdgS~ 93 (381)
+.|+-..++...+ .+..+-++.+.|..+... .-..+--.-. + +..+++.+.|.++++ |.+|.|||--..
T Consensus 172 ~~v~~~~~~~~~~-~~~~~ii~d~~v~~ly~~~l~~~~~~~~~ge~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~ 250 (488)
T PRK13951 172 HLVKIILGGFKRV-RNEELVFTTERVEKIYGRYLPENRLLFPDGEEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALT 250 (488)
T ss_pred eeEEEeccccccC-CCeEEEEECCcHHHHHHHhhcccEEEecCCCCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHH
Confidence 4555444444444 245555666666543322 0011100000 1 247889999999999 999999998888
Q ss_pred HHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHH
Q 016855 94 KGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 138 (381)
Q Consensus 94 ~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~ 138 (381)
+.|.-.+... .+| ++.|.||-|+ +...|.|+|-=||+|.
T Consensus 251 D~agf~A~~y-~RG--i~~i~vPTTl---la~vDssiggK~~vn~ 289 (488)
T PRK13951 251 DFTGFVASTF-KRG--VGLSFYPTTL---LAQVDASVGGKNAIDF 289 (488)
T ss_pred HHHHHHHHHH-hcC--CCeEecCccH---HHHHhcCCCCCeeeeC
Confidence 8887766543 346 5599999998 5778999999999986
No 82
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=71.39 E-value=77 Score=28.45 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=49.2
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~ 147 (381)
...+.++.+.+.++|++|+.+.+.+... ..+.+.+.+ +++|.+..+.++ .....++++|.. +....+.+.+.
T Consensus 43 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~~--ip~v~~~~~~~~--~~~~~~v~~d~~-~~~~~~~~~l~ 114 (264)
T cd01537 43 KQLSALENLIARGVDGIIIAPSDLTAPT---IVKLARKAG--IPVVLVDRDIPD--GDRVPSVGSDNE-QAGYLAGEHLA 114 (264)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCcchh---HHHHhhhcC--CCEEEeccCCCC--CcccceEecCcH-HHHHHHHHHHH
Confidence 3566777788889999999988776644 223344445 457877666554 122345666543 33344444444
Q ss_pred HhhhhcCcceEEEEe
Q 016855 148 VEVESVENGVGIVKL 162 (381)
Q Consensus 148 ~tA~S~~~rv~iVEv 162 (381)
... + +++.++--
T Consensus 115 ~~g--~-~~i~~i~~ 126 (264)
T cd01537 115 EKG--H-RRIALLAG 126 (264)
T ss_pred Hhc--C-CcEEEEEC
Confidence 332 4 46777643
No 83
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=71.21 E-value=83 Score=28.71 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=42.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC-CCCChHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD-~tiGFdTA~~~~~~ai~~l~ 147 (381)
....++.+...++|++++.+.+..... + +.+.+.++ +||.+ |+|++... .++|+|- .+....+.+.+.
T Consensus 44 ~~~~~~~l~~~~~dgiii~~~~~~~~~---l-~~~~~~~i--pvV~~----~~~~~~~~~~~v~~d~-~~~g~~~~~~l~ 112 (267)
T cd06283 44 EKEYLESLLAYQVDGLIVNPTGNNKEL---Y-QRLAKNGK--PVVLV----DRKIPELGVDTVTLDN-YEAAKEAVDHLI 112 (267)
T ss_pred HHHHHHHHHHcCcCEEEEeCCCCChHH---H-HHHhcCCC--CEEEE----cCCCCCCCCCEEEecc-HHHHHHHHHHHH
Confidence 446678888999999999987754322 2 33344454 46654 55544322 3566543 122333344443
Q ss_pred HhhhhcCcceEEE
Q 016855 148 VEVESVENGVGIV 160 (381)
Q Consensus 148 ~tA~S~~~rv~iV 160 (381)
.. .| +++.++
T Consensus 113 ~~--g~-~~i~~l 122 (267)
T cd06283 113 EK--GY-ERILFV 122 (267)
T ss_pred Hc--CC-CcEEEE
Confidence 22 44 456665
No 84
>PRK00861 putative lipid kinase; Reviewed
Probab=70.71 E-value=8.2 Score=37.57 Aligned_cols=68 Identities=25% Similarity=0.426 Sum_probs=46.3
Q ss_pred CCchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHH
Q 016855 66 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 141 (381)
Q Consensus 66 ~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ 141 (381)
..+..++++...+.+.|.++++|||||+..+. +.+... ++++--||.===||+. .++|.+.-...+.+
T Consensus 43 ~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv---~~l~~~--~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~ 110 (300)
T PRK00861 43 EIGADQLAQEAIERGAELIIASGGDGTLSAVA---GALIGT--DIPLGIIPRGTANAFA---AALGIPDTIEEACR 110 (300)
T ss_pred CCCHHHHHHHHHhcCCCEEEEECChHHHHHHH---HHHhcC--CCcEEEEcCCchhHHH---HHcCCCCCHHHHHH
Confidence 44677777777788899999999999987653 222222 3557778987788886 35666543443333
No 85
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=70.58 E-value=86 Score=28.67 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=43.5
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC-CCCChH--HHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFD--TAVEEAQRAINA 145 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD-~tiGFd--TA~~~~~~ai~~ 145 (381)
..++++.+...++|++++.+.+.+-. ..+.+.+.++ ++|.+ |++.+.+. .++++| .+.+.+++.+.+
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~~i--pvV~~----~~~~~~~~~~~v~~d~~~~~~~~~~~l~~ 113 (268)
T cd06298 44 ELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRSPT--PVVLA----GSVDEDNELPSVNIDYKKAAFEATELLIK 113 (268)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcCCC--CEEEE----ccccCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 45677788889999999998654432 2233444454 46655 44333322 234443 555555555433
Q ss_pred HHHhhhhcCcceEEEE
Q 016855 146 AHVEVESVENGVGIVK 161 (381)
Q Consensus 146 l~~tA~S~~~rv~iVE 161 (381)
..| +++.++-
T Consensus 114 -----~g~-~~i~~l~ 123 (268)
T cd06298 114 -----NGH-KKIAFIS 123 (268)
T ss_pred -----cCC-ceEEEEe
Confidence 355 4677764
No 86
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=70.53 E-value=8.3 Score=39.22 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=30.8
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 101 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~ 101 (381)
..+++++.+++.+.|.+|-|||--+++.|+.++-
T Consensus 76 ~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~ 109 (383)
T PRK09860 76 NVAAGLKLLKENNCDSVISLGGGSPHDCAKGIAL 109 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHH
Confidence 5789999999999999999999999999988764
No 87
>PLN02834 3-dehydroquinate synthase
Probab=70.48 E-value=4.8 Score=41.77 Aligned_cols=63 Identities=25% Similarity=0.375 Sum_probs=46.1
Q ss_pred chHHHHHHHHHcCCc---EEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH
Q 016855 68 DTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 136 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~ 136 (381)
..+++++.+.++++| .+|.|||--.++.|..++-.. .+| +++|.||-|. +..+|.++|--+++
T Consensus 148 ~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y-~rg--iplI~VPTTl---lA~vDss~ggK~~i 213 (433)
T PLN02834 148 TLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY-QRG--VNFVQIPTTV---MAQVDSSVGGKTGV 213 (433)
T ss_pred HHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCcC---CeEEecCCCceeEE
Confidence 467888899999998 999999999998887665322 235 5699999995 44455555544444
No 88
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=70.33 E-value=9.8 Score=38.45 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=30.7
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 101 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~ 101 (381)
..+++++.+++.++|.+|-|||--+++.|+.++-
T Consensus 69 ~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~ 102 (375)
T cd08179 69 TVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWI 102 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHH
Confidence 4788999999999999999999999999988763
No 89
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=70.13 E-value=9.5 Score=38.55 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=39.5
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHH-------------cCCCceEeeeccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKT 118 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~-------------~g~~i~vIgIPkT 118 (381)
..+++++.++++++|.+|-|||--.++.|+.++-.+.. ....+++|.||-|
T Consensus 68 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 68 SVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 47889999999999999999999999999877522110 1123679999988
No 90
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=69.94 E-value=9.1 Score=39.13 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=30.5
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 101 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~ 101 (381)
..+++++.+++.+.|.+|-|||--+++.|+.++-
T Consensus 94 ~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~ 127 (395)
T PRK15454 94 DVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVAL 127 (395)
T ss_pred HHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHH
Confidence 4778999999999999999999999999987754
No 91
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=69.87 E-value=7.2 Score=38.45 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=42.0
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccC
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 122 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDND 122 (381)
..+++++.+++.+.|.+|.|||--.++.|..++-.+. ++ +++|.||-|.-.+
T Consensus 66 ~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~~--~p~i~iPTt~~tg 117 (332)
T cd07766 66 EVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-RG--LPIIIVPTTAATG 117 (332)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-CC--CCEEEEeCCCchh
Confidence 5788999999999999999999999999988765432 24 5699999886543
No 92
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=69.55 E-value=9.9 Score=38.40 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=39.9
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHc-------------CCCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~-------------g~~i~vIgIPkTI 119 (381)
..+++++.+++.++|.+|-|||--.++.|..++-..... ..++++|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 71 VVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 578899999999999999999999999998776432110 1235688888774
No 93
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=69.45 E-value=92 Score=29.77 Aligned_cols=25 Identities=8% Similarity=0.323 Sum_probs=20.1
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQ 93 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~ 93 (381)
..++++.|...++|++|+.+.+.+.
T Consensus 101 ~~~~~~~l~~~~vdGiI~~~~~~~~ 125 (327)
T PRK10423 101 MNRNLETLMQKRVDGLLLLCTETHQ 125 (327)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcch
Confidence 4467788899999999999877543
No 94
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=69.19 E-value=1e+02 Score=29.01 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=28.8
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
...++++.+...++|++++.+.+.+.. ..+.+.+.+.|+ +||.+
T Consensus 43 ~~~~~i~~~~~~~vdgiii~~~~~~~~--~~~l~~l~~~~i--pvV~~ 86 (288)
T cd01538 43 KQISQIENMIAKGVDVLVIAPVDGEAL--ASAVEKAADAGI--PVIAY 86 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhH--HHHHHHHHHCCC--CEEEE
Confidence 345778888899999999988765431 223344555564 46754
No 95
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=69.12 E-value=10 Score=38.48 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=38.9
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHc---------------CCCceEeeeccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR---------------GLQVAVAGIPKT 118 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~---------------g~~i~vIgIPkT 118 (381)
..+++++.+++.+.|.+|-|||--.++.|+.++-....- ...+++|.||-|
T Consensus 74 ~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 74 VVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 477899999999999999999999999997765322110 113678889887
No 96
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=69.08 E-value=11 Score=37.69 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=45.8
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 136 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~ 136 (381)
+..+++.+.+++.+.|.+|.|||--.++.|..++ + .+| +++|.||-|.- ||..++-.+++
T Consensus 74 ~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~--~rg--ip~I~IPTT~~-----tds~~s~~a~i 133 (350)
T PRK00843 74 EEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-Y--RLG--IPFISVPTAAS-----HDGIASPRASI 133 (350)
T ss_pred HHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-H--hcC--CCEEEeCCCcc-----CCcccCCceEE
Confidence 3578899999999999999999998898888776 2 235 56999999963 45455544444
No 97
>PRK12361 hypothetical protein; Provisional
Probab=68.71 E-value=8.1 Score=41.10 Aligned_cols=53 Identities=23% Similarity=0.371 Sum_probs=38.6
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCcc
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 124 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~ 124 (381)
.+..++++...+.+.|.+|++|||||+..+. +.+.+. ++++--||.==-||+.
T Consensus 284 ~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~---~~l~~~--~~~lgiiP~GTgNdfA 336 (547)
T PRK12361 284 ISAEALAKQARKAGADIVIACGGDGTVTEVA---SELVNT--DITLGIIPLGTANALS 336 (547)
T ss_pred ccHHHHHHHHHhcCCCEEEEECCCcHHHHHH---HHHhcC--CCCEEEecCCchhHHH
Confidence 4566777777778899999999999987653 222222 3557778987788886
No 98
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=68.46 E-value=11 Score=39.69 Aligned_cols=99 Identities=16% Similarity=0.261 Sum_probs=55.9
Q ss_pred CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCc---cccccCCCCchHHHHHHHHHcCCcEEEEEcCCCcHHHHH-HH
Q 016855 24 NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGT---ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LI 99 (381)
Q Consensus 24 ~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt---~LGtsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~-~L 99 (381)
.+++-|.|=..| ++.-..+-+..+..+....|- +.-|.+ ..+..++++.+...+.|.+|++|||||+.-+. -|
T Consensus 112 kr~lvIvNP~SG--kg~a~k~~~~~v~~~L~~~gi~~~v~~T~~-~ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL 188 (481)
T PLN02958 112 KRLLVFVNPFGG--KKSASKIFFDVVKPLLEDADIQLTIQETKY-QLHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGL 188 (481)
T ss_pred cEEEEEEcCCCC--CcchhHHHHHHHHHHHHHcCCeEEEEeccC-ccHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHH
Confidence 455555555544 222112212234444444441 233332 24566677777777899999999999987542 33
Q ss_pred HHHH-HHcCCCceEeeeccccccCccC
Q 016855 100 YKEV-EKRGLQVAVAGIPKTIDNDIAV 125 (381)
Q Consensus 100 ~~~~-~~~g~~i~vIgIPkTIDNDi~~ 125 (381)
.+.- .+.+.++++--||.==-||+.-
T Consensus 189 ~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 189 LEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred hhCccccccccCceEEecCcCcchhhh
Confidence 2110 0013457788899999999964
No 99
>PRK15138 aldehyde reductase; Provisional
Probab=68.35 E-value=8.8 Score=39.11 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=30.6
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 101 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~ 101 (381)
..+++++.+++.+.|.+|-|||--+++.|+.++-
T Consensus 73 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~ 106 (387)
T PRK15138 73 TLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAA 106 (387)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHH
Confidence 5788999999999999999999999999988764
No 100
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=68.06 E-value=9.9 Score=38.16 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=39.6
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHH------------cCCCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------------RGLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~------------~g~~i~vIgIPkTI 119 (381)
..+++++.+++.+.|.+|-|||--+++.|+.++-.+.. ....+++|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 71 TIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 57889999999999999999999999999876532110 01136788898774
No 101
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=67.78 E-value=9.1 Score=38.72 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=30.4
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 101 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~ 101 (381)
..+++++.+++.++|.+|-|||--.++.|+.++-
T Consensus 71 ~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~ 104 (380)
T cd08185 71 TVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAF 104 (380)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHH
Confidence 4778899999999999999999999999987764
No 102
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=67.20 E-value=13 Score=36.17 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=42.5
Q ss_pred ccCCCCchHHHHHHHHHcCCcEEEEEcCCCcHHHHH-HHHHHHHHcCCCceEeeeccccccCcc
Q 016855 62 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LIYKEVEKRGLQVAVAGIPKTIDNDIA 124 (381)
Q Consensus 62 tsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~~~~~g~~i~vIgIPkTIDNDi~ 124 (381)
+++...+.+++++.+.+.+.|.+|++|||||+..+. .|.+. ..+.++++.-||.==-||+.
T Consensus 34 ~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 34 VTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHH
Confidence 445455677777777788899999999999987653 33221 11233457779988889985
No 103
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=66.84 E-value=12 Score=37.72 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=39.6
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHH-----------------cCCCceEeeeccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-----------------RGLQVAVAGIPKT 118 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~-----------------~g~~i~vIgIPkT 118 (381)
..+++++.++++++|.+|-|||--+++.|..++-.+.. ....+++|.||-|
T Consensus 65 ~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 132 (367)
T cd08182 65 DLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTT 132 (367)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCC
Confidence 47789999999999999999999999999887653211 0123678999887
No 104
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=66.70 E-value=12 Score=37.83 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=30.4
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 101 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~ 101 (381)
..+++++.+++.+.|.+|-|||--.++.|+.++-
T Consensus 73 ~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~ 106 (377)
T cd08176 73 NVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGI 106 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHH
Confidence 4788999999999999999999999999987763
No 105
>PRK13057 putative lipid kinase; Reviewed
Probab=66.16 E-value=9.1 Score=37.03 Aligned_cols=52 Identities=27% Similarity=0.472 Sum_probs=36.2
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCcc
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 124 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~ 124 (381)
.+..++++. ...+.|.+|++|||||+..+. +.+... ++++-.||.===||+.
T Consensus 38 ~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~---~~l~~~--~~~lgiiP~GT~Ndfa 89 (287)
T PRK13057 38 DDLSEVIEA-YADGVDLVIVGGGDGTLNAAA---PALVET--GLPLGILPLGTANDLA 89 (287)
T ss_pred HHHHHHHHH-HHcCCCEEEEECchHHHHHHH---HHHhcC--CCcEEEECCCCccHHH
Confidence 345566555 356789999999999987653 222222 4568889988888885
No 106
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=65.87 E-value=12 Score=37.81 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=39.3
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 118 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkT 118 (381)
..+++++.+++++.|.+|-|||--.++.|..++-. .+ +++|.||-|
T Consensus 72 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTt 117 (366)
T PRK09423 72 EIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY---LG--VPVVIVPTI 117 (366)
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH---cC--CCEEEeCCc
Confidence 57889999999999999999999999998887632 24 669999998
No 107
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=65.64 E-value=11 Score=37.77 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=30.3
Q ss_pred chHHHHHHHHHc---CCcEEEEEcCCCcHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDR---GINQVYIIGGDGTQKGAALIYKE 102 (381)
Q Consensus 68 ~~~~i~~~l~~~---~Id~LvvIGGdgS~~~a~~L~~~ 102 (381)
..+++++.++++ ++|.+|-|||--+++.|+.++-.
T Consensus 66 ~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~ 103 (347)
T cd08184 66 QIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNM 103 (347)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 477888889988 99999999999999999887643
No 108
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=65.51 E-value=11 Score=37.62 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=42.0
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCc
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 123 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi 123 (381)
+..+++++.+++.+.|.+|-|||--.++.|..++.. .+ +++|.||-|--+|-
T Consensus 64 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~---~~--~p~i~VPTtagtgs 115 (349)
T cd08550 64 EEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR---LD--KPIVIVPTIASTCA 115 (349)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH---cC--CCEEEeCCccccCc
Confidence 357889999999999999999999999999888743 24 56999999854443
No 109
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=65.37 E-value=16 Score=32.87 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=39.1
Q ss_pred CCchHHHHHHHHH---cCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccc
Q 016855 66 GHDTNKIVDNIED---RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 118 (381)
Q Consensus 66 ~~~~~~i~~~l~~---~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkT 118 (381)
.-|..-+++.++- .++|.++++-||+-+.- |.+.++++|..+-++|.|+.
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ 140 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPG 140 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCC
Confidence 3477777777766 69999999999999974 56667778988878887654
No 110
>PRK13059 putative lipid kinase; Reviewed
Probab=65.22 E-value=13 Score=36.33 Aligned_cols=68 Identities=26% Similarity=0.404 Sum_probs=42.8
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA 142 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~a 142 (381)
+.+.+. ...+.+.|.+|++|||||+..+. +.+.+.+.++++--||.==-||+. .++|...-...+++.
T Consensus 45 ~~~~~~-~~~~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~ 112 (295)
T PRK13059 45 DLKNAF-KDIDESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA---KFLGMPTDIGEACEQ 112 (295)
T ss_pred hHHHHH-HHhhcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH---HHhCCCCCHHHHHHH
Confidence 344444 33456889999999999987643 222233445667889988888886 355654434444333
No 111
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=64.99 E-value=11 Score=38.48 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=50.3
Q ss_pred hHHHHHHHHHcCCc---EEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHH
Q 016855 69 TNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 139 (381)
Q Consensus 69 ~~~i~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~ 139 (381)
.+++.+.+.+++.+ .+|.|||-=.++.|..++-. ..+| +++|.||-| =+..+|.++|--+++|..
T Consensus 85 v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~rG--ip~I~IPTT---lla~vDs~~g~k~~vn~~ 152 (369)
T cd08198 85 VEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGINAF 152 (369)
T ss_pred HHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcCC--CCEEEECCC---chhhhCCCeeeeecccCC
Confidence 56888999999998 99999998888888777543 2345 569999999 346677777777777663
No 112
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=64.83 E-value=6.3 Score=38.41 Aligned_cols=44 Identities=34% Similarity=0.499 Sum_probs=33.1
Q ss_pred cCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHH
Q 016855 79 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 137 (381)
Q Consensus 79 ~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~ 137 (381)
...+.++++|||||+-.|.+... ..+++|+||= --++||-|-.+
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin----------~G~lGFLt~~~ 97 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGIN----------LGHLGFLTDFE 97 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEe----------CCCcccccccC
Confidence 57899999999999988776643 2346788873 23788888776
No 113
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=63.92 E-value=13 Score=37.73 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=38.3
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHH---------------cCCCceEeeeccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK---------------RGLQVAVAGIPKT 118 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~---------------~g~~i~vIgIPkT 118 (381)
..+++++.+++.+.|.+|-|||--+++.|+.++-.... ..-.+++|.||-|
T Consensus 75 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 75 VVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 46788899999999999999999999999766522110 0113678999988
No 114
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=63.34 E-value=86 Score=28.74 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=26.9
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
....++.|...++|++++++.+.+.... +.+.++++ ++|.+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~~~~----~~l~~~~i--Pvv~~ 84 (268)
T cd06273 44 EYAQARKLLERGVDGLALIGLDHSPALL----DLLARRGV--PYVAT 84 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHH----HHHHhCCC--CEEEE
Confidence 4467788889999999999876543322 33444554 46654
No 115
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=63.18 E-value=1.2e+02 Score=27.67 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=44.2
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC-CCCCChHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t-D~tiGFdTA~~~~~~ai~~l~ 147 (381)
...+++.+...++|++|+.+.+.+... .+.+.+.+++ +|. +|++.+.. -.+++.|-. ..+..+.+.+.
T Consensus 44 ~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~ip--vV~----~~~~~~~~~~~~v~~d~~-~~~~~~~~~l~ 112 (265)
T cd06299 44 ENRYLDNLLSQRVDGIIVVPHEQSAEQ----LEDLLKRGIP--VVF----VDREITGSPIPFVTSDPQ-PGMTEAVSLLV 112 (265)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCChHH----HHHHHhCCCC--EEE----EecccCCCCCCEEEECcH-HHHHHHHHHHH
Confidence 456788899999999999987765422 2445555654 663 45554321 124555532 22334444443
Q ss_pred HhhhhcCcceEEE
Q 016855 148 VEVESVENGVGIV 160 (381)
Q Consensus 148 ~tA~S~~~rv~iV 160 (381)
. ..| +++.++
T Consensus 113 ~--~g~-~~I~~i 122 (265)
T cd06299 113 A--LGH-KKIGYI 122 (265)
T ss_pred H--cCC-CcEEEE
Confidence 2 245 456665
No 116
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=62.96 E-value=1.4e+02 Score=28.46 Aligned_cols=41 Identities=15% Similarity=0.344 Sum_probs=25.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
..++++.|..+++|++|+.+-+.+.. +.+.+.+.++| +|.+
T Consensus 104 ~~~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~iP--vV~~ 144 (329)
T TIGR01481 104 EVQVLNTLLSKQVDGIIFMGGTITEK----LREEFSRSPVP--VVLA 144 (329)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhcCCC--EEEE
Confidence 34567888899999999987653322 22334445644 6644
No 117
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=62.42 E-value=15 Score=37.10 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=30.6
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHH
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 101 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~ 101 (381)
+..+++++.+++.+.|.+|-|||--.++.|..++-
T Consensus 62 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~ 96 (374)
T cd08183 62 ELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAA 96 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHH
Confidence 35788999999999999999999999999987754
No 118
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=61.74 E-value=26 Score=34.46 Aligned_cols=108 Identities=20% Similarity=0.232 Sum_probs=62.9
Q ss_pred EEEEEccchhhhhcCCeEeCChhhHh-chhhcCCccc--cccCCCCchHHHHHHHHHcCCcEEEEEcCCCcHHH-HHHHH
Q 016855 25 SLIEFQGGYRGFYSKNTLTLSPKVVN-DIHKRGGTIL--RTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG-AALIY 100 (381)
Q Consensus 25 ~V~G~~~G~~GL~~~~~~~L~~~~v~-~i~~~GGt~L--GtsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~-a~~L~ 100 (381)
++.-+.|-..| ++... -.+..+. .+...|.+.. =|... -+..++++.+...+.|.+|+.|||||... ++-|+
T Consensus 4 ~~~~i~Np~sG--~~~~~-~~~~~~~~~l~~~g~~~~~~~t~~~-g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~ 79 (301)
T COG1597 4 KALLIYNPTSG--KGKAK-KLLREVEELLEEAGHELSVRVTEEA-GDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLA 79 (301)
T ss_pred eEEEEEccccc--ccchh-hHHHHHHHHHHhcCCeEEEEEeecC-ccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHh
Confidence 45556666666 22222 2233333 3444444321 11111 36788888888889999999999999874 44554
Q ss_pred HHHHHcCCCceEeeeccccccCccCCCCCCChHH-HHHHHHHHHH
Q 016855 101 KEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT-AVEEAQRAIN 144 (381)
Q Consensus 101 ~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdT-A~~~~~~ai~ 144 (381)
+ .+.+. +--||.===||+. +++|... ....+.+.+.
T Consensus 80 ~----~~~~~-LgilP~GT~NdfA---r~Lgip~~~~~~Al~~i~ 116 (301)
T COG1597 80 G----TDDPP-LGILPGGTANDFA---RALGIPLDDIEAALELIK 116 (301)
T ss_pred c----CCCCc-eEEecCCchHHHH---HHcCCCchhHHHHHHHHH
Confidence 3 33332 5567887778875 3566665 3544444443
No 119
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=61.20 E-value=21 Score=31.98 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=12.0
Q ss_pred cccccCCCCchHHHHHHHHHcCCcE
Q 016855 59 ILRTSRGGHDTNKIVDNIEDRGINQ 83 (381)
Q Consensus 59 ~LGtsR~~~~~~~i~~~l~~~~Id~ 83 (381)
+.||..+.+..+++++.|++++|++
T Consensus 8 IMGS~SD~~~mk~Aa~~L~~fgi~y 32 (162)
T COG0041 8 IMGSKSDWDTMKKAAEILEEFGVPY 32 (162)
T ss_pred EecCcchHHHHHHHHHHHHHcCCCe
Confidence 4455443333445555555555554
No 120
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=60.76 E-value=15 Score=37.25 Aligned_cols=54 Identities=9% Similarity=0.139 Sum_probs=39.8
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHc-------------CCCceEeeecccccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDN 121 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~-------------g~~i~vIgIPkTIDN 121 (381)
..+++++.+++.+.|++|-|||--.++.|+.++-.+... ...+++|.||-|--.
T Consensus 74 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagT 140 (382)
T cd08187 74 TVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAAT 140 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCch
Confidence 577889999999999999999999999988765422110 123578888876543
No 121
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=60.07 E-value=1.4e+02 Score=27.51 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=19.5
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCC
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGD 90 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGd 90 (381)
+...++++.|...++|++++.+.+
T Consensus 43 ~~~~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 43 ADYEPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcc
Confidence 345578888999999999998755
No 122
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=59.74 E-value=20 Score=36.04 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=30.7
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE 102 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~ 102 (381)
..+++++.+++.+.|.+|-|||--.++.|+.++-.
T Consensus 69 ~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~ 103 (370)
T cd08192 69 AVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALM 103 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence 57888999999999999999999999999877654
No 123
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=59.31 E-value=17 Score=36.22 Aligned_cols=47 Identities=13% Similarity=0.326 Sum_probs=39.7
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
..+++.+..++.+.|.+|-|||--+++.|+.++-.+ + +++|.||-|-
T Consensus 66 ~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~---~--~p~i~VPTt~ 112 (345)
T cd08171 66 NVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKL---G--KPVFTFPTIA 112 (345)
T ss_pred HHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHc---C--CCEEEecCcc
Confidence 477888999999999999999999999998886542 4 5699999874
No 124
>PRK10586 putative oxidoreductase; Provisional
Probab=58.88 E-value=12 Score=37.96 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=47.6
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChH
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 133 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFd 133 (381)
++.+++.+..+ .+.|.+|-|||--+++.|+.++.. .++++|.||-|--+|-..|-.++-++
T Consensus 74 ~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~~avi~~ 134 (362)
T PRK10586 74 SDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTPLSVWYN 134 (362)
T ss_pred HHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccCceEEEC
Confidence 34666666554 588999999999999999988753 24679999999999887777666665
No 125
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=58.74 E-value=17 Score=37.14 Aligned_cols=64 Identities=25% Similarity=0.388 Sum_probs=48.8
Q ss_pred hHHHHHHHHHcCCc---EEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHH
Q 016855 69 TNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 138 (381)
Q Consensus 69 ~~~i~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~ 138 (381)
.+++.+.+.+++.| .+|.|||-=+++.|..++-. ..+| +++|.||-| =+..+|.++|--++++.
T Consensus 97 v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~rg--ip~I~IPTT---lla~vda~~g~~~~v~~ 163 (389)
T PRK06203 97 VEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGINA 163 (389)
T ss_pred HHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcCC--CCEEEEcCC---CccccCCCccchhheec
Confidence 78899999999998 99999998888888777532 2345 569999999 33666766666555554
No 126
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=58.39 E-value=20 Score=36.40 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=38.4
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHc-------------CCCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~-------------g~~i~vIgIPkTI 119 (381)
+..++++.+++.+.|.+|-|||--.++.|..++-.+..- +-.+++|.||-|-
T Consensus 67 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 131 (386)
T cd08191 67 ELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTA 131 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCC
Confidence 356778888999999999999999999998876433110 0135688888764
No 127
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=58.26 E-value=13 Score=36.36 Aligned_cols=51 Identities=10% Similarity=0.275 Sum_probs=35.3
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 120 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTID 120 (381)
++++.++.|.+ .+|.+++|||-.|- ...+|++-+++.+.+.-.|-=|.=||
T Consensus 198 ~RQ~a~~~La~-~vD~miVIGg~~Ss-NT~kL~eia~~~~~~t~~Ie~~~el~ 248 (281)
T PF02401_consen 198 NRQEAARELAK-EVDAMIVIGGKNSS-NTRKLAEIAKEHGKPTYHIETADELD 248 (281)
T ss_dssp HHHHHHHHHHC-CSSEEEEES-TT-H-HHHHHHHHHHHCTTCEEEESSGGG--
T ss_pred HHHHHHHHHHh-hCCEEEEecCCCCc-cHHHHHHHHHHhCCCEEEeCCccccC
Confidence 57788888866 69999999999995 45678898888876544444455444
No 128
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.24 E-value=1.5e+02 Score=27.20 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHH-HHHHHHHHHHcCCCceEeee
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKG-AALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~~~~~g~~i~vIgI 115 (381)
+...+.++.|...++|++++.+..-.... .....+.+.++|++ ||.+
T Consensus 42 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ip--vV~i 89 (273)
T cd06292 42 VSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLP--VVLV 89 (273)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCC--EEEE
Confidence 34557889999999999999985422211 11122334455654 6654
No 129
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=58.05 E-value=15 Score=36.58 Aligned_cols=45 Identities=9% Similarity=0.315 Sum_probs=36.5
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 118 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkT 118 (381)
..+++++.+++ +.|.+|-|||--.++.|..++-. ++ +++|.||-|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~---~~--~p~i~IPTT 113 (348)
T cd08175 69 AVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK---TG--IPYISVPTA 113 (348)
T ss_pred HHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh---cC--CCEEEecCc
Confidence 35677777777 99999999999999999888632 24 569999999
No 130
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=58.03 E-value=21 Score=36.42 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=29.4
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 100 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~ 100 (381)
..++.++.+++.+.|.+|.+||--+|+.|+.++
T Consensus 74 ~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~ 106 (377)
T COG1454 74 TVEAGAEVAREFGPDTIIALGGGSVIDAAKAIA 106 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 367889999999999999999999999887665
No 131
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=57.93 E-value=1.5e+02 Score=26.99 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=28.4
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
+..++++.+...++|++++.+-+.+. .. .+.+.+.+ +++|.+
T Consensus 43 ~~~~~~~~l~~~~vdgiii~~~~~~~-~~---~~~~~~~~--ipvv~~ 84 (268)
T cd01575 43 REEELLRTLLSRRPAGLILTGLEHTE-RT---RQLLRAAG--IPVVEI 84 (268)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCCH-HH---HHHHHhcC--CCEEEE
Confidence 45678888999999999999987652 22 22233445 457766
No 132
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=57.91 E-value=23 Score=35.50 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=29.1
Q ss_pred chHHHHHHHHHcC--CcEEEEEcCCCcHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRG--INQVYIIGGDGTQKGAALIYK 101 (381)
Q Consensus 68 ~~~~i~~~l~~~~--Id~LvvIGGdgS~~~a~~L~~ 101 (381)
..+++.+.+++.+ .|.+|-|||--.++.|..++-
T Consensus 66 ~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~ 101 (355)
T TIGR03405 66 QLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAV 101 (355)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHH
Confidence 4778888898888 999999999999999877654
No 133
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=57.80 E-value=1.8e+02 Score=27.91 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=40.4
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChH--HHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD--TAVEEAQRAINAA 146 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFd--TA~~~~~~ai~~l 146 (381)
....++.+...++|++|+.+-+.+-. ..+.+.+.++| +|.+- |.+.+..+.++++| .|...+++ .+
T Consensus 108 ~~~~~~~~~~~~vdgiI~~~~~~~~~----~~~~l~~~~iP--vV~~~---~~~~~~~~~~V~~Dn~~~~~~a~~---~L 175 (331)
T PRK14987 108 EQERLESMLSWNIDGLILTERTHTPR----TLKMIEVAGIP--VVELM---DSQSPCLDIAVGFDNFEAARQMTT---AI 175 (331)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCHH----HHHHHHhCCCC--EEEEe---cCCCCCCCceEEeCcHHHHHHHHH---HH
Confidence 34567888899999999987543322 22334445544 66541 22222222345544 23333333 33
Q ss_pred HHhhhhcCcceEEE
Q 016855 147 HVEVESVENGVGIV 160 (381)
Q Consensus 147 ~~tA~S~~~rv~iV 160 (381)
.. ..| +++.++
T Consensus 176 ~~--~Gh-~~I~~i 186 (331)
T PRK14987 176 IA--RGH-RHIAYL 186 (331)
T ss_pred HH--CCC-ceEEEE
Confidence 32 355 467777
No 134
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=57.29 E-value=24 Score=35.70 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=38.5
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHH-------cCC------CceEeeecccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------RGL------QVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~-------~g~------~i~vIgIPkTI 119 (381)
..+++++.+++.+.|.+|-|||--.++.|+.++-.+.. .+. .+++|.||-|-
T Consensus 73 ~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 73 EVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 46778889999999999999999999999766532211 011 25688888775
No 135
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=57.14 E-value=16 Score=30.51 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=37.6
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
.+.+++++..++.++++ +.+|.|-+.-...|++.+.+.|+ .++|-
T Consensus 61 l~~e~I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 61 LNIEAIIDIARKEGADA--IHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp TSHHHHHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred ccHHHHhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 47899999999997776 56999999999999999988884 47764
No 136
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=56.91 E-value=17 Score=36.43 Aligned_cols=64 Identities=23% Similarity=0.412 Sum_probs=49.3
Q ss_pred chHHHHHHHHHcC---CcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHH
Q 016855 68 DTNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 137 (381)
Q Consensus 68 ~~~~i~~~l~~~~---Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~ 137 (381)
..+++.+.+.+++ .|.+|.|||--.++.|..++..+ .+| +++|.||-|. +..+|.++|.-++++
T Consensus 68 ~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTTl---la~~ds~~g~k~~i~ 134 (344)
T cd08169 68 TVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL-FRG--IAFIRVPTTL---LAQSDSGVGGKTGIN 134 (344)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CcEEEecCCc---ccccccCccceEeEe
Confidence 4778888899887 89999999998898888776532 235 5699999993 356677777777666
No 137
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=55.67 E-value=30 Score=34.27 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=50.1
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccC-ccCCC---CCCChHHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND-IAVID---KSFGFDTAVEEAQRAI 143 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDND-i~~tD---~tiGFdTA~~~~~~ai 143 (381)
+++..++.|.+ .+|++++|||-.|-.+ .+|++.+++.+.+.-.|-=|.=||-+ +.+.+ -|=|.+|=-..+-+.+
T Consensus 199 ~RQ~a~~~La~-~vD~miVVGg~~SsNT-~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 199 NRQEAVKELAP-QADLVIVVGSKNSSNS-NRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred HHHHHHHHHHh-hCCEEEEECCCCCccH-HHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHH
Confidence 57778888866 7999999999999866 46778887777665556556666633 22222 2445555444444444
Q ss_pred HHHH
Q 016855 144 NAAH 147 (381)
Q Consensus 144 ~~l~ 147 (381)
+.+.
T Consensus 277 ~~l~ 280 (298)
T PRK01045 277 ARLK 280 (298)
T ss_pred HHHH
Confidence 4443
No 138
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=55.18 E-value=18 Score=36.66 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=45.0
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccC
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 125 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~ 125 (381)
++.+++.+.+.+.+.|.++-|||--+++.|+.++..+ | +++|.||-+=.+|=+.
T Consensus 71 ~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~---~--~pfIsvPT~AS~Da~~ 124 (360)
T COG0371 71 EEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRL---G--LPFISVPTIASTDAIT 124 (360)
T ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHc---C--CCEEEecCcccccccc
Confidence 4678888888888999999999999999999887643 4 5699999988877644
No 139
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=55.16 E-value=28 Score=34.55 Aligned_cols=49 Identities=10% Similarity=0.149 Sum_probs=39.7
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccC
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 122 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDND 122 (381)
..+++++.+++ +.|.+|.|||--.++.|..++ ++ ++ +++|.||-|.-+|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~--~g--ip~I~VPTT~~~~ 117 (332)
T cd08549 69 ELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK--VG--KPFISVPTAPSMD 117 (332)
T ss_pred HHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH--cC--CCEEEeCCCcccC
Confidence 46788888888 999999999999999888777 32 35 5699999998553
No 140
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=54.41 E-value=12 Score=30.93 Aligned_cols=46 Identities=15% Similarity=0.292 Sum_probs=34.6
Q ss_pred CCchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeec
Q 016855 66 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 116 (381)
Q Consensus 66 ~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIP 116 (381)
..+.+.+++.+++++|| |++||-..-+.. =|++.|++.|++ |+|=.
T Consensus 48 ~~d~~~l~~~a~~~~id-lvvvGPE~pL~~--Gl~D~l~~~gi~--vfGP~ 93 (100)
T PF02844_consen 48 ITDPEELADFAKENKID-LVVVGPEAPLVA--GLADALRAAGIP--VFGPS 93 (100)
T ss_dssp TT-HHHHHHHHHHTTES-EEEESSHHHHHT--THHHHHHHTT-C--EES--
T ss_pred CCCHHHHHHHHHHcCCC-EEEECChHHHHH--HHHHHHHHCCCc--EECcC
Confidence 35799999999999999 889998887764 367888888854 77643
No 141
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=54.17 E-value=19 Score=37.58 Aligned_cols=52 Identities=10% Similarity=0.243 Sum_probs=39.5
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 120 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTID 120 (381)
+++.++..|.+..+|.+|||||-.|-.+. +|++.+.++|.+.-.|-=|.=||
T Consensus 350 eRQdA~~~L~~~~vDlmiVVGG~NSSNT~-~L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 350 ERQDAMYKLVEEKLDLMLVVGGWNSSNTS-HLQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCccHH-HHHHHHHHhCCCEEEECCHHHcC
Confidence 57888888877789999999999998664 57788777776644454555555
No 142
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=54.11 E-value=13 Score=39.81 Aligned_cols=64 Identities=22% Similarity=0.400 Sum_probs=48.7
Q ss_pred hHHHHHHHHHcC---CcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHH
Q 016855 69 TNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 138 (381)
Q Consensus 69 ~~~i~~~l~~~~---Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~ 138 (381)
.+++.+.+.+.+ .|.+|.|||--.++.|..++..+ .+| +++|.||-|. ++.+|.|+|.-|+++.
T Consensus 255 v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y-~rG--i~~i~vPTTl---lA~vDss~ggkt~in~ 321 (542)
T PRK14021 255 ANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATW-MRG--IRYVNCPTSL---LAMVDASTGGKTGINT 321 (542)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHH-HcC--CCEEEeCChH---HhhhccccCCceEEEC
Confidence 556778888884 89999999998888888776522 246 5699999997 4677778887776654
No 143
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=54.11 E-value=1.3e+02 Score=31.18 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=76.4
Q ss_pred eEeCChhhHhchhhcCCccccccCCCCchH-HHHHHHHHcCCcE-EEEEcCCC-------------cHHHHHHHHHHHHH
Q 016855 41 TLTLSPKVVNDIHKRGGTILRTSRGGHDTN-KIVDNIEDRGINQ-VYIIGGDG-------------TQKGAALIYKEVEK 105 (381)
Q Consensus 41 ~~~L~~~~v~~i~~~GGt~LGtsR~~~~~~-~i~~~l~~~~Id~-LvvIGGdg-------------S~~~a~~L~~~~~~ 105 (381)
.++-|.+.|+.. ||- |.=.+.|+. .+.+.-++.+++. .+++|||. .|..|..+.+...+
T Consensus 45 LiEAT~NQVnq~---GGY---TGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~ 118 (426)
T PRK15458 45 LIEATSNQVDQF---GGY---TGMTPADFRGFVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVA 118 (426)
T ss_pred EEEecccccccc---CCc---CCCCHHHHHHHHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHH
Confidence 456777777665 664 444445544 4556677889998 99999984 46677777777777
Q ss_pred cCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhh---hcCcceEEE
Q 016855 106 RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE---SVENGVGIV 160 (381)
Q Consensus 106 ~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~---S~~~rv~iV 160 (381)
.|+. -|++=.|++ ..+....+.-++-++.+++.+...-.++. ..+.-+|+|
T Consensus 119 AGF~--kIHLD~Sm~--cagdp~pL~d~~vA~Raa~L~~~aE~~a~~~~~~~~~vYvI 172 (426)
T PRK15458 119 AGFK--KIHLDCSMS--CADDPIPLTDEIVAERAARLAKIAEETCREHFGESDLVYVI 172 (426)
T ss_pred cCCc--eEEecCCCC--CCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 8976 789988887 55555566668889999988876655552 222347777
No 144
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=54.00 E-value=1.8e+02 Score=26.66 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=28.1
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
...++++.|...++|++++.+.+..-.. + +.+.+.++ +||.+
T Consensus 43 ~~~~~i~~l~~~~vdgiii~~~~~~~~~---~-~~~~~~~i--pvV~~ 84 (264)
T cd06274 43 TERETVETLIARQVDALIVAGSLPPDDP---Y-YLCQKAGL--PVVAL 84 (264)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCchHH---H-HHHHhcCC--CEEEe
Confidence 4567888999999999999987643221 2 23444564 46655
No 145
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=53.89 E-value=31 Score=34.11 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHc-CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccC
Q 016855 67 HDTNKIVDNIEDR-GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 125 (381)
Q Consensus 67 ~~~~~i~~~l~~~-~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~ 125 (381)
+..+++.+.+++. +.|.+|-|||--.++.|..++.. ++ +++|.||-|.-+|-..
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~~--~p~i~vPTt~~tgs~~ 115 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---RG--IPLSVPTTNLNDDGIA 115 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---cC--CCEEEecCccccCccc
Confidence 4678888888877 49999999999999998887652 35 5699999998775543
No 146
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=53.82 E-value=29 Score=35.70 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=29.7
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 100 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~ 100 (381)
..+++++.+++.++|.+|-|||--.++.|+.++
T Consensus 68 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 68 SFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 577889999999999999999999999987765
No 147
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=53.57 E-value=2.2e+02 Score=27.63 Aligned_cols=22 Identities=5% Similarity=0.114 Sum_probs=17.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCC
Q 016855 69 TNKIVDNIEDRGINQVYIIGGD 90 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGd 90 (381)
..+.++.|...++|++|+.+..
T Consensus 104 ~~~~i~~l~~~~vdGiIi~~~~ 125 (346)
T PRK10401 104 ERHAIEVLIRQRCNALIVHSKA 125 (346)
T ss_pred HHHHHHHHHhcCCCEEEEeCCC
Confidence 3457788889999999999754
No 148
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=51.82 E-value=32 Score=29.38 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeec
Q 016855 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 116 (381)
Q Consensus 71 ~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIP 116 (381)
.+.+...++++|.++++.||+-+.-+. +.++++|..+-+++.|
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i---~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLV---ERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHH---HHHHHcCCEEEEEccC
Confidence 345666677999999999999887654 4445679888777777
No 149
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.74 E-value=1.9e+02 Score=26.47 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=43.3
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccC-C-CCCCChHHHHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV-I-DKSFGFDTAVEEAQRAINA 145 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~-t-D~tiGFdTA~~~~~~ai~~ 145 (381)
...++++++..+++|++|+.+.+... .....+.+.+.++| +|.+ |.+... . -.++++|-. +....+.+.
T Consensus 45 ~~~~~i~~l~~~~vdgvii~~~~~~~--~~~~l~~~~~~~ip--vV~~----~~~~~~~~~~~~v~~d~~-~~~~~~~~~ 115 (273)
T cd06310 45 GQVNLLENAIARGPDAILLAPTDAKA--LVPPLKEAKDAGIP--VVLI----DSGLNSDIAVSFVATDNV-AAGKLAAEA 115 (273)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCChhh--hHHHHHHHHHCCCC--EEEe----cCCCCCCcceEEEeeChH-HHHHHHHHH
Confidence 34567888889999999998876431 11222334445644 6654 333321 1 134555531 122333333
Q ss_pred HHHhhhhcCcceEEEE
Q 016855 146 AHVEVESVENGVGIVK 161 (381)
Q Consensus 146 l~~tA~S~~~rv~iVE 161 (381)
+..-...| +++.++-
T Consensus 116 l~~~~~g~-~~i~~i~ 130 (273)
T cd06310 116 LAELLGKK-GKVAVIS 130 (273)
T ss_pred HHHHcCCC-ceEEEEe
Confidence 33332345 3577664
No 150
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=51.68 E-value=2e+02 Score=26.56 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=28.2
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCcc
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 124 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~ 124 (381)
..+.++.+.+ ++|+++++..+.+. .....+.+.+.|++ || ++|++.+
T Consensus 48 ~~~~i~~~~~-~vdgiii~~~~~~~--~~~~i~~~~~~~ip--vV----~~~~~~~ 94 (275)
T cd06307 48 LAAALLRLGA-RSDGVALVAPDHPQ--VRAAVARLAAAGVP--VV----TLVSDLP 94 (275)
T ss_pred HHHHHHHHHh-cCCEEEEeCCCcHH--HHHHHHHHHHCCCc--EE----EEeCCCC
Confidence 4466777888 99999999876432 11222444455654 55 3355543
No 151
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=51.59 E-value=1.9e+02 Score=26.35 Aligned_cols=80 Identities=6% Similarity=0.088 Sum_probs=42.0
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 148 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~ 148 (381)
...+.+.+..+++|++++...+..... +.+.+.+.++ ++|.+-..++.+ . ..++|+|- .+.+..+.+.+..
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~~~~~~---~~~~~~~~~i--pvv~i~~~~~~~--~-~~~V~~d~-~~~g~~a~~~l~~ 115 (270)
T cd01545 45 AERVRALLQRSRVDGVILTPPLSDNPE---LLDLLDEAGV--PYVRIAPGTPDP--D-SPCVRIDD-RAAAREMTRHLID 115 (270)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccH---HHHHHHhcCC--CEEEEecCCCCC--C-CCeEEecc-HHHHHHHHHHHHH
Confidence 456778888999999999988743222 2233444564 466553333221 1 12344442 2233334444443
Q ss_pred hhhhcCcceEEE
Q 016855 149 EVESVENGVGIV 160 (381)
Q Consensus 149 tA~S~~~rv~iV 160 (381)
. .| +++.++
T Consensus 116 ~--g~-~~i~~i 124 (270)
T cd01545 116 L--GH-RRIAFI 124 (270)
T ss_pred C--CC-ceEEEE
Confidence 2 45 457766
No 152
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=50.68 E-value=35 Score=31.11 Aligned_cols=56 Identities=13% Similarity=0.239 Sum_probs=39.2
Q ss_pred hhhcCCccccccCCC-CchHHHHHHHHHc-CCcEEEEEcCCCc-HHHHHHHHHHHHHcCC
Q 016855 52 IHKRGGTILRTSRGG-HDTNKIVDNIEDR-GINQVYIIGGDGT-QKGAALIYKEVEKRGL 108 (381)
Q Consensus 52 i~~~GGt~LGtsR~~-~~~~~i~~~l~~~-~Id~LvvIGGdgS-~~~a~~L~~~~~~~g~ 108 (381)
.+..|-.+.|++++. ...++++.|+..+ +|..|++.|-+=. ..+.+.| ..+.++|+
T Consensus 37 ~l~~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl-~aLh~NGi 95 (176)
T PF04208_consen 37 PLDAGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSL-LALHENGI 95 (176)
T ss_pred hhhcCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHH-HHHHHcCC
Confidence 344566899999985 5799999888555 9999988887753 4444545 33455675
No 153
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=49.46 E-value=1.8e+02 Score=30.25 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=74.2
Q ss_pred eEeCChhhHhchhhcCCccccccCCCCchH-HHHHHHHHcCCcE-EEEEcCCC-------------cHHHHHHHHHHHHH
Q 016855 41 TLTLSPKVVNDIHKRGGTILRTSRGGHDTN-KIVDNIEDRGINQ-VYIIGGDG-------------TQKGAALIYKEVEK 105 (381)
Q Consensus 41 ~~~L~~~~v~~i~~~GGt~LGtsR~~~~~~-~i~~~l~~~~Id~-LvvIGGdg-------------S~~~a~~L~~~~~~ 105 (381)
.++-|.+.|+.. ||- |.=.+.|+. .+.+.-++.+++. .+++|||. .|..|..+.+...+
T Consensus 41 LiEAT~NQVnq~---GGY---TGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~ 114 (420)
T TIGR02810 41 LIEATSNQVNQF---GGY---TGMTPADFRDFVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVE 114 (420)
T ss_pred EEEecccccccc---CCc---CCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHH
Confidence 466777777666 664 444445544 4556677889998 99999985 36667777666777
Q ss_pred cCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhh---hcCcceEEE
Q 016855 106 RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE---SVENGVGIV 160 (381)
Q Consensus 106 ~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~---S~~~rv~iV 160 (381)
.|+. -|++=.|++ ..+-..-+.-++-++.+++.+...-.++. ..+.-+|+|
T Consensus 115 AGF~--kIHLD~Sm~--ca~d~~~L~d~~vAeRaa~L~~~aE~~~~~~~~~~~~vYvI 168 (420)
T TIGR02810 115 AGFT--KIHLDASMG--CAGDPAPLDDATVAERAARLCAVAEAAATDRRGETKPVYVI 168 (420)
T ss_pred cCCc--eEEecCCCC--ccCCCccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 7976 799988888 22222455668889999888876655554 222347777
No 154
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=48.82 E-value=15 Score=36.80 Aligned_cols=68 Identities=25% Similarity=0.322 Sum_probs=43.4
Q ss_pred EeCChhhHhchhhcCCcccccc--CCC---CchHHHHHHHHHcCC-----------------cEEEEEcCCCcHHHHH-H
Q 016855 42 LTLSPKVVNDIHKRGGTILRTS--RGG---HDTNKIVDNIEDRGI-----------------NQVYIIGGDGTQKGAA-L 98 (381)
Q Consensus 42 ~~L~~~~v~~i~~~GGt~LGts--R~~---~~~~~i~~~l~~~~I-----------------d~LvvIGGdgS~~~a~-~ 98 (381)
-.|+++.+...+..-||-.|-= ..+ .-.+.+++.|.+.+| |.+|-.||||||-.|. +
T Consensus 45 ~~lspdql~q~L~srgtdv~~ll~~hKvhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aasr 124 (395)
T KOG4180|consen 45 SGLSPDQLLQYLESRGTDVGRLLSKHKVHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAASR 124 (395)
T ss_pred cCCCHHHHHHHHHhcCchHHHHHHHhHHHHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehhhh
Confidence 3577777777776666644421 111 124567777777765 7899999999976554 3
Q ss_pred HHHHHHHcCCCceEeee
Q 016855 99 IYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 99 L~~~~~~~g~~i~vIgI 115 (381)
+.+. ..+||||
T Consensus 125 v~~~------~~PViGv 135 (395)
T KOG4180|consen 125 VIDD------SKPVIGV 135 (395)
T ss_pred hhcc------CCceeee
Confidence 5331 3679987
No 155
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=48.26 E-value=1.6e+02 Score=27.15 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=28.6
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 117 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPk 117 (381)
+.+++.+.+.+.++|++++.+.+..... + +++.+.|+ +||.+-.
T Consensus 52 ~~~~~~~~l~~~~~dgiii~~~~~~~~~---~-~~~~~~~i--pvV~~~~ 95 (275)
T cd06295 52 DRDWLARYLASGRADGVILIGQHDQDPL---P-ERLAETGL--PFVVWGR 95 (275)
T ss_pred hHHHHHHHHHhCCCCEEEEeCCCCChHH---H-HHHHhCCC--CEEEECC
Confidence 3456778888899999999987654321 2 34444564 5775543
No 156
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=47.80 E-value=60 Score=27.34 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=44.5
Q ss_pred ChhhHhchhhcCCccccccC---C-CC-chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecc
Q 016855 45 SPKVVNDIHKRGGTILRTSR---G-GH-DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 117 (381)
Q Consensus 45 ~~~~v~~i~~~GGt~LGtsR---~-~~-~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPk 117 (381)
+..+...|.+.|-=+|-|.- . .+ ...+.++.|.+.++.+|++--|..--.--..+.+.+.++++| ++-+|.
T Consensus 32 e~~d~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lP--li~ip~ 107 (123)
T PF07905_consen 32 EAPDPSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLP--LIEIPW 107 (123)
T ss_pred ecCCHHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCC--EEEeCC
Confidence 33366677554443443322 2 22 367889999999999999955532223334555666666754 899997
No 157
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=47.16 E-value=24 Score=29.73 Aligned_cols=42 Identities=36% Similarity=0.524 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCC---ceEeeeccccccCcc
Q 016855 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQ---VAVAGIPKTIDNDIA 124 (381)
Q Consensus 80 ~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~---i~vIgIPkTIDNDi~ 124 (381)
..|.++++|||||+..+. ..+.+...+ +++.-||.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vv---n~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVL---NALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHH---HHHHhcccccCCCcEEEeCCCChhHHH
Confidence 467999999999988753 222222222 568889987799985
No 158
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=47.16 E-value=2.3e+02 Score=26.06 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=37.5
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC--CCCChHHHHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINA 145 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD--~tiGFdTA~~~~~~ai~~ 145 (381)
...+.++.|...++|++|+...+- .....+.+.+.+ + ++||.+ |++.+..+ .++++|- .+....+.+.
T Consensus 43 ~~~~~i~~l~~~~vDgiIi~~~~~--~~~~~~l~~~~~-~--ipvV~~----~~~~~~~~~~~~V~~D~-~~~g~~a~~~ 112 (271)
T cd06314 43 AQLRMLEDLIAEGVDGIAISPIDP--KAVIPALNKAAA-G--IKLITT----DSDAPDSGRYVYIGTDN-YAAGRTAGEI 112 (271)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCh--hHhHHHHHHHhc-C--CCEEEe----cCCCCccceeEEEccCh-HHHHHHHHHH
Confidence 355778889999999999998652 222223333434 5 446654 45443211 2466652 3333344444
Q ss_pred H
Q 016855 146 A 146 (381)
Q Consensus 146 l 146 (381)
+
T Consensus 113 l 113 (271)
T cd06314 113 M 113 (271)
T ss_pred H
Confidence 3
No 159
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.09 E-value=2.4e+02 Score=26.20 Aligned_cols=125 Identities=12% Similarity=0.130 Sum_probs=61.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccC----CCCCC--ChHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV----IDKSF--GFDTAVEEAQRA 142 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~----tD~ti--GFdTA~~~~~~a 142 (381)
....++.+..+++|++++...+-.. ...+.+.+.+.++| ||.+ |.+++. ...++ -+..|.+.+++.
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~~--~~~~i~~~~~~~iP--vV~~----~~~~~~~~~~~~~~v~~d~~~~g~~~~~~ 115 (272)
T cd06313 44 QVAAIENMASQGWDFIAVDPLGIGT--LTEAVQKAIARGIP--VIDM----GTLIAPLQINVHSFLAPDNYFMGASVAQA 115 (272)
T ss_pred HHHHHHHHHHcCCCEEEEcCCChHH--hHHHHHHHHHCCCc--EEEe----CCCCCCCCCceEEEECCCcHHHHHHHHHH
Confidence 4567888999999999998654211 12223444455654 6654 433321 01123 333455555554
Q ss_pred HHHHHHhhhhcCcceEEEEe-c------CCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhC
Q 016855 143 INAAHVEVESVENGVGIVKL-M------GRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 210 (381)
Q Consensus 143 i~~l~~tA~S~~~rv~iVEv-M------GR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~ 210 (381)
+-+ ....| +++.++.. + -|..||....... . ...++-+.+..++.+ .-.+.+++.++++
T Consensus 116 l~~---~~~g~-~~i~~l~g~~~~~~~~~R~~gf~~~~~~~-~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 181 (272)
T cd06313 116 LCN---AMGGK-GKIAMLQGALGHTGAQGRAQGFNDVIKKY-P-DIEVVDEQPANWDVS---KAARIWETWLTKY 181 (272)
T ss_pred HHH---HcCCC-ceEEEEECCCCCcchhHHHHHHHHHHHhC-C-CCEEEeccCCCCCHH---HHHHHHHHHHHhC
Confidence 433 22344 45776641 1 2556666554321 1 133333333344433 3445566656554
No 160
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=46.91 E-value=1.9e+02 Score=27.35 Aligned_cols=44 Identities=14% Similarity=0.381 Sum_probs=27.3
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
...+.++.+...++|++|+.+.+-+ ....+.+.+.+.+++ ||.+
T Consensus 44 ~~~~~i~~~~~~~~DgiIi~~~~~~--~~~~~~~~~~~~~iP--vV~v 87 (298)
T cd06302 44 GQVQIIEDLIAQGVDAIAVVPNDPD--ALEPVLKKAREAGIK--VVTH 87 (298)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCHH--HHHHHHHHHHHCCCe--EEEE
Confidence 3456777888889999999976633 222233444555654 5544
No 161
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=46.81 E-value=21 Score=26.36 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=22.3
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAA 97 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~ 97 (381)
..+..+.|++++|| ++-||+-|+..|-
T Consensus 12 ~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 12 DPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred ChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 34678899999999 6899999987663
No 162
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=46.67 E-value=1.8e+02 Score=26.91 Aligned_cols=48 Identities=6% Similarity=-0.060 Sum_probs=28.7
Q ss_pred ccCCCCchHHHHH-HHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 62 TSRGGHDTNKIVD-NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 62 tsR~~~~~~~i~~-~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
++...++.++.++ .+..+++|++++.+.+-... ..+.+.+.|+| ||.+
T Consensus 36 ~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~----~~~~l~~~~iP--vv~~ 84 (269)
T cd06297 36 PLLSLARLKRYLESTTLAYLTDGLLLASYDLTER----LAERRLPTERP--VVLV 84 (269)
T ss_pred eCCCcHHHHHHHHHHHHhcCCCEEEEecCccChH----HHHHHhhcCCC--EEEE
Confidence 3333334455554 68899999999998764432 22344455655 4443
No 163
>PRK06186 hypothetical protein; Validated
Probab=46.33 E-value=46 Score=31.69 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=38.4
Q ss_pred CCcEEEEEcCCCc--HHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhc
Q 016855 80 GINQVYIIGGDGT--QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 153 (381)
Q Consensus 80 ~Id~LvvIGGdgS--~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~ 153 (381)
++|++++-||.|. ..+.....++++++++| +.|| |.|++.|+=..+.-+-. ..+|.|.
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP--~LGI-------------ClGmQ~avIe~arnv~g-~~dA~s~ 112 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENGIP--FLGT-------------CGGFQHALLEYARNVLG-WADAAHA 112 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcCCC--eEee-------------chhhHHHHHHHHhhhcC-CcCCCcC
Confidence 5799999999997 44445556666665533 5554 99999877666654432 3355553
No 164
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=46.26 E-value=11 Score=31.82 Aligned_cols=65 Identities=20% Similarity=0.331 Sum_probs=36.3
Q ss_pred chHHHHHHHHHcC-CcEEEEEcCCCcHHHHHHHHHHHHHcCC--CceEeeeccccccCccCCCCCCChHHHHHH
Q 016855 68 DTNKIVDNIEDRG-INQVYIIGGDGTQKGAALIYKEVEKRGL--QVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 138 (381)
Q Consensus 68 ~~~~i~~~l~~~~-Id~LvvIGGdgS~~~a~~L~~~~~~~g~--~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~ 138 (381)
..+.+.+..+..+ .+.+|++|||||+..+. ..+.+... .+++.-+|.==-||+. +++|+.+-...
T Consensus 41 ~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv---~~l~~~~~~~~~~l~iiP~GT~N~~a---r~lg~~~~~~~ 108 (130)
T PF00781_consen 41 HAEALARILALDDYPDVIVVVGGDGTLNEVV---NGLMGSDREDKPPLGIIPAGTGNDFA---RSLGIPSDPEA 108 (130)
T ss_dssp HHHHHHHHHHHTTS-SEEEEEESHHHHHHHH---HHHCTSTSSS--EEEEEE-SSS-HHH---HHTT--SSHHH
T ss_pred hHHHHHHHHhhccCccEEEEEcCccHHHHHH---HHHhhcCCCccceEEEecCCChhHHH---HHcCCCCCcHH
Confidence 3444444333333 38999999999987653 22222232 3478889987788885 35666655544
No 165
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=45.89 E-value=23 Score=29.81 Aligned_cols=48 Identities=17% Similarity=0.347 Sum_probs=25.5
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccccc
Q 016855 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 121 (381)
Q Consensus 71 ~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDN 121 (381)
.+.+.+.+...|.++++-||+-+.-+. +.++++|.++-+++.|.....
T Consensus 86 d~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~s~ 133 (146)
T PF01936_consen 86 DILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSASE 133 (146)
T ss_dssp HHHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS-H
T ss_pred HHHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCCCH
Confidence 344555555679999999999987653 445567888778886554443
No 166
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=45.48 E-value=2.2e+02 Score=29.55 Aligned_cols=110 Identities=18% Similarity=0.194 Sum_probs=73.6
Q ss_pred eEeCChhhHhchhhcCCccccccCCCCchH-HHHHHHHHcCCcE-EEEEcCCC-------------cHHHHHHHHHHHHH
Q 016855 41 TLTLSPKVVNDIHKRGGTILRTSRGGHDTN-KIVDNIEDRGINQ-VYIIGGDG-------------TQKGAALIYKEVEK 105 (381)
Q Consensus 41 ~~~L~~~~v~~i~~~GGt~LGtsR~~~~~~-~i~~~l~~~~Id~-LvvIGGdg-------------S~~~a~~L~~~~~~ 105 (381)
.++-|.+.|+.. ||- |.=.+.|+. .+.+.-++.+++. .+++|||. .|..|..+.+...+
T Consensus 42 LiEAT~NQVdq~---GGY---TGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~ 115 (421)
T PRK15052 42 LIEATSNQVNQF---GGY---TGMTPADFREFVYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVR 115 (421)
T ss_pred EEEecccccccc---CCc---CCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHH
Confidence 456777777666 664 444445544 4556677889998 99999984 36666777666677
Q ss_pred cCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhc--CcceEEE
Q 016855 106 RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV--ENGVGIV 160 (381)
Q Consensus 106 ~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~--~~rv~iV 160 (381)
.|+. -|++=.|++ ..+-..-+.-++-++.+++.+...-.++... +.-+|+|
T Consensus 116 AGF~--kIHLD~Sm~--ca~d~~~L~d~~vA~Raa~L~~~aE~~~~~~~~~~~vYvI 168 (421)
T PRK15052 116 AGFS--KIHLDASMS--CADDPIPLAPETVAERAAVLCQAAESVATDCQREQLSYVI 168 (421)
T ss_pred cCCc--eEEecCCCC--ccCCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCCceEEe
Confidence 7976 799988888 2222244566888899888887655555432 2237777
No 167
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=45.18 E-value=30 Score=25.57 Aligned_cols=50 Identities=8% Similarity=0.251 Sum_probs=35.2
Q ss_pred ccccCCCCchHHHHHHHHHcCCcE------------EEEEcCCCcHHHHHHHHHHHH-HcCCC
Q 016855 60 LRTSRGGHDTNKIVDNIEDRGINQ------------VYIIGGDGTQKGAALIYKEVE-KRGLQ 109 (381)
Q Consensus 60 LGtsR~~~~~~~i~~~l~~~~Id~------------LvvIGGdgS~~~a~~L~~~~~-~~g~~ 109 (381)
+|+-+..++.++.++.|++.+.+. -|.+|...|...|..+.+.+. ..+.+
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~ 71 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPD 71 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS-
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCC
Confidence 455555567788888999988884 688899899888888888777 55654
No 168
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=44.98 E-value=2.2e+02 Score=30.80 Aligned_cols=95 Identities=21% Similarity=0.243 Sum_probs=63.9
Q ss_pred hHHHHHHHHHc--CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDR--GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 146 (381)
Q Consensus 69 ~~~i~~~l~~~--~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l 146 (381)
-+++++.++.. -|+.+++-.|==++.-|..|-+++-.-|++- |.-=|.||| +++.+
T Consensus 110 ~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~y-v~fKPGtIe--------------qI~sv------- 167 (717)
T COG4981 110 GKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPY-VAFKPGTIE--------------QIRSV------- 167 (717)
T ss_pred hHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCcee-EEecCCcHH--------------HHHHH-------
Confidence 46788777776 5999999999999999999999887767753 556688875 22222
Q ss_pred HHhhhhcCcceEEEEecCCCcc-H----------HHHHHhhhcCCccEEEc
Q 016855 147 HVEVESVENGVGIVKLMGRYSG-F----------ISMYATLASRDVDCCLI 186 (381)
Q Consensus 147 ~~tA~S~~~rv~iVEvMGR~aG-~----------LAl~aaLA~~~ad~ili 186 (381)
-.-|..++.-=.|++.-|.++| | |+.++.|-+ .++++++
T Consensus 168 i~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~-~~NIvl~ 217 (717)
T COG4981 168 IRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRS-RDNIVLC 217 (717)
T ss_pred HHHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhc-CCCEEEE
Confidence 2233334333345665555544 3 677788777 5776664
No 169
>PRK05670 anthranilate synthase component II; Provisional
Probab=43.99 E-value=40 Score=30.46 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=29.5
Q ss_pred HHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHH
Q 016855 76 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 138 (381)
Q Consensus 76 l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~ 138 (381)
+++++.|+||+-||.|+...+....+.+++..-+++|.|| |.|+.--...
T Consensus 39 ~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI-------------ClG~Qlla~a 88 (189)
T PRK05670 39 IEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV-------------CLGHQAIGEA 88 (189)
T ss_pred HHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE-------------CHHHHHHHHH
Confidence 3566789999999999975543332222211112345554 8888754443
No 170
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=43.84 E-value=58 Score=33.42 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=41.9
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccccc
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 121 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDN 121 (381)
.+++.+++.|.+.++|.+|||||--|-.+ .+|++.+++.|.+.-.|-=|.=||-
T Consensus 275 ~~RQ~A~~~La~~~vD~miVVGG~nSSNT-~rL~eia~~~g~~ty~Ie~~~eL~~ 328 (387)
T PRK13371 275 QERQDAMFSLVEEPLDLMVVIGGYNSSNT-THLQEIAIERGIPSYHIDSPERILS 328 (387)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCccH-HHHHHHHHhcCCCEEEECCHHHcCC
Confidence 46888999998888999999999999865 5688888877766555555666654
No 171
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.77 E-value=2.6e+02 Score=25.55 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=27.7
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
...+.++.+...++|++++...+.+-. . .+.+.+.+ ++||.+
T Consensus 43 ~~~~~i~~l~~~~~dgiii~~~~~~~~---~-~~~~~~~~--ipvV~i 84 (270)
T cd06296 43 PERQWVERLSARRTDGVILVTPELTSA---Q-RAALRRTG--IPFVVV 84 (270)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCChH---H-HHHHhcCC--CCEEEE
Confidence 345678889999999999988764422 2 23444445 457754
No 172
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=43.67 E-value=78 Score=30.09 Aligned_cols=98 Identities=18% Similarity=0.234 Sum_probs=62.4
Q ss_pred cccccCccCCCCCCChHHH--HHHHHHHHHHHHHhhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCC
Q 016855 117 KTIDNDIAVIDKSFGFDTA--VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE 194 (381)
Q Consensus 117 kTIDNDi~~tD~tiGFdTA--~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~ 194 (381)
.|+.-|+.......|.+-+ -+.+.+++ .....++......-+.-|.--=-+|++++||. .|+++++=|-.-.+|
T Consensus 95 ~tV~~evafg~~n~g~~~~e~~~rv~~~l---~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~-~P~iliLDEPta~LD 170 (235)
T COG1122 95 PTVEDEVAFGLENLGLPREEIEERVAEAL---ELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM-GPEILLLDEPTAGLD 170 (235)
T ss_pred CcHHHHHhhchhhcCCCHHHHHHHHHHHH---HHcCchhhccCCccccCCcceeeHHhhHHHHc-CCCEEEEcCCCCCCC
Confidence 5777788777778888765 22333333 33333333335677888888889999999999 799999988766555
Q ss_pred C--hhhHHHHHHHHHHhCCceEEEEe
Q 016855 195 G--PGGLFEFIERQLKENGHMVIVVA 218 (381)
Q Consensus 195 ~--~~~~~~~I~~~~~~~~~~iIvVs 218 (381)
. ..++.+.+++-.++.+..+|+++
T Consensus 171 ~~~~~~l~~~l~~L~~~~~~tii~~t 196 (235)
T COG1122 171 PKGRRELLELLKKLKEEGGKTIIIVT 196 (235)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3 22344444432222345666555
No 173
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=43.28 E-value=3e+02 Score=26.18 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=27.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
....++.+..+++|++++...|... .....+++.+.|++ ||.+
T Consensus 46 q~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~giP--vV~~ 88 (303)
T cd01539 46 QNEQIDTALAKGVDLLAVNLVDPTA--AQTVINKAKQKNIP--VIFF 88 (303)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhh--HHHHHHHHHHCCCC--EEEe
Confidence 4467889999999999998876432 12233444455654 6643
No 174
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=43.12 E-value=2.3e+02 Score=24.87 Aligned_cols=83 Identities=11% Similarity=0.108 Sum_probs=47.0
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccC---ccCCCCCCChHHHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND---IAVIDKSFGFDTAVEEAQRAIN 144 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDND---i~~tD~tiGFdTA~~~~~~ai~ 144 (381)
+..++++.+...++|+++..+.+..... +.+.+.+.+ +++|.+=.+.+.. -...-..+.+..+...+++.+.
T Consensus 46 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 120 (269)
T cd01391 46 RALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYLA 120 (269)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHHH
Confidence 4667778888889999988877765443 334444455 4577664443321 1112234455556666655554
Q ss_pred HHHHhhhhcCcceEEEE
Q 016855 145 AAHVEVESVENGVGIVK 161 (381)
Q Consensus 145 ~l~~tA~S~~~rv~iVE 161 (381)
+.. + +++.++=
T Consensus 121 ~~~-----~-~~i~~i~ 131 (269)
T cd01391 121 EKG-----W-KRVALIY 131 (269)
T ss_pred HhC-----C-ceEEEEe
Confidence 332 4 4566653
No 175
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=43.01 E-value=92 Score=26.52 Aligned_cols=68 Identities=21% Similarity=0.395 Sum_probs=47.0
Q ss_pred CEEEEEccchhhhhcC-Ce---------EeCChhhHhchhhcCCccccccCCC--CchHHHHHHHHHcCCcEEEEEcCCC
Q 016855 24 NSLIEFQGGYRGFYSK-NT---------LTLSPKVVNDIHKRGGTILRTSRGG--HDTNKIVDNIEDRGINQVYIIGGDG 91 (381)
Q Consensus 24 ~~V~G~~~G~~GL~~~-~~---------~~L~~~~v~~i~~~GGt~LGtsR~~--~~~~~i~~~l~~~~Id~LvvIGGdg 91 (381)
.-++++=.|..=|.+- .+ =.++.+..+.+.+.|-.++-.. .+ -|.+++++.+.+++.+-++++|+-|
T Consensus 17 ~~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p-~kD~TD~e~Al~~~~~~~~~~i~v~Ga~G 95 (123)
T PF04263_consen 17 DFIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFP-EKDYTDLEKALEYAIEQGPDEIIVLGALG 95 (123)
T ss_dssp SEEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE--STTS-HHHHHHHHHHHTTTSEEEEES-SS
T ss_pred CEEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceeccc-ccccCHHHHHHHHHHHCCCCEEEEEecCC
Confidence 4577888888877766 32 2345545555666655566555 33 3799999999999999999999988
Q ss_pred c
Q 016855 92 T 92 (381)
Q Consensus 92 S 92 (381)
.
T Consensus 96 g 96 (123)
T PF04263_consen 96 G 96 (123)
T ss_dssp S
T ss_pred C
Confidence 6
No 176
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=42.55 E-value=2.6e+02 Score=25.33 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 70 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 70 ~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
+.+.+.+.+.++|++|+.+.+..... + +++.+.++ ++|.+
T Consensus 49 ~~~~~~~~~~~vdgiii~~~~~~~~~---~-~~~~~~~i--pvV~~ 88 (268)
T cd06271 49 EVYRRLVESGLVDGVIISRTRPDDPR---V-ALLLERGF--PFVTH 88 (268)
T ss_pred HHHHHHHHcCCCCEEEEecCCCCChH---H-HHHHhcCC--CEEEE
Confidence 34455566778999999887644222 2 33344554 46655
No 177
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=42.16 E-value=27 Score=34.27 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=39.5
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccC
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 122 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDND 122 (381)
+++..+..|. ..+|.+++|||-.|-.+ .+|++.+++.+.+.-.|-=|.=||-|
T Consensus 198 ~RQ~a~~~La-~~vD~miVVGg~~SsNT-~rL~eia~~~~~~t~~Ie~~~el~~~ 250 (281)
T PRK12360 198 KRQESAKELS-KEVDVMIVIGGKHSSNT-QKLVKICEKNCPNTFHIETADELDLE 250 (281)
T ss_pred hHHHHHHHHH-HhCCEEEEecCCCCccH-HHHHHHHHHHCCCEEEECChHHCCHH
Confidence 5788888885 46999999999999866 46778887777555555556666544
No 178
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.95 E-value=79 Score=25.33 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=44.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHcCCCceEee------eccc--cccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhcCc
Q 016855 84 VYIIGGDGTQKGAALIYKEVEKRGLQVAVAG------IPKT--IDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVEN 155 (381)
Q Consensus 84 LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIg------IPkT--IDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~~~ 155 (381)
+++|||.+.+... +.+.++++|... +.+ -|+. |++.+.-.|.-|=+-..++.. +...++..|.....
T Consensus 2 vliVGG~~~~~~~--~~~~~~~~G~~~-~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~--~~~~vk~~akk~~i 76 (97)
T PF10087_consen 2 VLIVGGREDRERR--YKRILEKYGGKL-IHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHN--AMWKVKKAAKKYGI 76 (97)
T ss_pred EEEEcCCcccHHH--HHHHHHHcCCEE-EEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChH--HHHHHHHHHHHcCC
Confidence 5788885555432 334455667653 333 3444 566665555332222222222 12334555554433
Q ss_pred ceEEEEecCCCccHHHHHHhhhc
Q 016855 156 GVGIVKLMGRYSGFISMYATLAS 178 (381)
Q Consensus 156 rv~iVEvMGR~aG~LAl~aaLA~ 178 (381)
.+.+. |..|+-++..+|+.
T Consensus 77 p~~~~----~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 77 PIIYS----RSRGVSSLERALER 95 (97)
T ss_pred cEEEE----CCCCHHHHHHHHHh
Confidence 34333 67888888888764
No 179
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=41.08 E-value=52 Score=37.23 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=29.7
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 100 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~ 100 (381)
..+++++.+++.++|.+|-|||--.++.|..++
T Consensus 527 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 527 TVRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 367889999999999999999999999998775
No 180
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=40.65 E-value=3.3e+02 Score=25.95 Aligned_cols=23 Identities=9% Similarity=0.254 Sum_probs=18.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCC
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDG 91 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdg 91 (381)
..+.++.|..+++|++|+.+.+.
T Consensus 105 ~~~~~~~l~~~~vdgiIi~~~~~ 127 (327)
T TIGR02417 105 EKVVIENLLARQVDALIVASCMP 127 (327)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCC
Confidence 44678889999999999988654
No 181
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.15 E-value=2.9e+02 Score=25.15 Aligned_cols=25 Identities=16% Similarity=0.456 Sum_probs=20.4
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQ 93 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~ 93 (381)
..++++.+..+++|++++.+.+-+-
T Consensus 44 ~~~~i~~l~~~~~dgiii~~~~~~~ 68 (265)
T cd06290 44 ELEALELLKSRRVDALILLGGDLPE 68 (265)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCh
Confidence 4577899999999999999876443
No 182
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=39.58 E-value=49 Score=29.67 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=33.2
Q ss_pred ccCCCCchHHHHHHHHHcCCcEEEEEcCCC-cHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 62 TSRGGHDTNKIVDNIEDRGINQVYIIGGDG-TQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 62 tsR~~~~~~~i~~~l~~~~Id~LvvIGGdg-S~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
--|.++...+.+++.++.+++.+|.+.|-. .+-+ .++- ....+|||||-..
T Consensus 35 aHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpg--vva~-----~t~~PVIgvP~~~ 86 (156)
T TIGR01162 35 AHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPG--MVAA-----LTPLPVIGVPVPS 86 (156)
T ss_pred cccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHH--HHHh-----ccCCCEEEecCCc
Confidence 346666788888888999998777765542 2222 2221 2357899999753
No 183
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=39.48 E-value=91 Score=22.89 Aligned_cols=50 Identities=24% Similarity=0.496 Sum_probs=37.8
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
..+++++..++.|++++.+- --+++.+...+.+.+++.|+++ +.|+-.++
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT-Dh~~~~~~~~~~~~~~~~gi~~-i~G~E~~~ 65 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT-DHGNLFGAVEFYKAAKKAGIKP-IIGLEANI 65 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe-eCCcccCHHHHHHHHHHcCCeE-EEEEEEEe
Confidence 47889999999999976554 4557888888888877778753 66666554
No 184
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=39.18 E-value=55 Score=30.27 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=31.9
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 169 FISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 169 ~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
-++++.||+. +|+++++=|-.-.+|. ...+.+.+++..++++..+|+++--
T Consensus 153 rl~la~al~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 153 RVAIARALVN-NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred HHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3788889998 7999999775444442 2234454443323346677777654
No 185
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=38.58 E-value=59 Score=30.02 Aligned_cols=61 Identities=25% Similarity=0.234 Sum_probs=37.0
Q ss_pred EEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 159 IVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 159 iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+-+.-|...=-++++.+|+. .|+++++=|-.-.+|. ...+.+.+++..++.+..+|+++--
T Consensus 135 ~~~LS~G~~qrv~laral~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 135 IAELSGGEKQRISLIRNLQF-MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred cccCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 34454545556889999999 7999999665444442 2233444443333345677777744
No 186
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.17 E-value=3.1e+02 Score=24.97 Aligned_cols=41 Identities=12% Similarity=0.369 Sum_probs=27.0
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
....++.+..+++|++++.+-+.... .+ +++.+.++| ||.+
T Consensus 44 ~~~~i~~l~~~~~dgiii~~~~~~~~---~~-~~~~~~~iP--vv~~ 84 (265)
T cd06285 44 QRRAIEMLLDRRVDGLILGDARSDDH---FL-DELTRRGVP--FVLV 84 (265)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCChH---HH-HHHHHcCCC--EEEE
Confidence 45678889999999999987554432 22 334455655 5544
No 187
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=37.91 E-value=3.8e+02 Score=25.84 Aligned_cols=23 Identities=0% Similarity=-0.016 Sum_probs=18.4
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCC
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDG 91 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdg 91 (381)
..+.++.|..+++|++|+.+.+-
T Consensus 104 ~~~~i~~l~~~~vdgiIi~~~~~ 126 (343)
T PRK10727 104 ERQAIEQLIRHRCAALVVHAKMI 126 (343)
T ss_pred HHHHHHHHHhcCCCEEEEecCCC
Confidence 34577888899999999998653
No 188
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=37.74 E-value=94 Score=30.49 Aligned_cols=52 Identities=13% Similarity=0.347 Sum_probs=38.1
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccc
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 120 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTID 120 (381)
.+++.+++.|.+ .+|.+++|||-.|-.+ .+|++-+++.|.+.-.|-=|.=||
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSsNT-~rL~ei~~~~~~~t~~Ie~~~el~ 247 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSSNT-TRLYEIAEEHGPPSYLIETAEELP 247 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCchH-HHHHHHHHHhCCCEEEECChHHCC
Confidence 467888888866 5999999999999866 568888887775544444455554
No 189
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=37.73 E-value=3.1e+02 Score=24.84 Aligned_cols=77 Identities=9% Similarity=0.019 Sum_probs=42.6
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChH--HHHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD--TAVEEAQRAINA 145 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFd--TA~~~~~~ai~~ 145 (381)
...+.++.+.+.++|++++.+-+.+.. . +.+ +.+.|++ +|.+=...+. .-.++++| .|...+++.+-+
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~~~~-~--~~~-~~~~~ip--vv~~~~~~~~----~~~~v~~d~~~~g~~~~~~l~~ 113 (264)
T cd01574 44 ALRAAVRRLLAQRVDGVIVNAPLDDAD-A--ALA-AAPADVP--VVFVDGSPSP----RVSTVSVDQEGGARLATEHLLE 113 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCChH-H--HHH-HHhcCCC--EEEEeccCCC----CCCEEEeCcHHHHHHHHHHHHH
Confidence 456778889999999999998776554 2 222 2344654 6655222221 12334444 455555554432
Q ss_pred HHHhhhhcCcceEEE
Q 016855 146 AHVEVESVENGVGIV 160 (381)
Q Consensus 146 l~~tA~S~~~rv~iV 160 (381)
..| +++.++
T Consensus 114 -----~g~-~~i~~i 122 (264)
T cd01574 114 -----LGH-RTIAHV 122 (264)
T ss_pred -----CCC-CEEEEE
Confidence 244 355554
No 190
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=37.66 E-value=9.3 Score=36.96 Aligned_cols=65 Identities=28% Similarity=0.426 Sum_probs=47.1
Q ss_pred chHHHHHHHHHcCCc---EEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHH
Q 016855 68 DTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 138 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~ 138 (381)
..+++.+.|.+++++ .+|.+||--..+-+--.+..+ .+| ++.+.||-|+ +...|.|+|--||+|.
T Consensus 14 ~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y-~RG--i~~i~vPTTL---La~vDssiGgK~~vN~ 81 (260)
T PF01761_consen 14 TVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTY-MRG--IPFIQVPTTL---LAQVDSSIGGKTGVNF 81 (260)
T ss_dssp HHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHB-TT----EEEEEE-SH---HHHHTTTSSSEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHH-ccC--CceEeccccH---HHHHhcccCCCeeeeC
Confidence 478899999999994 999999987776665554432 245 6799999998 4677889998888875
No 191
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=37.61 E-value=3.2e+02 Score=24.92 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=44.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC-CCCCChHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t-D~tiGFdTA~~~~~~ai~~l~ 147 (381)
..+.++.+...++|++|+..++.+... .+.+++.++|++ +|.+ |++.+.. -.+++.|- .+....+.+.+.
T Consensus 44 ~~~~l~~~~~~~vdgii~~~~~~~~~~--~~i~~~~~~~ip--vV~~----~~~~~~~~~~~V~~d~-~~~g~~~~~~l~ 114 (273)
T cd06305 44 QADQIDQAIAQKVDAIIIQHGRAEVLK--PWVKRALDAGIP--VVAF----DVDSDNPKVNNTTQDD-YSLARLSLDQLV 114 (273)
T ss_pred HHHHHHHHHHcCCCEEEEecCChhhhH--HHHHHHHHcCCC--EEEe----cCCCCCCccceeeech-HHHHHHHHHHHH
Confidence 446677777889999999987653211 222344555654 6644 4443321 13455543 233344444444
Q ss_pred HhhhhcCcceEEEE
Q 016855 148 VEVESVENGVGIVK 161 (381)
Q Consensus 148 ~tA~S~~~rv~iVE 161 (381)
.....| +++.++-
T Consensus 115 ~~~~g~-~~i~~i~ 127 (273)
T cd06305 115 KDLGGK-GNVGYVN 127 (273)
T ss_pred HHhCCC-CCEEEEE
Confidence 443455 4577764
No 192
>PRK05637 anthranilate synthase component II; Provisional
Probab=37.21 E-value=77 Score=29.43 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=34.2
Q ss_pred HHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHH
Q 016855 74 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 138 (381)
Q Consensus 74 ~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~ 138 (381)
+.+++.+.|++|+-||-|+...+....+.++...-+++|.|| |.|+..-+..
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI-------------ClG~Qlla~a 89 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI-------------CLGFQALLEH 89 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE-------------cHHHHHHHHH
Confidence 455677899999999999997764433333221113556765 9998865554
No 193
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=37.06 E-value=63 Score=29.85 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=39.0
Q ss_pred EEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 159 IVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 159 iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+-+.-|..-=-++++.|++. .|+++++=|-.-.+|. ...+.+.+++..++.+.++|+++--
T Consensus 127 ~~~LS~G~~qrv~laral~~-~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 189 (232)
T PRK10771 127 PGQLSGGQRQRVALARCLVR-EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189 (232)
T ss_pred cccCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 34666666667889999999 7999999665444442 2234555554433346677777644
No 194
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=36.26 E-value=4.3e+02 Score=26.03 Aligned_cols=132 Identities=16% Similarity=0.122 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC--CCCChHHHHHHHHHHHHHHH
Q 016855 70 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 70 ~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD--~tiGFdTA~~~~~~ai~~l~ 147 (381)
..+++.|...++|++++..-|... .....+.+.+.| |+|| |+|+|++..+ ..+|.++.-.....+.+.+.
T Consensus 70 ~~~i~~li~~~vdgIiv~~~d~~a--l~~~l~~a~~~g--IpVV----~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~ 141 (336)
T PRK15408 70 VQLINNFVNQGYNAIIVSAVSPDG--LCPALKRAMQRG--VKVL----TWDSDTKPECRSYYINQGTPEQLGSMLVEMAA 141 (336)
T ss_pred HHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHHCC--CeEE----EeCCCCCCccceEEEecCCHHHHHHHHHHHHH
Confidence 367899999999999998755331 112224445556 4466 4677764322 33454333222332223332
Q ss_pred HhhhhcCcceEEEEe-cC--CCccHHH-HHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhC
Q 016855 148 VEVESVENGVGIVKL-MG--RYSGFIS-MYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 210 (381)
Q Consensus 148 ~tA~S~~~rv~iVEv-MG--R~aG~LA-l~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~ 210 (381)
......+.+|.++.- ++ .+-.|.. ....++...+++-+++...-+.+ ..+-.+.+++.++..
T Consensus 142 ~~l~~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d-~~~a~~~~~~lL~~~ 207 (336)
T PRK15408 142 KQVGKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYND-ATKSLQTAEGILKAY 207 (336)
T ss_pred HhcCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCc-HHHHHHHHHHHHHHC
Confidence 222212245666532 22 2223432 12234322467666654322222 112334455555554
No 195
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=35.28 E-value=56 Score=32.34 Aligned_cols=133 Identities=14% Similarity=0.213 Sum_probs=68.6
Q ss_pred ccccccCC-CCchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccc-cCccCCCCCCChH--
Q 016855 58 TILRTSRG-GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID-NDIAVIDKSFGFD-- 133 (381)
Q Consensus 58 t~LGtsR~-~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTID-NDi~~tD~tiGFd-- 133 (381)
.+|.++.. ++..+++.+.+...++|++|+.|-...-. +.+.+.+.++| +|.+=.+.+ .++ .++++|
T Consensus 91 ~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~~P--~V~i~~~~~~~~~----~~V~~Dn~ 160 (333)
T COG1609 91 LLLANTDDDPEKEREYLETLLQKRVDGLILLGERPNDS----LLELLAAAGIP--VVVIDRSPPGLGV----PSVGIDNF 160 (333)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHH----HHHHHHhcCCC--EEEEeCCCccCCC----CEEEEChH
Confidence 46776665 34567889999999999999999222222 22333445655 555444333 222 244444
Q ss_pred HHHHHHHHHHHHHHHhhhhcCcceEEEEe-------cCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHH
Q 016855 134 TAVEEAQRAINAAHVEVESVENGVGIVKL-------MGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQ 206 (381)
Q Consensus 134 TA~~~~~~ai~~l~~tA~S~~~rv~iVEv-------MGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~ 206 (381)
-|...+++.+ -...|+ ++.++-. .-|..||+.....-.- ..+-.++++.+++.+ .-.+.+.+-
T Consensus 161 ~~~~~a~~~L-----~~~G~~-~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~-~~~~~~i~~~~~~~~---~g~~~~~~l 230 (333)
T COG1609 161 AGAYLATEHL-----IELGHR-RIAFIGGPLDSSASRERLEGYRAALREAGL-PINPEWIVEGDFSEE---SGYEAAERL 230 (333)
T ss_pred HHHHHHHHHH-----HHCCCc-eEEEEeCCCccccHhHHHHHHHHHHHHCCC-CCCcceEEecCCChH---HHHHHHHHH
Confidence 2222223222 223453 5555432 2334577765544221 111355666666555 344555655
Q ss_pred HHhC
Q 016855 207 LKEN 210 (381)
Q Consensus 207 ~~~~ 210 (381)
+...
T Consensus 231 l~~~ 234 (333)
T COG1609 231 LARG 234 (333)
T ss_pred HhcC
Confidence 5543
No 196
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=34.61 E-value=66 Score=29.00 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=35.1
Q ss_pred EEecCCCccHHHHHHhhhcCC--ccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCceEEEEecC
Q 016855 160 VKLMGRYSGFISMYATLASRD--VDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~--ad~iliPE~~~~~~--~~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
-+..|...=-+++..+|+. . |+++++=|---.+| ....+.+.+++. .+.+.+||+++--
T Consensus 86 ~~LSgGq~qrl~laral~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~-~~~g~tvIivSH~ 148 (176)
T cd03238 86 STLSGGELQRVKLASELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILIEHN 148 (176)
T ss_pred CcCCHHHHHHHHHHHHHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEeCC
Confidence 4455555556788889998 8 99999955433333 223344444433 2345666666643
No 197
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=33.50 E-value=68 Score=29.04 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=31.4
Q ss_pred HHHHHcCCcEEEEEcCCCcHHHHH---HHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHH
Q 016855 74 DNIEDRGINQVYIIGGDGTQKGAA---LIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 138 (381)
Q Consensus 74 ~~l~~~~Id~LvvIGGdgS~~~a~---~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~ 138 (381)
+.+.+.+.|++|+-||.|+...+. .+.+.+ +. +++|.|| |.|++-.+..
T Consensus 37 ~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~-~~--~~PvLGI-------------C~G~Qll~~~ 88 (188)
T TIGR00566 37 QEIEALLPLLIVISPGPCTPNEAGISLEAIRHF-AG--KLPILGV-------------CLGHQAMGQA 88 (188)
T ss_pred HHHHhcCCCEEEEcCCCCChhhcchhHHHHHHh-cc--CCCEEEE-------------CHHHHHHHHH
Confidence 445677899999999999875422 222322 22 3457766 8998865544
No 198
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.17 E-value=3.8e+02 Score=24.46 Aligned_cols=77 Identities=8% Similarity=0.064 Sum_probs=41.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC-CCCC--hHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFG--FDTAVEEAQRAINA 145 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD-~tiG--FdTA~~~~~~ai~~ 145 (381)
..+.++.+...++|++|+.+-+-.... +.+ +.+.++ ++|.+ |++++..+ .+++ +..|...+++.+-+
T Consensus 44 ~~~~i~~~~~~~~dgiii~~~~~~~~~---~~~-~~~~~~--pvV~i----~~~~~~~~~~~V~~d~~~~~~~~~~~L~~ 113 (269)
T cd06293 44 ELTYLRWLDTNHVDGLIFVTNRPDDGA---LAK-LINSYG--NIVLV----DEDVPGAKVPKVFCDNEQGGRLATRHLAR 113 (269)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHH---HHH-HHhcCC--CEEEE----CCCCCCCCCCEEEECCHHHHHHHHHHHHH
Confidence 457789999999999999874323222 222 223454 46654 44333222 2344 44455555554432
Q ss_pred HHHhhhhcCcceEEEE
Q 016855 146 AHVEVESVENGVGIVK 161 (381)
Q Consensus 146 l~~tA~S~~~rv~iVE 161 (381)
..| +++.++-
T Consensus 114 -----~G~-~~i~~i~ 123 (269)
T cd06293 114 -----AGH-RRIAFVG 123 (269)
T ss_pred -----CCC-ceEEEEe
Confidence 255 4577663
No 199
>CHL00101 trpG anthranilate synthase component 2
Probab=33.14 E-value=61 Score=29.36 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=17.3
Q ss_pred HHHHcCCcEEEEEcCCCcHHH
Q 016855 75 NIEDRGINQVYIIGGDGTQKG 95 (381)
Q Consensus 75 ~l~~~~Id~LvvIGGdgS~~~ 95 (381)
.+.+.+.|++|+.||.|+...
T Consensus 38 ~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 38 KIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred HHhhCCCCEEEECCCCCChHH
Confidence 356678999999999998754
No 200
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=33.14 E-value=78 Score=28.68 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=37.0
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCceEEEEecC
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~--~~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
-+.-|...=.++++.+|+. .|+++++=|---.+| ....+.+.+++ +.+++..+|+++--
T Consensus 136 ~~LS~G~~qrl~la~al~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~~tii~~tH~ 196 (214)
T TIGR02673 136 EQLSGGEQQRVAIARAIVN-SPPLLLADEPTGNLDPDLSERILDLLKR-LNKRGTTVIVATHD 196 (214)
T ss_pred hhCCHHHHHHHHHHHHHhC-CCCEEEEeCCcccCCHHHHHHHHHHHHH-HHHcCCEEEEEeCC
Confidence 3455555667899999999 799999966544444 23344555554 33345667777643
No 201
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=32.69 E-value=2.9e+02 Score=27.19 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=39.0
Q ss_pred CchHHHHHHHHHc--CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHH
Q 016855 67 HDTNKIVDNIEDR--GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 144 (381)
Q Consensus 67 ~~~~~i~~~l~~~--~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~ 144 (381)
+++.++.+.++++ +.|++|++-|-|||.-...+...+.+ +++.+||-.=.-.--+.+.+| |..+...|+.
T Consensus 57 ~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l~-~l~kPVVlTGa~~P~~~~~sD-------g~~NL~~Av~ 128 (313)
T PF00710_consen 57 EDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLLD-NLDKPVVLTGAMRPLSAPGSD-------GPRNLYDAVR 128 (313)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHEE-S-SSEEEEE--SS-TTSTT-S-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHhc-CCCCCEEEeCCcCCCcCCCCc-------cHHHHHHHHH
Confidence 3444444444443 59999999999999875555444322 334556644333333445555 6666666665
Q ss_pred HHHH
Q 016855 145 AAHV 148 (381)
Q Consensus 145 ~l~~ 148 (381)
-...
T Consensus 129 ~A~~ 132 (313)
T PF00710_consen 129 VAAS 132 (313)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 4443
No 202
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=32.50 E-value=77 Score=29.09 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=34.5
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEec
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAE 219 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsE 219 (381)
+.-|..-=-++++.+|+. .|+++++=|---.+|. ...+.+.+++..++.+..||+++-
T Consensus 146 ~LS~Ge~qrl~la~al~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 205 (228)
T PRK10584 146 QLSGGEQQRVALARAFNG-RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205 (228)
T ss_pred hCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 333333344788999998 7999998776544542 223445454433333556777763
No 203
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=32.45 E-value=65 Score=31.74 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=53.5
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCC----ChHHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSF----GFDTAVEEAQRAI 143 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~ti----GFdTA~~~~~~ai 143 (381)
.++++++.|.+. .|.+++|||--|-.+ .+|.+-..+.|.+--.|--|.=||.+...--.++ |..|==..+.+.+
T Consensus 201 nRQ~Avk~la~~-~Dl~iVVG~~nSSNs-~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi 278 (294)
T COG0761 201 NRQDAVKELAPE-VDLVIVVGSKNSSNS-NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVI 278 (294)
T ss_pred hHHHHHHHHhhc-CCEEEEECCCCCccH-HHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHH
Confidence 478899998886 999999999999755 5677777777876667777877776664333333 4444333444444
Q ss_pred HHHH
Q 016855 144 NAAH 147 (381)
Q Consensus 144 ~~l~ 147 (381)
++++
T Consensus 279 ~~l~ 282 (294)
T COG0761 279 AKLR 282 (294)
T ss_pred HHHH
Confidence 4444
No 204
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=32.31 E-value=96 Score=26.00 Aligned_cols=66 Identities=11% Similarity=0.185 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHH
Q 016855 70 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 141 (381)
Q Consensus 70 ~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ 141 (381)
+.+++.+++ .+|+.|+|-+-.-+++++..+....+|.-++-.|+ +|++...-.-.|+-++-+....
T Consensus 43 ~~v~~~ln~----~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~--~~~~~vv~~i~G~~~~~~ll~~ 108 (116)
T cd02991 43 PEVIEYINT----RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLK--DNRMTIVGRLEGLIQPEDLINR 108 (116)
T ss_pred HHHHHHHHc----CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEec--CCceEEEEEEeCCCCHHHHHHH
Confidence 567777764 48999999998888999988877788866666676 4666555567788877665544
No 205
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=32.24 E-value=4.2e+02 Score=24.61 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=24.3
Q ss_pred hhcCCccccccCCCCchHHHHHHHHH--cCCcEEEEEcCCCc
Q 016855 53 HKRGGTILRTSRGGHDTNKIVDNIED--RGINQVYIIGGDGT 92 (381)
Q Consensus 53 ~~~GGt~LGtsR~~~~~~~i~~~l~~--~~Id~LvvIGGdgS 92 (381)
..-|||.|.+. +.++++++.+.+ .+..-++|.+|-+.
T Consensus 4 iK~GGs~l~~~---~~~~~~~~~i~~l~~g~~vvvV~Sg~~~ 42 (227)
T cd04234 4 QKFGGTSVASA---ERIKRVADIIKAYEKGNRVVVVVSAMGG 42 (227)
T ss_pred EEECccccCCH---HHHHHHHHHHHHhhcCCCEEEEEcCCCc
Confidence 35688888754 234555555544 68999999976544
No 206
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.19 E-value=2.2e+02 Score=24.56 Aligned_cols=22 Identities=14% Similarity=0.465 Sum_probs=10.7
Q ss_pred hHHHHHHHHHcCC-cEEEEEcCC
Q 016855 69 TNKIVDNIEDRGI-NQVYIIGGD 90 (381)
Q Consensus 69 ~~~i~~~l~~~~I-d~LvvIGGd 90 (381)
..++++.|++.+. +..+++||.
T Consensus 71 ~~~~~~~L~~~~~~~~~i~vGG~ 93 (137)
T PRK02261 71 CRGLREKCIEAGLGDILLYVGGN 93 (137)
T ss_pred HHHHHHHHHhcCCCCCeEEEECC
Confidence 4444555555544 334555554
No 207
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=32.13 E-value=37 Score=32.64 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=33.6
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCcc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 124 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~ 124 (381)
..+++.+.++..+.|.+|-+||--..+.++..+..+ + ++.+.||-+..||=.
T Consensus 63 ~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~---~--~p~isVPTa~S~DG~ 114 (250)
T PF13685_consen 63 EVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFEL---G--IPFISVPTAASHDGF 114 (250)
T ss_dssp HHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHH---T----EEEEES--SSGGG
T ss_pred HHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhc---C--CCEEEeccccccccc
Confidence 356777788888999999999977777776665542 4 569999999988854
No 208
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=31.34 E-value=1.1e+02 Score=29.40 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=38.4
Q ss_pred cceEEEEecCCCccHHHHHHhhhcCCc---cEEEcCCCCCCCCChhhHHHHHHHHHHhC--CceEEEEe
Q 016855 155 NGVGIVKLMGRYSGFISMYATLASRDV---DCCLIPESPFYLEGPGGLFEFIERQLKEN--GHMVIVVA 218 (381)
Q Consensus 155 ~rv~iVEvMGR~aG~LAl~aaLA~~~a---d~iliPE~~~~~~~~~~~~~~I~~~~~~~--~~~iIvVs 218 (381)
+.+.++|+ ..||+..++++-.-.+ .++|+|+.|. .-++.|++.+++. ...=|+|+
T Consensus 89 ~~~~i~~~---~~G~v~anAGID~SN~~~g~v~LLP~DPd------~sA~~ir~~l~~~~g~~v~VIIt 148 (243)
T TIGR01916 89 TPFLITET---RHGHVCANAGIDESNVGNGELLLLPEDPD------ASAEKIRRGLRELTGVDVGVIIT 148 (243)
T ss_pred CCeEEEEe---cCceEEeccccccccCCCCeEEecCCChH------HHHHHHHHHHHHHHCCCEEEEEE
Confidence 35888998 8999988888753222 4789999883 5678888887763 34444554
No 209
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=31.28 E-value=1.2e+02 Score=27.01 Aligned_cols=51 Identities=18% Similarity=0.358 Sum_probs=30.3
Q ss_pred ccccccCCCCc----hHHHHHHHHHcCCcEEEEEcCC-CcHHHHHHHHHHHHHcCCCceEeee
Q 016855 58 TILRTSRGGHD----TNKIVDNIEDRGINQVYIIGGD-GTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 58 t~LGtsR~~~~----~~~i~~~l~~~~Id~LvvIGGd-gS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
++.||+|..+. ..++.+.|.++++ .|+. ||. |-|..+++ ...+.|- .+|||
T Consensus 5 ~V~gss~~~~~~~~~A~~lg~~La~~g~-~lv~-Gg~~GlM~a~a~---ga~~~gg--~viGV 60 (159)
T TIGR00725 5 GVIGSSNKSEELYEIAYRLGKELAKKGH-ILIN-GGRTGVMEAVSK---GAREAGG--LVVGI 60 (159)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHHHCCC-EEEc-CCchhHHHHHHH---HHHHCCC--eEEEE
Confidence 36788885432 4567788999997 4555 664 44444433 3334453 36666
No 210
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=31.08 E-value=81 Score=29.90 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=37.9
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecCC
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEGA 221 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG~ 221 (381)
-+.-|...=-++++.||+. .|+++++=|---.+|. ...+.+.+++..+..+..||+++.-.
T Consensus 149 ~~LSgGe~qrv~laral~~-~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 211 (265)
T TIGR02769 149 RQLSGGQLQRINIARALAV-KPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL 211 (265)
T ss_pred hhCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 3444445556888999998 7999999665444442 22345555543333466777777543
No 211
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=30.45 E-value=93 Score=27.22 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=37.1
Q ss_pred EEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCceEEEEecC
Q 016855 158 GIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 158 ~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~--~~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
++.+.-|...=-++++.|++. +|+++++=|-.-.+| ....+.+.+++ +.+++..+|+++.-
T Consensus 79 ~~~qLS~G~~qrl~laral~~-~p~illlDEP~~~LD~~~~~~l~~~l~~-~~~~~~tiii~sh~ 141 (163)
T cd03216 79 MVYQLSVGERQMVEIARALAR-NARLLILDEPTAALTPAEVERLFKVIRR-LRAQGVAVIFISHR 141 (163)
T ss_pred EEEecCHHHHHHHHHHHHHhc-CCCEEEEECCCcCCCHHHHHHHHHHHHH-HHHCCCEEEEEeCC
Confidence 334455555667888999998 799999966544444 22334454443 33345567776643
No 212
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.44 E-value=1.9e+02 Score=24.13 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=11.4
Q ss_pred hHHHHHHHHHcCC-cEEEEEcCCC
Q 016855 69 TNKIVDNIEDRGI-NQVYIIGGDG 91 (381)
Q Consensus 69 ~~~i~~~l~~~~I-d~LvvIGGdg 91 (381)
.+++++.|++.+. +..+++||..
T Consensus 67 ~~~~~~~L~~~~~~~i~i~~GG~~ 90 (122)
T cd02071 67 FPEVIELLRELGAGDILVVGGGII 90 (122)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCC
Confidence 4445555555544 4445555544
No 213
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=30.36 E-value=1.6e+02 Score=22.08 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhc
Q 016855 94 KGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 153 (381)
Q Consensus 94 ~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~ 153 (381)
..|+.|+ +-| |++|.||.+.|-|. .+=.....+-++.+...|.+.
T Consensus 14 E~A~~La----~~G--IRFVpiPv~~dee~---------~~L~s~~~~kLe~ma~~aE~~ 58 (61)
T PF07131_consen 14 EMAHSLA----HIG--IRFVPIPVVTDEEF---------HTLSSQLSQKLERMAAEAEKA 58 (61)
T ss_pred HHHHHHH----HcC--ceeeccccccHHHH---------HHHHHHHHHHHHHHHHHHHHh
Confidence 3445444 345 67999999999884 344445566677777777664
No 214
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.14 E-value=4.2e+02 Score=23.96 Aligned_cols=42 Identities=14% Similarity=0.414 Sum_probs=27.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
..++++.+...++|++++.+.+.+... ..+.+.+.|+ ++|.+
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~~~~---~~~~~~~~~i--pvV~~ 85 (268)
T cd06289 44 QEQLLSTMLEHGVAGIILCPAAGTSPD---LLKRLAESGI--PVVLV 85 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccHH---HHHHHHhcCC--CEEEE
Confidence 456788899999999999987654322 2233444564 46654
No 215
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.12 E-value=3.1e+02 Score=23.55 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=60.4
Q ss_pred CeEeCChhhHhchhhcCCc-cccccCCCCchHHHHHHHHHcCCcEEEEEcCCC-cHHHHHHHHHHHHHcCC-Cce-Eee-
Q 016855 40 NTLTLSPKVVNDIHKRGGT-ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG-TQKGAALIYKEVEKRGL-QVA-VAG- 114 (381)
Q Consensus 40 ~~~~L~~~~v~~i~~~GGt-~LGtsR~~~~~~~i~~~l~~~~Id~LvvIGGdg-S~~~a~~L~~~~~~~g~-~i~-vIg- 114 (381)
+..++-.+-+..+...+|- ++-+..+ ...+++++..++.+.|.+.+-+=++ ++..+..+.+.++++|. ++. ++|
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 3344444455555555552 2221111 2356777888888888777766664 45567777777777765 232 333
Q ss_pred -eccccccCc-----cCCCCCCChHHHHHHHHHHHHH
Q 016855 115 -IPKTIDNDI-----AVIDKSFGFDTAVEEAQRAINA 145 (381)
Q Consensus 115 -IPkTIDNDi-----~~tD~tiGFdTA~~~~~~ai~~ 145 (381)
+|+ .|. .|.|..|+-.|-+..+.+++.+
T Consensus 92 ~~~~---~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 92 VIPP---QDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred CCCh---HhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 342 232 4777778877877777777665
No 216
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=29.88 E-value=95 Score=26.58 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=31.6
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeec
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 116 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIP 116 (381)
+.+.+.+.+++++||-+++-=-+.+.....++.++|++.+++ |--||
T Consensus 129 ~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~--v~~vP 175 (175)
T PF13727_consen 129 DLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVR--VRVVP 175 (175)
T ss_dssp -GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-E--EEE--
T ss_pred CHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCE--EEEeC
Confidence 468899999999999998888777788888888888877755 44455
No 217
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.62 E-value=4.5e+02 Score=24.15 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=27.2
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
..+.++.+...++|++++.+.+.. ....+.+.+.+.|++ +|.+
T Consensus 44 ~~~~i~~~~~~~~Dgiii~~~~~~--~~~~~i~~~~~~~iP--vV~~ 86 (282)
T cd06318 44 QIADVEDLLTRGVNVLIINPVDPE--GLVPAVAAAKAAGVP--VVVV 86 (282)
T ss_pred HHHHHHHHHHcCCCEEEEecCCcc--chHHHHHHHHHCCCC--EEEe
Confidence 456788899999999998775532 112233444556655 5544
No 218
>PLN02204 diacylglycerol kinase
Probab=29.51 E-value=68 Score=34.83 Aligned_cols=50 Identities=26% Similarity=0.395 Sum_probs=28.9
Q ss_pred hhhHhchhhcCC---ccccccCCCCchHHHHHHH---HHcCCcEEEEEcCCCcHHHH
Q 016855 46 PKVVNDIHKRGG---TILRTSRGGHDTNKIVDNI---EDRGINQVYIIGGDGTQKGA 96 (381)
Q Consensus 46 ~~~v~~i~~~GG---t~LGtsR~~~~~~~i~~~l---~~~~Id~LvvIGGdgS~~~a 96 (381)
|+.+..+....| .++-|.|.. +...+++.+ ...+.|++|++||||++.-+
T Consensus 179 ~~~V~p~f~~a~i~~~v~~T~~ag-hA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEV 234 (601)
T PLN02204 179 WETVSPIFIRAKVKTKVIVTERAG-HAFDVMASISNKELKSYDGVIAVGGDGFFNEI 234 (601)
T ss_pred HHHHHHHHHHcCCeEEEEEecCcc-hHHHHHHHHhhhhccCCCEEEEEcCccHHHHH
Confidence 334555554444 244444432 233333333 35678999999999998754
No 219
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=29.47 E-value=1.4e+02 Score=25.80 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=30.3
Q ss_pred CchHHHHHHHHHcCC-cEEEEEcCCCc---HHHHHHHHHHHHHcCCCceEeeeccc
Q 016855 67 HDTNKIVDNIEDRGI-NQVYIIGGDGT---QKGAALIYKEVEKRGLQVAVAGIPKT 118 (381)
Q Consensus 67 ~~~~~i~~~l~~~~I-d~LvvIGGdgS---~~~a~~L~~~~~~~g~~i~vIgIPkT 118 (381)
+.++++++.|++.++ +..+++||.-. -+.+.. .+++++.|+. -+.=|.|
T Consensus 65 ~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~-~~~L~~~Gv~--~vf~pgt 117 (128)
T cd02072 65 IDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDV-EKRFKEMGFD--RVFAPGT 117 (128)
T ss_pred HHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHH-HHHHHHcCCC--EEECcCC
Confidence 457888899999998 87788898843 333221 2334556753 3444444
No 220
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=29.36 E-value=94 Score=28.18 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=37.5
Q ss_pred EEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 159 IVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 159 iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+-+.-|...=-++++.||+. .|+++++=|-.-.+|. ...+.+.+++. .+.+..+|+++--
T Consensus 130 ~~~LSgG~~qrv~la~al~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tvi~~sH~ 191 (213)
T cd03235 130 IGELSGGQQQRVLLARALVQ-DPDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHD 191 (213)
T ss_pred cccCCHHHHHHHHHHHHHHc-CCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCCEEEEEeCC
Confidence 34555555567889999998 7999999765444442 22344544443 2245667777644
No 221
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=29.32 E-value=4.3e+02 Score=23.87 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=25.2
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
..++++.+...++|++++.+ .++-.....| +.+.+.+ +++|.+
T Consensus 44 ~~~~~~~~~~~~~dgii~~~-~~~~~~~~~l-~~l~~~~--ipvv~~ 86 (268)
T cd06323 44 QLNDIEDLITRGVDAIIINP-TDSDAVVPAV-KAANEAG--IPVFTI 86 (268)
T ss_pred HHHHHHHHHHcCCCEEEEcC-CChHHHHHHH-HHHHHCC--CcEEEE
Confidence 45677888888999999864 3332111223 3344445 446655
No 222
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=29.18 E-value=1.5e+02 Score=26.93 Aligned_cols=41 Identities=7% Similarity=0.177 Sum_probs=26.9
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
..+.++.|...++|++|+.+.+.+.. +.+.+.+.+++ +|.+
T Consensus 44 ~~~~i~~l~~~~~dgii~~~~~~~~~----~~~~~~~~~ip--vv~~ 84 (259)
T cd01542 44 EIEALELLARQKVDGIILLATTITDE----HREAIKKLNVP--VVVV 84 (259)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHH----HHHHHhcCCCC--EEEE
Confidence 45667888999999999998765432 22334445654 5544
No 223
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=29.16 E-value=3.5e+02 Score=22.82 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=45.2
Q ss_pred EcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhcCcceEEEEecCCC
Q 016855 87 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRY 166 (381)
Q Consensus 87 IGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~ 166 (381)
-||.|.=..+..|+..+.++|..+-+ +|=|..+.... . .+.|+-+-+ .
T Consensus 8 kgg~gkt~~~~~~a~~~~~~~~~~~~------vd~D~~~~~~~-----------------------y--d~VIiD~p~-~ 55 (139)
T cd02038 8 KGGVGKTNISANLALALAKLGKRVLL------LDADLGLANLD-----------------------Y--DYIIIDTGA-G 55 (139)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCcEEE------EECCCCCCCCC-----------------------C--CEEEEECCC-C
Confidence 37888877888899988888865322 67777655432 2 367777765 4
Q ss_pred ccHHHHHHhhhcCCccEEEcCCCC
Q 016855 167 SGFISMYATLASRDVDCCLIPESP 190 (381)
Q Consensus 167 aG~LAl~aaLA~~~ad~iliPE~~ 190 (381)
.+..+.. ++. .+|.+++|=.|
T Consensus 56 ~~~~~~~-~l~--~aD~vviv~~~ 76 (139)
T cd02038 56 ISDNVLD-FFL--AADEVIVVTTP 76 (139)
T ss_pred CCHHHHH-HHH--hCCeEEEEcCC
Confidence 5555543 333 47888887554
No 224
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=29.11 E-value=65 Score=29.11 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=17.6
Q ss_pred HHHHHcCCcEEEEEcCCCcHHH
Q 016855 74 DNIEDRGINQVYIIGGDGTQKG 95 (381)
Q Consensus 74 ~~l~~~~Id~LvvIGGdgS~~~ 95 (381)
+.+++++.|++|+-||-++-.-
T Consensus 37 ~~~~~~~~~~iilsgGP~~~~~ 58 (191)
T PRK06774 37 TDIEQLAPSHLVISPGPCTPNE 58 (191)
T ss_pred HHHHhcCCCeEEEcCCCCChHh
Confidence 4456778999999999998643
No 225
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=28.62 E-value=3.5e+02 Score=27.43 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee-ccccccCccCCCCCCChHHHHHHHHHHHHHHHH
Q 016855 70 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 148 (381)
Q Consensus 70 ~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI-PkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~ 148 (381)
-..++.+++.--+..|+-|.=.|..+|..|.+ .|.+.--||| |.+|.-==.-+-.-..--||+..++++....
T Consensus 139 i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~----aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~-- 212 (346)
T PRK05096 139 VQFVAKAREAWPDKTICAGNVVTGEMVEELIL----SGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGL-- 212 (346)
T ss_pred HHHHHHHHHhCCCCcEEEecccCHHHHHHHHH----cCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHc--
Confidence 34566677655555556666677777777754 4665333555 8877543222222223446666555554322
Q ss_pred hhhhcCcceEEEEecC-CCccHHHHHHhhhcCCccEEEcCC
Q 016855 149 EVESVENGVGIVKLMG-RYSGFISMYATLASRDVDCCLIPE 188 (381)
Q Consensus 149 tA~S~~~rv~iVEvMG-R~aG~LAl~aaLA~~~ad~iliPE 188 (381)
.+-||===| |++|+++-+.+ . |||.+.+-.
T Consensus 213 -------gvpiIADGGi~~sGDI~KAla--a-GAd~VMlGs 243 (346)
T PRK05096 213 -------GGQIVSDGGCTVPGDVAKAFG--G-GADFVMLGG 243 (346)
T ss_pred -------CCCEEecCCcccccHHHHHHH--c-CCCEEEeCh
Confidence 133332112 78999986554 4 688777653
No 226
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=28.58 E-value=93 Score=29.49 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=36.5
Q ss_pred EEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCceEEEEecC
Q 016855 159 IVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 159 iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~--~~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+-+.-|..-=-++++.|++. .|+++++=|-.-.+| ....+.+.+++..++.+..+|+++.-
T Consensus 141 ~~~LS~Gq~qrv~laral~~-~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~ 203 (265)
T PRK10253 141 VDTLSGGQRQRAWIAMVLAQ-ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD 203 (265)
T ss_pred cccCChHHHHHHHHHHHHhc-CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34454444556788999998 799999966543444 22234454544323336677777644
No 227
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=28.24 E-value=5.2e+02 Score=24.51 Aligned_cols=23 Identities=4% Similarity=0.134 Sum_probs=18.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCC
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDG 91 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdg 91 (381)
..++++.|...++|++|+.+.+.
T Consensus 106 ~~~~~~~l~~~~vdgiIi~~~~~ 128 (328)
T PRK11303 106 EMRCAEHLLQRQVDALIVSTSLP 128 (328)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCC
Confidence 45678889899999999988754
No 228
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=27.95 E-value=89 Score=24.61 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=30.5
Q ss_pred hcCCccccccCCCCchHHHHHHHHHcCCcEEEEEcCCCcHHH
Q 016855 54 KRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG 95 (381)
Q Consensus 54 ~~GGt~LGtsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~ 95 (381)
..++.+|=+. . ...+.+.+.|+++++..+++|||.++...
T Consensus 48 ~~~~PIll~~-~-~l~~~~~~~l~~~~~~~v~iiGg~~~is~ 87 (92)
T PF04122_consen 48 KNNAPILLVN-N-SLPSSVKAFLKSLNIKKVYIIGGEGAISD 87 (92)
T ss_pred hcCCeEEEEC-C-CCCHHHHHHHHHcCCCEEEEECCCCccCH
Confidence 3556677776 3 33478888899999999999999998753
No 229
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=27.83 E-value=1.7e+02 Score=31.19 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=40.3
Q ss_pred HHHHcCCcEEEEEcCCCcHHHHH--HHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 016855 75 NIEDRGINQVYIIGGDGTQKGAA--LIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 152 (381)
Q Consensus 75 ~l~~~~Id~LvvIGGdgS~~~a~--~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S 152 (381)
.+.+. +|++++-||.|.--..- .-.++++++++ +..|| |+|++.|+=..++.+-.+. .|.|
T Consensus 339 ~~~~~-~dgIlVPGGFG~RG~eGkI~Ai~yAREn~i--P~lGI-------------ClGmQ~aviE~ARnv~Gl~-~AnS 401 (533)
T COG0504 339 ELEKL-VDGILVPGGFGYRGVEGKIAAIRYARENNI--PFLGI-------------CLGMQLAVIEFARNVLGLE-GANS 401 (533)
T ss_pred hhhhc-CCEEEeCCCCCcCchHHHHHHHHHHHhcCC--CEEEE-------------chhHHHHHHHHHHHhcCCc-cCcc
Confidence 34443 99999999999632222 33455555553 35655 9999999988877665443 4555
Q ss_pred c
Q 016855 153 V 153 (381)
Q Consensus 153 ~ 153 (381)
.
T Consensus 402 ~ 402 (533)
T COG0504 402 T 402 (533)
T ss_pred c
Confidence 3
No 230
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.56 E-value=1.7e+02 Score=28.24 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=38.9
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 118 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkT 118 (381)
..++.++.+++.|+|++++- |=.+..+..+.+.+.++|+..-...-|.|
T Consensus 105 G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 57889999999999999995 77888888888888888986434445544
No 231
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=27.51 E-value=1.5e+02 Score=26.85 Aligned_cols=59 Identities=24% Similarity=0.310 Sum_probs=35.8
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+.-|...=-++++.||+. .|+++++=|---.+|. ...+.+.+++..++.+..+|+++--
T Consensus 140 ~LS~G~~qrv~la~al~~-~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 140 ELSGGQQQRVAIARALAN-DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred hcCHHHHHHHHHHHHHcc-CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 333333445888999999 7999999776544442 2334454544333246677777744
No 232
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=27.48 E-value=99 Score=32.06 Aligned_cols=50 Identities=24% Similarity=0.458 Sum_probs=31.5
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccccc
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 121 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDN 121 (381)
.++.++.++-.. |.++|.|||||.... +.-.++.++-..+|--+|.--||
T Consensus 106 ak~l~e~~~t~~-Dii~VaGGDGT~~eV--VTGi~Rrr~~~~pv~~~P~G~~~ 155 (535)
T KOG4435|consen 106 AKALAEAVDTQE-DIIYVAGGDGTIGEV--VTGIFRRRKAQLPVGFYPGGYDN 155 (535)
T ss_pred HHHHHHHhccCC-CeEEEecCCCcHHHh--hHHHHhcccccCceeeccCccch
Confidence 455666666666 999999999998653 33334444434455556655443
No 233
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=27.46 E-value=55 Score=29.12 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=27.5
Q ss_pred CCCCchHHHHHHHHHcCCcEEEEEcCCC-cHHHHHHHHHHHHHcCCCceEeeeccc
Q 016855 64 RGGHDTNKIVDNIEDRGINQVYIIGGDG-TQKGAALIYKEVEKRGLQVAVAGIPKT 118 (381)
Q Consensus 64 R~~~~~~~i~~~l~~~~Id~LvvIGGdg-S~~~a~~L~~~~~~~g~~i~vIgIPkT 118 (381)
|.++...+.++++++.+++.+|.+-|-. .+-+ .++-. ...+|||||-.
T Consensus 39 R~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpg--vva~~-----t~~PVIgvP~~ 87 (150)
T PF00731_consen 39 RTPERLLEFVKEYEARGADVIIAVAGMSAALPG--VVASL-----TTLPVIGVPVS 87 (150)
T ss_dssp TSHHHHHHHHHHTTTTTESEEEEEEESS--HHH--HHHHH-----SSS-EEEEEE-
T ss_pred CCHHHHHHHHHHhccCCCEEEEEECCCcccchh--hheec-----cCCCEEEeecC
Confidence 4445566677777777788777665543 2322 23321 35679999954
No 234
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=27.45 E-value=65 Score=35.19 Aligned_cols=54 Identities=6% Similarity=0.217 Sum_probs=39.8
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccC
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 122 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDND 122 (381)
.+++.++..|.+ .+|.+++|||-.|-.+ .+|++-+++.|.+.-.|-=|.=||-+
T Consensus 194 ~~Rq~a~~~la~-~~d~~~vvGg~~SsNt-~~L~~i~~~~~~~~~~ie~~~el~~~ 247 (647)
T PRK00087 194 EVRQEAAEKLAK-KVDVMIVVGGKNSSNT-TKLYEICKSNCTNTIHIENAGELPEE 247 (647)
T ss_pred hhHHHHHHHHHh-hCCEEEEECCCCCccH-HHHHHHHHHHCCCEEEECChHHCCHH
Confidence 357888888874 6999999999999866 46778887777654455556666554
No 235
>PRK09492 treR trehalose repressor; Provisional
Probab=27.34 E-value=5.3e+02 Score=24.29 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=17.4
Q ss_pred hHHHHHHHHHcCCcEEEEEcC
Q 016855 69 TNKIVDNIEDRGINQVYIIGG 89 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGG 89 (381)
..+.++.|...++|++|+.+-
T Consensus 107 ~~~~~~~l~~~~vdgiIi~~~ 127 (315)
T PRK09492 107 VNEHLGVLKRRNVDGVILFGF 127 (315)
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 346678899999999999874
No 236
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=27.30 E-value=1e+02 Score=29.28 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=35.6
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+.-|...=-++++.+|+. .|+++++=|---.+|. ...+.+.+++..++.+..+|+++--
T Consensus 133 ~LSgGqkqrl~laraL~~-~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd 193 (257)
T PRK11247 133 ALSGGQKQRVALARALIH-RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193 (257)
T ss_pred hCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 444444445888999998 7999999766444442 2234454444333345667777643
No 237
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=27.25 E-value=3.6e+02 Score=28.44 Aligned_cols=102 Identities=11% Similarity=0.079 Sum_probs=64.4
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCC-ceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ-VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~-i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~ 147 (381)
...+++.+++.-.+..|+.|.=.|..+|..|.+ .|.+ +.|=+=|.||.+-=..++..+--.||+-.++++....
T Consensus 253 ~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~----~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~- 327 (475)
T TIGR01303 253 MISAIKAVRALDLGVPIVAGNVVSAEGVRDLLE----AGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL- 327 (475)
T ss_pred HHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHH----hCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc-
Confidence 456778888876676666665677888888765 4765 4555669999977666665555566665555554322
Q ss_pred HhhhhcCcceEEEEecC--CCccHHHHHHhhhcCCccEEEcC
Q 016855 148 VEVESVENGVGIVKLMG--RYSGFISMYATLASRDVDCCLIP 187 (381)
Q Consensus 148 ~tA~S~~~rv~iVEvMG--R~aG~LAl~aaLA~~~ad~iliP 187 (381)
.+.|+ ..| |++|.++-+.+ . ||+.+.+-
T Consensus 328 --------~~~vi-adGgi~~~~di~kala--~-GA~~vm~g 357 (475)
T TIGR01303 328 --------GGHVW-ADGGVRHPRDVALALA--A-GASNVMVG 357 (475)
T ss_pred --------CCcEE-EeCCCCCHHHHHHHHH--c-CCCEEeec
Confidence 13333 233 67788876554 3 57766654
No 238
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=27.20 E-value=94 Score=23.01 Aligned_cols=45 Identities=18% Similarity=0.410 Sum_probs=26.5
Q ss_pred CChhhHhchhhcCCccccccCCCCchHHHHHHHHHcCCcEEEEEcCC-CcHHHHHHHHHHH
Q 016855 44 LSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGD-GTQKGAALIYKEV 103 (381)
Q Consensus 44 L~~~~v~~i~~~GGt~LGtsR~~~~~~~i~~~l~~~~Id~LvvIGGd-gS~~~a~~L~~~~ 103 (381)
++...|+.+.++| .+.+++++.|++.||+.+ | .+..+.+++.+++
T Consensus 8 i~~~lVd~F~~mG----------F~~dkVvevlrrlgik~~-----n~~dn~t~~~ilEEL 53 (55)
T PF09288_consen 8 IDKDLVDQFENMG----------FERDKVVEVLRRLGIKSM-----NGVDNETENKILEEL 53 (55)
T ss_dssp -SHHHHHHHHHHT------------HHHHHHHHHHS--SS-------SS--HHHHHHHHHH
T ss_pred CCHHHHHHHHHcC----------CcHHHHHHHHHHhCCCCC-----CCccchhHHHHHHHH
Confidence 4555566666654 568999999999999865 3 3456677777765
No 239
>PLN02335 anthranilate synthase
Probab=27.03 E-value=94 Score=29.08 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=30.4
Q ss_pred HHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHH
Q 016855 76 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 134 (381)
Q Consensus 76 l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdT 134 (381)
+++++.|++|+-||-++-.......+...+.+-.++|.|| |.||.-
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI-------------ClG~Ql 103 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV-------------CMGLQC 103 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe-------------cHHHHH
Confidence 4567899999999999876543333333333434556665 999983
No 240
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.91 E-value=1.7e+02 Score=26.70 Aligned_cols=60 Identities=25% Similarity=0.276 Sum_probs=37.9
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
-+.-|..-=-++++.||+. .|+++++=|---.+|. ...+.+.|++..++.+..+|+++--
T Consensus 130 ~~LSgG~~qrl~la~al~~-~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 191 (220)
T cd03293 130 HQLSGGMRQRVALARALAV-DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191 (220)
T ss_pred ccCCHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 3454555556889999999 7999999876544542 2234455554333446677777644
No 241
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=26.56 E-value=1.6e+02 Score=27.13 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=35.8
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEec
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAE 219 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsE 219 (381)
+.-|...=-++++.||+. .|+++++=|-.-.+|. ...+.+.+++..++++..+|+++-
T Consensus 132 ~LS~G~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 191 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLH-RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATH 191 (236)
T ss_pred hCCHHHHHHHHHHHHHhc-CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 343334445788999998 7999999776555542 233455555433334667777763
No 242
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=26.54 E-value=4.9e+02 Score=23.59 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=67.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccC-c--cCCCCCCChHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND-I--AVIDKSFGFDTAVEEAQRAINA 145 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDND-i--~~tD~tiGFdTA~~~~~~ai~~ 145 (381)
..+.++++.+.++|++++..-+.+... .+.+.+.+.|+ +||. +|+| . .....++|+|.- .......+.
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~--~~l~~~~~~gI--pvv~----~d~~~~~~~~~~~~v~~d~~-~~G~~~a~~ 114 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLA--PFLEKAKAAGI--PVVT----VDSDEAPDSPRAAYVGTDNY-EAGKLAAEY 114 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTH--HHHHHHHHTTS--EEEE----ESSTHHTTSTSSEEEEE-HH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHH--HHHHHHhhcCc--eEEE----EeccccccccceeeeeccHH-HHHHHHHHH
Confidence 556788899999999999888875432 33355666675 4664 6777 2 333457777633 344444444
Q ss_pred HHHhhhhcCcceEEEEecCCCccHHH-------HHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCC
Q 016855 146 AHVEVESVENGVGIVKLMGRYSGFIS-------MYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 211 (381)
Q Consensus 146 l~~tA~S~~~rv~iVEvMGR~aG~LA-------l~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~~ 211 (381)
+....... ..+.++ ....++.. ...+|.. .+++-++++..+.-....+-.+.+.+.++.+.
T Consensus 115 l~~~~~~~-~~v~~~---~~~~~~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 182 (257)
T PF13407_consen 115 LAEKLGAK-GKVLIL---SGSPGNPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP 182 (257)
T ss_dssp HHHHHTTT-EEEEEE---ESSTTSHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT
T ss_pred HHHHhccC-ceEEec---cCCCCchHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC
Confidence 44444332 234444 12222222 1224444 35677766432211122244555666666554
No 243
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.43 E-value=1.5e+02 Score=25.97 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=32.3
Q ss_pred cHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEec
Q 016855 168 GFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAE 219 (381)
Q Consensus 168 G~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsE 219 (381)
=-++++.||+. .|+++++=|-.-.+|. ...+.+.+++..+ ++..+|+++-
T Consensus 102 qrv~laral~~-~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~th 153 (173)
T cd03230 102 QRLALAQALLH-DPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSH 153 (173)
T ss_pred HHHHHHHHHHc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEECC
Confidence 45788899998 7999999887665553 2234455554333 3556666653
No 244
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.37 E-value=1e+02 Score=29.57 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=38.3
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
..++-++.+++.|++++++- |-.......+.+.++++|++.-.+.-|.|=
T Consensus 103 G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~ 152 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNAD 152 (256)
T ss_pred hHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 35788889999999998888 677777778888888888765445566653
No 245
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=26.13 E-value=1.8e+02 Score=24.81 Aligned_cols=55 Identities=25% Similarity=0.228 Sum_probs=33.3
Q ss_pred ecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCceEEEEec
Q 016855 162 LMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAE 219 (381)
Q Consensus 162 vMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~~~~iIvVsE 219 (381)
.-|...=-++++.||+. .|+++++-|-.-.+|. +-.+.+.+.+++-+..+++++.
T Consensus 71 lS~G~~~rv~laral~~-~p~illlDEP~~~LD~--~~~~~l~~~l~~~~~til~~th 125 (144)
T cd03221 71 LSGGEKMRLALAKLLLE-NPNLLLLDEPTNHLDL--ESIEALEEALKEYPGTVILVSH 125 (144)
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEeCCccCCCH--HHHHHHHHHHHHcCCEEEEEEC
Confidence 44444445788899998 7999999887666653 1223333334333446666653
No 246
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=25.80 E-value=1.2e+02 Score=27.31 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=36.7
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCceEEEEecCC
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVAEGA 221 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~--~~~~~~~~I~~~~~~~~~~iIvVsEG~ 221 (381)
-+.-|...=.++++.||+. .|+++++=|-.-.+| ....+.+.+++ +.+.+..+|+++.-.
T Consensus 124 ~~LS~G~~qrl~laral~~-~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~g~tiii~sH~~ 185 (201)
T cd03231 124 AQLSAGQQRRVALARLLLS-GRPLWILDEPTTALDKAGVARFAEAMAG-HCARGGMVVLTTHQD 185 (201)
T ss_pred hhCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecCc
Confidence 3444445556888999998 799999966544444 22334444443 333456777777543
No 247
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=25.80 E-value=4.3e+02 Score=27.98 Aligned_cols=96 Identities=21% Similarity=0.242 Sum_probs=46.3
Q ss_pred HHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee-ccccccCccCCCC--CCChHH--HHHHHHHHHHHH
Q 016855 72 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDK--SFGFDT--AVEEAQRAINAA 146 (381)
Q Consensus 72 i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI-PkTIDNDi~~tD~--tiGFdT--A~~~~~~ai~~l 146 (381)
.++.+++.--+..|+.|.-.|...|..+.+ .|.+.-.+|+ |.+|. .|.. -+|.++ |+..+++
T Consensus 272 ~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~----aGad~I~vg~g~Gs~~----~t~~~~~~g~p~~~ai~~~~~----- 338 (495)
T PTZ00314 272 MIKKLKSNYPHVDIIAGNVVTADQAKNLID----AGADGLRIGMGSGSIC----ITQEVCAVGRPQASAVYHVAR----- 338 (495)
T ss_pred HHHHHHhhCCCceEEECCcCCHHHHHHHHH----cCCCEEEECCcCCccc----ccchhccCCCChHHHHHHHHH-----
Confidence 445555543345555555555556555543 3655333444 66652 1211 144443 3333333
Q ss_pred HHhhhhcCcceEEEEecC-CCccHHHHHHhhhcCCccEEEcC
Q 016855 147 HVEVESVENGVGIVKLMG-RYSGFISMYATLASRDVDCCLIP 187 (381)
Q Consensus 147 ~~tA~S~~~rv~iVEvMG-R~aG~LAl~aaLA~~~ad~iliP 187 (381)
-+... .+-++=-=| |+++.++-+.++ |||.+.+-
T Consensus 339 --~~~~~--~v~vIadGGi~~~~di~kAla~---GA~~Vm~G 373 (495)
T PTZ00314 339 --YARER--GVPCIADGGIKNSGDICKALAL---GADCVMLG 373 (495)
T ss_pred --HHhhc--CCeEEecCCCCCHHHHHHHHHc---CCCEEEEC
Confidence 23222 233433234 788888766553 57777654
No 248
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=25.78 E-value=1.7e+02 Score=26.47 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=37.6
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+.-|...=-++++.+++. .|+++++=|-.-.+|. ...+.+.+++..++.+..+|+++--
T Consensus 128 ~LS~G~~qrl~laral~~-~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~ 188 (213)
T TIGR01277 128 QLSGGQRQRVALARCLVR-PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188 (213)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 454444556788889998 7999999776555542 2234455554433346677777744
No 249
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=25.48 E-value=1.3e+02 Score=27.90 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=36.9
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
-+.-|...=-++++.||+. .|+++++=|---.+|. ...+.+.|++..++.+..+|+++--
T Consensus 144 ~~LSgG~~qrv~la~al~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~ 205 (243)
T TIGR02315 144 DQLSGGQQQRVAIARALAQ-QPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205 (243)
T ss_pred ccCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4454444556889999998 7999998765444442 2334455554333345667777643
No 250
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=25.47 E-value=6.3e+02 Score=24.48 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeec
Q 016855 70 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 116 (381)
Q Consensus 70 ~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIP 116 (381)
.+.++.|...++|++|+.+.+..... ..+ +.+.+.|++ +|.+-
T Consensus 71 ~~~i~~l~~~~vdgiIi~~~~~~~~~-~~l-~~l~~~giP--vV~vd 113 (330)
T PRK15395 71 NDQIDVLLAKGVKALAINLVDPAAAP-TVI-EKARGQDVP--VVFFN 113 (330)
T ss_pred HHHHHHHHHcCCCEEEEeccCHHHHH-HHH-HHHHHCCCc--EEEEc
Confidence 35778899999999999987754332 223 444555655 56553
No 251
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=25.47 E-value=1.5e+02 Score=27.96 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=35.2
Q ss_pred ecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 162 LMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 162 vMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
.-|..-=-++++.+|+. .|+++++=|---.+|. ...+.+.|++..++.+..+|+++--
T Consensus 116 LSgGe~qrv~iaraL~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 116 LSGGELQRVAIAACLSK-DADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 33333345778889998 7999999877555552 2234444444333346677777644
No 252
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=25.35 E-value=1.6e+02 Score=27.34 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=36.1
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+.-|...=-++++.+|+. .|+++++=|-.-.+|. ...+.+.|++..++++..||+++--
T Consensus 153 ~LS~G~~qrl~la~al~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 213 (236)
T cd03267 153 QLSLGQRMRAEIAAALLH-EPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213 (236)
T ss_pred hCCHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 344444456788999998 7999999887655552 2234444443323335677776643
No 253
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=25.34 E-value=1.6e+02 Score=26.27 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=30.0
Q ss_pred HHHcCCcEEEEEcCCCcHHH---HHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHH
Q 016855 76 IEDRGINQVYIIGGDGTQKG---AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 139 (381)
Q Consensus 76 l~~~~Id~LvvIGGdgS~~~---a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~ 139 (381)
+...+.|++|+-||.++... ..++.+++.+++ ++|.|| |.|+.......
T Consensus 35 ~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~--~PvlGI-------------C~G~Q~l~~~~ 86 (178)
T cd01744 35 ILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKK--IPIFGI-------------CLGHQLLALAL 86 (178)
T ss_pred HhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCC--CCEEEE-------------CHHHHHHHHHc
Confidence 35568999999999876433 223334443444 345655 88887655544
No 254
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.08 E-value=1.7e+02 Score=26.50 Aligned_cols=59 Identities=20% Similarity=0.153 Sum_probs=36.5
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEec
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAE 219 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsE 219 (381)
-+.-|..-=.++++.+++. .|+++++=|-.-.+|. ...+.+.+++..++.+..+|+++-
T Consensus 130 ~~LS~G~~qrv~la~al~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 190 (214)
T cd03297 130 AQLSGGEKQRVALARALAA-QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTH 190 (214)
T ss_pred ccCCHHHHHHHHHHHHHhc-CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEec
Confidence 3444444456888999998 7999999886555552 223444444433333566777763
No 255
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=25.04 E-value=1.8e+02 Score=30.32 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCc-HHHHHHHHHHHHHcCCC
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQ 109 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS-~~~a~~L~~~~~~~g~~ 109 (381)
..-.+|++.|++.++|+.|....=|| -+.+....+++++.|++
T Consensus 323 ~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiP 366 (431)
T TIGR01918 323 QFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIP 366 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCC
Confidence 35678999999999999999988776 34455667888888876
No 256
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.03 E-value=1.3e+02 Score=27.92 Aligned_cols=59 Identities=24% Similarity=0.225 Sum_probs=35.4
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+.-|...=-++++.||+. .|+++++=|---.+|. ...+.+.+++..++.+..+|+++--
T Consensus 135 ~LS~G~~qrv~laral~~-~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 135 ELSGGQQQRVGVARALAA-DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred hCCHHHHHHHHHHHHHhc-CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 333333445888999998 7999999776444442 2234454554333336677777643
No 257
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=24.80 E-value=1.7e+02 Score=26.32 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=39.2
Q ss_pred EEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 159 IVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 159 iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+-+.-|...=.++++.||+. .|+++++=|-.-.+|. ...+.+.+++..++.+..+|+++--
T Consensus 128 ~~~LS~G~~qr~~laral~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~ 190 (213)
T cd03301 128 PKQLSGGQRQRVALGRAIVR-EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD 190 (213)
T ss_pred hhhCCHHHHHHHHHHHHHhc-CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 34555666667889999998 7999999877555542 2234455554433346677777643
No 258
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.74 E-value=1.8e+02 Score=26.35 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=36.3
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+.-|..-=-++++.+|+. .|+++++=|---.+|. ...+.+.+++..++.+..||+++--
T Consensus 130 ~LSgG~~qrl~la~al~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 190 (213)
T cd03259 130 ELSGGQQQRVALARALAR-EPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190 (213)
T ss_pred hCCHHHHHHHHHHHHHhc-CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 343334445888999998 7999999776555542 2234455554333346677777643
No 259
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.29 E-value=1.4e+02 Score=27.55 Aligned_cols=59 Identities=25% Similarity=0.264 Sum_probs=35.5
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+.-|..-=-++++.||+. .|+++++=|---.+|. ...+.+.+++..++.+..||+++--
T Consensus 136 ~LSgG~~qrv~ia~al~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~ 196 (235)
T cd03261 136 ELSGGMKKRVALARALAL-DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD 196 (235)
T ss_pred hCCHHHHHHHHHHHHHhc-CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 343333445888999998 7999999876444442 2234454544333235677777643
No 260
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=24.07 E-value=6.2e+02 Score=23.96 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=18.1
Q ss_pred hHHHHHHHHHcCCcEEEEEcCC
Q 016855 69 TNKIVDNIEDRGINQVYIIGGD 90 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGd 90 (381)
..+.++.|...++|++|+++..
T Consensus 104 ~~~~~~~l~~~~vdGvIi~~~~ 125 (311)
T TIGR02405 104 TNEHLSVLQKRNVDGVILFGFT 125 (311)
T ss_pred HHHHHHHHHhcCCCEEEEeCCC
Confidence 4466788999999999999854
No 261
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=23.98 E-value=1.2e+02 Score=29.12 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=37.7
Q ss_pred hhHhchhhcCCc--ccc-ccCCC--CchHHHHHHHHHcCCcEEEEEcCCCcHH------------HHHHHHHHHHH
Q 016855 47 KVVNDIHKRGGT--ILR-TSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQK------------GAALIYKEVEK 105 (381)
Q Consensus 47 ~~v~~i~~~GGt--~LG-tsR~~--~~~~~i~~~l~~~~Id~LvvIGGdgS~~------------~a~~L~~~~~~ 105 (381)
.....+...+|- +.. |+|.. ...+..+..+...||+.+++++||-.-. .|..|.+..++
T Consensus 48 ~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~ 123 (274)
T cd00537 48 LAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRK 123 (274)
T ss_pred HHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 344455566552 222 34432 3577888889999999999999986543 25666665544
No 262
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=23.89 E-value=2e+02 Score=30.06 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=34.1
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCc-HHHHHHHHHHHHHcCCCc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQV 110 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS-~~~a~~L~~~~~~~g~~i 110 (381)
.-++|++.|++.++|++|..-.=|| -+.+....+++++.|+++
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPv 367 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 4678999999999999999977666 344456678888888763
No 263
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=23.88 E-value=1.8e+02 Score=27.20 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=36.2
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+.-|..-=-++++.||+. +|+++++=|---.+|. ...+.+.+++..++.+..+|+++.-
T Consensus 148 ~LSgG~~qrv~laral~~-~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~ 208 (253)
T TIGR02323 148 AFSGGMQQRLQIARNLVT-RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208 (253)
T ss_pred hcCHHHHHHHHHHHHHhc-CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 333333345788889998 7999999766444442 2234455554434446677777754
No 264
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.76 E-value=2e+02 Score=26.44 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=37.3
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
-+.-|...=.++++.||+. .|+++++=|-.-.+|. ...+.+.+++..++.+..+|+++--
T Consensus 139 ~~LS~G~~qrv~la~al~~-~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 139 AQLSGGQKQRVGIARALAN-NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred hhCCHHHHHHHHHHHHHhc-CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3444444556888999998 7999999876545542 2234455554333346677777643
No 265
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.65 E-value=4.5e+02 Score=22.79 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=25.2
Q ss_pred HhchhhcCCcccccc-CC---CCchHHHHHHHHHcCC-cEEEEEcCCCc
Q 016855 49 VNDIHKRGGTILRTS-RG---GHDTNKIVDNIEDRGI-NQVYIIGGDGT 92 (381)
Q Consensus 49 v~~i~~~GGt~LGts-R~---~~~~~~i~~~l~~~~I-d~LvvIGGdgS 92 (381)
++......-.++|-| .. .+.+.++++.|++.++ +..+++||.-.
T Consensus 45 v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~v 93 (134)
T TIGR01501 45 IKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLV 93 (134)
T ss_pred HHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcC
Confidence 334444444455533 22 1356778888888887 44566787643
No 266
>PRK02399 hypothetical protein; Provisional
Probab=23.51 E-value=1.2e+02 Score=31.33 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=38.7
Q ss_pred eCChhhHhchhhcCCcccccc--CCC------CchHHHHHHHH-HcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEe
Q 016855 43 TLSPKVVNDIHKRGGTILRTS--RGG------HDTNKIVDNIE-DRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVA 113 (381)
Q Consensus 43 ~L~~~~v~~i~~~GGt~LGts--R~~------~~~~~i~~~l~-~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vI 113 (381)
+++..+|......+...+.+. |.. ....++++.|- +.+|++++-+||-+.=.-|....+ .+| +
T Consensus 49 dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~ga~~~v~~L~~~g~i~gviglGGs~GT~lat~aMr-----~LP---i 120 (406)
T PRK02399 49 DISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEGAAAFVRELYERGDVAGVIGLGGSGGTALATPAMR-----ALP---I 120 (406)
T ss_pred CCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCcchHHHHHHHHH-----hCC---C
Confidence 556666655443332233333 322 12344444443 456999999999886544444333 356 8
Q ss_pred eecccc
Q 016855 114 GIPKTI 119 (381)
Q Consensus 114 gIPkTI 119 (381)
|+||=|
T Consensus 121 G~PKlm 126 (406)
T PRK02399 121 GVPKLM 126 (406)
T ss_pred CCCeEE
Confidence 899966
No 267
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=23.29 E-value=1.8e+02 Score=26.50 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=28.8
Q ss_pred HHHHHhhhcCCccEEEcCCCCCCCCC--hh-hHHHHHHHHHHhC-CceEEEEec
Q 016855 170 ISMYATLASRDVDCCLIPESPFYLEG--PG-GLFEFIERQLKEN-GHMVIVVAE 219 (381)
Q Consensus 170 LAl~aaLA~~~ad~iliPE~~~~~~~--~~-~~~~~I~~~~~~~-~~~iIvVsE 219 (381)
+|+..+++. .|+++++-|-.-.+|. .. .+.+.+++ +.+. +..+|+++-
T Consensus 130 lala~al~~-~p~illlDEP~~~LD~~~~~~~l~~~l~~-~~~~~~~~iiiitH 181 (204)
T cd03240 130 LALAETFGS-NCGILALDEPTTNLDEENIEESLAEIIEE-RKSQKNFQLIVITH 181 (204)
T ss_pred HHHHHHhcc-CCCEEEEcCCccccCHHHHHHHHHHHHHH-HHhccCCEEEEEEe
Confidence 455667777 7999999887655553 22 33344433 3333 567777774
No 268
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.21 E-value=5.6e+02 Score=23.16 Aligned_cols=79 Identities=8% Similarity=0.054 Sum_probs=39.2
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccC-CC-CCCChHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV-ID-KSFGFDTAVEEAQRAINAA 146 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~-tD-~tiGFdTA~~~~~~ai~~l 146 (381)
.+.+.+.+.+.++|++|+...+..-. ..+.+.+.|++ +|.+ |++.+. .. .+++.|-. ....++.+.+
T Consensus 49 ~~~~~~~~~~~~~dgiii~~~~~~~~----~~~~~~~~~ip--vV~~----~~~~~~~~~~~~v~~d~~-~~g~~~~~~l 117 (270)
T cd06294 49 LEEVKKMIQQKRVDGFILLYSREDDP----IIDYLKEEKFP--FVVI----GKPEDDKENITYVDNDNI-QAGYDATEYL 117 (270)
T ss_pred HHHHHHHHHHcCcCEEEEecCcCCcH----HHHHHHhcCCC--EEEE----CCCCCCCCCCCeEEECcH-HHHHHHHHHH
Confidence 34455556777899999997654322 22334455644 6644 555432 11 23454421 2222333333
Q ss_pred HHhhhhcCcceEEEE
Q 016855 147 HVEVESVENGVGIVK 161 (381)
Q Consensus 147 ~~tA~S~~~rv~iVE 161 (381)
... .| +++.++-
T Consensus 118 ~~~--g~-~~i~~i~ 129 (270)
T cd06294 118 IKL--GH-KKIAFVG 129 (270)
T ss_pred HHc--CC-ccEEEec
Confidence 322 45 4577663
No 269
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=23.13 E-value=2.1e+02 Score=26.00 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=36.0
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+.-|...=-++++.+|+. .|+++++=|-.-.+|. ...+.+.|++..++.+..||+++--
T Consensus 145 ~LS~G~~qrv~laral~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 145 ELSGGQRQRVAIARALAL-NPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred hcCHHHHHHHHHHHHHhc-CCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 343444445888889998 7999999776545542 2334455554333335667777643
No 270
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=23.11 E-value=2.1e+02 Score=26.38 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=37.5
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
-+.-|...=-++++.+|+. .|+++++=|-.-.+|. ...+.+.+++..++.+..+|+++--
T Consensus 113 ~~LSgG~~qrv~la~al~~-~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 174 (230)
T TIGR01184 113 GQLSGGMKQRVAIARALSI-RPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174 (230)
T ss_pred hhCCHHHHHHHHHHHHHHc-CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3454555556788899998 7999999886545542 2234444444333346677877754
No 271
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=23.10 E-value=2.7e+02 Score=25.97 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=38.8
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCC--cHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDG--TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 127 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdg--S~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD 127 (381)
+.+++++.+.+.|-|++ .|||-. +......+.+.+++. .+++|+--|.+.+.=.++-|
T Consensus 12 ~~~~ia~~v~~~gtDaI-~VGGS~gvt~~~~~~~v~~ik~~-~~lPvilfp~~~~~i~~~aD 71 (205)
T TIGR01769 12 EIEKIAKNAKDAGTDAI-MVGGSLGIVESNLDQTVKKIKKI-TNLPVILFPGNVNGLSRYAD 71 (205)
T ss_pred HHHHHHHHHHhcCCCEE-EEcCcCCCCHHHHHHHHHHHHhh-cCCCEEEECCCccccCcCCC
Confidence 45677889999999977 566664 344445555655542 46778889998886554443
No 272
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.08 E-value=1.9e+02 Score=26.55 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=36.6
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
-+.-|...=-++++.||+. .|+++++=|---.+|. ...+.+.+++..++.+..||+++--
T Consensus 143 ~~LS~G~~qrv~la~al~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 204 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQ-QPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ 204 (241)
T ss_pred ccCCHHHHHHHHHHHHHhc-CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3444444445889999999 7999998776555542 2234444444333346677777644
No 273
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.99 E-value=1.7e+02 Score=23.92 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCcEEEEEcC-CCcHHHHHHHHHHHHHc
Q 016855 70 NKIVDNIEDRGINQVYIIGG-DGTQKGAALIYKEVEKR 106 (381)
Q Consensus 70 ~~i~~~l~~~~Id~LvvIGG-dgS~~~a~~L~~~~~~~ 106 (381)
+.+++.+.+.+-|.+.+-.- ...+..+..+.+.+++.
T Consensus 40 ~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~ 77 (119)
T cd02067 40 EEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEA 77 (119)
T ss_pred HHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHc
Confidence 34444445555553333332 22333444444444444
No 274
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.95 E-value=2.2e+02 Score=27.90 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=42.0
Q ss_pred hhcCCccccccCCC---CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 53 HKRGGTILRTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 53 ~~~GGt~LGtsR~~---~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
...|+.+.+..+++ .|+...+..++..+-|.++++ +.++- +..+.+.+++.|++.+++++
T Consensus 173 ~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~-~~~~~--~~~~~~~~~~~G~~~~~~~~ 235 (357)
T cd06337 173 ADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGF-AIPPD--FATFWRQAAQAGFKPKIVTI 235 (357)
T ss_pred HhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeC-CCccH--HHHHHHHHHHCCCCCCeEEE
Confidence 34688888877764 478889999999999997644 45442 23355666777887666654
No 275
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=22.86 E-value=2.1e+02 Score=26.01 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=36.0
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEec
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAE 219 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsE 219 (381)
+.-|...=-++++.+|+. .|+++++=|-.-.+|. ...+.+.+++..++.+..+|+++-
T Consensus 141 ~LS~G~~qrv~laral~~-~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH 200 (221)
T TIGR02211 141 ELSGGERQRVAIARALVN-QPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTH 200 (221)
T ss_pred hCCHHHHHHHHHHHHHhC-CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 444444557889999998 7999999776545542 223445454433334566777764
No 276
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.82 E-value=5.6e+02 Score=23.26 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=27.7
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeec
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 116 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIP 116 (381)
..++++.+...++|++++.+-+... ....+ +.+++.|+ ++|.+-
T Consensus 44 ~~~~~~~~~~~~vdgiii~~~~~~~-~~~~~-~~~~~~~i--pvV~~~ 87 (267)
T cd06322 44 QLSDVEDFITKKVDAIVLSPVDSKG-IRAAI-AKAKKAGI--PVITVD 87 (267)
T ss_pred HHHHHHHHHHcCCCEEEEcCCChhh-hHHHH-HHHHHCCC--CEEEEc
Confidence 4567788889999999998765432 11223 34445564 466663
No 277
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.78 E-value=1.9e+02 Score=26.69 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=35.5
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+.-|...=-++++.||+. +|+++++=|---.+|. ...+.+.+++..++.+..+|+++--
T Consensus 136 ~LS~G~~qrl~la~al~~-~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 196 (239)
T cd03296 136 QLSGGQRQRVALARALAV-EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196 (239)
T ss_pred hCCHHHHHHHHHHHHHhc-CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 444444445889999998 7999999876544542 2234444444333335567777643
No 278
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.75 E-value=2.1e+02 Score=26.05 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=38.2
Q ss_pred EEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 159 IVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 159 iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+-+.-|...=.++++.|++. +|+++++=|-.-.+|. ...+.+.+++..++.+..+|+++--
T Consensus 129 ~~~LS~G~~qr~~la~al~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~ 191 (220)
T cd03265 129 VKTYSGGMRRRLEIARSLVH-RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY 191 (220)
T ss_pred hhhCCHHHHHHHHHHHHHhc-CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34555555566899999999 7999998876555542 2234454444333335677777654
No 279
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=22.74 E-value=1.5e+02 Score=26.70 Aligned_cols=58 Identities=12% Similarity=0.246 Sum_probs=35.1
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCceEEEEecC
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~--~~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+.-|...=.++++.||+. .|+++++=|-.-.+| ....+.+.|++ +.+++..+|+++--
T Consensus 136 ~LS~G~~qrv~laral~~-~p~llllDEPt~~LD~~~~~~~~~~l~~-~~~~~~tiiivtH~ 195 (214)
T cd03292 136 ELSGGEQQRVAIARAIVN-SPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVATHA 195 (214)
T ss_pred hcCHHHHHHHHHHHHHHc-CCCEEEEeCCCCcCCHHHHHHHHHHHHH-HHHcCCEEEEEeCC
Confidence 343444445888999998 799999966544444 22334455544 33345667777643
No 280
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=22.70 E-value=2.3e+02 Score=22.26 Aligned_cols=22 Identities=18% Similarity=0.561 Sum_probs=16.4
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCC
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDG 91 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdg 91 (381)
.+.+++..+++++| ||++|-.+
T Consensus 91 ~~~i~~~~~~~~~d-liv~G~~~ 112 (140)
T PF00582_consen 91 ADAIIEFAEEHNAD-LIVMGSRG 112 (140)
T ss_dssp HHHHHHHHHHTTCS-EEEEESSS
T ss_pred chhhhhccccccce-eEEEeccC
Confidence 56777888888888 66677666
No 281
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=22.70 E-value=2.4e+02 Score=24.27 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=55.9
Q ss_pred EEEEEcCCC--cHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCC-hHHHHHHHHHHHHHHHHhhhhcCcceEE
Q 016855 83 QVYIIGGDG--TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG-FDTAVEEAQRAINAAHVEVESVENGVGI 159 (381)
Q Consensus 83 ~LvvIGGdg--S~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiG-FdTA~~~~~~ai~~l~~tA~S~~~rv~i 159 (381)
.++.+-=|- +-..|..|.+++.++|..+.+..+++ +...| .+ |..++...++.+.+.-..+......++|
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~g~~v~~~~i~~-----l~~~~--~~~F~~Gl~~Lv~~~~~~v~~~~~~~~~v~~ 96 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEKGINVEVVEIEG-----LQTED--PEKFREGLRNLVRWVAEEVKNYKGRGYEVIF 96 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEE--------E------HHHHHHHHHHHHHHTHHHHHHHHHTT-EEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeee-----ecccc--hHHHHHHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence 455554432 24457778888888888777776665 33333 33 8899998888888766555444345666
Q ss_pred EEecCCCc--cHHHHHHhhhcCCccEEEcCCC
Q 016855 160 VKLMGRYS--GFISMYATLASRDVDCCLIPES 189 (381)
Q Consensus 160 VEvMGR~a--G~LAl~aaLA~~~ad~iliPE~ 189 (381)
.=|=|=.+ +++.+.+.+ . +..++|+=|.
T Consensus 97 n~TGGfK~~~~~~~~~g~~-~-~~~v~Yi~E~ 126 (136)
T PF09651_consen 97 NATGGFKAEIAYLTLLGML-Y-GDPVYYIFEE 126 (136)
T ss_dssp E-SSS-HHHHHHHHHHHHH-T---EEEEEETT
T ss_pred EeCCChHHHHHHHHHHHHH-c-CCCEEEEEcC
Confidence 66555444 566555555 3 5778888875
No 282
>PRK10908 cell division protein FtsE; Provisional
Probab=22.66 E-value=1.5e+02 Score=27.13 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=34.4
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEec
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAE 219 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsE 219 (381)
+.-|..-=.++++.||+. .|+++++=|---.+|. ...+.+.+++ +.+++..+|+++-
T Consensus 137 ~LS~G~~qrv~laral~~-~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~~tiii~sH 195 (222)
T PRK10908 137 QLSGGEQQRVGIARAVVN-KPAVLLADEPTGNLDDALSEGILRLFEE-FNRVGVTVLMATH 195 (222)
T ss_pred hCCHHHHHHHHHHHHHHc-CCCEEEEeCCCCcCCHHHHHHHHHHHHH-HHHCCCEEEEEeC
Confidence 343333445888999998 7999999776545542 2234444443 3334556777764
No 283
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=22.60 E-value=1.3e+02 Score=28.97 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=37.6
Q ss_pred cceEEEEecCCCccHHHHHHhhhcCCc---cEEEcCCCCCCCCChhhHHHHHHHHHHhC--CceEEEEec
Q 016855 155 NGVGIVKLMGRYSGFISMYATLASRDV---DCCLIPESPFYLEGPGGLFEFIERQLKEN--GHMVIVVAE 219 (381)
Q Consensus 155 ~rv~iVEvMGR~aG~LAl~aaLA~~~a---d~iliPE~~~~~~~~~~~~~~I~~~~~~~--~~~iIvVsE 219 (381)
+.+.++|+ +.||+..++++-.-.+ .++|+||.|. .-.+.|++++++. ...=|||+-
T Consensus 90 ~~~~i~~~---~~G~v~anAGID~SNv~~g~~~LLP~DPd------~SA~~ir~~l~~~~g~~v~VIItD 150 (245)
T PRK13293 90 APFILTET---KHGHVCANAGIDESNVPDGDLLLLPENPD------ESAERIREGLEELTGKKVGVIITD 150 (245)
T ss_pred CCeEEEEe---ccceEEeccccccccCCCCeEEecCCCHH------HHHHHHHHHHHHHHCCCEEEEEEc
Confidence 34778887 8999988888753222 3889999983 4567777777663 334445554
No 284
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=22.58 E-value=1.2e+02 Score=20.93 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=24.8
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHH
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKG 95 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~ 95 (381)
....++++.+++++++++.++..+|.+.|
T Consensus 16 ~~l~~~~~~~~~~~~~~~~V~d~~~~~~G 44 (57)
T PF00571_consen 16 DSLEEALEIMRKNGISRLPVVDEDGKLVG 44 (57)
T ss_dssp SBHHHHHHHHHHHTSSEEEEESTTSBEEE
T ss_pred CcHHHHHHHHHHcCCcEEEEEecCCEEEE
Confidence 35789999999999999999988887644
No 285
>PRK14812 hypothetical protein; Provisional
Probab=22.14 E-value=1.4e+02 Score=25.51 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=27.0
Q ss_pred ccccCCCCchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCC
Q 016855 60 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL 108 (381)
Q Consensus 60 LGtsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~ 108 (381)
-|||| +.++-.|+.+||.++|.= .-|..+...+.+.|+
T Consensus 2 cGSSR-----EhA~wAL~~~Gi~aVIA~------SFa~IF~~N~~nnGl 39 (119)
T PRK14812 2 AGSSR-----EHAAWALADYGFKVVIAG------SFGDIHYNNELNNGM 39 (119)
T ss_pred CCCcH-----HHHHHHHHHcCCCEEEEc------hHHHHHHhHHHHCCC
Confidence 46776 788899999999998742 345556666656565
No 286
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=21.95 E-value=1.5e+02 Score=28.63 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=15.1
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCc
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGT 92 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS 92 (381)
.+..+..+...||+.+++++||-+
T Consensus 75 l~~~L~~~~~~Gi~nvL~l~GD~~ 98 (272)
T TIGR00676 75 IREILREYRELGIRHILALRGDPP 98 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCC
Confidence 445555666666666666666654
No 287
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.94 E-value=1.2e+02 Score=23.04 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHH
Q 016855 91 GTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 134 (381)
Q Consensus 91 gS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdT 134 (381)
.|-..|.++-+.++++|++..++-+|..|..+- ..++-|+.
T Consensus 9 ~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~C---G~al~~~~ 49 (73)
T PF11823_consen 9 PSTHDAMKAEKLLKKNGIPVRLIPTPREISAGC---GLALRFEP 49 (73)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEeCCChhccCCC---CEEEEECh
Confidence 456667777778888999999999999997663 23555543
No 288
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.86 E-value=2.3e+02 Score=25.57 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=37.1
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
-+.-|..-=.++++.||+. .|+++++=|-.-.+|. ...+.+.+++..++.+..+|+++--
T Consensus 127 ~~LS~G~~qrv~ia~al~~-~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 188 (211)
T cd03298 127 GELSGGERQRVALARVLVR-DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188 (211)
T ss_pred ccCCHHHHHHHHHHHHHhc-CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 3554555556888999998 7999999776554542 2334455544333346677777643
No 289
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=21.80 E-value=1.4e+02 Score=29.47 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=39.2
Q ss_pred EEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecCC
Q 016855 159 IVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEGA 221 (381)
Q Consensus 159 iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG~ 221 (381)
+-+.-|..-=-+|++.||+. .|+++++=|---.+|. ...+.+.+++..++.+..+|+++--.
T Consensus 98 ~~~LSgGq~qRvalaraL~~-~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~ 161 (325)
T TIGR01187 98 PHQLSGGQQQRVALARALVF-KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ 161 (325)
T ss_pred hhhCCHHHHHHHHHHHHHHh-CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34455555566889999999 7999999775444442 22344555544444466788887543
No 290
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=21.79 E-value=1.8e+02 Score=29.77 Aligned_cols=61 Identities=20% Similarity=0.366 Sum_probs=42.8
Q ss_pred hcCCccccccCC--CCchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccc
Q 016855 54 KRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 118 (381)
Q Consensus 54 ~~GGt~LGtsR~--~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkT 118 (381)
..+|.++-|+-. .+.++.+....+++++|.++|+|-. +-=..|.+.+... -.++|+.+||+
T Consensus 211 r~sG~iInT~g~i~~egy~~llhai~~f~v~vviVLg~E---rLy~~lkk~~~~~-~~v~vv~lpKs 273 (415)
T KOG2749|consen 211 RVSGCIINTCGWIEGEGYAALLHAIKAFEVDVVIVLGQE---RLYSSLKKDLPPK-KNVRVVKLPKS 273 (415)
T ss_pred cccceEEeccceeccccHHHHHHHHHHcCccEEEEeccH---HHHHHHHhhcccc-ccceEEEecCC
Confidence 457788887764 4679999999999999999999876 2222333333211 24789999994
No 291
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.77 E-value=3.9e+02 Score=24.48 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=30.5
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccc
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 120 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTID 120 (381)
..++++.+...++|++++.+++.... .+.+.+.++++ +||.+-...+
T Consensus 44 ~~~~i~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~i--pvV~i~~~~~ 90 (269)
T cd06281 44 ELEILRSFEQRRMDGIIIAPGDERDP---ELVDALASLDL--PIVLLDRDMG 90 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCcH---HHHHHHHhCCC--CEEEEecccC
Confidence 55778899999999999998864422 22344445564 4665544333
No 292
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=21.59 E-value=2.3e+02 Score=28.08 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=31.7
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCC
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ 109 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~ 109 (381)
.+++.+.|++++ +..+++.++.+...+.++.+.+++.+.+
T Consensus 41 ~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~d 80 (339)
T cd08173 41 GKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSARDIGAD 80 (339)
T ss_pred HHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhhcCCC
Confidence 567788888888 7766778899999999998887765544
No 293
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.33 E-value=2.4e+02 Score=27.40 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=37.0
Q ss_pred hhcCCccccccCCC---CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEee
Q 016855 53 HKRGGTILRTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 114 (381)
Q Consensus 53 ~~~GGt~LGtsR~~---~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIg 114 (381)
...|+++..+.+++ .|+...+..+++.+-|.+++.+.... +..+.+.+++.|+++++++
T Consensus 163 ~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~~---~~~~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 163 AARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGPE---GAQIANGMAKLGWKVPIIS 224 (347)
T ss_pred HHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecChH---HHHHHHHHHHcCCCCcEec
Confidence 34566666555542 46778888888889988888764332 2235566666777655543
No 294
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=21.29 E-value=1.7e+02 Score=26.91 Aligned_cols=51 Identities=14% Similarity=0.045 Sum_probs=32.8
Q ss_pred cHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 168 GFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 168 G~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
=-++++.+|+. .|+++++=|---.+|. ...+.+.+++ +.+.+..+|+++--
T Consensus 151 qrl~la~al~~-~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~~tvi~vsH~ 203 (243)
T TIGR01978 151 KRNEILQMALL-EPKLAILDEIDSGLDIDALKIVAEGINR-LREPDRSFLIITHY 203 (243)
T ss_pred HHHHHHHHHhc-CCCEEEecCCcccCCHHHHHHHHHHHHH-HHHCCcEEEEEEec
Confidence 34889999998 7999999776544442 2334454443 33345677777754
No 295
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=21.27 E-value=3.9e+02 Score=21.33 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=34.3
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 117 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPk 117 (381)
+..+..+.+++ |.-.+++|.+|=+-.-...|-+.+.++++ +++-+|.
T Consensus 17 G~kqt~Kai~k-g~~~~v~iA~Da~~~vv~~l~~lceek~I--p~v~V~s 63 (84)
T PRK13600 17 GLKETLKALKK-DQVTSLIIAEDVEVYLMTRVLSQINQKNI--PVSFFKS 63 (84)
T ss_pred eHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHHcCC--CEEEECC
Confidence 46677777776 45558888888887776777777777775 4788875
No 296
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=21.22 E-value=2.9e+02 Score=26.73 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=40.3
Q ss_pred cCCccccccCCC----CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEee
Q 016855 55 RGGTILRTSRGG----HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 114 (381)
Q Consensus 55 ~GGt~LGtsR~~----~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIg 114 (381)
.|+++.+..+++ .|+...+..+++.+.|++++.+... .+..+.+.+++.|++.++++
T Consensus 172 ~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 232 (342)
T cd06329 172 PDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGN---DLLLLVKQAADAGLKLPFYT 232 (342)
T ss_pred CCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCc---hHHHHHHHHHHcCCCceEEe
Confidence 778888776543 4677888899999999988877443 23356667777787765554
No 297
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.15 E-value=1.9e+02 Score=27.69 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=36.7
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+.-|..-=-++++.||+. .|+++++=|-...+|. ...+.+.+++..++.+..||+++--
T Consensus 143 ~LS~G~~qrv~laral~~-~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 143 NLSGGQKQRVAIAGILAV-EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred cCCHHHHHHHHHHHHHHc-CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 444444446888999999 7999999876555552 2234454543323336677777744
No 298
>PLN02591 tryptophan synthase
Probab=21.13 E-value=2.5e+02 Score=26.96 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=39.4
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee-ccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKT 118 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI-PkT 118 (381)
..++.++.+++.|+|+|++- |=.+.-+..+.+.++++|++. |..| |.|
T Consensus 94 G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~-I~lv~Ptt 142 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIEL-VLLTTPTT 142 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeE-EEEeCCCC
Confidence 57889999999999999998 778888888888888999863 5556 444
No 299
>PRK14053 methyltransferase; Provisional
Probab=21.01 E-value=1.6e+02 Score=27.18 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=34.1
Q ss_pred CCccccccCCC-CchHHHHHHHH-HcCCcEEEEEcCCC-cHHHHHHHHHHHHHcCC
Q 016855 56 GGTILRTSRGG-HDTNKIVDNIE-DRGINQVYIIGGDG-TQKGAALIYKEVEKRGL 108 (381)
Q Consensus 56 GGt~LGtsR~~-~~~~~i~~~l~-~~~Id~LvvIGGdg-S~~~a~~L~~~~~~~g~ 108 (381)
|-.+.||+.+. ...++++.|+- .-+|..|++.|-+= -..+.+.| ..+.++|+
T Consensus 38 gaAI~G~c~TENlGIEKvI~NvisNpNIRflilcG~Ev~GHltGqsL-~aL~~NGi 92 (194)
T PRK14053 38 EAAIWGSSKTENLGVEKIIVNVISNSNIRYVLLCGGESRGHLAGHSL-LAIHANGI 92 (194)
T ss_pred CceEEeeccccccCHHHHHHHhhcCCCceEEEEecCccCCccccHHH-HHHHHcCC
Confidence 45688988874 47999988875 45999888888664 23333434 23345565
No 300
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=20.99 E-value=2.3e+02 Score=26.87 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=36.6
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
-+.-|..-=-++++.+|+. .|+++++=|---.+|. ...+.+.+++..++.+..+|+++--
T Consensus 142 ~~LSgGq~qrv~laral~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 203 (269)
T PRK11831 142 SELSGGMARRAALARAIAL-EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203 (269)
T ss_pred hhCCHHHHHHHHHHHHHhc-CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 3444444445888999998 7999999776545542 2234455544333336677777743
No 301
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=20.86 E-value=2.5e+02 Score=24.74 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=36.5
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhC-CceEEEEecC
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKEN-GHMVIVVAEG 220 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~-~~~iIvVsEG 220 (381)
-+.-|...=-+++..+++. .|+++++=|-.-.+|. ...+.+.+++ ++++ +..+|+++.-
T Consensus 96 ~~LS~G~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~-~~~~~~~tiii~sh~ 157 (180)
T cd03214 96 NELSGGERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRR-LARERGKTVVMVLHD 157 (180)
T ss_pred ccCCHHHHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHH-HHHhcCCEEEEEeCC
Confidence 3444555556889999998 7999999776545542 2234444443 3333 5567777754
No 302
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=20.83 E-value=47 Score=29.64 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=14.2
Q ss_pred cCc--cCCC-CCCChHHHHHHHH
Q 016855 121 NDI--AVID-KSFGFDTAVEEAQ 140 (381)
Q Consensus 121 NDi--~~tD-~tiGFdTA~~~~~ 140 (381)
||+ ..-| ||+||||-++.=-
T Consensus 102 ndL~fWleDiYTPGyDsLLKkKE 124 (159)
T PF06789_consen 102 NDLEFWLEDIYTPGYDSLLKKKE 124 (159)
T ss_pred ccchHHHhcccCCchHHHHHHHH
Confidence 676 2334 8999999887643
No 303
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=20.75 E-value=4.7e+02 Score=23.99 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=45.2
Q ss_pred EEEEEccchhhhhcCCe---------EeCChhhHhchhhcCCccccccCCC--CchHHHHHHHHHcCCcEEEEEcCCCc
Q 016855 25 SLIEFQGGYRGFYSKNT---------LTLSPKVVNDIHKRGGTILRTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGT 92 (381)
Q Consensus 25 ~V~G~~~G~~GL~~~~~---------~~L~~~~v~~i~~~GGt~LGtsR~~--~~~~~i~~~l~~~~Id~LvvIGGdgS 92 (381)
.++++-.|..=+++..+ =.++.+..+.+...+=.++--...+ -|.+++++.+.+++.+-++++|+-|.
T Consensus 20 ~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~~~eKD~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 98 (203)
T TIGR01378 20 LVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKKAGVKIIVFPPEKDTTDLELALKYALERGADEITILGATGG 98 (203)
T ss_pred EEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHHcCCceEEcCCCCCCCHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 68899999988876532 2344444444443332233322222 37999999999999999999999886
No 304
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=20.72 E-value=2.7e+02 Score=26.01 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=29.4
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHH-HHHHHHHHHcCCCceEe
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGA-ALIYKEVEKRGLQVAVA 113 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~~~~~g~~i~vI 113 (381)
...+++.|.++|+..+|+|-|-|....+ ...++++.++..++.+.
T Consensus 88 l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~l~~~~~~~~v~ 133 (237)
T PF02633_consen 88 LRDILRSLARHGFRRIVIVNGHGGNIAALEAAARELRQEYPGVKVF 133 (237)
T ss_dssp HHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHHHHHHGCC-EEE
T ss_pred HHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHHHHhhCCCcEEE
Confidence 5788999999999999999999876644 34455555442333343
No 305
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=20.68 E-value=4e+02 Score=23.24 Aligned_cols=47 Identities=30% Similarity=0.396 Sum_probs=28.5
Q ss_pred EEEEcCCCcHHHH--HHHHHHHHHcCCCceEeeeccccccCccCCC-CCCChHHHH
Q 016855 84 VYIIGGDGTQKGA--ALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAV 136 (381)
Q Consensus 84 LvvIGGdgS~~~a--~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD-~tiGFdTA~ 136 (381)
+.++|-.||=++. .+|.+.++++|+++. +|.+|....+ ...|.||..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~------viK~~~~~~~~d~~~~D~~~ 51 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVA------TIKHDHHDFDIDKNGKDSYR 51 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEE------EEecccccccCCCccccHHH
Confidence 4567877776664 677788877787633 3445544333 134666654
No 306
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=20.60 E-value=83 Score=31.67 Aligned_cols=87 Identities=20% Similarity=0.327 Sum_probs=46.6
Q ss_pred cccCCCCCcHHHH--HhhhcC--CEEEE---EccchhhhhcCCeEeCChhhHhchhhcCC---------ccccccCCCCc
Q 016855 5 SSVICFCYSLPLF--VKHLHH--NSLIE---FQGGYRGFYSKNTLTLSPKVVNDIHKRGG---------TILRTSRGGHD 68 (381)
Q Consensus 5 ~~~~~~~pg~~~v--i~gl~~--~~V~G---~~~G~~GL~~~~~~~L~~~~v~~i~~~GG---------t~LGtsR~~~~ 68 (381)
+++|+..|++..+ ++.|-+ .+.+| ++-|| |+.-++.-.++-.+=+...+.|| -.|.|.-+..+
T Consensus 57 ~~iGgflp~~kQI~nVasLPGivg~sIGLPDiHsGY-GF~IGn~AAFD~nnPesVvSPGGVGfDINCGVRlLRTNL~e~~ 135 (505)
T KOG3833|consen 57 GGIGGFLPAVKQIANVASLPGIVGRSIGLPDIHSGY-GFAIGNMAAFDMNNPESVVSPGGVGFDINCGVRLLRTNLDEGD 135 (505)
T ss_pred CccccccHHHHHHhhhhccCcccccccCCCcccccc-CccccceeeeccCCccceecCCccceecccchhhhhhcccccc
Confidence 6899999999977 555555 45566 45555 44445544333333333444444 46666555555
Q ss_pred hHHHHHHHHHcCCcEE-EEEcCCCc
Q 016855 69 TNKIVDNIEDRGINQV-YIIGGDGT 92 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~L-vvIGGdgS 92 (381)
.+-..+.|.+.=+|.+ +-+|-+|-
T Consensus 136 v~p~keqLaq~lFdhIPvGvGS~g~ 160 (505)
T KOG3833|consen 136 VQPVKEQLAQSLFDHIPVGVGSKGR 160 (505)
T ss_pred cchHHHHHHHHHHhhCCcccCcCCc
Confidence 5444455544433332 22344444
No 307
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=20.60 E-value=2.8e+02 Score=26.44 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=39.6
Q ss_pred hhhcCCccccccCCC---CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEee
Q 016855 52 IHKRGGTILRTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 114 (381)
Q Consensus 52 i~~~GGt~LGtsR~~---~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIg 114 (381)
+...|+++.+..+++ .|+...+..+++.+.|++++.+... .+..+.+.+.+.|++.++++
T Consensus 161 ~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 223 (312)
T cd06346 161 FEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPE---TGSGILRSAYEQGLFDKFLL 223 (312)
T ss_pred HHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccc---hHHHHHHHHHHcCCCCceEe
Confidence 445677877766553 4788899999999999988775433 22334455566676555443
No 308
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=20.55 E-value=2.3e+02 Score=26.37 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=36.9
Q ss_pred EecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 161 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 161 EvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
+.-|...=-++++.||+. .|+++++=|-.-.+|. ...+.+.+++..++.+..+|+++--
T Consensus 146 ~LS~G~~qrv~laral~~-~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 206 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAM-RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE 206 (252)
T ss_pred hcCHHHHHHHHHHHHHHc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 444444445889999998 7999998776544442 2334455554433346677777754
No 309
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=20.45 E-value=2.5e+02 Score=24.57 Aligned_cols=42 Identities=17% Similarity=0.345 Sum_probs=28.3
Q ss_pred chHHHHHHHHHc--CCcEEEEEcCCCcHHH-HHHHHHHHHHcCCCc
Q 016855 68 DTNKIVDNIEDR--GINQVYIIGGDGTQKG-AALIYKEVEKRGLQV 110 (381)
Q Consensus 68 ~~~~i~~~l~~~--~Id~LvvIGGdgS~~~-a~~L~~~~~~~g~~i 110 (381)
+.+++.+.+++. .++++.+-||+ -+.. ...|.+.+++.|+++
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i 91 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKT 91 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCE
Confidence 356666666665 57899999999 4422 456667777767653
No 310
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=20.35 E-value=1.7e+02 Score=23.57 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=28.9
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 117 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPk 117 (381)
|+..+....-..++.++|+-||..--.....++++ ++ ++|+..|.
T Consensus 49 dR~di~~~a~~~~i~~iIltg~~~~~~~v~~la~~---~~--i~vi~t~~ 93 (105)
T PF07085_consen 49 DREDIQLAAIEAGIACIILTGGLEPSEEVLELAKE---LG--IPVISTPY 93 (105)
T ss_dssp T-HHHHHHHCCTTECEEEEETT----HHHHHHHHH---HT---EEEE-SS
T ss_pred CcHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHH---CC--CEEEEECC
Confidence 35677777778889999999988877777666664 35 67888874
No 311
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=20.20 E-value=75 Score=29.57 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcHHHHH
Q 016855 70 NKIVDNIEDRGINQVYIIGGDGTQKGAA 97 (381)
Q Consensus 70 ~~i~~~l~~~~Id~LvvIGGdgS~~~a~ 97 (381)
...++.|+++||| ++.||+-|+.-|.
T Consensus 9 p~~~~vf~~~gid--~cc~g~~~l~~a~ 34 (216)
T TIGR03652 9 PRAARIFRKYGID--FCCGGNVSLAEAC 34 (216)
T ss_pred ccHHHHHHHcCCC--ccCCCcchHHHHH
Confidence 4567899999999 8999988877653
No 312
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=20.10 E-value=1.9e+02 Score=26.11 Aligned_cols=58 Identities=26% Similarity=0.380 Sum_probs=35.0
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEec
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAE 219 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsE 219 (381)
-+.-|...=-++++.||+. .|+++++=|---.+|. ...+.+.+++. .+++..+|+++-
T Consensus 133 ~~LSgG~~qrv~laral~~-~p~llllDEPt~~LD~~~~~~~~~~l~~~-~~~~~tvi~~sH 192 (211)
T cd03225 133 FTLSGGQKQRVAIAGVLAM-DPDILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVTH 192 (211)
T ss_pred ccCCHHHHHHHHHHHHHhc-CCCEEEEcCCcccCCHHHHHHHHHHHHHH-HHcCCEEEEEeC
Confidence 3444444456888889998 7999998776444442 22344544433 334566777764
No 313
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.10 E-value=1.8e+02 Score=26.01 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=36.4
Q ss_pred EEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCceEEEEecC
Q 016855 160 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 160 VEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~--~~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
-+.-|...=.+++..|++. +|+++++=|-.-.+| ....+.+.+++ ..+++..+|+++--
T Consensus 122 ~~LS~G~~~rl~la~al~~-~p~~lllDEP~~~LD~~~~~~l~~~l~~-~~~~~~tiii~sh~ 182 (195)
T PRK13541 122 YSLSSGMQKIVAIARLIAC-QSDLWLLDEVETNLSKENRDLLNNLIVM-KANSGGIVLLSSHL 182 (195)
T ss_pred hhCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHH-HHhCCCEEEEEeCC
Confidence 3455555567889999999 799999977644444 22234444433 22345667776644
No 314
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=20.05 E-value=2.1e+02 Score=25.68 Aligned_cols=58 Identities=24% Similarity=0.206 Sum_probs=33.0
Q ss_pred ecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 162 LMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 162 vMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
.-|..-=-++++.||+. .|+++++=|-.-.+|. ...+.+.+.+.+.+++..+|+++--
T Consensus 128 lS~G~~qrv~laral~~-~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~ 187 (204)
T cd03250 128 LSGGQKQRISLARAVYS-DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187 (204)
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCC
Confidence 33333345788889998 7999999886555552 1123332222222235567766643
Done!