Query 016855
Match_columns 381
No_of_seqs 165 out of 1318
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 04:54:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hig_A 6-phospho-1-fructokinas 100.0 4.7E-92 1.6E-96 718.5 30.8 363 4-378 102-478 (487)
2 1zxx_A 6-phosphofructokinase; 100.0 1.7E-87 5.9E-92 656.2 30.3 296 4-340 6-313 (319)
3 1pfk_A Phosphofructokinase; tr 100.0 2.3E-87 7.9E-92 655.5 30.4 298 4-342 7-317 (320)
4 3hno_A Pyrophosphate-dependent 100.0 8.9E-87 3.1E-91 672.3 29.0 332 3-345 7-387 (419)
5 4a3s_A 6-phosphofructokinase; 100.0 2E-85 6.7E-90 643.1 29.1 300 4-344 6-317 (319)
6 3o8l_A 6-phosphofructokinase, 100.0 2.5E-82 8.7E-87 675.8 23.5 336 4-365 20-391 (762)
7 2f48_A Diphosphate--fructose-6 100.0 2.8E-81 9.5E-86 650.3 26.9 339 4-343 77-514 (555)
8 3o8o_B 6-phosphofructokinase s 100.0 7.6E-80 2.6E-84 657.0 30.9 337 4-366 8-382 (766)
9 3o8o_A 6-phosphofructokinase s 100.0 1.1E-79 3.8E-84 655.7 27.1 336 4-366 10-382 (787)
10 3opy_B 6-phosphofructo-1-kinas 100.0 3.4E-79 1.2E-83 658.8 26.9 337 4-366 186-560 (941)
11 3opy_A 6-phosphofructo-1-kinas 100.0 9.8E-79 3.4E-83 653.6 27.2 336 4-366 215-587 (989)
12 3o8l_A 6-phosphofructokinase, 100.0 1.1E-78 3.7E-83 647.9 26.3 316 4-345 405-747 (762)
13 3o8o_B 6-phosphofructokinase s 100.0 6.9E-77 2.4E-81 634.3 26.6 313 4-345 398-754 (766)
14 3o8o_A 6-phosphofructokinase s 100.0 1.1E-76 3.6E-81 632.8 27.1 314 4-346 398-765 (787)
15 3opy_B 6-phosphofructo-1-kinas 100.0 2.2E-76 7.4E-81 637.0 26.8 313 4-345 576-930 (941)
16 3opy_A 6-phosphofructo-1-kinas 100.0 7.5E-75 2.6E-79 623.5 25.9 314 4-346 603-976 (989)
17 2i2c_A Probable inorganic poly 93.9 0.025 8.6E-07 53.2 2.7 46 69-117 17-69 (272)
18 1z0s_A Probable inorganic poly 92.8 0.031 1.1E-06 53.1 1.4 66 69-150 42-124 (278)
19 2an1_A Putative kinase; struct 92.3 0.042 1.4E-06 51.9 1.5 34 78-116 61-94 (292)
20 3g1w_A Sugar ABC transporter; 87.6 4.4 0.00015 36.9 11.1 129 68-210 49-185 (305)
21 1yt5_A Inorganic polyphosphate 86.7 0.14 4.9E-06 47.6 0.4 32 79-116 40-71 (258)
22 3kjx_A Transcriptional regulat 85.1 7.8 0.00027 36.2 11.7 41 69-115 113-153 (344)
23 2qv7_A Diacylglycerol kinase D 82.9 0.83 2.8E-05 43.8 3.8 55 68-125 68-122 (337)
24 2bon_A Lipid kinase; DAG kinas 82.0 1.3 4.5E-05 42.4 4.9 54 68-124 70-125 (332)
25 1u0t_A Inorganic polyphosphate 80.9 0.72 2.5E-05 43.9 2.5 34 78-116 73-106 (307)
26 1jq5_A Glycerol dehydrogenase; 80.4 2.4 8.1E-05 41.2 6.1 59 67-135 73-131 (370)
27 3k9c_A Transcriptional regulat 79.9 18 0.0006 32.7 11.7 80 68-162 54-134 (289)
28 3pfn_A NAD kinase; structural 79.7 0.92 3.2E-05 44.6 2.9 55 79-148 107-163 (365)
29 3egc_A Putative ribose operon 78.8 4.3 0.00015 36.7 7.0 79 69-161 53-132 (291)
30 3h5o_A Transcriptional regulat 77.8 29 0.001 32.0 12.8 79 69-161 107-185 (339)
31 3qk7_A Transcriptional regulat 77.7 11 0.00038 34.2 9.6 83 66-162 51-134 (294)
32 3uhj_A Probable glycerol dehyd 77.2 2.8 9.5E-05 41.3 5.5 57 67-133 93-149 (387)
33 3bil_A Probable LACI-family tr 76.3 50 0.0017 30.7 14.2 77 69-161 111-191 (348)
34 3dbi_A Sugar-binding transcrip 75.8 13 0.00046 34.4 9.7 79 69-160 108-187 (338)
35 3afo_A NADH kinase POS5; alpha 75.7 0.72 2.5E-05 45.7 0.8 54 79-147 113-169 (388)
36 3k4h_A Putative transcriptiona 73.2 10 0.00035 34.1 7.9 77 69-161 58-138 (292)
37 3gbv_A Putative LACI-family tr 72.6 23 0.00078 31.7 10.2 126 69-210 58-198 (304)
38 3o74_A Fructose transport syst 71.4 39 0.0013 29.6 11.4 81 69-162 47-128 (272)
39 3iv7_A Alcohol dehydrogenase I 69.2 4.8 0.00016 39.3 5.0 49 68-122 76-124 (364)
40 3hl0_A Maleylacetate reductase 67.7 6.4 0.00022 38.1 5.5 49 68-122 75-123 (353)
41 3jzd_A Iron-containing alcohol 67.3 5.3 0.00018 38.8 4.8 47 68-119 77-123 (358)
42 3l49_A ABC sugar (ribose) tran 66.4 19 0.00064 32.2 8.2 83 68-160 49-131 (291)
43 3ox4_A Alcohol dehydrogenase 2 63.8 7.3 0.00025 38.0 5.1 56 68-123 76-144 (383)
44 3gv0_A Transcriptional regulat 63.6 32 0.0011 30.8 9.2 79 68-160 54-133 (288)
45 3kke_A LACI family transcripti 63.0 18 0.0006 32.9 7.4 80 68-161 59-138 (303)
46 1oj7_A Hypothetical oxidoreduc 62.9 5.1 0.00018 39.4 3.8 52 68-119 94-161 (408)
47 1rrm_A Lactaldehyde reductase; 61.8 8.4 0.00029 37.4 5.1 53 68-120 76-143 (386)
48 3e3m_A Transcriptional regulat 60.3 33 0.0011 32.0 8.9 80 69-162 115-195 (355)
49 2gru_A 2-deoxy-scyllo-inosose 59.5 7.5 0.00026 37.7 4.3 64 68-137 79-145 (368)
50 3okf_A 3-dehydroquinate syntha 58.6 6.8 0.00023 38.7 3.8 62 68-135 108-172 (390)
51 1o2d_A Alcohol dehydrogenase, 57.6 5.7 0.0002 38.6 3.1 56 68-123 86-154 (371)
52 3bfj_A 1,3-propanediol oxidore 57.0 11 0.00037 36.7 4.9 52 68-119 80-144 (387)
53 3e61_A Putative transcriptiona 56.1 42 0.0014 29.6 8.5 76 69-161 53-129 (277)
54 3s40_A Diacylglycerol kinase; 55.7 7.3 0.00025 36.6 3.4 54 67-124 51-104 (304)
55 3rf7_A Iron-containing alcohol 55.0 11 0.00038 36.8 4.7 53 68-120 94-162 (375)
56 3d8u_A PURR transcriptional re 54.4 1E+02 0.0035 26.9 10.8 79 69-161 48-127 (275)
57 1ujn_A Dehydroquinate synthase 53.8 11 0.00037 36.4 4.3 49 68-119 69-120 (348)
58 1kq3_A Glycerol dehydrogenase; 53.2 6.1 0.00021 38.4 2.4 56 68-134 83-138 (376)
59 1vlj_A NADH-dependent butanol 52.8 9.8 0.00034 37.4 3.9 53 68-120 89-154 (407)
60 3hcw_A Maltose operon transcri 51.0 35 0.0012 30.7 7.2 78 69-162 57-139 (295)
61 1ta9_A Glycerol dehydrogenase; 50.9 7.2 0.00025 39.1 2.6 59 68-137 134-192 (450)
62 3clh_A 3-dehydroquinate syntha 50.2 19 0.00064 34.5 5.3 49 68-119 70-121 (343)
63 1xah_A Sadhqs, 3-dehydroquinat 50.0 17 0.00058 34.9 5.0 49 68-119 75-126 (354)
64 3gyb_A Transcriptional regulat 49.9 1.1E+02 0.0038 26.8 10.3 90 65-172 45-141 (280)
65 3h75_A Periplasmic sugar-bindi 43.6 1.5E+02 0.0051 27.1 10.5 47 70-125 50-98 (350)
66 1x60_A Sporulation-specific N- 42.9 35 0.0012 24.9 4.8 50 60-109 14-72 (79)
67 1uta_A FTSN, MSGA, cell divisi 42.5 29 0.001 25.7 4.3 50 60-109 14-72 (81)
68 1sg6_A Pentafunctional AROM po 42.5 19 0.00066 35.1 4.1 61 68-134 88-153 (393)
69 3dnf_A ISPH, LYTB, 4-hydroxy-3 42.2 36 0.0012 32.3 5.8 53 68-122 198-250 (297)
70 3ce9_A Glycerol dehydrogenase; 41.0 12 0.00041 35.8 2.3 51 68-124 77-127 (354)
71 2qip_A Protein of unknown func 40.9 45 0.0015 28.2 5.8 49 68-119 95-145 (165)
72 2rgy_A Transcriptional regulat 40.8 1.5E+02 0.0051 26.2 9.8 74 72-161 59-135 (290)
73 3trh_A Phosphoribosylaminoimid 40.5 49 0.0017 28.8 5.9 49 63-118 44-93 (169)
74 3jy6_A Transcriptional regulat 40.4 1.9E+02 0.0064 25.3 15.7 79 69-164 52-133 (276)
75 3tb6_A Arabinose metabolism tr 40.3 70 0.0024 28.3 7.4 84 69-162 60-145 (298)
76 3ors_A N5-carboxyaminoimidazol 40.1 58 0.002 28.2 6.3 85 64-174 42-132 (163)
77 3qbe_A 3-dehydroquinate syntha 37.3 28 0.00097 33.9 4.4 49 68-119 88-139 (368)
78 3szu_A ISPH, 4-hydroxy-3-methy 37.0 34 0.0012 32.9 4.7 40 68-109 214-253 (328)
79 3lp6_A Phosphoribosylaminoimid 35.9 60 0.002 28.4 5.7 50 63-119 45-95 (174)
80 4b4k_A N5-carboxyaminoimidazol 35.7 39 0.0013 29.8 4.5 10 108-117 99-108 (181)
81 1iv0_A Hypothetical protein; r 34.5 32 0.0011 26.9 3.5 29 95-123 39-67 (98)
82 2vk2_A YTFQ, ABC transporter p 34.3 96 0.0033 27.8 7.3 42 69-115 47-89 (306)
83 3m9w_A D-xylose-binding peripl 33.9 1.5E+02 0.0051 26.5 8.6 127 69-210 47-185 (313)
84 2g0t_A Conserved hypothetical 33.1 3.3E+02 0.011 26.1 11.2 103 80-186 168-279 (350)
85 3nav_A Tryptophan synthase alp 32.0 2.1E+02 0.0072 26.4 9.3 134 69-218 7-158 (271)
86 3huu_A Transcription regulator 31.9 1.2E+02 0.0042 27.1 7.6 78 69-162 72-152 (305)
87 3vnd_A TSA, tryptophan synthas 31.3 1.8E+02 0.0061 26.8 8.6 136 69-220 5-158 (267)
88 3kuu_A Phosphoribosylaminoimid 31.1 52 0.0018 28.8 4.5 48 64-118 51-99 (174)
89 2dri_A D-ribose-binding protei 30.9 1.1E+02 0.0038 26.8 7.0 82 70-161 47-130 (271)
90 3brq_A HTH-type transcriptiona 30.9 2E+02 0.0069 25.1 8.8 80 69-161 66-146 (296)
91 4grd_A N5-CAIR mutase, phospho 30.9 41 0.0014 29.4 3.8 48 64-118 51-99 (173)
92 3lkb_A Probable branched-chain 30.9 78 0.0027 29.5 6.3 62 52-116 167-231 (392)
93 3qyf_A Crispr-associated prote 30.2 1.2E+02 0.0041 29.1 7.3 95 92-194 105-210 (324)
94 3nkl_A UDP-D-quinovosamine 4-d 29.3 82 0.0028 25.0 5.3 46 70-117 55-100 (141)
95 1xmp_A PURE, phosphoribosylami 29.2 58 0.002 28.3 4.5 48 64-118 50-98 (170)
96 2lnd_A De novo designed protei 28.8 1E+02 0.0034 23.7 5.2 84 51-153 22-105 (112)
97 2fep_A Catabolite control prot 28.7 2E+02 0.0069 25.4 8.5 77 69-161 61-140 (289)
98 3bbl_A Regulatory protein of L 28.0 2.2E+02 0.0076 25.0 8.6 78 68-161 52-132 (287)
99 3rg8_A Phosphoribosylaminoimid 27.7 88 0.003 26.9 5.3 49 63-118 40-90 (159)
100 1dbq_A Purine repressor; trans 27.4 2.7E+02 0.0094 24.2 9.1 76 69-160 52-132 (289)
101 3clk_A Transcription regulator 26.1 1.1E+02 0.0038 27.0 6.2 77 69-161 54-132 (290)
102 1u11_A PURE (N5-carboxyaminoim 26.0 72 0.0024 28.1 4.5 44 68-118 64-108 (182)
103 2o20_A Catabolite control prot 25.7 2.9E+02 0.01 24.9 9.2 77 69-161 108-187 (332)
104 1vdr_A DHFR, dihydrofolate red 25.4 22 0.00075 30.1 1.1 51 68-125 81-131 (162)
105 3oow_A Phosphoribosylaminoimid 25.3 76 0.0026 27.5 4.5 86 64-174 44-134 (166)
106 1q77_A Hypothetical protein AQ 24.9 51 0.0017 25.8 3.2 41 69-116 98-138 (138)
107 3gfo_A Cobalt import ATP-bindi 24.8 62 0.0021 29.9 4.2 52 169-221 151-204 (275)
108 1o4v_A Phosphoribosylaminoimid 24.7 75 0.0026 28.0 4.4 49 64-119 52-101 (183)
109 3l8m_A Probable thiamine pyrop 24.4 1.1E+02 0.0038 27.1 5.7 68 24-92 23-101 (212)
110 3j21_Z 50S ribosomal protein L 24.3 2.4E+02 0.0081 21.5 7.0 47 68-117 19-65 (99)
111 3apt_A Methylenetetrahydrofola 23.6 74 0.0025 30.0 4.6 24 67-90 86-109 (310)
112 2yxb_A Coenzyme B12-dependent 23.3 2.7E+02 0.0093 23.2 7.7 104 39-145 28-145 (161)
113 1nu0_A Hypothetical protein YQ 23.3 56 0.0019 27.2 3.2 25 98-122 44-68 (138)
114 1cz3_A Dihydrofolate reductase 23.2 30 0.001 29.2 1.6 48 67-121 80-129 (168)
115 1tjy_A Sugar transport protein 23.1 2.6E+02 0.009 25.1 8.3 82 69-161 49-135 (316)
116 2fn9_A Ribose ABC transporter, 22.9 3.8E+02 0.013 23.3 11.1 43 69-115 47-89 (290)
117 2qru_A Uncharacterized protein 22.8 1.4E+02 0.0049 26.2 6.2 42 131-176 73-115 (274)
118 3uug_A Multiple sugar-binding 22.4 2E+02 0.0067 25.8 7.2 57 69-133 48-107 (330)
119 3fst_A 5,10-methylenetetrahydr 22.4 87 0.003 29.5 4.8 50 67-116 97-153 (304)
120 2x5n_A SPRPN10, 26S proteasome 22.2 1.6E+02 0.0054 25.4 6.2 50 68-117 89-145 (192)
121 3hs3_A Ribose operon repressor 21.9 27 0.00093 31.2 1.1 73 69-161 56-129 (277)
122 3hjn_A DTMP kinase, thymidylat 21.5 1.1E+02 0.0036 26.5 4.9 29 88-116 7-37 (197)
123 1sgw_A Putative ABC transporte 21.3 1.2E+02 0.0042 26.7 5.3 51 169-221 141-193 (214)
124 3lop_A Substrate binding perip 21.2 1.4E+02 0.0049 27.3 6.0 60 52-114 165-227 (364)
125 2q8u_A Exonuclease, putative; 21.0 1.2E+02 0.0041 28.1 5.5 52 69-121 50-108 (336)
126 1w41_A 50S ribosomal protein L 20.9 2.8E+02 0.0097 21.1 6.8 46 68-116 20-65 (101)
127 1fa2_A Beta-amylase; TIM barre 20.7 3.9E+02 0.013 27.0 9.2 85 69-153 36-169 (498)
128 2nq2_C Hypothetical ABC transp 20.4 1.6E+02 0.0054 26.5 6.0 51 169-220 136-188 (253)
129 3rot_A ABC sugar transporter, 20.3 1.5E+02 0.0051 26.4 5.8 43 69-115 50-92 (297)
130 3nxk_A Cytoplasmic L-asparagin 20.2 5.6E+02 0.019 24.3 10.3 71 67-146 72-145 (334)
131 1qpz_A PURA, protein (purine n 20.0 4.1E+02 0.014 23.9 9.0 76 69-160 103-183 (340)
No 1
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=4.7e-92 Score=718.55 Aligned_cols=363 Identities=39% Similarity=0.647 Sum_probs=312.8
Q ss_pred ecccCCCCCcHHHHHhhhc-------CC-EEEEEccchhhhhc---CCeEeCChhhHhchhhcCCccccccCCCCchHHH
Q 016855 4 ISSVICFCYSLPLFVKHLH-------HN-SLIEFQGGYRGFYS---KNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 72 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~-------~~-~V~G~~~G~~GL~~---~~~~~L~~~~v~~i~~~GGt~LGtsR~~~~~~~i 72 (381)
|-..|++|||||++|+++. ++ +||||++||+||++ +++++|+|.++++|+++|||+|||||++++.+++
T Consensus 102 IltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLGTsR~~~~~~~i 181 (487)
T 2hig_A 102 IVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEM 181 (487)
T ss_dssp EEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCCCCSCCCHHHH
T ss_pred EEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeeccCCCCCCHHHH
Confidence 4567999999999988653 45 99999999999964 6999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 016855 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 152 (381)
Q Consensus 73 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S 152 (381)
+++|++++||+||+||||||+++|++|++++.++|++++|||||||||||+++||+|||||||+++++++|+++++||.|
T Consensus 182 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~eaId~i~~tA~S 261 (487)
T 2hig_A 182 VDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVS 261 (487)
T ss_dssp HHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceEEEEecCCCccHHHHHHhhhcCC-ccEEEcCCCCCCCCChhhHHHHHHHHHHhCCceEEEEecCCCchhhhccCC
Q 016855 153 VENGVGIVKLMGRYSGFISMYATLASRD-VDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMP 231 (381)
Q Consensus 153 ~~~rv~iVEvMGR~aG~LAl~aaLA~~~-ad~iliPE~~~~~~~~~~~~~~I~~~~~~~~~~iIvVsEG~~~~~~~~~~~ 231 (381)
|++||||||||||+|||||+++|||+ + ||+|||||.||+++ ++++.|+++++.++|+|||||||+...+..
T Consensus 262 h~~rv~vVEVMGR~aG~LAl~agLA~-g~ad~ilIPE~p~~l~---~i~~~i~~r~~~k~~~IIvVaEGag~~~~~---- 333 (487)
T 2hig_A 262 ANYGVGVVKLMGRDSGFIAAQAAVAS-AQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQDWGR---- 333 (487)
T ss_dssp STTEEEEEEECCSSCCHHHHHHHHHH-TCCSEEECTTSCCCHH---HHHHHHHHHTTSCSEEEEEEETTTTGGGCC----
T ss_pred hcCcEEEEEeCCCCHHHHHHHHHHhh-CCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCCcccccc----
Confidence 97789999999999999999999999 7 99999999999988 899999999888899999999999644322
Q ss_pred ccccccccCCccchhhHHHHHHHHHhhhccc-cce-eeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCce
Q 016855 232 AVDEKDASGNRLLLDIGLWLTQKIKDHFTKV-QKM-MINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGF 309 (381)
Q Consensus 232 ~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~-~r~-~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~ 309 (381)
....+|++||+++++++++|+++++++++.. ... .+.+|+++|||+||||+||++||.||++||.+||+++++|++|+
T Consensus 334 ~~~~~Da~G~~~l~~i~~~l~~~i~~~~~~~g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~~l~~G~tg~ 413 (487)
T 2hig_A 334 GSGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGC 413 (487)
T ss_dssp C--CBCTTSCBCCCCHHHHHHHHHHHHHHTTTTTSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTEESE
T ss_pred cccccccccCcchhHHHHHHHHHHHHHHhhcCccccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 1235799999999999999999999987421 111 12578999999999999999999999999999999999999999
Q ss_pred EEEEeCCccccccHHHHHhhCCCCCCChHHHHHHHHhcCCCCCCChHHHhHHhhhhcccccccccCCCC
Q 016855 310 TVGPVNSRHAYIPIARVTETQKTVKLTDRMWARLLASTNQPSFLNCSEVLHHQEKAGRKTTEVINSERT 378 (381)
Q Consensus 310 mv~~~~~~~~~vpl~~~~~~~k~v~~~~~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (381)
||++++++++.+||+++++..|+++++..||.+++..++|+. +-...++ +..=|+..|-||-+|.
T Consensus 414 mVgi~~~~i~~vPl~ev~~~~k~v~~~~~~w~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~ 478 (487)
T 2hig_A 414 IIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLG--SDVRLAR--KLEIRRELEAINRNRD 478 (487)
T ss_dssp EEEEETTEEEEEEHHHHTTEEEEECTTSHHHHHHHHHSCCCC---------------------------
T ss_pred EEEEECCEEEEEEHHHHHccCCCcCcchHHHHHHHHHhCCcc--hhhHhhh--HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877 3333433 2234566777877764
No 2
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=1.7e-87 Score=656.16 Aligned_cols=296 Identities=25% Similarity=0.329 Sum_probs=274.1
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCCC-----chHHH
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNKI 72 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~~~i 72 (381)
|-..|++|||||++|+++.. ++||||++||+||+++++++|+|.++++|+++|||+|||||+++ +++++
T Consensus 6 IltsGGdapGmNaair~vv~~a~~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~~~~~~~ 85 (319)
T 1zxx_A 6 ILTSGGDAPGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEEEGQLAG 85 (319)
T ss_dssp EEECSSCCTTHHHHHHHHHHHHHTTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSHHHHHHH
T ss_pred EEccCCCchhHHHHHHHHHHHHHHCCCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCCHHHHHHH
Confidence 45679999999999987643 89999999999999999999999999999999999999999864 58899
Q ss_pred HHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 016855 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 152 (381)
Q Consensus 73 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S 152 (381)
+++|++++||+||+||||||+++|++|+++ + ++|||||||||||+++||+|||||||+++++++|+++++||.|
T Consensus 86 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~----~--i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i~~ta~s 159 (319)
T 1zxx_A 86 IEQLKKHGIDAVVVIGGDGSYHGALQLTRH----G--FNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASS 159 (319)
T ss_dssp HHHHHHTTCCEEEEEECHHHHHHHHHHHHT----T--CCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEECCchHHHHHHHHHHh----C--CCEEEEeecccCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999874 4 7799999999999999999999999999999999999999999
Q ss_pred cCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCceEEEEecCCCchhhhccCC
Q 016855 153 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEFVAQSMP 231 (381)
Q Consensus 153 ~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~~iIvVsEG~~~~~~~~~~~ 231 (381)
|+ ||||||||||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|+|||||||+..
T Consensus 160 ~~-rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~-------- 226 (319)
T 1zxx_A 160 HH-RVFIVNVMGRNCGDIAMRVGVAC-GADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVMT-------- 226 (319)
T ss_dssp TT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCCCEEEEEETTTCC--------
T ss_pred CC-CEEEEEeCCCCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcCh--------
Confidence 85 89999999999999999999999 899999999999987 899999999875 68999999999842
Q ss_pred ccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEE
Q 016855 232 AVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTV 311 (381)
Q Consensus 232 ~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv 311 (381)
+++|+++|+++++. .+|+++|||+||||+||++||.||++||.+||+++++|++|+||
T Consensus 227 ----------------~~~l~~~i~~~~~~------~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv 284 (319)
T 1zxx_A 227 ----------------ADQFMAELKKYGDF------DVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGLAV 284 (319)
T ss_dssp ----------------HHHHHHHHHHSSCC------CEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred ----------------HHHHHHHHHHhhCc------eEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 45799999988764 46777899999999999999999999999999999999999999
Q ss_pred EEeCCccccccHHHHHhhCCCCCCChHHH
Q 016855 312 GPVNSRHAYIPIARVTETQKTVKLTDRMW 340 (381)
Q Consensus 312 ~~~~~~~~~vpl~~~~~~~k~v~~~~~~~ 340 (381)
++++++++.+||+++++..|+++++....
T Consensus 285 ~~~~~~~~~~pl~~~~~~~k~~~~~~~~~ 313 (319)
T 1zxx_A 285 GIENGKVTSHDILDLFDESHRGDYDLLKL 313 (319)
T ss_dssp EEETTEEEEEEHHHHTTCCCCCCTHHHHH
T ss_pred EEECCEEEEEEHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999998754433
No 3
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=2.3e-87 Score=655.55 Aligned_cols=298 Identities=24% Similarity=0.331 Sum_probs=274.3
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCCC-----chHHH
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNKI 72 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~~~i 72 (381)
|-..|++|||||++|+++.. ++||||++||+||+++++++|+|.++++|+++|||+|||||+++ +++++
T Consensus 7 IltsGGdapGmNaair~vv~~a~~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~~~~~~~ 86 (320)
T 1pfk_A 7 VLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVA 86 (320)
T ss_dssp EEECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSHHHHHHH
T ss_pred EEccCCCchhHHHHHHHHHHHHHHCCCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCCHHHHHHH
Confidence 45679999999999996643 89999999999999999999999999999999999999999863 47899
Q ss_pred HHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 016855 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 152 (381)
Q Consensus 73 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S 152 (381)
+++|++++||+||+||||||+++|++|+++ +++|||||||||||+++||+|||||||+++++++|+++++||.|
T Consensus 87 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i~~ta~s 160 (320)
T 1pfk_A 87 IENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS 160 (320)
T ss_dssp HHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999873 47799999999999999999999999999999999999999999
Q ss_pred cCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCceEEEEecCCCchhhhccCC
Q 016855 153 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEFVAQSMP 231 (381)
Q Consensus 153 ~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~~iIvVsEG~~~~~~~~~~~ 231 (381)
|+ ||||||||||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|+|||||||+..
T Consensus 161 ~~-rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~-------- 227 (320)
T 1pfk_A 161 HQ-RISVVEVMGRYCGDLTLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMCD-------- 227 (320)
T ss_dssp HT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEESSSSC--------
T ss_pred CC-CEEEEEeCCcCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcch--------
Confidence 96 89999999999999999999999 799999999999987 899999999865 68999999999841
Q ss_pred ccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEE
Q 016855 232 AVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTV 311 (381)
Q Consensus 232 ~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv 311 (381)
+++|+++|+++++. .+|+++|||+||||+||++||.||++||.+||+++++|++|+||
T Consensus 228 ----------------~~~la~~i~~~~~~------~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv 285 (320)
T 1pfk_A 228 ----------------VDELAHFIEKETGR------ETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCV 285 (320)
T ss_dssp ----------------HHHHHHHHHHHHSS------CEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHTCCSEEE
T ss_pred ----------------HHHHHHHHHHHhCC------eEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 56899999988764 45677899999999999999999999999999999999999999
Q ss_pred EEeCCccccccHHHHH-hhCCCCCCChHHHHH
Q 016855 312 GPVNSRHAYIPIARVT-ETQKTVKLTDRMWAR 342 (381)
Q Consensus 312 ~~~~~~~~~vpl~~~~-~~~k~v~~~~~~~~~ 342 (381)
++++++++.+||+++. ++.|+++++...+.+
T Consensus 286 ~~~~~~~~~~pl~~~~~~~~k~~~~~~~~~~~ 317 (320)
T 1pfk_A 286 GIQNEQLVHHDIIDAIENMKRPFKGDWLDCAK 317 (320)
T ss_dssp EEETTEEEEEEHHHHHHHCCCCCCHHHHHHHH
T ss_pred EEECCEEEEEEHHHHHhhCCCCCCHHHHHHHH
Confidence 9999999999999999 888988865444333
No 4
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=8.9e-87 Score=672.29 Aligned_cols=332 Identities=16% Similarity=0.199 Sum_probs=282.6
Q ss_pred eecccCCCCCcHHHHHhhhcC------C---EEEEEccchhhhhcCCeEeCC---hhhHhchhhcCCccccccCCCC---
Q 016855 3 IISSVICFCYSLPLFVKHLHH------N---SLIEFQGGYRGFYSKNTLTLS---PKVVNDIHKRGGTILRTSRGGH--- 67 (381)
Q Consensus 3 ~~~~~~~~~pg~~~vi~gl~~------~---~V~G~~~G~~GL~~~~~~~L~---~~~v~~i~~~GGt~LGtsR~~~--- 67 (381)
.|-..|++|||||++|+|+.. + +||||++||+||+++++++|+ +.++++|+++|||+|||||+++
T Consensus 7 ~VltsGGdapGmNa~Ir~vv~~a~~~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGtiLGSsR~~~~~~ 86 (419)
T 3hno_A 7 FYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSGAFGSCRYKLKSL 86 (419)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHHHHHCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSCTTCCCCCC----
T ss_pred EEEccCCChHHHHHHHHHHHHHHHHcCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCceecCCCCCcccc
Confidence 345679999999999997754 6 999999999999999999885 4589999999999999999863
Q ss_pred -----chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHH
Q 016855 68 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA 142 (381)
Q Consensus 68 -----~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~a 142 (381)
++++++++|++++||+||+|||||||++|++|+++++++|++++||||||||||||++||+|||||||+++++++
T Consensus 87 ~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~~~~~~ 166 (419)
T 3hno_A 87 EQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVS 166 (419)
T ss_dssp --CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHHHHHHH
Confidence 478999999999999999999999999999999999888988999999999999999999999999999999999
Q ss_pred HHHH-HHhhhhcC--cceEEEEecCCCccHHHHHHhhh-----cCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCceE
Q 016855 143 INAA-HVEVESVE--NGVGIVKLMGRYSGFISMYATLA-----SRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMV 214 (381)
Q Consensus 143 i~~l-~~tA~S~~--~rv~iVEvMGR~aG~LAl~aaLA-----~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~~~~i 214 (381)
++++ ++++.+|. +||||||||||+|||||+++||| + +||+|||||.||+++ ++++.|++++++++|+|
T Consensus 167 i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~-gad~ilIPE~~f~~~---~~~~~i~~~~~~~~~~i 242 (419)
T 3hno_A 167 TLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPERE-IPVVILFPEISFDKQ---KFLAKVDSCVKKFGYCS 242 (419)
T ss_dssp HHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSC-CCEEEECTTSCCCHH---HHHHHHHHHHHHHSCEE
T ss_pred HHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCC-CceEEEeCCCCCCHH---HHHHHHHHHHHhCCCEE
Confidence 9997 44444432 27999999999999999999999 5 799999999999987 89999999998889999
Q ss_pred EEEecCCCchhhhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCC--CChhhHHHHH
Q 016855 215 IVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIP--SNGSDNIYCT 292 (381)
Q Consensus 215 IvVsEG~~~~~~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~--P~~~Dr~la~ 292 (381)
||||||+.... .+.+.....+|+|||+++++++++|+++|+++++. .+|+++|||+||||+ ||++||.+|+
T Consensus 243 IvVaEG~~~~~-g~~i~~~~~~D~~G~~~l~gi~~~la~~i~~~~g~------~~R~~~lGh~QRgg~p~ps~~Dr~la~ 315 (419)
T 3hno_A 243 VVVSEGVKGDD-GKFLSDQGVRDAFGHAQLGGVAPVVASMVKEGLGL------KYHWGVADYLQRAARHIASKTDVEQAY 315 (419)
T ss_dssp EEEETTCCCSS-SCC---------------CCSHHHHHHHHHHHHCC------CEEEEECTHHHHSCGGGCBHHHHHHHH
T ss_pred EEEeCCCcccC-CcchhcccccccccCcccCcHHHHHHHHHHHHhCC------ceEEcccchhhccCCCCCCHHHHHHHH
Confidence 99999987521 11222234589999999999999999999999875 466778999999999 8999999999
Q ss_pred HHHHHHHHHHHcCCCceEEEEeCC-------ccccccHHHHHhhCCCCCC------------ChHHHHHHHH
Q 016855 293 LLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIARVTETQKTVKL------------TDRMWARLLA 345 (381)
Q Consensus 293 ~lG~~Av~~~~~G~sg~mv~~~~~-------~~~~vpl~~~~~~~k~v~~------------~~~~~~~~l~ 345 (381)
+||.+||+++++|++|+||+++++ ++..+||+++++..|+|++ +...|.+.|.
T Consensus 316 ~lG~~Av~~~~~G~~g~mv~~~~~~~~~y~~~~~~vpl~~~~~~~k~v~~~~i~~~g~~vt~~~~~y~~pli 387 (419)
T 3hno_A 316 AMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANVEKMMPENFITEDGFGITDLCREYLAPLI 387 (419)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEEEEEC-CCEEEEEEEEHHHHSSCCCCCCGGGBCTTSSSBCHHHHHHHGGGG
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCccccEEEEeeHHHHhcccCCCCHHHHhhccCCccHHHHHHHHHHh
Confidence 999999999999999999999986 6899999999998887764 3456777666
No 5
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=2e-85 Score=643.08 Aligned_cols=300 Identities=28% Similarity=0.389 Sum_probs=274.9
Q ss_pred ecccCCCCCcHHHHHhhhc------CCEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCC-----CchHHH
Q 016855 4 ISSVICFCYSLPLFVKHLH------HNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-----HDTNKI 72 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~------~~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~-----~~~~~i 72 (381)
|-..|++|||||++|+|+. +++|||+++||+||+++++++|+++++++|+++|||+|||||++ ++++++
T Consensus 6 IltsGG~~pG~Na~ir~vv~~a~~~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~~e~~~~~ 85 (319)
T 4a3s_A 6 VLTSGGDSPGMNAAVRAVVRKAIYHDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTVEGREKG 85 (319)
T ss_dssp EEEESSCCTTHHHHHHHHHHHHHHTTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSCTTCCCCCHHHHSHHHHHHH
T ss_pred EECcCCCcHHHHHHHHHHHHHHHHCCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCCccccCCCCccccHHHHHHH
Confidence 3467999999999999874 38999999999999999999999999999999999999999985 368899
Q ss_pred HHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 016855 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 152 (381)
Q Consensus 73 ~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S 152 (381)
+++|++++||+||+|||||||++|++|+++ + ++|||||||||||+++||+|||||||+++++++++++++||.|
T Consensus 86 ~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~----~--i~vigiPkTIDNDl~~td~t~GfdTA~~~~~~ai~~i~~~a~s 159 (319)
T 4a3s_A 86 IANLKKLGIEGLVVIGGDGSYMGAKKLTEH----G--FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATS 159 (319)
T ss_dssp HHHHHHHTCCEEEEEECTTHHHHHHHHHHT----T--CCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcHHHHHHHHHhcc----C--CcEEEeeccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999999763 4 6799999999999999999999999999999999999999999
Q ss_pred cCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCceEEEEecCCCchhhhccCC
Q 016855 153 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEFVAQSMP 231 (381)
Q Consensus 153 ~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~~iIvVsEG~~~~~~~~~~~ 231 (381)
|+ ||||||||||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|++||||||+..
T Consensus 160 ~~-rv~ivEvMGR~aG~lA~~a~la~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~iivvaEG~~~-------- 226 (319)
T 4a3s_A 160 HE-RTYVIEVMGRHAGDIALWAGLAG-GAESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVGS-------- 226 (319)
T ss_dssp HT-CEEEEEECCTTCCHHHHHHHHHH-TCSEEEBTTBCCCHH---HHHHHHHHHHTTTCCCEEEEEETTTCC--------
T ss_pred cC-CeEEEEeCCcchhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHcCCCceEEEEECCCCc--------
Confidence 85 79999999999999999999999 899999999999988 899999998877 58999999999853
Q ss_pred ccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEE
Q 016855 232 AVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTV 311 (381)
Q Consensus 232 ~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv 311 (381)
..++++.++++++. .+|+++|||+||||+||++||.+|++||.+||+++++|++|+||
T Consensus 227 ----------------~~~~~~~~~~~~g~------~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G~~g~mv 284 (319)
T 4a3s_A 227 ----------------GVEFGKRIEEETNL------ETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEGKGGRCV 284 (319)
T ss_dssp ----------------HHHHHHHHHHHHCC------CEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTTCCSEEE
T ss_pred ----------------chHHHHHHHHhCCc------eEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 23678888888775 45677899999999999999999999999999999999999999
Q ss_pred EEeCCccccccHHHHHhhCCCCCCChHHHHHHH
Q 016855 312 GPVNSRHAYIPIARVTETQKTVKLTDRMWARLL 344 (381)
Q Consensus 312 ~~~~~~~~~vpl~~~~~~~k~v~~~~~~~~~~l 344 (381)
++++++++.+||+++++..|+++++..+..+.|
T Consensus 285 ~~~~~~~~~~pl~~~~~~~k~v~~~~~~~a~~l 317 (319)
T 4a3s_A 285 GIQNNKLVDHDIIEILETKHTVEQNMYQLSKEL 317 (319)
T ss_dssp EEETTEEEEEEHHHHSSSCCCCCHHHHHHHHHH
T ss_pred EEECCEEEEEeHHHHHhccCCCCHHHHHHHHhc
Confidence 999999999999999999999998654444444
No 6
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=2.5e-82 Score=675.77 Aligned_cols=336 Identities=20% Similarity=0.287 Sum_probs=302.9
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcC--CeEeCChhhHhchhhcCCccccccCCCC-----chH
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTN 70 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~--~~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~~ 70 (381)
|-..|++|||||++|+++.. ++||||++||+||+++ ++++|+|+++++|+++|||+|||||+++ +++
T Consensus 20 IltsGGdaPGmNaaIravvr~a~~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~~f~~~~~~~ 99 (762)
T 3o8l_A 20 VLTSGGDAQGMNAAVRAVVRVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKDFREREGRL 99 (762)
T ss_dssp EECCSSCCTTHHHHHHHHHHHHHHTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCCGGGSHHHHH
T ss_pred EEccCCCchhHhHHHHHHHHHHHHCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCCcccCHHHHH
Confidence 45679999999998875443 8999999999999999 8999999999999999999999999864 478
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHH-----------------HHHcCCCceEeeeccccccCccCCCCCCChH
Q 016855 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 133 (381)
Q Consensus 71 ~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~-----------------~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFd 133 (381)
+++++|++++||+||+||||||+++|+.|+++ +.+++.+++|||||||||||+++||+|||||
T Consensus 100 ~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfd 179 (762)
T 3o8l_A 100 RAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTD 179 (762)
T ss_dssp HHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSSCSCCBTHH
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCCCcCCcCch
Confidence 99999999999999999999999999988653 2334567999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCc
Q 016855 134 TAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGH 212 (381)
Q Consensus 134 TA~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~ 212 (381)
||+++++++|+++++||.||+ |+||||||||+|||||+++|||+ +||+|||||.||++++++++++.|+++.++ ++|
T Consensus 180 TA~~~i~eaid~i~~tA~Sh~-Rv~iVEvMGR~aG~LAl~aglA~-gad~ilIPE~p~~~~~~~~~~~~i~~~~~~gk~~ 257 (762)
T 3o8l_A 180 SALHRITEIVDAITTTAQSHQ-RTFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSETRTRGSRL 257 (762)
T ss_dssp HHHHHHHHHHHHHHTTCCSSC-CEEEEEECCSSCCHHHHHHHHHH-TCSBCCCTTSCCCSSCHHHHHHHHHHHHHTTCSC
T ss_pred hHHHHHHHHHHHHHHhhhcCc-cEEEEEeCCcchhHHHHHHHHhc-CCCEEEecCCCCCcchHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999985 79999999999999999999999 899999999999998777899999988766 478
Q ss_pred eEEEEecCCCchhhhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHH
Q 016855 213 MVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCT 292 (381)
Q Consensus 213 ~iIvVsEG~~~~~~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~ 292 (381)
+|||||||+. |++|++.. +++|+++|+++++.+ +|.++|||+||||+||++||.+|+
T Consensus 258 ~iVvVaEGa~--------------d~~G~~i~---~~~l~~~i~~~~g~~------~R~tvLGh~QRgg~Psa~Dr~lat 314 (762)
T 3o8l_A 258 NIIIVAEGAI--------------DRNGKPIT---SEGVKDLVVRRLGYD------TRVTVLGHVQRGGTPSAFDRILGS 314 (762)
T ss_dssp CBBCEETTCC--------------CSSSCCCC---HHHHHHHHHHHTCCC------EEEECCCSSTTCSCCCHHHHHHHH
T ss_pred eEEEEeCCcc--------------CCCCCCcH---HHHHHHHHHHHhCCC------cceeecCccccCCCCChHHHHHHH
Confidence 9999999984 56777654 568999999988754 566789999999999999999999
Q ss_pred HHHHHHHHHHHcCC---CceEEEEeCCccccccHHHHHhhCCCCCC--ChHHHHHHHHhcCCCCCCChHHHhHHhhhh
Q 016855 293 LLAHSAVHGAMAGF---TGFTVGPVNSRHAYIPIARVTETQKTVKL--TDRMWARLLASTNQPSFLNCSEVLHHQEKA 365 (381)
Q Consensus 293 ~lG~~Av~~~~~G~---sg~mv~~~~~~~~~vpl~~~~~~~k~v~~--~~~~~~~~l~~~~~~~F~~~~~~~~~~~~~ 365 (381)
+||.+||+++++|+ +++||++++++++.+||++++...|.|++ +..+|.+.+..++ ++|.++.+.|+.++..
T Consensus 315 ~lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~~~~~~~a~~~rg-~~f~~~~~~~~~~~~~ 391 (762)
T 3o8l_A 315 RMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMDEKRFDEAMKLRG-RSFMNNWEVYKLLAHI 391 (762)
T ss_dssp HHHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHSSCHHHHHHHHC-THHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhccchHHHHHHhhC-chHHHHHHHHHHhcCC
Confidence 99999999999999 89999999999999999999999998886 4568999999986 6799999999887643
No 7
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=2.8e-81 Score=650.30 Aligned_cols=339 Identities=23% Similarity=0.314 Sum_probs=286.5
Q ss_pred ecccCCCCCcHHHHHhhhc--------CCEEEEEccchhhhhcCCeEeCChhhHhchhhcCC-ccccccCCCC----chH
Q 016855 4 ISSVICFCYSLPLFVKHLH--------HNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGG-TILRTSRGGH----DTN 70 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~--------~~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GG-t~LGtsR~~~----~~~ 70 (381)
|-..|++|||||++|+|+. +++||||++||+||+++++++|+|.++++|+++|| |+|||||++. +++
T Consensus 77 IltsGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~ 156 (555)
T 2f48_A 77 IILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYN 156 (555)
T ss_dssp EEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHH
T ss_pred EECcCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHH
Confidence 4457999999999998762 37999999999999999999999999999999999 7999999863 578
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC--CCCCChHHHHHHHHHHHHHHHH
Q 016855 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAHV 148 (381)
Q Consensus 71 ~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t--D~tiGFdTA~~~~~~ai~~l~~ 148 (381)
+++++|++++||+||+||||||+++|++|++++.+++++++|||||||||||+++| |+|||||||+++++++|++++.
T Consensus 157 ~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId~i~~ 236 (555)
T 2f48_A 157 KALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCR 236 (555)
T ss_dssp HHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888 9999999999999999999999
Q ss_pred hhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCC----CCCCC-hhhHHHHHHHHHHh-CCceEEEEecCCC
Q 016855 149 EVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP----FYLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAG 222 (381)
Q Consensus 149 tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~----~~~~~-~~~~~~~I~~~~~~-~~~~iIvVsEG~~ 222 (381)
||.||++||||||||||+|||||+++|||+ +||+|||||+| +++++ ..++++.|++|..+ ++|+|||||||+.
T Consensus 237 da~s~~~rv~iVEvMGR~aG~lAl~a~LA~-gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~~ 315 (555)
T 2f48_A 237 DAMSTKKYWHFVKLMGRSASHVALECALKT-HPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLI 315 (555)
T ss_dssp HHHHHCCCEEEEEECCTTSCHHHHHHHHHH-CCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGG
T ss_pred HHHHcCCcEEEEEeCCcCHHHHHHHHHhhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCCc
Confidence 999887789999999999999999999999 79999999986 44421 13556666766655 6899999999995
Q ss_pred chh--------------------------------hhc---------------cCCc--c---ccccccCCccchhh--H
Q 016855 223 QEF--------------------------------VAQ---------------SMPA--V---DEKDASGNRLLLDI--G 248 (381)
Q Consensus 223 ~~~--------------------------------~~~---------------~~~~--~---~~~D~~G~~~l~~i--~ 248 (381)
... ... .+.. . ..+|++||++++++ +
T Consensus 316 ~~~~~~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i~t~ 395 (555)
T 2f48_A 316 EFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTE 395 (555)
T ss_dssp GTSHHHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHH
T ss_pred cccchHHHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccccHH
Confidence 310 000 0000 0 25799999999987 5
Q ss_pred HHHHHHHHhhhccccc-----eeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCCc------
Q 016855 249 LWLTQKIKDHFTKVQK-----MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSR------ 317 (381)
Q Consensus 249 ~~l~~~i~~~~~~~~r-----~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G~sg~mv~~~~~~------ 317 (381)
++|+++|+++++...+ ..+..+...|||+||||.||++||.||++||..||+++++|++|+||++++++
T Consensus 396 ~~L~~~v~~~l~~~~~~~~~~~~~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~~~~w 475 (555)
T 2f48_A 396 KLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDW 475 (555)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGGC
T ss_pred HHHHHHHHHHHHHHhcccCcccceeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccce
Confidence 6666666666543211 12345667799999999999999999999999999999999999999999876
Q ss_pred -cccccHHHHHhhC------------CCCCCChHHHHHH
Q 016855 318 -HAYIPIARVTETQ------------KTVKLTDRMWARL 343 (381)
Q Consensus 318 -~~~vpl~~~~~~~------------k~v~~~~~~~~~~ 343 (381)
+..+||.++++.. +.|+.++..|..+
T Consensus 476 ~~~~vPl~~~~n~ek~~g~~~p~i~~~~Vdl~~~~f~~~ 514 (555)
T 2f48_A 476 IAGGVPLTMLMNMEERYGEKKPVIKKALVDLEGRPFKEF 514 (555)
T ss_dssp EEEEEEGGGGEEEEEETTEEEEEECCCCCCTTSHHHHHH
T ss_pred EEEeeeHHHHhhhhhhcCccccceeeeeeCCCCHHHHHH
Confidence 7899999998754 3577777666543
No 8
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-80 Score=657.05 Aligned_cols=337 Identities=19% Similarity=0.252 Sum_probs=292.1
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcCC---eEeCChhhHhchhhcCCccccccCCCC-----ch
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSKN---TLTLSPKVVNDIHKRGGTILRTSRGGH-----DT 69 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~~---~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~ 69 (381)
|-..|++|||||++|+++.. ++||||++||+||++++ +.+|+|.+|++|+++|||+|||||+++ ++
T Consensus 8 IltsGGdapGmNaaIravvr~a~~~g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~~~~~~~~ 87 (766)
T 3o8o_B 8 VMTSGGDAPGMNSNVRAIVRSAIFKGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCMEFKKREGR 87 (766)
T ss_dssp EEEESSCCTTHHHHHHHHHHHHHHHTCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSGGGSHHHH
T ss_pred EEeeCCCchhHHHHHHHHHHHHHHCCCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCcccCHHHH
Confidence 45579999999999986533 89999999999999986 789999999999999999999999864 36
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHH-----------------HHHcCCCceEeeeccccccCccCCCCCCCh
Q 016855 70 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAVIDKSFGF 132 (381)
Q Consensus 70 ~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~-----------------~~~~g~~i~vIgIPkTIDNDi~~tD~tiGF 132 (381)
.+++++|++++||+||+|||||||++|++|+++ ..+++.+++|||||||||||+++||+||||
T Consensus 88 ~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~gTD~TiGf 167 (766)
T 3o8o_B 88 LLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGA 167 (766)
T ss_dssp HHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTTCSCCBTH
T ss_pred HHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCCCCCCCCh
Confidence 789999999999999999999999999988653 223455788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC-hhhHHHHHHHHHHh-C
Q 016855 133 DTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-PGGLFEFIERQLKE-N 210 (381)
Q Consensus 133 dTA~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~-~~~~~~~I~~~~~~-~ 210 (381)
|||+++++++||++++||.||+ |+||||||||+|||||+++|||+ +||+|||||.||+++. +.++++.++++.++ +
T Consensus 168 dTA~~~i~eaid~i~~tA~Sh~-RvfvVEvMGR~aG~LAl~aglA~-gAd~ilIPE~p~~~~~~~~~v~~~i~~~~~~gk 245 (766)
T 3o8o_B 168 YSALDRICKAIDYVEATANSHS-RAFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDIVSKHRSRGK 245 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTCCCCTTHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHhhhhccC-ceEEEEcCCcchhHHHHHHHHhc-CCCEEEccCCCCChHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999985 79999999999999999999999 8999999999999872 12344444444433 5
Q ss_pred CceEEEEecCCCchhhhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHH
Q 016855 211 GHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIY 290 (381)
Q Consensus 211 ~~~iIvVsEG~~~~~~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~l 290 (381)
+|+|||||||+.+. .++.. .+++++++|+++++.+ +|.++|||+||||+|+++||.+
T Consensus 246 ~~~IVvVaEGa~~~--------------~~~~~---~~~~l~~~i~~~~g~~------~R~tvLGh~QRGG~Psa~DR~l 302 (766)
T 3o8o_B 246 RTTIVVVAEGAIAA--------------DLTPI---SPSDVHKVLVDRLGLD------TRITTLGHVQRGGTAVAYDRIL 302 (766)
T ss_dssp CCEEEEEETTCBCT--------------TSCBC---CHHHHHHHHHHTTCCC------EEEEECGGGGTCSCCCHHHHHH
T ss_pred CceEEEEeCCcccc--------------cCCcc---hHHHHHHHHHHHhCCc------eeEcccChhhcCCCCChhhHHH
Confidence 79999999998632 22221 1568899998887754 5667899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC---ceEEEEeCCccccccHHHHHhhCCCCC--CChHHHHHHHHhcCCCCCCChHHHhHHhhhh
Q 016855 291 CTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIARVTETQKTVK--LTDRMWARLLASTNQPSFLNCSEVLHHQEKA 365 (381)
Q Consensus 291 a~~lG~~Av~~~~~G~s---g~mv~~~~~~~~~vpl~~~~~~~k~v~--~~~~~~~~~l~~~~~~~F~~~~~~~~~~~~~ 365 (381)
|++||.+||+++++|++ |+||++++++++.+||++++.+.|.|+ .+...|.+.+.++ .++|.++.+.|+.++..
T Consensus 303 At~~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr-~~~f~~~~~~~~~~~~~ 381 (766)
T 3o8o_B 303 ATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQAKDFKRAMSLR-DTEFIEHLNNFMAINSA 381 (766)
T ss_dssp HHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHS-CTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHhcCCHHHHHHcc-CHHHHHHHHHHHHhccC
Confidence 99999999999999997 899999999999999999999888877 3456899999995 69999999999988776
Q ss_pred c
Q 016855 366 G 366 (381)
Q Consensus 366 ~ 366 (381)
-
T Consensus 382 ~ 382 (766)
T 3o8o_B 382 D 382 (766)
T ss_dssp T
T ss_pred C
Confidence 4
No 9
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-79 Score=655.74 Aligned_cols=336 Identities=19% Similarity=0.264 Sum_probs=291.1
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcC--CeEeCChhhHhchhhcCCccccccCCCC-----chH
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTN 70 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~--~~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~~ 70 (381)
|-..|++|||||++|+++.. ++||||++||+||+++ ++.+|+|++|++|+++|||+|||||+++ ++.
T Consensus 10 IltsGGdaPGmNaaIravvr~a~~~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~f~~~~~~~ 89 (787)
T 3o8o_A 10 VMTSGGDSPGMNAAVRAVVRTGIHFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSMEFRKREGRR 89 (787)
T ss_dssp EEEESSCCTTHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCSGGGSHHHHH
T ss_pred EEeeCCCchhHHHHHHHHHHHHHHCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCCcccCHHHHH
Confidence 45679999999999886543 8999999999999998 6999999999999999999999999864 367
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHH-------HH----------HcCCCceEeeeccccccCccCCCCCCChH
Q 016855 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-------VE----------KRGLQVAVAGIPKTIDNDIAVIDKSFGFD 133 (381)
Q Consensus 71 ~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~-------~~----------~~g~~i~vIgIPkTIDNDi~~tD~tiGFd 133 (381)
+++++|++++||+||+|||||||++|++|+++ +. +++.+++|||||||||||+++||+|||||
T Consensus 90 ~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfd 169 (787)
T 3o8o_A 90 QAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAY 169 (787)
T ss_dssp HHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTTSSCCEEHH
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCCCCCCCCcH
Confidence 89999999999999999999999999987642 32 23457899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC-hhhHHHHHHHHHHh-CC
Q 016855 134 TAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-PGGLFEFIERQLKE-NG 211 (381)
Q Consensus 134 TA~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~-~~~~~~~I~~~~~~-~~ 211 (381)
||+++++++||++++||.||+ ||||||||||+|||||+++|||+ +||+|||||.||+++. +.++++.++++.++ ++
T Consensus 170 TAl~~i~eaid~i~~tA~Sh~-RvfvVEVMGR~aG~LAl~agLA~-gAd~ilIPE~p~~~~~~~~~v~~~i~~~~~~gk~ 247 (787)
T 3o8o_A 170 SALERICEMVDYIDATAKSHS-RAFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVCQRHRSKGRR 247 (787)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECGGGCBCTTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhhhccC-ceEEEEcCCcchhHHHHHHHHhh-CCCEEEeCCCCCChHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999985 79999999999999999999999 8999999999999872 22344555544433 57
Q ss_pred ceEEEEecCCCchhhhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHH
Q 016855 212 HMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYC 291 (381)
Q Consensus 212 ~~iIvVsEG~~~~~~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la 291 (381)
|+|||||||+.+. .++.. .+..++++|++ ++.+ +|.++|||+||||+|+++||.+|
T Consensus 248 ~~IVvVaEGa~~~--------------~~~~~---~~~~~~~~i~~-~g~~------~R~tvLGh~QRGG~Psa~DRilA 303 (787)
T 3o8o_A 248 NNTIIVAEGALDD--------------QLNPV---TANDVKDALIE-LGLD------TKVTILGHVQRGGTAVAHDRWLA 303 (787)
T ss_dssp CEEEEEETTCBBT--------------TSCBC---CHHHHHHHHHH-HTCC------EEEEECGGGGTCSCCCHHHHHHH
T ss_pred ceEEEEeCCCccc--------------cCcch---hHHHHHHHHHH-hCCc------ceeeccCHhhcCCCCChHHHHHH
Confidence 9999999999632 22222 14567888887 6644 55667999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC---ceEEEEeCCccccccHHHHHhhCCCCC--CChHHHHHHHHhcCCCCCCChHHHhHHhhhhc
Q 016855 292 TLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIARVTETQKTVK--LTDRMWARLLASTNQPSFLNCSEVLHHQEKAG 366 (381)
Q Consensus 292 ~~lG~~Av~~~~~G~s---g~mv~~~~~~~~~vpl~~~~~~~k~v~--~~~~~~~~~l~~~~~~~F~~~~~~~~~~~~~~ 366 (381)
++||.+||+++++|++ ++||++++++++.+||++++.+.|+|+ .+...|.+.+.++ .++|.++.+.|+.++..-
T Consensus 304 trlG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr-~~~f~~~~~~~~~~~~~~ 382 (787)
T 3o8o_A 304 TLQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIENKDFDKAISLR-DTEFIELYENFLSTTVKD 382 (787)
T ss_dssp HHHHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTS-CTTHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhcCCHHHHHhcc-CHHHHHHHHHHHHhccCC
Confidence 9999999999999997 799999999999999999999988887 5667899999995 699999999999887654
No 10
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.4e-79 Score=658.83 Aligned_cols=337 Identities=20% Similarity=0.277 Sum_probs=291.7
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcCC---eEeCChhhHhchhhcCCccccccCCCC-----ch
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSKN---TLTLSPKVVNDIHKRGGTILRTSRGGH-----DT 69 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~~---~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~ 69 (381)
|-..|++|||||++|+++.. ++||||++||+||++++ +.+|+|.+|++|+++|||+|||||+++ ++
T Consensus 186 IlTsGGdaPGmNAaIRaVVr~a~~~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~~f~~~~~~ 265 (941)
T 3opy_B 186 VMTSGGDSPGMNPFVRAVVRAGIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKEFRERSGR 265 (941)
T ss_dssp EEECSSCCTTHHHHHHHHHHHHHHTTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCSGGGSHHHH
T ss_pred EEeeCcCchhHHHHHHHHHHHHHHCCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCCcccCHHHH
Confidence 45679999999999885533 89999999999999986 889999999999999999999999864 35
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHH-----------------HHHcCCCceEeeeccccccCccCCCCCCCh
Q 016855 70 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAVIDKSFGF 132 (381)
Q Consensus 70 ~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~-----------------~~~~g~~i~vIgIPkTIDNDi~~tD~tiGF 132 (381)
.+++++|++++||+||+|||||||++|++|+++ ..+++.+++|||||||||||+++||+||||
T Consensus 266 ~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~gTD~TiGf 345 (941)
T 3opy_B 266 LKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATIGA 345 (941)
T ss_dssp HHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSSCSSCEEH
T ss_pred HHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCCCCCCCCCh
Confidence 689999999999999999999999999987642 334466789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCC-hhhHHHHHHHHHHh-C
Q 016855 133 DTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-PGGLFEFIERQLKE-N 210 (381)
Q Consensus 133 dTA~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~-~~~~~~~I~~~~~~-~ 210 (381)
|||+++++++||++++||.||+ |+||||||||+|||||+++|||+ +||+|||||.||+++. +.++++.++++.++ +
T Consensus 346 dTAv~~i~eaId~I~~tA~Sh~-RvfvVEVMGR~aG~LAl~agLA~-GAd~IlIPE~p~~~~~~~~~v~~~i~~~~~~gk 423 (941)
T 3opy_B 346 FSSLDRICRAIDYIDATANSHS-RAFIVEVMGRHCGWLGLLAGLAT-SADYILIPEKPASSREWQDQMCDIVGKHRARGK 423 (941)
T ss_dssp HHHHHHHHHHHHHHHSCC-CCS-EEEEEECCCSSCCHHHHHHHHHT-TCSEEECTTSCCCSSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhhccC-ceEEEEcCCCcccHHHHHHHHhc-CCCEEEECCCCCChHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999985 79999999999999999999999 8999999999999873 23455555555444 5
Q ss_pred CceEEEEecCCCchhhhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHH
Q 016855 211 GHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIY 290 (381)
Q Consensus 211 ~~~iIvVsEG~~~~~~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~l 290 (381)
+|+|||||||+.+ ..++.. .+.+++++|+++++. .+|.++|||+||||+|+++||.+
T Consensus 424 ~~~IVVVAEGa~~--------------~~~~~i---~~~~l~~~i~~~~g~------d~R~tvLGhiQRGG~Psa~DRil 480 (941)
T 3opy_B 424 RKTIVIVAEGAIS--------------NDLSPI---SCDQVKDVLVNRLGL------DTRVTTLGHVQRGGTAVAFDRIY 480 (941)
T ss_dssp CCEEEEECTTCBC--------------TTCCBC---CHHHHHHHHHHTSCC------EEEEEECGGGGTCSCCCHHHHHH
T ss_pred CcEEEEEeCCccc--------------ccCCcc---hHHHHHHHHHHHhCC------ceeecccChhhcCCCCChhhHHH
Confidence 7999999999963 223322 156888889888774 45667899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC---ceEEEEeCCccccccHHHHHhhCCCCC--CChHHHHHHHHhcCCCCCCChHHHhHHhhhh
Q 016855 291 CTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIARVTETQKTVK--LTDRMWARLLASTNQPSFLNCSEVLHHQEKA 365 (381)
Q Consensus 291 a~~lG~~Av~~~~~G~s---g~mv~~~~~~~~~vpl~~~~~~~k~v~--~~~~~~~~~l~~~~~~~F~~~~~~~~~~~~~ 365 (381)
|++||.+||+++++|++ |+||++++++++.+||++++.+.|.|+ .+...|.+.+.++ .++|.++.+.|+.++.+
T Consensus 481 AtrlG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~~~~~f~~a~~lr-~~~f~~~~~~~~~~~~~ 559 (941)
T 3opy_B 481 ATLQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIESRNFKKAISLR-DSEFVEHMKNFISTNSA 559 (941)
T ss_dssp HHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHS-CHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHHhcCCHHHHHHcc-CHHHHHHHHHHHHhccC
Confidence 99999999999999997 799999999999999999999888876 3456889999985 69999999999988765
Q ss_pred c
Q 016855 366 G 366 (381)
Q Consensus 366 ~ 366 (381)
.
T Consensus 560 ~ 560 (941)
T 3opy_B 560 D 560 (941)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=9.8e-79 Score=653.62 Aligned_cols=336 Identities=20% Similarity=0.251 Sum_probs=289.3
Q ss_pred ecccCCCCCcHHHHHhhhc------CCEEEEEccchhhhhcC--CeEeCChhhHhchhhcCCccccccCCCC-----chH
Q 016855 4 ISSVICFCYSLPLFVKHLH------HNSLIEFQGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTN 70 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~------~~~V~G~~~G~~GL~~~--~~~~L~~~~v~~i~~~GGt~LGtsR~~~-----~~~ 70 (381)
|-..|++|||||++|+++. +++||||++||+||+++ ++.+|+|.+|++|+++|||+|||||+++ +++
T Consensus 215 IlTSGGdaPGmNAaIRaVVr~a~~~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~f~~~e~~~ 294 (989)
T 3opy_A 215 IITSGGDAPGMNAAVRAVTRAGIFYGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKEFRERWGRL 294 (989)
T ss_dssp EEECSSCCTTHHHHHHHHHHHHHHTTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSSTTSHHHHH
T ss_pred EEeeCCCchhHHHHHHHHHHHHHHCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCCcccchhHHH
Confidence 4567999999999988553 38999999999999998 5899999999999999999999999864 467
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHH-------H----------HcCCCceEeeeccccccCccCCCCCCChH
Q 016855 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV-------E----------KRGLQVAVAGIPKTIDNDIAVIDKSFGFD 133 (381)
Q Consensus 71 ~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~-------~----------~~g~~i~vIgIPkTIDNDi~~tD~tiGFd 133 (381)
+++++|++++||+||+|||||||++|++|++++ . +.+.+++|||||||||||+++||+|||||
T Consensus 295 ~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~gTD~TiGFd 374 (989)
T 3opy_A 295 QACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAY 374 (989)
T ss_dssp HHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTTCSCCEEHH
T ss_pred HHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCCCCCCCChh
Confidence 899999999999999999999999999987532 2 22457899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCCh-hhHHHHHHHHHHh-CC
Q 016855 134 TAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGP-GGLFEFIERQLKE-NG 211 (381)
Q Consensus 134 TA~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~-~~~~~~I~~~~~~-~~ 211 (381)
||+++++++||++++||.||+ |+||||||||+|||||+++|||+ +||+|||||.||+++.. .++++.++++.++ ++
T Consensus 375 TAl~~i~eaId~I~~TA~Sh~-RvfVVEVMGR~aG~LAl~agLA~-GAd~IlIPE~pf~l~~~~~~l~~~i~k~~~~Gk~ 452 (989)
T 3opy_A 375 SSLERIIELVDYIDATAASHS-RAFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNWKDDLKKVCLRHREKGRR 452 (989)
T ss_dssp HHHHHHHHHHHHHHSSCCCTT-EEEEEECCCSSCTHHHHHHHHHH-TCSEEECTTSCCCTTTHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHhhhhccC-ceEEEEcCCCchhHHHHHHHHhc-CCCEEEeCCCCCChHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999985 79999999999999999999999 89999999999998731 2344444444333 47
Q ss_pred ceEEEEecCCCchhhhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHH
Q 016855 212 HMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYC 291 (381)
Q Consensus 212 ~~iIvVsEG~~~~~~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la 291 (381)
|+|||||||+.+. .++.. .++.+++.|++ ++. .+|.++|||+||||+|+++||.+|
T Consensus 453 ~~IVVVAEGa~~~--------------~~~~i---~~~~l~~~l~~-~G~------dtR~tvLGHiQRGG~Psa~DRilA 508 (989)
T 3opy_A 453 KTTVIVAEGAIDD--------------QLNPI---TSEEVKDVLVE-IGL------DTRITRLGHVQRGGAPCAFDRFLA 508 (989)
T ss_dssp EEEEEECTTCBCT--------------TSCBC---CHHHHHHHHHT-TTC------EEEEEECGGGGGCSCCCHHHHHHH
T ss_pred ceEEEEeCCcccc--------------ccccc---hHHHHHHHHHH-hCc------chhhhhhhHHHcCCCCChhhHHHH
Confidence 8999999998632 22221 14567777776 554 456678999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC---ceEEEEeCCccccccHHHHHhhCCCCC--CChHHHHHHHHhcCCCCCCChHHHhHHhhhhc
Q 016855 292 TLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIARVTETQKTVK--LTDRMWARLLASTNQPSFLNCSEVLHHQEKAG 366 (381)
Q Consensus 292 ~~lG~~Av~~~~~G~s---g~mv~~~~~~~~~vpl~~~~~~~k~v~--~~~~~~~~~l~~~~~~~F~~~~~~~~~~~~~~ 366 (381)
++||.+||+++++|.+ |+||++++++++.+||++++.+.|.|+ .+...|.+.+.++ .++|.++.+.|+.++..-
T Consensus 509 trlG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~~k~f~~a~~lr-~~~F~~~~~~~~~~~~~~ 587 (989)
T 3opy_A 509 TVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIEAKDFDKALQLR-DQEFATSYENFLSVSKYD 587 (989)
T ss_dssp HHHHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTS-CHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhccCHHHHHhcc-ChHHHHHHHHHHHhccCC
Confidence 9999999999999985 899999999999999999999988887 5667899999995 699999999999888653
No 12
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=1.1e-78 Score=647.90 Aligned_cols=316 Identities=18% Similarity=0.236 Sum_probs=272.4
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhhcCCeEeCChhhHhchhhcCCccccccCCC--CchHHHHHH
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG--HDTNKIVDN 75 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LGtsR~~--~~~~~i~~~ 75 (381)
|-..|++|||||++|+++.. ++||||++||+||+++++++|+|.++++|+++|||+|||||++ +++++++++
T Consensus 405 IltsGGdapGmNaaIravv~~~~~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGTsR~~~~~~~~~~~~~ 484 (762)
T 3o8l_A 405 VMNVGAPAAGMNAAVRSTVRIGLIQGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLPKKSFEQISAN 484 (762)
T ss_dssp EEEESSCCTTHHHHHHHHHHHHHHHTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSCSSCEECCCSGGGHHHHHHH
T ss_pred EEecCCCcHHHHHHHHHHHHHHHHCCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCceeecCCCCcHHHHHHHHHH
Confidence 45679999999999886543 8999999999999999999999999999999999999999986 479999999
Q ss_pred HHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcC-CCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhcC
Q 016855 76 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVE 154 (381)
Q Consensus 76 l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g-~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~~ 154 (381)
|++++||+||+|||||||++|++|++++.++. ++++|||||||||||+++||+|||||||+++++++||++++||.|++
T Consensus 485 l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~~~~aid~i~~tA~ssh 564 (762)
T 3o8l_A 485 ITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSAAGTK 564 (762)
T ss_dssp HHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHHHTTTTCSSS
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999877654 46889999999999999999999999999999999999999998545
Q ss_pred cceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCceEEEEecCCCchhhhccCCcc
Q 016855 155 NGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEFVAQSMPAV 233 (381)
Q Consensus 155 ~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~-~~~~iIvVsEG~~~~~~~~~~~~~ 233 (381)
+||||||||||+|||||+++|||+ +||+|||||.||+++...+.++.+++|+++ ++++|||||||+...+.
T Consensus 565 ~rv~vVEvMGR~aG~lAl~aglA~-gad~ilIPE~~~~l~~~~~~i~~~~~r~~~~~~~~iVvvaEga~~~~~------- 636 (762)
T 3o8l_A 565 RRVFIIETMGGYCGYLATMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNEKCNENYT------- 636 (762)
T ss_dssp CEEEEEEECSTTCCHHHHHHHHHT-TCSEEECSSSCCCHHHHHHHHHHHHHHHTSSCSEEEEEEETTSCSSSC-------
T ss_pred CcEEEEEeCCcchhHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHHHHHHHhcCCCceEEEEECCCCccch-------
Confidence 789999999999999999999999 899999999999998322223444555554 37899999999853221
Q ss_pred ccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC--------
Q 016855 234 DEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG-------- 305 (381)
Q Consensus 234 ~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G-------- 305 (381)
++++++.++++.. . .+.+|.++|||+||||+||++||.+|++||.+||+++.+|
T Consensus 637 --------------~~~~~~~~~~~~~--~--~~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~~l~~g~~~~~~~g 698 (762)
T 3o8l_A 637 --------------TDFIFNLYSEEGK--G--IFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKESYRNG 698 (762)
T ss_dssp --------------HHHHHHHHHHHTT--T--TCEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred --------------HHHHHHHHHhhcc--C--CceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 3466666655311 1 1356777899999999999999999999999999999987
Q ss_pred -------CCceEEEEeCCccccccHHHHHhhC--CCCCCChHHHHHHHH
Q 016855 306 -------FTGFTVGPVNSRHAYIPIARVTETQ--KTVKLTDRMWARLLA 345 (381)
Q Consensus 306 -------~sg~mv~~~~~~~~~vpl~~~~~~~--k~v~~~~~~~~~~l~ 345 (381)
++++||++++++++++||+++.+.. ++..|+.+||.++..
T Consensus 699 ~~~~~~~~~~~~vg~~~~~i~~~pl~e~~~~~d~~~r~~~~~~w~~~~~ 747 (762)
T 3o8l_A 699 RIFANTPDSGCVLGMRKRALVFQPVTELQNQTDFEHRIPKEQWWLKLRP 747 (762)
T ss_dssp SBCCCSSTTEEEEEEETTEEEEEEHHHHGGGEETTTTEESSCGGGGTHH
T ss_pred ccccccCCceEEEEEECCEEEEEEHHHHhhccchhhcCCCCchHHhHHH
Confidence 7999999999999999999998754 345577889976443
No 13
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-77 Score=634.28 Aligned_cols=313 Identities=20% Similarity=0.198 Sum_probs=271.6
Q ss_pred ecccCCCCCcHHHHHhhhc------CCEEEEEccchhhhhc-CCeEeCChhhHhchhhcCCccccccCCCC---chHHHH
Q 016855 4 ISSVICFCYSLPLFVKHLH------HNSLIEFQGGYRGFYS-KNTLTLSPKVVNDIHKRGGTILRTSRGGH---DTNKIV 73 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~------~~~V~G~~~G~~GL~~-~~~~~L~~~~v~~i~~~GGt~LGtsR~~~---~~~~i~ 73 (381)
|-..|++|||||++|+++. +++||||++||+||++ +++.+|+|.++++|+++|||+|||||+.+ ++++++
T Consensus 398 IltsGGdapGmNaaIravv~~a~~~g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt~LGTsR~~~~~~~~~~~~ 477 (766)
T 3o8o_B 398 IVNVGAPAGGINSAVYSMATYCMSQGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSEIGTNRVTPEEADLGMIA 477 (766)
T ss_dssp EEEESSCCTTHHHHHHHHHHHHHHHTCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSCTTCCCCCCGGGGCHHHHH
T ss_pred EEecCCCcHHHHHHHHHHHHHHHHCCCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCceEccCCCCCccchHHHHH
Confidence 4567999999999988663 3899999999999997 78999999999999999999999999853 688999
Q ss_pred HHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcC-CCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 016855 74 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 152 (381)
Q Consensus 74 ~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g-~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S 152 (381)
++|++++||+||+|||||||++|++|+++..++. ++++|||||||||||+++||+|||||||+++++++||++++||.|
T Consensus 478 ~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~~~~~~aid~i~~ta~s 557 (766)
T 3o8o_B 478 YYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASS 557 (766)
T ss_dssp HHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999987543221 357899999999999999999999999999999999999999988
Q ss_pred cCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHH---HHH--h---CCceEEEEecCCCch
Q 016855 153 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER---QLK--E---NGHMVIVVAEGAGQE 224 (381)
Q Consensus 153 ~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~---~~~--~---~~~~iIvVsEG~~~~ 224 (381)
+++||||||||||+|||||+++|||+ +||+|||||.||+++ +++++|++ +++ + +++.+|+++||+...
T Consensus 558 s~~rv~iVEvMGR~aG~lAl~aglA~-ga~~ilIPE~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~iivvaEg~~~~ 633 (766)
T 3o8o_B 558 TRGRAFVVDCQGGNSGYLATYASLAV-GAQVSYVPEEGISLE---QLSEDIEYLAQSFEKAEGRGRFGKLILKSTNASKA 633 (766)
T ss_dssp HSSEEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTTCCCHH---HHHHHHHHHHHHHHHHTTCTTCCEEEEEEGGGCSS
T ss_pred cCCcEEEEEeCCCchhHHHHHHHHhh-CCCEEEeCCCCCCHH---HHHHHHHHHHHHHhhhhccCCCceEEEEeCCcCCC
Confidence 44689999999999999999999999 899999999999998 78777754 333 1 356899999997432
Q ss_pred hhhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 016855 225 FVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMA 304 (381)
Q Consensus 225 ~~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~ 304 (381)
+ .+++|+++|+++++. .+.+|.++|||+||||+||++||.+|++||.+||+++++
T Consensus 634 ~---------------------~~~~la~~i~~~~~~----~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~ 688 (766)
T 3o8o_B 634 L---------------------SATKLAEVITAEADG----RFDAKPAYPGHVQQGGLPSPIDRTRATRMAIKAVGFIKD 688 (766)
T ss_dssp C---------------------CHHHHHHHHHHHHTT----SCEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C---------------------cHHHHHHHHHHHhCC----CceEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1 156889999887421 135677899999999999999999999999999999999
Q ss_pred CC----------------------CceEEEEeCCccccccHHHHHhhC---CCCCCChHHHHHHHH
Q 016855 305 GF----------------------TGFTVGPVNSRHAYIPIARVTETQ---KTVKLTDRMWARLLA 345 (381)
Q Consensus 305 G~----------------------sg~mv~~~~~~~~~vpl~~~~~~~---k~v~~~~~~~~~~l~ 345 (381)
|+ +++|||+++++++++|++++.+.. ++..|+.+||.++..
T Consensus 689 g~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~~~~~~~~d~~~r~~~~~~w~~~~~ 754 (766)
T 3o8o_B 689 NQAAIAEARAAEENFNADDKTISDTAAVVGVKGSHVVYNSIRQLYDYETEVSMRMPKVIHWQATRL 754 (766)
T ss_dssp TSHHHHHHSSSSSTTCCCCHHHHTTSEEEECSSSCCEEEEHHHHHHHTBCGGGSSBSSCSCHHHHH
T ss_pred CCcccccccccccccccccccCCCceEEEEEECCEEEEEeHHHHHhhccchhhCCCCChhHHhHHH
Confidence 99 899999999999999999988542 455677889987543
No 14
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-76 Score=632.80 Aligned_cols=314 Identities=17% Similarity=0.202 Sum_probs=272.4
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhh-cCCeEeCChhhHhchhhcCCccccccCCCC--chHHHHH
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFY-SKNTLTLSPKVVNDIHKRGGTILRTSRGGH--DTNKIVD 74 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~-~~~~~~L~~~~v~~i~~~GGt~LGtsR~~~--~~~~i~~ 74 (381)
|-..|++|||||++|+++.. ++||||++||+||+ ++++++|+|.++++|+++|||+|||||+++ +.+++++
T Consensus 398 IltsGGdapGmNaaIravv~~a~~~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt~LGTsR~~~~~~~~~~~~ 477 (787)
T 3o8o_A 398 IVHVGAPSAALNAATRAATLYCLSHGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEIGTNRSVASEDLGTIAY 477 (787)
T ss_dssp EEEESSCCSSHHHHHHHHHHHHHHHTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCTTCCBCCCGGGCHHHHHH
T ss_pred EEccCCCCHHHHHHHHHHHHHHHHCCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCceeccCCCCchhhHHHHHH
Confidence 45679999999999987643 89999999999999 899999999999999999999999999854 7889999
Q ss_pred HHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcC-CCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhc
Q 016855 75 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 153 (381)
Q Consensus 75 ~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g-~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~ 153 (381)
+|++++||+||+|||||||++|++|++++.++. ++++||||||||||||++||+|||||||+++++++||++++||.|+
T Consensus 478 ~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~~~~eaid~i~~ta~ss 557 (787)
T 3o8o_A 478 YFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASAT 557 (787)
T ss_dssp HHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999998654332 3588999999999999999999999999999999999999999874
Q ss_pred CcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHH---HHHh-----CCceEEEEecCCCchh
Q 016855 154 ENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER---QLKE-----NGHMVIVVAEGAGQEF 225 (381)
Q Consensus 154 ~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~---~~~~-----~~~~iIvVsEG~~~~~ 225 (381)
++||||||||||+|||||+++|||+ +||+|||||+||+++ ++++.|++ +++. +++.+|+++||+...+
T Consensus 558 ~~rv~iVEvMGR~aG~lAl~aglA~-ga~~iliPE~~~~~~---~~~~~i~~~~~~~~~~~g~~~~~~iivvaEg~~~~~ 633 (787)
T 3o8o_A 558 RRRVFVCEVQGGHSGYIASFTGLIT-GAVSVYTPEKKIDLA---SIREDITLLKENFRHDKGENRNGKLLVRNEQASSVY 633 (787)
T ss_dssp SSEEEEEEECCTTCTHHHHHHHHTT-TCSEEECSSSCCCHH---HHHHHHHHHHHHHHHCCSCSSCCEEEEEETTSCSSS
T ss_pred CCcEEEEEeCCCCccHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHHHHHhhcCCCCceEEEEeCCccCCC
Confidence 4689999999999999999999999 899999999999998 78777754 3431 2358999999985321
Q ss_pred hhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 016855 226 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 305 (381)
Q Consensus 226 ~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G 305 (381)
.+++|+++|+++++. .+.+|.++|||+||||.||++||.+|++||.+||+++.+|
T Consensus 634 ---------------------~~~~la~~i~~~~~~----~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~~ 688 (787)
T 3o8o_A 634 ---------------------STQLLADIISEASKG----KFGVRTAIPGHVQQGGVPSSKDRVTASRFAVKCIKFIEQW 688 (787)
T ss_dssp ---------------------CHHHHHHHHHHHHTT----SSEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHhCC----CceeEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 156889999887531 1356778999999999999999999999999999999886
Q ss_pred C---------------------------------CceEEEEeCCccccccHHHHHhhC---CCCCCChHHHHHHHHh
Q 016855 306 F---------------------------------TGFTVGPVNSRHAYIPIARVTETQ---KTVKLTDRMWARLLAS 346 (381)
Q Consensus 306 ~---------------------------------sg~mv~~~~~~~~~vpl~~~~~~~---k~v~~~~~~~~~~l~~ 346 (381)
. +++|+|+++++++++|++++.+.. ++..|+.+||.++...
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~i~~~p~~~~~~~~~d~~~r~~~~~~w~~~~~~ 765 (787)
T 3o8o_A 689 NKKNEASPNTDAKVLRFKFDTHGEKVPTVEHEDDSAAVICVNGSHVSFKPIANLWENETNVELRKGFEVHWAEYNKI 765 (787)
T ss_dssp HHTCC--------------------------CGGGEEEEEEETTEEEEEEHHHHTTSBCTTTTCSBSCCCCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccCCCceEEEEEECCEEEEeeHHHHHhhccchhhCCCcChHHHhHHHH
Confidence 6 689999999999999999987532 4455778899876544
No 15
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=2.2e-76 Score=637.02 Aligned_cols=313 Identities=18% Similarity=0.205 Sum_probs=270.2
Q ss_pred ecccCCCCCcHHHHHhhhcC------CEEEEEccchhhhh-cCCeEeCChhhHhchhhcCCccccccCCCC---chHHHH
Q 016855 4 ISSVICFCYSLPLFVKHLHH------NSLIEFQGGYRGFY-SKNTLTLSPKVVNDIHKRGGTILRTSRGGH---DTNKIV 73 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~~------~~V~G~~~G~~GL~-~~~~~~L~~~~v~~i~~~GGt~LGtsR~~~---~~~~i~ 73 (381)
|-..|++|||||++|+++.. ++||||++||+||+ ++++++|+|.++++|+++|||+|||+|+.+ +.++++
T Consensus 576 IltsGGdapGmNaaIravv~~a~~~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGTiLGTsR~~~~~~~~~~i~ 655 (941)
T 3opy_B 576 IINVGAPAGGMNSAVYSMATYCMSRGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGSEIGTNRTLPNDADIGMIA 655 (941)
T ss_dssp EEEESSCCTTHHHHHHHHHHHHHHHTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCSSCEECCCTTTSCHHHHH
T ss_pred EEecCCCcHHHHHHHHHHHHHHHHCCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCcEeccCCCCcccchHHHHH
Confidence 45679999999999987633 89999999999999 799999999999999999999999999743 688999
Q ss_pred HHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHc-CCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 016855 74 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 152 (381)
Q Consensus 74 ~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~-g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S 152 (381)
++|++++||+||+|||||||++|++|+++..++ .++++|||||||||||+++||+|||||||+++++++||++++||.|
T Consensus 656 ~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~~~i~eaid~i~~tA~s 735 (941)
T 3opy_B 656 YFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAA 735 (941)
T ss_dssp HHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999998764332 1357899999999999999999999999999999999999999987
Q ss_pred cCcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHH---HHHh-----CCceEEEEecCCCch
Q 016855 153 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER---QLKE-----NGHMVIVVAEGAGQE 224 (381)
Q Consensus 153 ~~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~---~~~~-----~~~~iIvVsEG~~~~ 224 (381)
+++||||||||||+|||||+++|||+ +||+|||||.||+++ ++++.|++ +++. +++.+|+++||+...
T Consensus 736 sh~RvfiVEvMGR~aG~LAl~agLA~-GAd~ilIPE~~~~l~---~l~~~i~~l~~~~~~~~g~~~~~~iIvvaEga~~~ 811 (941)
T 3opy_B 736 TRNRVFVVEVQGGNSGYIATHAQLAC-GAQISYVPEEGISLA---QLEMDINSLKESFANDQGKTKSGRLILKSENASKV 811 (941)
T ss_dssp C-CEEEEEEECSTTCCHHHHHHHHHH-TCSEEECTTTCCCHH---HHHHHHHHHHHHHHTCTTSCCCCEEEEEEGGGCSS
T ss_pred cCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEeCCCCCCHH---HHHHHHHHHHHHHhhhhcCCCCceEEEEeCCccCC
Confidence 44689999999999999999999999 899999999999998 77776653 4431 245899999998532
Q ss_pred hhhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 016855 225 FVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMA 304 (381)
Q Consensus 225 ~~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~ 304 (381)
+ .+++|+++|+++++. .+.+|.++|||+||||.||++||.+|++||.+||+++.+
T Consensus 812 ~---------------------~~~~la~~i~~~~~~----g~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Av~~l~~ 866 (941)
T 3opy_B 812 L---------------------TTEVISTIIDDEASG----RFDSKTAIPGHVQQGGIPSPMDRVRASRFAIRAVSFIER 866 (941)
T ss_dssp S---------------------CHHHHHHHHHHHHTT----SSEEEEECCCTTTTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C---------------------CHHHHHHHHHHHhCC----CceeEEccccccccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1 156889999887531 135677899999999999999999999999999999999
Q ss_pred CC--------------------CceEEEEeCCccccccHHHHHhhC---CCCCCChHHHHHHHH
Q 016855 305 GF--------------------TGFTVGPVNSRHAYIPIARVTETQ---KTVKLTDRMWARLLA 345 (381)
Q Consensus 305 G~--------------------sg~mv~~~~~~~~~vpl~~~~~~~---k~v~~~~~~~~~~l~ 345 (381)
|+ +++|||+++++++++||+++.+.. ++..|+.+||.++..
T Consensus 867 g~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~e~~~~~~d~~~r~p~~~~w~~~~~ 930 (941)
T 3opy_B 867 HSDRCQTFKNSISFRQTDEITSTAVVLGIHKSQLRFTPIRQLYDFESDVPRRMRKNIFWSNVRE 930 (941)
T ss_dssp HHHHHHHHHSCSCCCCCHHHHTTEEEEEECC-CEEEEEHHHHHHTSCCTTTTCC-CCSTHHHHH
T ss_pred CCcccccccccccccccccCCCceEEEEEECCEEEEEEHHHHHhhccchhhcCCcchHHHhHHH
Confidence 88 899999999999999999998643 445577889987654
No 16
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=7.5e-75 Score=623.54 Aligned_cols=314 Identities=19% Similarity=0.243 Sum_probs=267.5
Q ss_pred ecccCCCCCcHHHHHhhhc------CCEEEEEccchhhhh-cCCeEeCChhhHhchhhcCCccccccCCC--CchHHHHH
Q 016855 4 ISSVICFCYSLPLFVKHLH------HNSLIEFQGGYRGFY-SKNTLTLSPKVVNDIHKRGGTILRTSRGG--HDTNKIVD 74 (381)
Q Consensus 4 ~~~~~~~~pg~~~vi~gl~------~~~V~G~~~G~~GL~-~~~~~~L~~~~v~~i~~~GGt~LGtsR~~--~~~~~i~~ 74 (381)
|-..|++|||||++|+++. +++||||++||+||+ ++++++|+|.++++|+++|||+|||||+. ++++++++
T Consensus 603 IltsGGdaPGmNAaIravV~~a~~~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGTiLGTsR~~~~~~~~~i~~ 682 (989)
T 3opy_A 603 IIHVGAPTSALNPATRVATLNSLAKGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEIGTNRSLPSDDMGTVAY 682 (989)
T ss_dssp EEEESSCCTTHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSCSSCCBCCCGGGGHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHCCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCcEeccCCCCchhhHHHHHH
Confidence 4567999999999998753 389999999999999 99999999999999999999999999985 47899999
Q ss_pred HHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcC-CCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhc
Q 016855 75 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 153 (381)
Q Consensus 75 ~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g-~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~ 153 (381)
+|++++||+||+|||||||++|++|+++..++. ++|+||||||||||||++||+|||||||+++++++||++++||.|.
T Consensus 683 ~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAvn~~~eaId~i~~tA~ss 762 (989)
T 3opy_A 683 YFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASAS 762 (989)
T ss_dssp HHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHHHHHHHHHHHHHTC-C
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988644332 3578999999999999999999999999999999999999999864
Q ss_pred CcceEEEEecCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHH---HHHHh-----CCceEEEEecCCCchh
Q 016855 154 ENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIE---RQLKE-----NGHMVIVVAEGAGQEF 225 (381)
Q Consensus 154 ~~rv~iVEvMGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~---~~~~~-----~~~~iIvVsEG~~~~~ 225 (381)
++||||||||||+|||||+++|||+ +||+|||||.||+++ ++++.|+ ++++. ++++|||||||+...+
T Consensus 763 h~RvfIVEVMGR~aG~LAl~agLA~-GAd~ilIPE~~f~l~---~l~~~i~~l~~~~~~~~g~~~~~~IIvvaEga~~~~ 838 (989)
T 3opy_A 763 RRRTFVVEVQGGYSGYLASYAGLIT-GALAVYTPENPINLQ---TVQEDIELLTRTYEEDDGKNRSGKIFIHNEKASKVY 838 (989)
T ss_dssp CCSEEEEEECCTTCSHHHHHHHHHH-TCSCEECTTSCCCHH---HHHHHHHHHHHHHTTCC---CCCEEEEEESSSCSSS
T ss_pred CCcEEEEEeCCcchhHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHHHHHhccCCccceEEEEeCCCcCCC
Confidence 4689999999999999999999999 899999999999998 7777766 34431 2468999999985321
Q ss_pred hhccCCccccccccCCccchhhHHHHHHHHHhhhccccceeeeeeEeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 016855 226 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 305 (381)
Q Consensus 226 ~~~~~~~~~~~D~~G~~~l~~i~~~l~~~i~~~~~~~~r~~~~~r~~~~g~~qRgg~P~~~Dr~la~~lG~~Av~~~~~G 305 (381)
.+++|+++|+++.+.. +.+|.++|||+||||+||++||++|++||.+||+++.++
T Consensus 839 ---------------------~~~~la~~i~e~~~~~----~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Ave~l~~~ 893 (989)
T 3opy_A 839 ---------------------TTDLIAAIIGEAGKGR----FESRTAVPGHVQQGKSPSSIDRVNACRLAIKCCNFIEDA 893 (989)
T ss_dssp ---------------------CHHHHHHHHHHTTTTT----SCEEEECCGGGGGCSSCCHHHHHHHHHHHHHHHHHHTCG
T ss_pred ---------------------CHHHHHHHHHHhcCCC----ceeEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 1568999998875311 346778899999999999999999999999999999986
Q ss_pred C---------------------------------------CceEEEEeCCccccccHHHHHhhC---CCCCCChHHHHHH
Q 016855 306 F---------------------------------------TGFTVGPVNSRHAYIPIARVTETQ---KTVKLTDRMWARL 343 (381)
Q Consensus 306 ~---------------------------------------sg~mv~~~~~~~~~vpl~~~~~~~---k~v~~~~~~~~~~ 343 (381)
. +.+++|++++++.+.|+.++.... ++..|+.+||.++
T Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~l~~~~~d~~~r~p~~~~W~~~ 973 (989)
T 3opy_A 894 NFQVKHNANLSADERHLRFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGSEVTFTPVKQLWENETHHKWRKGKNVHWEQL 973 (989)
T ss_dssp GGSCCSBSCCCHHHHHHTEEEETTEEEETTTCSSCCCCGGGEEEEEEETTEEEEEEHHHHHHHSCTTTC----CCCCHHH
T ss_pred ccccccccccccccccccccccccccccccccccccCCCCcEEEEEEECCEEEEEEHHHhhhhccchhhCCCcChHHHhH
Confidence 5 356899999999999999996432 4455778899876
Q ss_pred HHh
Q 016855 344 LAS 346 (381)
Q Consensus 344 l~~ 346 (381)
...
T Consensus 974 ~~~ 976 (989)
T 3opy_A 974 NIV 976 (989)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 17
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=93.89 E-value=0.025 Score=53.24 Aligned_cols=46 Identities=30% Similarity=0.362 Sum_probs=30.8
Q ss_pred hHHHHHHHHHcC-------CcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecc
Q 016855 69 TNKIVDNIEDRG-------INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 117 (381)
Q Consensus 69 ~~~i~~~l~~~~-------Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPk 117 (381)
.+++.+.|++++ .|.+|++|||||+..|.... .....+++++|||-
T Consensus 17 ~~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~---~~~~~~~PilGIn~ 69 (272)
T 2i2c_A 17 RLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQY---EERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHT---GGGTTTCEEEEEES
T ss_pred HHHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHH---hhcCCCCCEEEEeC
Confidence 345556666665 59999999999988765432 11101477999984
No 18
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=92.77 E-value=0.031 Score=53.14 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=45.1
Q ss_pred hHHHHHHHHHcC---------------CcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChH
Q 016855 69 TNKIVDNIEDRG---------------INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 133 (381)
Q Consensus 69 ~~~i~~~l~~~~---------------Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFd 133 (381)
.+++.+.|++++ .|.+|++|||||+-.|.+... +. ++|+||.. -++||-
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~----------G~lGFL 105 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT----------GRVGLL 105 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC----------SSSCTT
T ss_pred HHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC----------CCCccc
Confidence 677778888774 578899999999965543321 23 78999984 288888
Q ss_pred HHH--HHHHHHHHHHHHhh
Q 016855 134 TAV--EEAQRAINAAHVEV 150 (381)
Q Consensus 134 TA~--~~~~~ai~~l~~tA 150 (381)
|.. +.+.++++++..+.
T Consensus 106 t~~~~~~~~~~l~~l~~~~ 124 (278)
T 1z0s_A 106 THASPENFEVELKKAVEKF 124 (278)
T ss_dssp CCBBTTBCHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHHHhhC
Confidence 765 44455666655433
No 19
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=92.28 E-value=0.042 Score=51.92 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=25.2
Q ss_pred HcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeec
Q 016855 78 DRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 116 (381)
Q Consensus 78 ~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIP 116 (381)
..+.|.+|++|||||+..|.... . +.+++++|||
T Consensus 61 ~~~~D~vi~~GGDGT~l~a~~~~---~--~~~~P~lGI~ 94 (292)
T 2an1_A 61 GQQADLAVVVGGDGNMLGAARTL---A--RYDINVIGIN 94 (292)
T ss_dssp HHHCSEEEECSCHHHHHHHHHHH---T--TSSCEEEEBC
T ss_pred ccCCCEEEEEcCcHHHHHHHHHh---h--cCCCCEEEEE
Confidence 34689999999999988765432 1 2246799998
No 20
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=87.56 E-value=4.4 Score=36.89 Aligned_cols=129 Identities=9% Similarity=0.076 Sum_probs=67.6
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC--CCCCChHHHHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINA 145 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t--D~tiGFdTA~~~~~~ai~~ 145 (381)
...+.++.+...++|++|+.+.+.+... ...+.+.+.|++ ||. +|++++.. ..++++|-. .....+.+.
T Consensus 49 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~~iP--vV~----~~~~~~~~~~~~~V~~d~~-~~g~~~~~~ 119 (305)
T 3g1w_A 49 EQITVLEQAIAKNPAGIAISAIDPVELT--DTINKAVDAGIP--IVL----FDSGAPDSHAHSFLGTNNY-NAGMNAAYK 119 (305)
T ss_dssp HHHHHHHHHHHHCCSEEEECCSSTTTTH--HHHHHHHHTTCC--EEE----ESSCCTTSCCSCEEECCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCHHHHH--HHHHHHHHCCCc--EEE----ECCCCCCCceeEEECcCHH-HHHHHHHHH
Confidence 3456788888999999999987765211 122334445654 664 45555543 346666642 333444444
Q ss_pred HHHhhhhcCcceEEEEecC------CCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhC
Q 016855 146 AHVEVESVENGVGIVKLMG------RYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 210 (381)
Q Consensus 146 l~~tA~S~~~rv~iVEvMG------R~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~ 210 (381)
+......| +++.++--.+ |..||........- ..+...+.+..++.+ .-.+.+.+.++..
T Consensus 120 l~~~~~g~-~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 185 (305)
T 3g1w_A 120 MAELLDGE-GEVAVITLPNQLNHQERTTGFKETLEAEFP-AIEVIAVEDGRGDSL---HSRRVAHQLLEDY 185 (305)
T ss_dssp HHHHTTTC-EEEEEEECTTCHHHHHHHHHHHHHHHHHCT-TEEEEEEEECTTCHH---HHHHHHHHHHHHC
T ss_pred HHHHhCCC-cEEEEEeCCCcccHHHHHHHHHHHHHhhCC-CCEEEEEecCCCCHH---HHHHHHHHHHHhC
Confidence 44443455 4677776333 22344433222111 233444433444433 4455566666654
No 21
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=86.73 E-value=0.14 Score=47.60 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeec
Q 016855 79 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 116 (381)
Q Consensus 79 ~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIP 116 (381)
.+.|.+|++|||||+-.+.... . + +++++||+
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~---~--~-~~PilGIn 71 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKA---A--D-GTPMVGFK 71 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTB---C--T-TCEEEEEE
T ss_pred CCCCEEEEEeCcHHHHHHHHHh---C--C-CCCEEEEE
Confidence 4789999999999987654332 1 2 57799997
No 22
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=85.06 E-value=7.8 Score=36.20 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=28.4
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
..+.++.|...++|++|+.+-+.+-.. .+.+.+.+++ +|.+
T Consensus 113 ~~~~i~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~iP--vV~i 153 (344)
T 3kjx_A 113 EEKVLYEMLSWRPSGVIIAGLEHSEAA----RAMLDAAGIP--VVEI 153 (344)
T ss_dssp HHHHHHHHHTTCCSEEEEECSCCCHHH----HHHHHHCSSC--EEEE
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCHHH----HHHHHhCCCC--EEEE
Confidence 456788899999999999987765432 2344455655 6655
No 23
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=82.93 E-value=0.83 Score=43.81 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=38.9
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccC
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 125 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~ 125 (381)
+..++++.+...+.|.+|++|||||+..+..- +.+.+.++++..||.==-||+.-
T Consensus 68 ~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~---l~~~~~~~pl~iIP~GT~N~lAr 122 (337)
T 2qv7_A 68 DATLEAERAMHENYDVLIAAGGDGTLNEVVNG---IAEKPNRPKLGVIPMGTVNDFGR 122 (337)
T ss_dssp HHHHHHHHHTTTTCSEEEEEECHHHHHHHHHH---HTTCSSCCEEEEEECSSCCHHHH
T ss_pred hHHHHHHHHhhcCCCEEEEEcCchHHHHHHHH---HHhCCCCCcEEEecCCcHhHHHH
Confidence 44555555666789999999999998775432 21224467899999877788753
No 24
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=82.03 E-value=1.3 Score=42.39 Aligned_cols=54 Identities=26% Similarity=0.317 Sum_probs=36.8
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHc--CCCceEeeeccccccCcc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GLQVAVAGIPKTIDNDIA 124 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~--g~~i~vIgIPkTIDNDi~ 124 (381)
+...+++.+...+.|.+|++|||||+..+..- +.+. +.++++..||.==-||+.
T Consensus 70 ~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~---l~~~~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 70 DAARYVEEARKFGVATVIAGGGDGTINEVSTA---LIQCEGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHH---HHHCCSSCCCEEEEEECSSSCHHH
T ss_pred hHHHHHHHHHhcCCCEEEEEccchHHHHHHHH---HhhcccCCCCeEEEecCcCHHHHH
Confidence 44455555666789999999999998775432 2222 345678889876667765
No 25
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=80.85 E-value=0.72 Score=43.91 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=23.5
Q ss_pred HcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeec
Q 016855 78 DRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 116 (381)
Q Consensus 78 ~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIP 116 (381)
..+.|.+|++|||||+..|..... ..+ ++++|||
T Consensus 73 ~~~~d~vi~~GGDGT~l~a~~~~~---~~~--~pvlgi~ 106 (307)
T 1u0t_A 73 ADGCELVLVLGGDGTFLRAAELAR---NAS--IPVLGVN 106 (307)
T ss_dssp ---CCCEEEEECHHHHHHHHHHHH---HHT--CCEEEEE
T ss_pred ccCCCEEEEEeCCHHHHHHHHHhc---cCC--CCEEEEe
Confidence 457899999999999877654432 223 5689997
No 26
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=80.41 E-value=2.4 Score=41.17 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=46.7
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHH
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 135 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA 135 (381)
+..+++.+.+++++.|.+|-|||-=.++.|..++- + ++ +++|.||-| ++||..++--+.
T Consensus 73 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~-~--~~--~p~i~IPTT-----a~tgSevt~~av 131 (370)
T 1jq5_A 73 NEVERIANIARKAEAAIVIGVGGGKTLDTAKAVAD-E--LD--AYIVIVPTA-----ASTDAPTSALSV 131 (370)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHH-H--HT--CEEEEEESS-----CCSSCTTCSEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHH-h--cC--CCEEEeccc-----cCCCcccCCeEE
Confidence 35788999999999999999999888988887773 2 35 669999999 777766654433
No 27
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=79.91 E-value=18 Score=32.69 Aligned_cols=80 Identities=8% Similarity=0.035 Sum_probs=45.3
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC-CCCChHHHHHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAA 146 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD-~tiGFdTA~~~~~~ai~~l 146 (381)
+..+.++.|...++|++|+.+.+.+-.. + +.+.+ + ++||. +|++++... .++++|- ...+..+.+.+
T Consensus 54 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~-~~~~~-~--iPvV~----i~~~~~~~~~~~V~~D~-~~~~~~a~~~L 121 (289)
T 3k9c_A 54 AEKVAVQALMRERCEAAILLGTRFDTDE---L-GALAD-R--VPALV----VARASGLPGVGAVRGDD-VAGITLAVDHL 121 (289)
T ss_dssp CHHHHHHHHTTTTEEEEEEETCCCCHHH---H-HHHHT-T--SCEEE----ESSCCSSTTSEEEEECH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCHHH---H-HHHHc-C--CCEEE----EcCCCCCCCCCEEEeCh-HHHHHHHHHHH
Confidence 3667788899999999999998876522 2 33333 5 45664 455554222 2455542 22223333333
Q ss_pred HHhhhhcCcceEEEEe
Q 016855 147 HVEVESVENGVGIVKL 162 (381)
Q Consensus 147 ~~tA~S~~~rv~iVEv 162 (381)
.. ..| +++.++--
T Consensus 122 ~~--~G~-~~I~~i~~ 134 (289)
T 3k9c_A 122 TE--LGH-RNIAHIDG 134 (289)
T ss_dssp HH--TTC-CSEEEECC
T ss_pred HH--CCC-CcEEEEeC
Confidence 32 366 46777643
No 28
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=79.73 E-value=0.92 Score=44.61 Aligned_cols=55 Identities=27% Similarity=0.360 Sum_probs=37.2
Q ss_pred cCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHH--HHHHHHHHHHHH
Q 016855 79 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 148 (381)
Q Consensus 79 ~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~--~~~~~ai~~l~~ 148 (381)
.++|.+|++|||||+-.|..+.. +..++|+||=- -++||-|-. +.+.++++++..
T Consensus 107 ~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN~----------G~LGFLt~~~~~~~~~~l~~vl~ 163 (365)
T 3pfn_A 107 NQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFHL----------GSLGFLTPFSFENFQSQVTQVIE 163 (365)
T ss_dssp TTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEES----------SSCTTTCCEESTTHHHHHHHHHH
T ss_pred cCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEcC----------CCCccceeecHHHHHHHHHHHHc
Confidence 36899999999999877765532 33467899842 378887653 344556665543
No 29
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=78.75 E-value=4.3 Score=36.74 Aligned_cols=79 Identities=8% Similarity=0.185 Sum_probs=43.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC-CCCChHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD-~tiGFdTA~~~~~~ai~~l~ 147 (381)
..++++.|...++|++|+.+-+...... +.+.+.+ +++|. +|++.+..+ .++++|-. ..+..+.+.+.
T Consensus 53 ~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~~~~~~--iPvV~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~ 121 (291)
T 3egc_A 53 EREAVGQFFERRVDGLILAPSEGEHDYL----RTELPKT--FPIVA----VNRELRIPGCGAVLSENV-RGARTAVEYLI 121 (291)
T ss_dssp HHHHHHHHHHTTCSEEEECCCSSCCHHH----HHSSCTT--SCEEE----ESSCCCCTTCEEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCChHHH----HHhhccC--CCEEE----EecccCCCCCCEEEECcH-HHHHHHHHHHH
Confidence 4567889999999999999987643322 3333345 45674 455554322 25555432 22233333333
Q ss_pred HhhhhcCcceEEEE
Q 016855 148 VEVESVENGVGIVK 161 (381)
Q Consensus 148 ~tA~S~~~rv~iVE 161 (381)
. ..| +++.++-
T Consensus 122 ~--~G~-~~i~~i~ 132 (291)
T 3egc_A 122 A--RGH-TRIGAIV 132 (291)
T ss_dssp H--TTC-CSEEEEC
T ss_pred H--cCC-CEEEEEe
Confidence 2 255 4566653
No 30
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=77.84 E-value=29 Score=32.04 Aligned_cols=79 Identities=10% Similarity=0.063 Sum_probs=43.1
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 148 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~ 148 (381)
..+.++.|...++|++|+.+-+.+-.. .+.+.+.+++ +|.+ |+.......++++|-. ..+..+.+.+..
T Consensus 107 ~~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~iP--vV~~----~~~~~~~~~~V~~D~~-~~~~~a~~~L~~ 175 (339)
T 3h5o_A 107 ELQLLRAYLQHRPDGVLITGLSHAEPF----ERILSQHALP--VVYM----MDLADDGRCCVGFSQE-DAGAAITRHLLS 175 (339)
T ss_dssp HHHHHHHHHTTCCSEEEEECSCCCTTH----HHHHHHTTCC--EEEE----ESCCSSSCCEEECCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCCHHH----HHHHhcCCCC--EEEE----eecCCCCCeEEEECHH-HHHHHHHHHHHH
Confidence 456788889999999999997765432 2333445654 6655 2211111125655532 222333333332
Q ss_pred hhhhcCcceEEEE
Q 016855 149 EVESVENGVGIVK 161 (381)
Q Consensus 149 tA~S~~~rv~iVE 161 (381)
..| +++.++-
T Consensus 176 --~G~-~~I~~i~ 185 (339)
T 3h5o_A 176 --RGK-RRIGFLG 185 (339)
T ss_dssp --TTC-CSEEEEE
T ss_pred --CCC-CeEEEEe
Confidence 266 4677774
No 31
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=77.65 E-value=11 Score=34.16 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=46.9
Q ss_pred CCchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC-CCCChHHHHHHHHHHHH
Q 016855 66 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAIN 144 (381)
Q Consensus 66 ~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD-~tiGFdTA~~~~~~ai~ 144 (381)
.+....+.+.+...++|++|+.+.+.+-... +.+.+.+++ ||. +|++.+... .++++|- ...+..+.+
T Consensus 51 ~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~iP--vV~----~~~~~~~~~~~~V~~D~-~~~~~~a~~ 119 (294)
T 3qk7_A 51 GEKYQSLIHLVETRRVDALIVAHTQPEDFRL----QYLQKQNFP--FLA----LGRSHLPKPYAWFDFDN-HAGASLAVK 119 (294)
T ss_dssp TCCCHHHHHHHHHTCCSEEEECSCCSSCHHH----HHHHHTTCC--EEE----ESCCCCSSCCEEEEECH-HHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHhCCCC--EEE----ECCCCCCCCCCEEEcCh-HHHHHHHHH
Confidence 3456778899999999999999987655322 334455654 664 455443222 2455542 122233333
Q ss_pred HHHHhhhhcCcceEEEEe
Q 016855 145 AAHVEVESVENGVGIVKL 162 (381)
Q Consensus 145 ~l~~tA~S~~~rv~iVEv 162 (381)
.+.. ..| +++.++--
T Consensus 120 ~L~~--~G~-~~I~~i~~ 134 (294)
T 3qk7_A 120 RLLE--LGH-QRIAFVST 134 (294)
T ss_dssp HHHH--TTC-CCEEEEEE
T ss_pred HHHH--CCC-ceEEEEeC
Confidence 3332 366 46777644
No 32
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=77.16 E-value=2.8 Score=41.29 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=45.0
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChH
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 133 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFd 133 (381)
+..+++++.+++.+.|.+|-|||--.++.|..++-. ++ +++|.||-| ++||..++--
T Consensus 93 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~---~~--~p~i~IPTT-----agtgSevt~~ 149 (387)
T 3uhj_A 93 SEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAID---TG--ARIVIAPTI-----ASTDAPCSAI 149 (387)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH---TT--CEEEECCSS-----CCCSTTTSSE
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEecCc-----ccCCcccCCe
Confidence 357889999999999999999998889888887732 24 679999999 6666544433
No 33
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=76.29 E-value=50 Score=30.72 Aligned_cols=77 Identities=9% Similarity=0.225 Sum_probs=41.9
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccC-C-CCCCChHH--HHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV-I-DKSFGFDT--AVEEAQRAIN 144 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~-t-D~tiGFdT--A~~~~~~ai~ 144 (381)
....++.|...++|++|+.+.+.+-. ..+.+.+.++ ++|.+ |++.+. . -.++++|- +...+++.+
T Consensus 111 ~~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~~i--PvV~i----~~~~~~~~~~~~V~~D~~~~~~~a~~~L- 179 (348)
T 3bil_A 111 MSGSLEFLTSHGVDGIICVPNEECAN----QLEDLQKQGM--PVVLV----DRELPGDSTIPTATSNPQPGIAAAVELL- 179 (348)
T ss_dssp HHHHHHHHHHTTCSCEEECCCGGGHH----HHHHHHHC-C--CEEEE----SSCCSCC-CCCEEEEECHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhCCC--CEEEE----cccCCCCCCCCEEEeChHHHHHHHHHHH-
Confidence 34578888899999999998765522 2234444564 46655 333322 1 12455542 333344333
Q ss_pred HHHHhhhhcCcceEEEE
Q 016855 145 AAHVEVESVENGVGIVK 161 (381)
Q Consensus 145 ~l~~tA~S~~~rv~iVE 161 (381)
.. ..| +++.++-
T Consensus 180 --~~--~G~-~~I~~i~ 191 (348)
T 3bil_A 180 --AH--NNA-LPIGYLS 191 (348)
T ss_dssp --HH--TTC-CSEEEEC
T ss_pred --HH--CCC-CeEEEEe
Confidence 32 256 4677764
No 34
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=75.81 E-value=13 Score=34.37 Aligned_cols=79 Identities=8% Similarity=0.059 Sum_probs=44.0
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC-CCCChHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD-~tiGFdTA~~~~~~ai~~l~ 147 (381)
..+.++.|...++|++|+.+.+.+... +.+.+.+.++ ++|. +|.+.+..+ .++++|-. ..+..+.+.+.
T Consensus 108 ~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~i--PvV~----~~~~~~~~~~~~V~~D~~-~~~~~a~~~L~ 177 (338)
T 3dbi_A 108 ERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHSQ--PIMV----LNRRLRKNSSHSVWCDHK-QTSFNAVAELI 177 (338)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCSS--CEEE----ESSCCSSSGGGEECBCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCCC--CEEE----EcCCCCCCCCCEEEEChH-HHHHHHHHHHH
Confidence 345788999999999999988766432 3333344454 4664 455554322 34555521 22233333333
Q ss_pred HhhhhcCcceEEE
Q 016855 148 VEVESVENGVGIV 160 (381)
Q Consensus 148 ~tA~S~~~rv~iV 160 (381)
. ..| +++.++
T Consensus 178 ~--~G~-~~I~~i 187 (338)
T 3dbi_A 178 N--AGH-QEIAFL 187 (338)
T ss_dssp H--TTC-CSEEEE
T ss_pred H--CCC-CEEEEE
Confidence 2 356 467666
No 35
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=75.71 E-value=0.72 Score=45.74 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=35.5
Q ss_pred cCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCc-eEeeeccccccCccCCCCCCChHHHHH--HHHHHHHHHH
Q 016855 79 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQV-AVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAH 147 (381)
Q Consensus 79 ~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i-~vIgIPkTIDNDi~~tD~tiGFdTA~~--~~~~ai~~l~ 147 (381)
.+.|.+|++|||||+-.|..... +.++ +|+||+- -+.||-|.++ ...++++++.
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN~----------G~lGFLt~~~~~~~~~al~~il 169 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFAL----------GTLGFLSPFDFKEHKKVFQEVI 169 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEEC----------SSCCSSCCEEGGGHHHHHHHHH
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEEC----------CCcccCCcCChHHHHHHHHHHh
Confidence 45899999999999987754431 2235 6999962 2667776543 3445555544
No 36
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=73.19 E-value=10 Score=34.07 Aligned_cols=77 Identities=10% Similarity=0.103 Sum_probs=45.1
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC--CCCCChHH--HHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT--AVEEAQRAIN 144 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t--D~tiGFdT--A~~~~~~ai~ 144 (381)
..++.+.+...++|++|+.+.+.+-.. .+.+.+.+++ ||. +|++.+.. -.++++|- +...+++.+
T Consensus 58 ~~~~~~~~~~~~vdgiIi~~~~~~~~~----~~~l~~~~iP--vV~----~~~~~~~~~~~~~V~~D~~~~g~~a~~~L- 126 (292)
T 3k4h_A 58 FNGVVKMVQGRQIGGIILLYSRENDRI----IQYLHEQNFP--FVL----IGKPYDRKDEITYVDNDNYTAAREVAEYL- 126 (292)
T ss_dssp HHHHHHHHHTTCCCEEEESCCBTTCHH----HHHHHHTTCC--EEE----ESCCSSCTTTSCEEECCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHHCCCC--EEE----ECCCCCCCCCCCEEEECcHHHHHHHHHHH-
Confidence 456788899999999999988765432 2334455654 664 45555443 23555553 333444333
Q ss_pred HHHHhhhhcCcceEEEE
Q 016855 145 AAHVEVESVENGVGIVK 161 (381)
Q Consensus 145 ~l~~tA~S~~~rv~iVE 161 (381)
.. ..| +++.++-
T Consensus 127 --~~--~G~-~~i~~i~ 138 (292)
T 3k4h_A 127 --IS--LGH-KQIAFIG 138 (292)
T ss_dssp --HH--TTC-CCEEEEE
T ss_pred --HH--CCC-ceEEEEe
Confidence 32 355 4677664
No 37
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=72.59 E-value=23 Score=31.72 Aligned_cols=126 Identities=11% Similarity=0.017 Sum_probs=66.0
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC--CCCCChHH--HHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT--AVEEAQRAIN 144 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t--D~tiGFdT--A~~~~~~ai~ 144 (381)
..+.++.|...++|++|+.+-+..... .+.+.+.+.|++ ||. +|++++.. ..++++|- +...+++
T Consensus 58 ~~~~i~~l~~~~vdgiii~~~~~~~~~--~~~~~~~~~~iP--vV~----~~~~~~~~~~~~~V~~D~~~~g~~a~~--- 126 (304)
T 3gbv_A 58 FVATSQAVIEEQPDGVMFAPTVPQYTK--GFTDALNELGIP--YIY----IDSQIKDAPPLAFFGQNSHQSGYFAAR--- 126 (304)
T ss_dssp HHHHHHHHHTTCCSEEEECCSSGGGTH--HHHHHHHHHTCC--EEE----ESSCCTTSCCSEEEECCHHHHHHHHHH---
T ss_pred HHHHHHHHHhcCCCEEEECCCChHHHH--HHHHHHHHCCCe--EEE----EeCCCCCCCceEEEecChHHHHHHHHH---
Confidence 356688899999999999988764211 122334445654 664 45555442 23555553 3333333
Q ss_pred HHHHhhhhcCcceEEEEe-----------cCCCccHHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhC
Q 016855 145 AAHVEVESVENGVGIVKL-----------MGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 210 (381)
Q Consensus 145 ~l~~tA~S~~~rv~iVEv-----------MGR~aG~LAl~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~ 210 (381)
.+...... ++++.++-. .-|..||........- ..+...+.+..++.+ .-.+.+++.+++.
T Consensus 127 ~l~~~g~~-~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 198 (304)
T 3gbv_A 127 MLMLLAVN-DREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHP-ACNILELNLHADLNI---EDSRMLDDFFREH 198 (304)
T ss_dssp HHHHHSTT-CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCT-TSEEEEEEEESSCSS---CHHHHHHHHHHHC
T ss_pred HHHHHhCC-CCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCC-CcEEEEeeecCCCHH---HHHHHHHHHHHhC
Confidence 33332221 145777642 2355566655443211 234444444455555 3455666666654
No 38
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=71.43 E-value=39 Score=29.60 Aligned_cols=81 Identities=12% Similarity=0.223 Sum_probs=44.6
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC-CCCChHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD-~tiGFdTA~~~~~~ai~~l~ 147 (381)
..+.++.+...++|++|+.+.+.... ...+.+.+.|++ +| ++|++++..+ .++++|-. ..+..+.+.+.
T Consensus 47 ~~~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~~~~~~iP--vV----~~~~~~~~~~~~~V~~d~~-~~~~~a~~~L~ 116 (272)
T 3o74_A 47 ERQLQQLFRARRCDALFVASCLPPED---DSYRELQDKGLP--VI----AIDRRLDPAHFCSVISDDR-DASRQLAASLL 116 (272)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCCSSC---CHHHHHHHTTCC--EE----EESSCCCTTTCEEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCccccH---HHHHHHHHcCCC--EE----EEccCCCccccCEEEEchH-HHHHHHHHHHH
Confidence 45678889999999999998873311 122334455654 66 3466554432 24555422 22233334333
Q ss_pred HhhhhcCcceEEEEe
Q 016855 148 VEVESVENGVGIVKL 162 (381)
Q Consensus 148 ~tA~S~~~rv~iVEv 162 (381)
. ..| +++.++--
T Consensus 117 ~--~G~-~~i~~i~~ 128 (272)
T 3o74_A 117 S--SAP-RSIALIGA 128 (272)
T ss_dssp T--TCC-SEEEEEEE
T ss_pred H--CCC-cEEEEEec
Confidence 2 355 46777643
No 39
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=69.16 E-value=4.8 Score=39.26 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=41.3
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccC
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 122 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDND 122 (381)
..+++++.+++.+.|.+|-|||--+++.|..++-. .+ +++|.||-|- .|
T Consensus 76 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~P~i~IPTTa-tg 124 (364)
T 3iv7_A 76 VAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---TA--LPIVAIPTTY-AG 124 (364)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS-SC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEcCCc-cc
Confidence 47888999999999999999998889988877653 35 5699999998 64
No 40
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=67.71 E-value=6.4 Score=38.10 Aligned_cols=49 Identities=24% Similarity=0.226 Sum_probs=41.1
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccC
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 122 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDND 122 (381)
..+++++.+++.+.|.+|-|||--.++.|..++-. ++ +++|.||-|- .|
T Consensus 75 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~p~i~IPTTa-tg 123 (353)
T 3hl0_A 75 VTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---TD--AAQIVIPTTY-AG 123 (353)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---HC--CEEEEEECSS-CC
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc-hh
Confidence 47888999999999999999998889888877653 34 6699999997 53
No 41
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=67.29 E-value=5.3 Score=38.79 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=39.6
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
..+++++.+++.+.|.+|-|||--+++.|..++-. ++ +++|.||-|-
T Consensus 77 ~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~~--~p~i~IPTT~ 123 (358)
T 3jzd_A 77 SARDATARAREAGADCAVAVGGGSTTGLGKAIALE---TG--MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS
T ss_pred HHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc
Confidence 47788999999999999999998889888877653 35 5699999985
No 42
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=66.41 E-value=19 Score=32.19 Aligned_cols=83 Identities=5% Similarity=-0.006 Sum_probs=48.4
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~ 147 (381)
.....++.+...++|++|+.+.+.+... ...+.+.+.|++ ||.+ |++.+....++++|-. .....+.+.+.
T Consensus 49 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~~iP--vV~~----~~~~~~~~~~V~~D~~-~~g~~~~~~l~ 119 (291)
T 3l49_A 49 TQVSQIQTLIAQKPDAIIEQLGNLDVLN--PWLQKINDAGIP--LFTV----DTATPHAINNTTSNNY-SIGAELALQMV 119 (291)
T ss_dssp HHHHHHHHHHHHCCSEEEEESSCHHHHH--HHHHHHHHTTCC--EEEE----SCCCTTCSEEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChhhhH--HHHHHHHHCCCc--EEEe----cCCCCCcCceEecChH-HHHHHHHHHHH
Confidence 3456788899999999999988754322 233445556654 6655 4444333345666532 23334444444
Q ss_pred HhhhhcCcceEEE
Q 016855 148 VEVESVENGVGIV 160 (381)
Q Consensus 148 ~tA~S~~~rv~iV 160 (381)
.....| +++.++
T Consensus 120 ~~~~g~-~~i~~i 131 (291)
T 3l49_A 120 ADLGGK-GNVLVF 131 (291)
T ss_dssp HHHTTC-EEEEEE
T ss_pred HHcCCC-ceEEEE
Confidence 444566 467776
No 43
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=63.76 E-value=7.3 Score=38.03 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=42.9
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHc-------------CCCceEeeeccccccCc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDNDI 123 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~-------------g~~i~vIgIPkTIDNDi 123 (381)
..+++++.+++.+.|.+|-|||--.++.|..++-.+... .-.+++|.||-|--.|-
T Consensus 76 ~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgS 144 (383)
T 3ox4_A 76 AVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTAS 144 (383)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCT
T ss_pred HHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchh
Confidence 578899999999999999999988898888776544210 01367999999975433
No 44
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=63.55 E-value=32 Score=30.82 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=43.6
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC-CCCChHHHHHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAA 146 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD-~tiGFdTA~~~~~~ai~~l 146 (381)
....+.+.+...++|++|+.+.+.+-... +.+.+.+++ || ++|++.+..+ .++++|-. ..+..+.+.+
T Consensus 54 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~~iP--vV----~i~~~~~~~~~~~V~~D~~-~~g~~a~~~L 122 (288)
T 3gv0_A 54 SMVPIRYILETGSADGVIISKIEPNDPRV----RFMTERNMP--FV----THGRSDMGIEHAFHDFDNE-AYAYEAVERL 122 (288)
T ss_dssp TTHHHHHHHHHTCCSEEEEESCCTTCHHH----HHHHHTTCC--EE----EESCCCSSCCCEEEEECHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccEEEEecCCCCcHHH----HHHhhCCCC--EE----EECCcCCCCCCcEEEeCcH-HHHHHHHHHH
Confidence 34567778889999999999876554332 334445654 66 3555554322 35555531 2223333333
Q ss_pred HHhhhhcCcceEEE
Q 016855 147 HVEVESVENGVGIV 160 (381)
Q Consensus 147 ~~tA~S~~~rv~iV 160 (381)
.. ..| +++.++
T Consensus 123 ~~--~G~-~~I~~i 133 (288)
T 3gv0_A 123 AQ--CGR-KRIAVI 133 (288)
T ss_dssp HH--TTC-CEEEEE
T ss_pred HH--CCC-CeEEEE
Confidence 32 255 466665
No 45
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=62.96 E-value=18 Score=32.93 Aligned_cols=80 Identities=11% Similarity=0.136 Sum_probs=45.1
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~ 147 (381)
...++++.|...++|++|+.+.+.+... ..+.+.+ + ++||.+ |++.+..-.++++|- ...+..+.+.+.
T Consensus 59 ~~~~~~~~l~~~~vdgiI~~~~~~~~~~---~~~~l~~-~--iPvV~i----~~~~~~~~~~V~~D~-~~~g~~a~~~L~ 127 (303)
T 3kke_A 59 GTQQLSRLVSEGRVDGVLLQRREDFDDD---MLAAVLE-G--VPAVTI----NSRVPGRVGSVILDD-QKGGGIATEHLI 127 (303)
T ss_dssp HHHHHHHHHHSCSSSEEEECCCTTCCHH---HHHHHHT-T--SCEEEE----SCCCTTCCCEEEECH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCcHH---HHHHHhC-C--CCEEEE----CCcCCCCCCEEEECc-HHHHHHHHHHHH
Confidence 3556889999999999999998776430 2233444 5 457754 444443123555552 122233333333
Q ss_pred HhhhhcCcceEEEE
Q 016855 148 VEVESVENGVGIVK 161 (381)
Q Consensus 148 ~tA~S~~~rv~iVE 161 (381)
. ..| +++.++-
T Consensus 128 ~--~G~-~~I~~i~ 138 (303)
T 3kke_A 128 T--LGH-SRIAFIS 138 (303)
T ss_dssp H--TTC-CSEEEEE
T ss_pred H--CCC-CeEEEEe
Confidence 2 366 4676664
No 46
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=62.95 E-value=5.1 Score=39.42 Aligned_cols=52 Identities=10% Similarity=0.177 Sum_probs=40.5
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcC----------------CCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG----------------LQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g----------------~~i~vIgIPkTI 119 (381)
..+++++.+++.+.|.+|-|||--.++.|..++-.....+ -.+++|.||-|-
T Consensus 94 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTa 161 (408)
T 1oj7_A 94 TLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLP 161 (408)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCC
Confidence 4678899999999999999999888998887765322101 236799999985
No 47
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=61.78 E-value=8.4 Score=37.43 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=41.7
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcC---------------CCceEeeeccccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG---------------LQVAVAGIPKTID 120 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g---------------~~i~vIgIPkTID 120 (381)
..+++++.++++++|.+|-|||-=.++.|..++-.+...+ -.+++|.||-|--
T Consensus 76 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~g 143 (386)
T 1rrm_A 76 VVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAG 143 (386)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSS
T ss_pred HHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 5788999999999999999999888988887765442111 1467999999873
No 48
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=60.25 E-value=33 Score=31.96 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=44.1
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCcc-CCCCCCChHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA-VIDKSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~-~tD~tiGFdTA~~~~~~ai~~l~ 147 (381)
..+.++.|...++|++|+.+.+.+-.. .+.+.+.+++ +|.+ |+... ....++++|- ...+..+.+.+.
T Consensus 115 ~~~~~~~l~~~~vdGiI~~~~~~~~~~----~~~l~~~~iP--vV~i----~~~~~~~~~~~V~~D~-~~~~~~a~~~L~ 183 (355)
T 3e3m_A 115 EEQLVETMLRRRPEAMVLSYDGHTEQT----IRLLQRASIP--IVEI----WEKPAHPIGHTVGFSN-ERAAYDMTNALL 183 (355)
T ss_dssp HHHHHHHHHHTCCSEEEEECSCCCHHH----HHHHHHCCSC--EEEE----SSCCSSCSSEEEECCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCHHH----HHHHHhCCCC--EEEE----CCccCCCCCCEEEeCh-HHHHHHHHHHHH
Confidence 456788899999999999988776432 2334455654 6655 22211 1123555543 122233333333
Q ss_pred HhhhhcCcceEEEEe
Q 016855 148 VEVESVENGVGIVKL 162 (381)
Q Consensus 148 ~tA~S~~~rv~iVEv 162 (381)
. ..| +++.++--
T Consensus 184 ~--~G~-r~I~~i~~ 195 (355)
T 3e3m_A 184 A--RGF-RKIVFLGE 195 (355)
T ss_dssp H--TTC-CSEEEEEE
T ss_pred H--CCC-CeEEEEcc
Confidence 2 366 46777653
No 49
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=59.49 E-value=7.5 Score=37.73 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=48.7
Q ss_pred chHHHHHHHHHcCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHH
Q 016855 68 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 137 (381)
Q Consensus 68 ~~~~i~~~l~~~~I---d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~ 137 (381)
..+++.+.+.++++ |.+|-+||--.++.|..++-.+ .+| +++|.||-|. +++||.++|--|+++
T Consensus 79 ~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl---la~tdS~v~~kt~I~ 145 (368)
T 2gru_A 79 TVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMM-FRG--IALIHVPTTF---LAASDSVLSIKQAVN 145 (368)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH---HHHHTTTSSCEEEEE
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCch---HhhcCCCcCCeEEEE
Confidence 36788899999994 9999999988888777665321 234 6799999998 677777777766654
No 50
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=58.58 E-value=6.8 Score=38.66 Aligned_cols=62 Identities=24% Similarity=0.313 Sum_probs=46.1
Q ss_pred chHHHHHHHHHcCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHH
Q 016855 68 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 135 (381)
Q Consensus 68 ~~~~i~~~l~~~~I---d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA 135 (381)
..+++.+.+.++++ |.+|.+||--.++.|..++-.. .+| +++|.||-|. +..+|.++|--|+
T Consensus 108 ~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~-~rg--ip~I~IPTTl---la~vDssvggkt~ 172 (390)
T 3okf_A 108 TFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACY-QRG--VDFIQIPTTL---LSQVDSSVGGKTA 172 (390)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH---HHHHHTSSSCEEE
T ss_pred HHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHh-cCC--CCEEEeCCCC---ccccccCcCCeEE
Confidence 47889999999999 6999999988888887665321 234 6799999997 3555556655444
No 51
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=57.61 E-value=5.7 Score=38.56 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=42.4
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHH-c------------CCCceEeeeccccccCc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-R------------GLQVAVAGIPKTIDNDI 123 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~-~------------g~~i~vIgIPkTIDNDi 123 (381)
..+++++.+++.+.|.+|-|||--.++.|..++-.... . .-.+++|.||-|--.+-
T Consensus 86 ~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgs 154 (371)
T 1o2d_A 86 NVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGS 154 (371)
T ss_dssp HHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCG
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchhh
Confidence 47888999999999999999998889988877654321 0 02367999998865543
No 52
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=56.97 E-value=11 Score=36.69 Aligned_cols=52 Identities=8% Similarity=0.070 Sum_probs=40.6
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHH------c-------CCCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------R-------GLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~------~-------g~~i~vIgIPkTI 119 (381)
..+++++.++++++|.+|-|||--.++.|..++-.... . .-.+++|.||-|-
T Consensus 80 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~ 144 (387)
T 3bfj_A 80 NVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTA 144 (387)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECST
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence 47889999999999999999998889988877653211 0 0136799999987
No 53
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=56.13 E-value=42 Score=29.60 Aligned_cols=76 Identities=9% Similarity=0.044 Sum_probs=38.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHH-HHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK-EVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~-~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~ 147 (381)
..++++.+...++|++|+.+.+ -. ..+ .+.+.|++ || ++|++.+..+ ++++|-. ..+..+.+.+.
T Consensus 53 ~~~~~~~l~~~~~dgiIi~~~~--~~----~~~~~l~~~~iP--vV----~~~~~~~~~~-~V~~D~~-~~g~~a~~~L~ 118 (277)
T 3e61_A 53 AQGYLATFVSHNCTGMISTAFN--EN----IIENTLTDHHIP--FV----FIDRINNEHN-GISTNHF-KGGQLQAEVVR 118 (277)
T ss_dssp HHHHHHHHHHTTCSEEEECGGG--HH----HHHHHHHHC-CC--EE----EGGGCC----------HH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEecCC--hH----HHHHHHHcCCCC--EE----EEeccCCCCC-eEEechH-HHHHHHHHHHH
Confidence 4567889999999999998832 11 123 44555644 66 4566665555 7777742 23333444443
Q ss_pred HhhhhcCcceEEEE
Q 016855 148 VEVESVENGVGIVK 161 (381)
Q Consensus 148 ~tA~S~~~rv~iVE 161 (381)
. ..| +++.++-
T Consensus 119 ~--~G~-~~i~~i~ 129 (277)
T 3e61_A 119 K--GKG-KNVLIVH 129 (277)
T ss_dssp H--TTC-CSEEEEE
T ss_pred H--CCC-CeEEEEe
Confidence 3 255 4676664
No 54
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=55.69 E-value=7.3 Score=36.57 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=37.4
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCcc
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 124 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~ 124 (381)
.+..++++.+.+ +.|.+|++|||||+..+. +.+.....++++-.||.==-||+.
T Consensus 51 ~~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~---~~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 51 GDATKYCQEFAS-KVDLIIVFGGDGTVFECT---NGLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp THHHHHHHHHTT-TCSEEEEEECHHHHHHHH---HHHTTCSSCCEEEEEECSSCCHHH
T ss_pred chHHHHHHHhhc-CCCEEEEEccchHHHHHH---HHHhhCCCCCcEEEecCCcHHHHH
Confidence 445566666554 899999999999987542 222222245778899987788885
No 55
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=55.00 E-value=11 Score=36.79 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=40.2
Q ss_pred chHHHHHHHHHcC---CcEEEEEcCCCcHHHHHHHHHHHHHc-------------CCCceEeeeccccc
Q 016855 68 DTNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTID 120 (381)
Q Consensus 68 ~~~~i~~~l~~~~---Id~LvvIGGdgS~~~a~~L~~~~~~~-------------g~~i~vIgIPkTID 120 (381)
..+++++.+++.+ .|.+|-|||--+++.|..++-.+... .-.+++|.||-|--
T Consensus 94 ~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag 162 (375)
T 3rf7_A 94 QVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSG 162 (375)
T ss_dssp HHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCS
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCc
Confidence 4788899999998 99999999988899888876543100 01367999997753
No 56
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=54.38 E-value=1e+02 Score=26.92 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=43.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC-CCCCChHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t-D~tiGFdTA~~~~~~ai~~l~ 147 (381)
..+.++.|...++|++|+.+.+.+-.. .+.+.+.+++ +|.+ |++.+.. -.++++|-. ..+..+.+.+.
T Consensus 48 ~~~~~~~l~~~~vdgii~~~~~~~~~~----~~~l~~~~iP--vV~~----~~~~~~~~~~~V~~d~~-~~~~~a~~~L~ 116 (275)
T 3d8u_A 48 EEKLLSTFLESRPAGVVLFGSEHSQRT----HQLLEASNTP--VLEI----AELSSKASYLNIGVDHF-EVGKACTRHLI 116 (275)
T ss_dssp HHHHHHHHHTSCCCCEEEESSCCCHHH----HHHHHHHTCC--EEEE----SSSCSSSSSEEECBCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHH----HHHHHhCCCC--EEEE----eeccCCCCCCEEEEChH-HHHHHHHHHHH
Confidence 345788888999999999988765322 2334445654 6655 3333221 135666632 22233334343
Q ss_pred HhhhhcCcceEEEE
Q 016855 148 VEVESVENGVGIVK 161 (381)
Q Consensus 148 ~tA~S~~~rv~iVE 161 (381)
. ..| +++.++-
T Consensus 117 ~--~G~-~~i~~i~ 127 (275)
T 3d8u_A 117 E--QGF-KNVGFIG 127 (275)
T ss_dssp T--TTC-CCEEEEE
T ss_pred H--CCC-CeEEEEc
Confidence 3 255 4677764
No 57
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=53.75 E-value=11 Score=36.35 Aligned_cols=49 Identities=20% Similarity=0.403 Sum_probs=38.6
Q ss_pred chHHHHHHHHHcCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~I---d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
..+++.+.++++++ |.+|-+||--.++.|..++-.+ .+| +++|.||-|.
T Consensus 69 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~-~rg--ip~i~IPTTl 120 (348)
T 1ujn_A 69 VYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATY-LRG--VAYLAFPTTT 120 (348)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHh-ccC--CCEEEecCcH
Confidence 47788899999998 8999999988888887766421 234 6799999875
No 58
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=53.21 E-value=6.1 Score=38.38 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=43.0
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 134 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdT 134 (381)
..+++.+.+++ +.|.+|-|||-=.++.|..++-. ++ +++|.||-| ++||..++--+
T Consensus 83 ~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTT-----a~tgSevt~~a 138 (376)
T 1kq3_A 83 EIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYK---LK--KPVVIVPTI-----ASTDAPCSALS 138 (376)
T ss_dssp HHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESS-----CCCSCTTSSEE
T ss_pred HHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEecCc-----cccCcccCCeE
Confidence 46777777888 99999999998888888877732 35 569999998 77776555433
No 59
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=52.83 E-value=9.8 Score=37.37 Aligned_cols=53 Identities=9% Similarity=0.106 Sum_probs=40.6
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHH--------c-----CCCceEeeeccccc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK--------R-----GLQVAVAGIPKTID 120 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~--------~-----g~~i~vIgIPkTID 120 (381)
..+++++.+++.++|.+|-|||--.++.|..++-.... . .-.+++|.||-|--
T Consensus 89 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTag 154 (407)
T 1vlj_A 89 KVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISA 154 (407)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCS
T ss_pred HHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 47889999999999999999998889988877653210 0 02367999998853
No 60
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=51.00 E-value=35 Score=30.73 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=46.3
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC---CCCCChH--HHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI---DKSFGFD--TAVEEAQRAI 143 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t---D~tiGFd--TA~~~~~~ai 143 (381)
..++++.|...++|++|+.+.+.+-. +.+.+.+.+++ ||. +|++++.. -.++++| .+...+++.+
T Consensus 57 ~~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~iP--vV~----i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L 126 (295)
T 3hcw_A 57 MDEVYKMIKQRMVDAFILLYSKENDP----IKQMLIDESMP--FIV----IGKPTSDIDHQFTHIDNDNILASENLTRHV 126 (295)
T ss_dssp HHHHHHHHHTTCCSEEEESCCCTTCH----HHHHHHHTTCC--EEE----ESCCCSSGGGGSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcCEEEEcCcccChH----HHHHHHhCCCC--EEE----ECCCCccccCCceEEecCcHHHHHHHHHHH
Confidence 45678899999999999998775532 22334455654 664 46665543 2355544 3444444433
Q ss_pred HHHHHhhhhcCcceEEEEe
Q 016855 144 NAAHVEVESVENGVGIVKL 162 (381)
Q Consensus 144 ~~l~~tA~S~~~rv~iVEv 162 (381)
.. ..| +++.++--
T Consensus 127 ---~~--~G~-~~I~~i~~ 139 (295)
T 3hcw_A 127 ---IE--QGV-DELIFITE 139 (295)
T ss_dssp ---HH--HCC-SEEEEEEE
T ss_pred ---HH--cCC-ccEEEEcC
Confidence 32 366 46777653
No 61
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=50.91 E-value=7.2 Score=39.14 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=44.9
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 137 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~ 137 (381)
..+++.+.+++ +.|.+|-|||-=.++.|..++-. ++ +++|.||-| ++||..++--+.++
T Consensus 134 ~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~---~g--iP~I~IPTT-----AgtgSevt~~avI~ 192 (450)
T 1ta9_A 134 ELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHS---MN--LPSIICPTT-----ASSDAATSSLSVIY 192 (450)
T ss_dssp HHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESS-----CSCSCTTCSEEEEC
T ss_pred HHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEEeCC-----CccCcccCCceEEE
Confidence 56777888888 99999999998889988888732 35 569999999 66776665444443
No 62
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=50.21 E-value=19 Score=34.54 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=39.7
Q ss_pred chHHHHHHHHHcCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~I---d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
..+++.+.++++++ |.+|-+||--.++.|..++-.. .+| +++|.||-|.
T Consensus 70 ~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~-~rg--ip~i~IPTTl 121 (343)
T 3clh_A 70 SLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIY-FRG--IDFINIPTTL 121 (343)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH
T ss_pred HHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHh-ccC--CCEEEeCCch
Confidence 47889999999999 9999999988888877665321 234 6799999996
No 63
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=50.00 E-value=17 Score=34.87 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=39.9
Q ss_pred chHHHHHHHHHcCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~I---d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
..+++.+.++++++ |.+|-|||--.++.|..++-.+ .+| +++|.||-|.
T Consensus 75 ~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~-~rg--ip~i~IPTT~ 126 (354)
T 1xah_A 75 QYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL-LRG--VHFIQVPTTI 126 (354)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECST
T ss_pred HHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh-ccC--CCEEEECCcc
Confidence 47889999999999 9999999988888887766422 234 6799999997
No 64
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=49.94 E-value=1.1e+02 Score=26.79 Aligned_cols=90 Identities=10% Similarity=0.022 Sum_probs=45.1
Q ss_pred CCCchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCc-cCC-CCCCChHHHHHHHHHH
Q 016855 65 GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI-AVI-DKSFGFDTAVEEAQRA 142 (381)
Q Consensus 65 ~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi-~~t-D~tiGFdTA~~~~~~a 142 (381)
..+...+.++.|...++|++| ++.+.+.. .+.+ .+ ++||. +|++. ... ..++++|- .+.+..+
T Consensus 45 ~~~~~~~~~~~l~~~~vdgiI-~~~~~~~~---~~~~----~~--iPvV~----~~~~~~~~~~~~~V~~D~-~~~g~~a 109 (280)
T 3gyb_A 45 TSQAGTDPITSALSMRPDGII-IAQDIPDF---TVPD----SL--PPFVI----AGTRITQASTHDSVANDD-FRGAEIA 109 (280)
T ss_dssp SSCSSSCHHHHHHTTCCSEEE-EESCC---------------C--CCEEE----ESCCCSSSCSTTEEEECH-HHHHHHH
T ss_pred CchHHHHHHHHHHhCCCCEEE-ecCCCChh---hHhh----cC--CCEEE----ECCCCCCCCCCCEEEech-HHHHHHH
Confidence 334456788889999999999 88776632 2211 35 45664 45554 211 13455553 2223333
Q ss_pred HHHHHHhhhhcCcceEEEEecC-----CCccHHHH
Q 016855 143 INAAHVEVESVENGVGIVKLMG-----RYSGFISM 172 (381)
Q Consensus 143 i~~l~~tA~S~~~rv~iVEvMG-----R~aG~LAl 172 (381)
.+.+.. ..| +++.++--.. |..||...
T Consensus 110 ~~~L~~--~G~-~~i~~i~~~~~~~~~R~~gf~~~ 141 (280)
T 3gyb_A 110 TKHLID--LGH-THIAHLRVGSGAGLRRFESFEAT 141 (280)
T ss_dssp HHHHHH--TTC-CSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHH--CCC-CeEEEEeCCCchHHHHHHHHHHH
Confidence 333332 255 4676664332 34455543
No 65
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=43.60 E-value=1.5e+02 Score=27.13 Aligned_cols=47 Identities=4% Similarity=0.118 Sum_probs=27.5
Q ss_pred HHHHHHHHH--cCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccC
Q 016855 70 NKIVDNIED--RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 125 (381)
Q Consensus 70 ~~i~~~l~~--~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~ 125 (381)
.+.++.+.. .++|++|+.+ +.... ..+.+.+.+.| ++||. +|++++.
T Consensus 50 ~~~i~~~i~~~~~vDgiIi~~-~~~~~--~~~~~~~~~~g--iPvV~----~~~~~~~ 98 (350)
T 3h75_A 50 LQQARELFQGRDKPDYLMLVN-EQYVA--PQILRLSQGSG--IKLFI----VNSPLTL 98 (350)
T ss_dssp HHHHHHHHHSSSCCSEEEEEC-CSSHH--HHHHHHHTTSC--CEEEE----EESCCCT
T ss_pred HHHHHHHHhcCCCCCEEEEeC-chhhH--HHHHHHHHhCC--CcEEE----EcCCCCh
Confidence 445666666 6999999997 43321 22334444455 55774 4555544
No 66
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=42.87 E-value=35 Score=24.95 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=38.3
Q ss_pred ccccCCCCchHHHHHHHHHcCCc---------EEEEEcCCCcHHHHHHHHHHHHHcCCC
Q 016855 60 LRTSRGGHDTNKIVDNIEDRGIN---------QVYIIGGDGTQKGAALIYKEVEKRGLQ 109 (381)
Q Consensus 60 LGtsR~~~~~~~i~~~l~~~~Id---------~LvvIGGdgS~~~a~~L~~~~~~~g~~ 109 (381)
+|+-+..++.++..+.|++.|++ +-|.+|...+...|..+.+.+.+.|++
T Consensus 14 vGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~ 72 (79)
T 1x60_A 14 IGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCc
Confidence 44444455678888889888877 456788888888999998888887875
No 67
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=42.52 E-value=29 Score=25.66 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=39.0
Q ss_pred ccccCCCCchHHHHHHHHHcCCc---------EEEEEcCCCcHHHHHHHHHHHHHcCCC
Q 016855 60 LRTSRGGHDTNKIVDNIEDRGIN---------QVYIIGGDGTQKGAALIYKEVEKRGLQ 109 (381)
Q Consensus 60 LGtsR~~~~~~~i~~~l~~~~Id---------~LvvIGGdgS~~~a~~L~~~~~~~g~~ 109 (381)
+|+-+..++.++..+.|+..++. +-|.+|...+...|..+.+.+++.|++
T Consensus 14 vGaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~ 72 (81)
T 1uta_A 14 CGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHT 72 (81)
T ss_dssp CCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCS
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCC
Confidence 45545556678888999988887 457788888888999888888887875
No 68
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=42.48 E-value=19 Score=35.14 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=44.4
Q ss_pred chHHHHHHHHHcC--C---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHH
Q 016855 68 DTNKIVDNIEDRG--I---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 134 (381)
Q Consensus 68 ~~~~i~~~l~~~~--I---d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdT 134 (381)
..+++.+.+.+++ + |.+|.+||-=.++.|..++-.+ .+| +++|.||-|. +.++|.++|--|
T Consensus 88 ~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl---la~~dasvg~kt 153 (393)
T 1sg6_A 88 TKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MRG--VRYVQVPTTL---LAMVDSSIGGKT 153 (393)
T ss_dssp HHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH---HHHHTTTSSCEE
T ss_pred HHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEECCch---hhhhhcCcceEE
Confidence 4788999999999 9 9999999988888877665422 345 5699999986 234444444333
No 69
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=42.16 E-value=36 Score=32.30 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=39.3
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccC
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 122 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDND 122 (381)
+++.+++.|.+ ..|.+++|||-.|-.+ .+|++.+++.|.+.-.|-=+.=||-+
T Consensus 198 ~RQ~av~~la~-~~D~miVVGg~nSSNT-~rL~eia~~~~~~ty~Ie~~~el~~~ 250 (297)
T 3dnf_A 198 LRQESVKKLAP-EVDVMIIIGGKNSGNT-RRLYYISKELNPNTYHIETAEELQPE 250 (297)
T ss_dssp HHHHHHHHHGG-GSSEEEEESCTTCHHH-HHHHHHHHHHCSSEEEESSGGGCCGG
T ss_pred HHHHHHHHHHh-hCCEEEEECCCCCchh-HHHHHHHHhcCCCEEEeCChHHCCHH
Confidence 47788888877 4999999999998755 57888888877654344445566554
No 70
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=40.99 E-value=12 Score=35.82 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=40.7
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCcc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 124 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~ 124 (381)
..+++ +.+++.+.|.+|-|||--.++.|..++ ++ ++ +++|.||-|.-.|-.
T Consensus 77 ~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~--~~--~p~i~IPTT~~tgse 127 (354)
T 3ce9_A 77 EIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FL--RK--LPFISVPTSTSNDGF 127 (354)
T ss_dssp HHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HH--HT--CCEEEEESCCSSGGG
T ss_pred HHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hh--cC--CCEEEecCcccCCCC
Confidence 46788 888889999999999988888888777 32 35 569999999865443
No 71
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=40.85 E-value=45 Score=28.15 Aligned_cols=49 Identities=27% Similarity=0.513 Sum_probs=34.6
Q ss_pred chHHHHHHHH-HcCCcEEEEEcCCCcHHHHHHHHHHHHHc-CCCceEeeecccc
Q 016855 68 DTNKIVDNIE-DRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~-~~~Id~LvvIGGdgS~~~a~~L~~~~~~~-g~~i~vIgIPkTI 119 (381)
|..-+++.++ ...+|.++++-||+-+.-+ .+.++++ |..+-++|.|+..
T Consensus 95 Dv~laiD~~~~a~~~d~~vLvSgD~DF~pl---v~~lr~~~G~~V~v~g~~~~~ 145 (165)
T 2qip_A 95 DVGITLDAIEIAPDVDRVILVSGDGDFSLL---VERIQQRYNKKVTVYGVPRLT 145 (165)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCGGGHHH---HHHHHHHHCCEEEEEECGGGS
T ss_pred cHHHHHHHHHhhccCCEEEEEECChhHHHH---HHHHHHHcCcEEEEEeCCCcC
Confidence 5555555442 2579999999999998754 4555664 9888888887643
No 72
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=40.81 E-value=1.5e+02 Score=26.23 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=41.9
Q ss_pred HHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC-CCCCChHH--HHHHHHHHHHHHHH
Q 016855 72 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDT--AVEEAQRAINAAHV 148 (381)
Q Consensus 72 i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t-D~tiGFdT--A~~~~~~ai~~l~~ 148 (381)
.++.+...++|++|+.+.+.+-.. .+.+.+.+++ ||.+ |.+.+.. -.++++|- +...+++ .+..
T Consensus 59 ~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~iP--vV~~----~~~~~~~~~~~V~~D~~~~g~~a~~---~L~~ 125 (290)
T 2rgy_A 59 AVRFLIGRDCDGVVVISHDLHDED----LDELHRMHPK--MVFL----NRAFDALPDASFCPDHRRGGELAAA---TLIE 125 (290)
T ss_dssp HHHHHHHTTCSEEEECCSSSCHHH----HHHHHHHCSS--EEEE----SSCCTTSGGGEECCCHHHHHHHHHH---HHHH
T ss_pred HHHHHHhcCccEEEEecCCCCHHH----HHHHhhcCCC--EEEE----ccccCCCCCCEEEeCcHHHHHHHHH---HHHH
Confidence 788899999999999998766322 2333445654 6655 3333321 13555553 3333333 3332
Q ss_pred hhhhcCcceEEEE
Q 016855 149 EVESVENGVGIVK 161 (381)
Q Consensus 149 tA~S~~~rv~iVE 161 (381)
..| +++.++-
T Consensus 126 --~G~-~~I~~i~ 135 (290)
T 2rgy_A 126 --HGH-RKLAVIS 135 (290)
T ss_dssp --TTC-CSEEEEE
T ss_pred --CCC-ceEEEEe
Confidence 255 4677764
No 73
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=40.48 E-value=49 Score=28.81 Aligned_cols=49 Identities=24% Similarity=0.374 Sum_probs=28.4
Q ss_pred cCCCCchHHHHHHHHHcCCcEEEEEcC-CCcHHHHHHHHHHHHHcCCCceEeeeccc
Q 016855 63 SRGGHDTNKIVDNIEDRGINQVYIIGG-DGTQKGAALIYKEVEKRGLQVAVAGIPKT 118 (381)
Q Consensus 63 sR~~~~~~~i~~~l~~~~Id~LvvIGG-dgS~~~a~~L~~~~~~~g~~i~vIgIPkT 118 (381)
-|.++...+.+++.++.+++.+|.+-| .+.+-+. ++- ....+|||||-.
T Consensus 44 HR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 44 HRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGT--IAA-----HTLKPVIGVPMA 93 (169)
T ss_dssp TTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHH--HHH-----TCSSCEEEEECC
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH--HHh-----cCCCCEEEeecC
Confidence 344455666667777777776655533 3334332 221 245789999964
No 74
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=40.45 E-value=1.9e+02 Score=25.29 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=45.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC-CCCCChH--HHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFD--TAVEEAQRAINA 145 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t-D~tiGFd--TA~~~~~~ai~~ 145 (381)
..+.++.|...++|++|+.+-+. - ...+.+.+.++ +||.+ |++++.. -.++++| .+...+++ .
T Consensus 52 ~~~~~~~l~~~~vdgiIi~~~~~-~----~~~~~l~~~~i--PvV~i----~~~~~~~~~~~V~~D~~~~g~~a~~---~ 117 (276)
T 3jy6_A 52 EKTLLRAIGSRGFDGLILQSFSN-P----QTVQEILHQQM--PVVSV----DREMDACPWPQVVTDNFEAAKAATT---A 117 (276)
T ss_dssp HHHHHHHHHTTTCSEEEEESSCC-H----HHHHHHHTTSS--CEEEE----SCCCTTCSSCEEECCHHHHHHHHHH---H
T ss_pred HHHHHHHHHhCCCCEEEEecCCc-H----HHHHHHHHCCC--CEEEE----ecccCCCCCCEEEEChHHHHHHHHH---H
Confidence 45678899999999999999887 2 23344445564 46654 5554432 2345554 33333333 3
Q ss_pred HHHhhhhcCcceEEEEecC
Q 016855 146 AHVEVESVENGVGIVKLMG 164 (381)
Q Consensus 146 l~~tA~S~~~rv~iVEvMG 164 (381)
+.. ..| +++.++--..
T Consensus 118 L~~--~G~-~~I~~i~~~~ 133 (276)
T 3jy6_A 118 FRQ--QGY-QHVVVLTSEL 133 (276)
T ss_dssp HHT--TTC-CEEEEEEECS
T ss_pred HHH--cCC-CeEEEEecCC
Confidence 332 355 4677765433
No 75
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=40.26 E-value=70 Score=28.25 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=46.1
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHH-HHHHHHHHHHHcCCCceEeeeccccccCccCCC-CCCChHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQK-GAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAA 146 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~-~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD-~tiGFdTA~~~~~~ai~~l 146 (381)
..+.++.|...++|++|+.+.+.+.. ....+.+.+.+.+++ ||. +|++.+..+ .++++|- .+.+..+.+.+
T Consensus 60 ~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iP--vV~----~~~~~~~~~~~~V~~d~-~~~~~~a~~~L 132 (298)
T 3tb6_A 60 ERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIP--FAM----INASYAELAAPSFTLDD-VKGGMMAAEHL 132 (298)
T ss_dssp HHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCC--EEE----ESSCCTTCSSCEEEECH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCC--EEE----EecCcCCCCCCEEEeCc-HHHHHHHHHHH
Confidence 45678889999999999999875421 111233444555654 664 455554322 2555543 22233334433
Q ss_pred HHhhhhcCcceEEEEe
Q 016855 147 HVEVESVENGVGIVKL 162 (381)
Q Consensus 147 ~~tA~S~~~rv~iVEv 162 (381)
.. ..| +++.++--
T Consensus 133 ~~--~G~-~~i~~i~~ 145 (298)
T 3tb6_A 133 LS--LGH-THMMGIFK 145 (298)
T ss_dssp HH--TTC-CSEEEEEE
T ss_pred HH--CCC-CcEEEEcC
Confidence 33 255 46777653
No 76
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=40.12 E-value=58 Score=28.16 Aligned_cols=85 Identities=19% Similarity=0.323 Sum_probs=44.9
Q ss_pred CCCCchHHHHHHHHHcCCcEEEEE-cCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHH
Q 016855 64 RGGHDTNKIVDNIEDRGINQVYII-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA 142 (381)
Q Consensus 64 R~~~~~~~i~~~l~~~~Id~LvvI-GGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~a 142 (381)
|.++...+..++.++.+++.+|.+ |+.+.+-+. ++- ....+|||||-... ++ -|.|
T Consensus 42 R~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~~~-~l------~G~d--------- 98 (163)
T 3ors_A 42 RTPKMMVQFASEARERGINIIIAGAGGAAHLPGM--VAS-----LTTLPVIGVPIETK-SL------KGID--------- 98 (163)
T ss_dssp TSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--HHH-----HCSSCEEEEEECCT-TT------TTHH---------
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH--HHh-----ccCCCEEEeeCCCC-CC------CCHH---------
Confidence 444455566666666777766555 334444443 221 13577999996543 11 1333
Q ss_pred HHHHHHhhhhcCcce--EEEEe---cCCCccHHHHHH
Q 016855 143 INAAHVEVESVENGV--GIVKL---MGRYSGFISMYA 174 (381)
Q Consensus 143 i~~l~~tA~S~~~rv--~iVEv---MGR~aG~LAl~a 174 (381)
.+.+... ++..+ ..|=+ =|.++|++|+..
T Consensus 99 --sLlS~vq-mp~GvPVatV~I~~a~~~nAa~lAa~I 132 (163)
T 3ors_A 99 --SLLSIVQ-MPGGIPVATTAIGAAGAKNAGILAARM 132 (163)
T ss_dssp --HHHHHHT-CCTTSCCEECCSTHHHHHHHHHHHHHH
T ss_pred --HHHHHhh-CCCCCceEEEEcCCcccHHHHHHHHHH
Confidence 3333333 33333 55555 367888887654
No 77
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=37.34 E-value=28 Score=33.86 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=39.0
Q ss_pred chHHHHHHHHHcCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 68 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 68 ~~~~i~~~l~~~~I---d~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
..+++.+.+.++++ |.+|.+||--.++.|..++..+ .+| +++|.||-|.
T Consensus 88 ~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 139 (368)
T 3qbe_A 88 VVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATW-LRG--VSIVHLPTTL 139 (368)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHh-ccC--CcEEEECCCC
Confidence 47788899998875 9999999988888887776432 345 5699999997
No 78
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=37.03 E-value=34 Score=32.94 Aligned_cols=40 Identities=10% Similarity=0.312 Sum_probs=32.4
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCC
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ 109 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~ 109 (381)
+++.+++.|.+. .|.+++|||-.|-.+ .+|++.+++.|.+
T Consensus 214 ~RQ~av~~lA~~-vD~miVVGg~nSSNT-~rL~eia~~~g~~ 253 (328)
T 3szu_A 214 NRQEAVRALAEQ-AEVVLVVGSKNSSNS-NRLAELAQRMGKR 253 (328)
T ss_dssp HHHHHHHHHHHH-CSEEEEECCTTCHHH-HHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHh-CCEEEEeCCCCCchH-HHHHHHHHHhCCC
Confidence 577888888775 999999999998755 5788888887754
No 79
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=35.92 E-value=60 Score=28.38 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=30.3
Q ss_pred cCCCCchHHHHHHHHHcCCcEEEEE-cCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 63 SRGGHDTNKIVDNIEDRGINQVYII-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 63 sR~~~~~~~i~~~l~~~~Id~LvvI-GGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
-|.++...+.+++.++.+++.+|.+ |+.+.+-+. ++- ....+|||||-..
T Consensus 45 HR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~~ 95 (174)
T 3lp6_A 45 HRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGM--VAA-----ATPLPVIGVPVPL 95 (174)
T ss_dssp TTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHH--HHH-----HCSSCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHH--HHh-----ccCCCEEEeeCCC
Confidence 3444556777777777788866655 344444443 221 1357799999654
No 80
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=35.69 E-value=39 Score=29.76 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=7.8
Q ss_pred CCceEeeecc
Q 016855 108 LQVAVAGIPK 117 (381)
Q Consensus 108 ~~i~vIgIPk 117 (381)
...+|||||-
T Consensus 99 T~~PVIGVPv 108 (181)
T 4b4k_A 99 TNLPVIGVPV 108 (181)
T ss_dssp CCSCEEEEEC
T ss_pred CCCCEEEEec
Confidence 3577999996
No 81
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=34.53 E-value=32 Score=26.93 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCCceEeeeccccccCc
Q 016855 95 GAALIYKEVEKRGLQVAVAGIPKTIDNDI 123 (381)
Q Consensus 95 ~a~~L~~~~~~~g~~i~vIgIPkTIDNDi 123 (381)
....|.+.+++++...-|||.|+++|+..
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~ 67 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKE 67 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSS
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCc
Confidence 34556666666677667999999999876
No 82
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=34.28 E-value=96 Score=27.83 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=26.7
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcH-HHHHHHHHHHHHcCCCceEeee
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQ-KGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~-~~a~~L~~~~~~~g~~i~vIgI 115 (381)
..+.++.|...++|++|+.+.+.+. .. ..+.+.+.++ +||.+
T Consensus 47 ~~~~i~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~~i--PvV~~ 89 (306)
T 2vk2_A 47 QIKAVRSFVAQGVDAIFIAPVVATGWEP---VLKEAKDAEI--PVFLL 89 (306)
T ss_dssp HHHHHHHHHHHTCSEEEECCSSSSSCHH---HHHHHHHTTC--CEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhHHH---HHHHHHHCCC--CEEEe
Confidence 3457788888999999999877542 22 1233344564 46654
No 83
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=33.91 E-value=1.5e+02 Score=26.54 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=64.5
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC--CCCChHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINAA 146 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD--~tiGFdTA~~~~~~ai~~l 146 (381)
..+.++.+...++|++|+.+-+.+... .+.+.+.+.| ++||.+ |++++..+ .++++|-. .....+.+.+
T Consensus 47 ~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L 117 (313)
T 3m9w_A 47 QMSQIENMINRGVDVLVIIPYNGQVLS--NVVKEAKQEG--IKVLAY----DRMINDADIDFYISFDNE-KVGELQAKAL 117 (313)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSTTSCH--HHHHHHHTTT--CEEEEE----SSCCTTSCCSEEEEECHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhhH--HHHHHHHHCC--CeEEEE----CCcCCCCCceEEEecCHH-HHHHHHHHHH
Confidence 456788899999999999998765311 1223334445 457754 55554433 36776632 2233333333
Q ss_pred HHhhhhcCcceEEEEe-cC------CCccHHHHHHhhhcCCccEEEcCCC---CCCCCChhhHHHHHHHHHHhC
Q 016855 147 HVEVESVENGVGIVKL-MG------RYSGFISMYATLASRDVDCCLIPES---PFYLEGPGGLFEFIERQLKEN 210 (381)
Q Consensus 147 ~~tA~S~~~rv~iVEv-MG------R~aG~LAl~aaLA~~~ad~iliPE~---~~~~~~~~~~~~~I~~~~~~~ 210 (381)
.. ...| +++.++-- .+ |..||......... .+++-++++. .++.+ .-.+.+++.+++.
T Consensus 118 ~~-~~G~-~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 185 (313)
T 3m9w_A 118 VD-IVPQ-GNYFLMGGSPVDNNAKLFRAGQMKVLKPYVD-SGKIKVVGDQWVDGWLPE---NALKIMENALTAN 185 (313)
T ss_dssp HH-HCSS-EEEEEEESCTTCHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEECGGGCHH---HHHHHHHHHHHHT
T ss_pred HH-hCCC-CcEEEEECCCCCccHHHHHHHHHHHHHhhcc-CCCEEEEeeccCCCcCHH---HHHHHHHHHHHhC
Confidence 31 1455 46766632 22 33455544333211 1345554432 22322 3445566666553
No 84
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=33.08 E-value=3.3e+02 Score=26.05 Aligned_cols=103 Identities=14% Similarity=0.149 Sum_probs=61.4
Q ss_pred CCcEEEEEcCCCc---HHHHHHHHHHHHHcCCCceEeeeccccc---cCccCCCCCCChHHHHHHHHHHHHHHHHhhhhc
Q 016855 80 GINQVYIIGGDGT---QKGAALIYKEVEKRGLQVAVAGIPKTID---NDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 153 (381)
Q Consensus 80 ~Id~LvvIGGdgS---~~~a~~L~~~~~~~g~~i~vIgIPkTID---NDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~ 153 (381)
....+++.|=|-+ +..+..|.+.++++|+++..++-.-|.. .|....-..+-++-++-.....+.++. ...
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~e~~i~~~~--~~~- 244 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLE--KTG- 244 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHHHHHHHHHH--HTT-
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHHHhhHHHhh--hcC-
Confidence 5567888887755 6677888889999999876666554433 322111114445544444444444333 223
Q ss_pred CcceEEEEecCC--CccHHHHHHhhhcC-CccEEEc
Q 016855 154 ENGVGIVKLMGR--YSGFISMYATLASR-DVDCCLI 186 (381)
Q Consensus 154 ~~rv~iVEvMGR--~aG~LAl~aaLA~~-~ad~ili 186 (381)
..+.|||-.|- +..+.....++..+ .||.+++
T Consensus 245 -~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl 279 (350)
T 2g0t_A 245 -KEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFL 279 (350)
T ss_dssp -CSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEE
T ss_pred -CCEEEEccCeeccccCchHHHHHHHcCCCCCEEEE
Confidence 24899999984 45655544444332 6888887
No 85
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=32.03 E-value=2.1e+02 Score=26.39 Aligned_cols=134 Identities=14% Similarity=0.191 Sum_probs=75.8
Q ss_pred hHHHHHHHHHcCCcEE--EEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCC-CCC--------hHHHHH
Q 016855 69 TNKIVDNIEDRGINQV--YIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDK-SFG--------FDTAVE 137 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~L--vvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~-tiG--------FdTA~~ 137 (381)
+++..+.|++.+=.+| ++.-||-++....++.+.+.+.|.++-=+|+|= .|- .-|- +|= ..+-++
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPf---SDP-~aDGpvIq~a~~rAL~~G~~~~ 82 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPF---SDP-LADGPTIQGANLRALAAKTTPD 82 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCC---CCG-GGCCSHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC---CCC-CCCCHHHHHHHHHHHHcCCCHH
Confidence 4566777777765555 567899999999999999999898887899996 222 1120 110 001122
Q ss_pred HHHHHHHHHHHhhhhcCcceEEEEecCCC-----ccHHHH-HHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCC
Q 016855 138 EAQRAINAAHVEVESVENGVGIVKLMGRY-----SGFISM-YATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 211 (381)
Q Consensus 138 ~~~~ai~~l~~tA~S~~~rv~iVEvMGR~-----aG~LAl-~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~~ 211 (381)
.+.+.+.+++..-...+ +. +|+=. -|.-.. ..+..+ |+|.+++|..|++.. +.+++..++.+
T Consensus 83 ~~~~~v~~~r~~~~~~P--iv---lm~Y~n~v~~~g~~~f~~~~~~a-GvdGvIipDlp~ee~------~~~~~~~~~~g 150 (271)
T 3nav_A 83 ICFELIAQIRARNPETP--IG---LLMYANLVYARGIDDFYQRCQKA-GVDSVLIADVPTNES------QPFVAAAEKFG 150 (271)
T ss_dssp HHHHHHHHHHHHCTTSC--EE---EEECHHHHHHTCHHHHHHHHHHH-TCCEEEETTSCGGGC------HHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCC--EE---EEecCcHHHHHhHHHHHHHHHHC-CCCEEEECCCCHHHH------HHHHHHHHHcC
Confidence 34455565654322222 22 35421 132222 222234 799999998887422 34455555555
Q ss_pred ce-EEEEe
Q 016855 212 HM-VIVVA 218 (381)
Q Consensus 212 ~~-iIvVs 218 (381)
-. +.+++
T Consensus 151 l~~I~lva 158 (271)
T 3nav_A 151 IQPIFIAP 158 (271)
T ss_dssp CEEEEEEC
T ss_pred CeEEEEEC
Confidence 33 33554
No 86
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=31.91 E-value=1.2e+02 Score=27.07 Aligned_cols=78 Identities=4% Similarity=-0.050 Sum_probs=44.1
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC-CCCCChH--HHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFD--TAVEEAQRAINA 145 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t-D~tiGFd--TA~~~~~~ai~~ 145 (381)
..++++.+...++|++|+.+.+.+-.. .+.+.+.+++ ||. +|++.... ..++++| .+...+++.+
T Consensus 72 ~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~iP--vV~----i~~~~~~~~~~~V~~D~~~~g~~a~~~L-- 139 (305)
T 3huu_A 72 YHEVKTMIQSKSVDGFILLYSLKDDPI----EHLLNEFKVP--YLI----VGKSLNYENIIHIDNDNIDAAYQLTQYL-- 139 (305)
T ss_dssp HHHHHHHHHTTCCSEEEESSCBTTCHH----HHHHHHTTCC--EEE----ESCCCSSTTCCEEECCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCEEEEeCCcCCcHH----HHHHHHcCCC--EEE----ECCCCcccCCcEEEeCHHHHHHHHHHHH--
Confidence 456789999999999999987765432 2344455654 664 44444221 2345444 3333333333
Q ss_pred HHHhhhhcCcceEEEEe
Q 016855 146 AHVEVESVENGVGIVKL 162 (381)
Q Consensus 146 l~~tA~S~~~rv~iVEv 162 (381)
.. ..| +++.++--
T Consensus 140 -~~--~G~-~~I~~i~~ 152 (305)
T 3huu_A 140 -YH--LGH-RHILFLQE 152 (305)
T ss_dssp -HH--TTC-CSEEEEEE
T ss_pred -HH--CCC-CeEEEEcC
Confidence 22 255 46777643
No 87
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=31.26 E-value=1.8e+02 Score=26.79 Aligned_cols=136 Identities=16% Similarity=0.236 Sum_probs=76.9
Q ss_pred hHHHHHHHHHcCCcEE--EEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCC---------CCChHHHHH
Q 016855 69 TNKIVDNIEDRGINQV--YIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDK---------SFGFDTAVE 137 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~L--vvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~---------tiGFdTA~~ 137 (381)
+++..+.|++.+=.+| ++.-||=++....++.+.+.+.|.++-=+|+|= .| |.-|- .+-+.+-++
T Consensus 5 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPf---SD-P~aDGp~Iq~a~~~AL~~G~~~~ 80 (267)
T 3vnd_A 5 YQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPF---SD-PLADGPVIQGANLRSLAAGTTSS 80 (267)
T ss_dssp HHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCC---SC-CTTCCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC---CC-CCCCCHHHHHHHHHHHHcCCCHH
Confidence 3556666766665555 568899999999899899999998877788885 22 22221 111111223
Q ss_pred HHHHHHHHHHHhhhhcCcceEEEEecCC-Cc----cHHHH-HHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCC
Q 016855 138 EAQRAINAAHVEVESVENGVGIVKLMGR-YS----GFISM-YATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 211 (381)
Q Consensus 138 ~~~~ai~~l~~tA~S~~~rv~iVEvMGR-~a----G~LAl-~aaLA~~~ad~iliPE~~~~~~~~~~~~~~I~~~~~~~~ 211 (381)
.+.+.+.+++......+ +. +|+= |. |.-.. ..+..+ |+|.+++|-.|+... +.+.+..++.+
T Consensus 81 ~~~~~v~~ir~~~~~~P--iv---lm~Y~npv~~~g~e~f~~~~~~a-Gvdgvii~Dlp~ee~------~~~~~~~~~~g 148 (267)
T 3vnd_A 81 DCFDIITKVRAQHPDMP--IG---LLLYANLVFANGIDEFYTKAQAA-GVDSVLIADVPVEES------APFSKAAKAHG 148 (267)
T ss_dssp HHHHHHHHHHHHCTTCC--EE---EEECHHHHHHHCHHHHHHHHHHH-TCCEEEETTSCGGGC------HHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCC--EE---EEecCcHHHHhhHHHHHHHHHHc-CCCEEEeCCCCHhhH------HHHHHHHHHcC
Confidence 44566666664422222 22 4654 21 32222 222234 799999998887422 34455555555
Q ss_pred ce-EEEEecC
Q 016855 212 HM-VIVVAEG 220 (381)
Q Consensus 212 ~~-iIvVsEG 220 (381)
-. +.+++=.
T Consensus 149 l~~i~liaP~ 158 (267)
T 3vnd_A 149 IAPIFIAPPN 158 (267)
T ss_dssp CEEECEECTT
T ss_pred CeEEEEECCC
Confidence 33 4355433
No 88
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=31.13 E-value=52 Score=28.78 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=24.5
Q ss_pred CCCCchHHHHHHHHHcCCcEEEEE-cCCCcHHHHHHHHHHHHHcCCCceEeeeccc
Q 016855 64 RGGHDTNKIVDNIEDRGINQVYII-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 118 (381)
Q Consensus 64 R~~~~~~~i~~~l~~~~Id~LvvI-GGdgS~~~a~~L~~~~~~~g~~i~vIgIPkT 118 (381)
|.++...+.+++.++.+++.+|.+ |+.+.+-+. ++- ....+|||||-.
T Consensus 51 R~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 51 RTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGM--LAA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp TCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH--HHH-----TCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH--HHh-----ccCCCEEEeeCC
Confidence 333344555555555566655544 233333332 211 235789999964
No 89
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=30.92 E-value=1.1e+02 Score=26.83 Aligned_cols=82 Identities=13% Similarity=0.049 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCC--CCCChHHHHHHHHHHHHHHH
Q 016855 70 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 70 ~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD--~tiGFdTA~~~~~~ai~~l~ 147 (381)
.+.++.|...++|++|+.+.+.... ..+.+.+.+.++| ||. +|++.+..+ .+++.|-. .-...+.+.+.
T Consensus 47 ~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~iP--vV~----i~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~ 117 (271)
T 2dri_A 47 LANVQDLTVRGTKILLINPTDSDAV--GNAVKMANQANIP--VIT----LDRQATKGEVVSHIASDNV-LGGKIAGDYIA 117 (271)
T ss_dssp HHHHHHHTTTTEEEEEECCSSTTTT--HHHHHHHHHTTCC--EEE----ESSCCSSSCCSEEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCCCc--EEE----ecCCCCCCceeEEEecChH-HHHHHHHHHHH
Confidence 4567888889999999987654321 1122334445644 664 455554332 25666532 22233344343
Q ss_pred HhhhhcCcceEEEE
Q 016855 148 VEVESVENGVGIVK 161 (381)
Q Consensus 148 ~tA~S~~~rv~iVE 161 (381)
.....| +++.++-
T Consensus 118 ~~g~g~-~~I~~i~ 130 (271)
T 2dri_A 118 KKAGEG-AKVIELQ 130 (271)
T ss_dssp HHHCTT-CEEEEEE
T ss_pred HHcCCC-CeEEEEE
Confidence 333234 4676664
No 90
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=30.92 E-value=2e+02 Score=25.09 Aligned_cols=80 Identities=8% Similarity=0.100 Sum_probs=42.3
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHH-cCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~-~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~ 147 (381)
....++.|...++|++|+.+.+.+-.. + +.+.+ .++ ++|.+-...+++ . -.++++|-. ..+..+.+.+.
T Consensus 66 ~~~~~~~l~~~~vdgii~~~~~~~~~~---~-~~l~~~~~i--PvV~~~~~~~~~--~-~~~V~~d~~-~~~~~a~~~l~ 135 (296)
T 3brq_A 66 ERQAIQYLLDLRCDAIMIYPRFLSVDE---I-DDIIDAHSQ--PIMVLNRRLRKN--S-SHSVWCDHK-QTSFNAVAELI 135 (296)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSSCHHH---H-HHHHHTCSS--CEEEESCCCSSS--G-GGEECCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEecCCCChHH---H-HHHHhcCCC--CEEEEccccCCC--C-CCEEEEchH-HHHHHHHHHHH
Confidence 345778888899999999988755322 2 33445 564 466553333221 1 125565532 12223333333
Q ss_pred HhhhhcCcceEEEE
Q 016855 148 VEVESVENGVGIVK 161 (381)
Q Consensus 148 ~tA~S~~~rv~iVE 161 (381)
. ..| +++.++-
T Consensus 136 ~--~G~-~~I~~i~ 146 (296)
T 3brq_A 136 N--AGH-QEIAFLT 146 (296)
T ss_dssp H--TTC-CSEEEEC
T ss_pred H--CCC-ceEEEEc
Confidence 2 255 4677664
No 91
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=30.90 E-value=41 Score=29.42 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=27.2
Q ss_pred CCCCchHHHHHHHHHcCCcEEEEE-cCCCcHHHHHHHHHHHHHcCCCceEeeeccc
Q 016855 64 RGGHDTNKIVDNIEDRGINQVYII-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 118 (381)
Q Consensus 64 R~~~~~~~i~~~l~~~~Id~LvvI-GGdgS~~~a~~L~~~~~~~g~~i~vIgIPkT 118 (381)
|.++...+.++..++.+++.+|.+ |+.+.+-+.-. - ....+|||||-.
T Consensus 51 R~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA--~-----~t~~PVIgVPv~ 99 (173)
T 4grd_A 51 RMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLA--A-----KTTVPVLGVPVA 99 (173)
T ss_dssp TSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHH--H-----HCCSCEEEEEEC
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhe--e-----cCCCCEEEEEcC
Confidence 333445555566666666655544 55555555321 1 135679999975
No 92
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=30.89 E-value=78 Score=29.51 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=41.3
Q ss_pred hhhcCCccccccCC---CCchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeec
Q 016855 52 IHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 116 (381)
Q Consensus 52 i~~~GGt~LGtsR~---~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIP 116 (381)
+...|+++.....+ ..++...++.+++.+.|++++.+-+. .+..+.+.+++.|+++++++..
T Consensus 167 l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~ 231 (392)
T 3lkb_A 167 ARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVAG---PVANILKDAKRLGLKMRHLGAH 231 (392)
T ss_dssp HHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHH---HHHHHHHHHHHTTCCCEEEECG
T ss_pred HHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCcc---hHHHHHHHHHHcCCCceEEEec
Confidence 34556666554333 24677888889999999988766432 3344556677789887777643
No 93
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=30.21 E-value=1.2e+02 Score=29.06 Aligned_cols=95 Identities=17% Similarity=0.251 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHHHHHHHhhhhcCcceEEEEecCCCc--cH
Q 016855 92 TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS--GF 169 (381)
Q Consensus 92 S~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~a--G~ 169 (381)
+-..|..|.+++.+.|+++.++.|+ |+.. .=.|.-++...++.+...-.........++|-=+=|-.+ ++
T Consensus 105 G~l~AeiLke~l~~~G~~v~~~~V~-----gL~~---~~~F~~GL~nLv~~v~~~i~~~~~~g~~v~~N~TGGfKaei~y 176 (324)
T 3qyf_A 105 SQLAGEVIRDYLIEEGIRSELVTVK-----TISS---EENFYEGIVDLFDKVIYRILKFKEQDNEVYINATPGLKPESIF 176 (324)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEC-----CCCS---HHHHHHHHHHHHHHTHHHHHHHHHTTCEEEEECSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeeEEEEcC-----CCCc---hHHHHHHHHHHHHHHHHHHHhhccCCceEEEEcCCCcchHHHH
Confidence 3455777888888888765444443 2322 224666776666666544333433233588888888777 88
Q ss_pred HHHHHhhhcCC---------ccEEEcCCCCCCCC
Q 016855 170 ISMYATLASRD---------VDCCLIPESPFYLE 194 (381)
Q Consensus 170 LAl~aaLA~~~---------ad~iliPE~~~~~~ 194 (381)
+++.+.+.+.. -+++-||-.|+.++
T Consensus 177 l~l~g~l~Ga~~v~Yi~E~~~~Li~LP~lPi~ld 210 (324)
T 3qyf_A 177 LTLAGLLAGADLIYYKYQEFNDVVILPSPPITIR 210 (324)
T ss_dssp HHHHHHHTTCCEEEEEETTTTEEEEECCCCEEEC
T ss_pred HHHHHHHcCCCeEEEEEcCCCceEEcCCCCcccC
Confidence 88888877411 24555666677776
No 94
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=29.29 E-value=82 Score=25.01 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecc
Q 016855 70 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 117 (381)
Q Consensus 70 ~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPk 117 (381)
+.+.+.++++++|.+++--++.+......+.+.+.+.|+ +|.-+|.
T Consensus 55 ~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv--~v~~vP~ 100 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHV--EVLTIPN 100 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTC--EEEECCC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCC--eEEECCC
Confidence 446667788999988876666666666778888877775 4777774
No 95
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=29.21 E-value=58 Score=28.34 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCCchHHHHHHHHHcCCcEEEEE-cCCCcHHHHHHHHHHHHHcCCCceEeeeccc
Q 016855 64 RGGHDTNKIVDNIEDRGINQVYII-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 118 (381)
Q Consensus 64 R~~~~~~~i~~~l~~~~Id~LvvI-GGdgS~~~a~~L~~~~~~~g~~i~vIgIPkT 118 (381)
|.++...++.++.++.+++.+|.+ |+.+.+-+. ++- ....+|||||-.
T Consensus 50 R~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~ 98 (170)
T 1xmp_A 50 RTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM--VAA-----KTNLPVIGVPVQ 98 (170)
T ss_dssp TSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--HHT-----TCCSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH--HHh-----ccCCCEEEeeCC
Confidence 333444555555555666655544 333334332 211 235789999975
No 96
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.77 E-value=1e+02 Score=23.65 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=60.4
Q ss_pred chhhcCCccccccCCCCchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCC
Q 016855 51 DIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSF 130 (381)
Q Consensus 51 ~i~~~GGt~LGtsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~ti 130 (381)
.-++-+|..+.|.-+.+|+..|++.++++|---++.+-|- |....+.+..+..+.|... -+-|+-|
T Consensus 22 akhnypgryirtatssqdirdiiksmkdngkplvvfvnga-sqndvnefqneakkegvsy---dvlkstd---------- 87 (112)
T 2lnd_A 22 AKHNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGA-SQNDVNEFQNEAKKEGVSY---DVLKSTD---------- 87 (112)
T ss_dssp HHHHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEECSC-CHHHHHHHHHHHHHHTCEE---EEEECCC----------
T ss_pred hhcCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEecCc-ccccHHHHHHHHHhcCcch---hhhccCC----------
Confidence 3468899999998888899999999999998877777765 5566777877877778642 2334322
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhc
Q 016855 131 GFDTAVEEAQRAINAAHVEVESV 153 (381)
Q Consensus 131 GFdTA~~~~~~ai~~l~~tA~S~ 153 (381)
-+..++-+....-||-|.
T Consensus 88 -----peeltqrvreflktagsl 105 (112)
T 2lnd_A 88 -----PEELTQRVREFLKTAGSL 105 (112)
T ss_dssp -----HHHHHHHHHHHHHHTTSC
T ss_pred -----HHHHHHHHHHHHHhcccc
Confidence 345566666666677663
No 97
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=28.66 E-value=2e+02 Score=25.36 Aligned_cols=77 Identities=12% Similarity=0.207 Sum_probs=43.0
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC-CCCCChH--HHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFD--TAVEEAQRAINA 145 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t-D~tiGFd--TA~~~~~~ai~~ 145 (381)
..+.++.|...++|++|+.+.+.+-.. .+.+.+.++ +||.+ |.+.+.. -.++++| .+...+++.+
T Consensus 61 ~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~i--PvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~~L-- 128 (289)
T 2fep_A 61 ELHLLNTMLGKQVDGIVFMGGNITDEH----VAEFKRSPV--PIVLA----ASVEEQEETPSVAIDYEQAIYDAVKLL-- 128 (289)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHHH----HHHHHHSSS--CEEEE----SCCCTTCCSCEEECCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCHHH----HHHHHhcCC--CEEEE----ccccCCCCCCEEEECcHHHHHHHHHHH--
Confidence 446788888999999999987655322 233344564 46755 3333221 1245555 3444444433
Q ss_pred HHHhhhhcCcceEEEE
Q 016855 146 AHVEVESVENGVGIVK 161 (381)
Q Consensus 146 l~~tA~S~~~rv~iVE 161 (381)
.. ..| +++.++-
T Consensus 129 -~~--~G~-~~I~~i~ 140 (289)
T 2fep_A 129 -VD--KGH-TDIAFVS 140 (289)
T ss_dssp -HH--TTC-SSEEEEE
T ss_pred -HH--CCC-CeEEEEe
Confidence 32 255 4677764
No 98
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=28.03 E-value=2.2e+02 Score=25.01 Aligned_cols=78 Identities=8% Similarity=0.016 Sum_probs=43.8
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC-CCCCChH--HHHHHHHHHHH
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFD--TAVEEAQRAIN 144 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t-D~tiGFd--TA~~~~~~ai~ 144 (381)
...+.++.+...++|++|+.+.+.+-.. .+.+.+.++ ++|.+ |++.+.. -.++++| .+...+++.+
T Consensus 52 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~i--PvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~~L- 120 (287)
T 3bbl_A 52 QIDIYRDLIRSGNVDGFVLSSINYNDPR----VQFLLKQKF--PFVAF----GRSNPDWDFAWVDIDGTAGTRQAVEYL- 120 (287)
T ss_dssp CCHHHHHHHHTTCCSEEEECSCCTTCHH----HHHHHHTTC--CEEEE----SCCSTTCCCCEEEECHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCCEEEEeecCCCcHH----HHHHHhcCC--CEEEE----CCcCCCCCCCEEEeccHHHHHHHHHHH-
Confidence 3456788899999999999987654322 233444564 46655 3333321 1255555 3344444433
Q ss_pred HHHHhhhhcCcceEEEE
Q 016855 145 AAHVEVESVENGVGIVK 161 (381)
Q Consensus 145 ~l~~tA~S~~~rv~iVE 161 (381)
.. ..| +++.++-
T Consensus 121 --~~--~G~-~~I~~i~ 132 (287)
T 3bbl_A 121 --IG--RGH-RRIAILA 132 (287)
T ss_dssp --HH--HTC-CCEEEEE
T ss_pred --HH--CCC-CeEEEEe
Confidence 32 255 4677764
No 99
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=27.71 E-value=88 Score=26.87 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=27.1
Q ss_pred cCCCCchHHHHHHHHHc-CCcEEEEEcC-CCcHHHHHHHHHHHHHcCCCceEeeeccc
Q 016855 63 SRGGHDTNKIVDNIEDR-GINQVYIIGG-DGTQKGAALIYKEVEKRGLQVAVAGIPKT 118 (381)
Q Consensus 63 sR~~~~~~~i~~~l~~~-~Id~LvvIGG-dgS~~~a~~L~~~~~~~g~~i~vIgIPkT 118 (381)
-|.++...+..++.++. +++.+|.+-| .+.+-+. ++- ....+|||||-.
T Consensus 40 HR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~ 90 (159)
T 3rg8_A 40 HKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGF--VDG-----FVKGATIACPPP 90 (159)
T ss_dssp TTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHH--HHH-----HSSSCEEECCCC
T ss_pred cCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHH--HHh-----ccCCCEEEeeCC
Confidence 34444555666666654 5777666644 3334332 221 135779999954
No 100
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=27.37 E-value=2.7e+02 Score=24.18 Aligned_cols=76 Identities=11% Similarity=0.107 Sum_probs=42.4
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHH-cCCCceEeeeccccccCccCCC--CCCChH--HHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-RGLQVAVAGIPKTIDNDIAVID--KSFGFD--TAVEEAQRAI 143 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~-~g~~i~vIgIPkTIDNDi~~tD--~tiGFd--TA~~~~~~ai 143 (381)
..+.++.|...++|++|+.+.+.+-... +.+.+ .+ +++|.+ |++.+..+ .++++| .+...+++.
T Consensus 52 ~~~~~~~l~~~~vdgii~~~~~~~~~~~----~~l~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~~~~~~~~~~~- 120 (289)
T 1dbq_A 52 QRAYLSMMAQKRVDGLLVMCSEYPEPLL----AMLEEYRH--IPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGRY- 120 (289)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCCCHHHH----HHHHHTTT--SCEEEE----ECSSCCSSSCEEEEECHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCCEEEEEeccCCHHHH----HHHHhccC--CCEEEE----ccCCCccCcCCEEEeCcHHHHHHHHHH-
Confidence 4456888889999999999987653222 22323 35 456754 44443322 256655 334444443
Q ss_pred HHHHHhhhhcCcceEEE
Q 016855 144 NAAHVEVESVENGVGIV 160 (381)
Q Consensus 144 ~~l~~tA~S~~~rv~iV 160 (381)
+.. ..| +++.++
T Consensus 121 --L~~--~G~-~~i~~i 132 (289)
T 1dbq_A 121 --LIE--RGH-REIGVI 132 (289)
T ss_dssp --HHH--TTC-CSEEEE
T ss_pred --HHH--CCC-CeEEEE
Confidence 332 255 467666
No 101
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=26.06 E-value=1.1e+02 Score=27.04 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=38.3
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHH--HHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAINAA 146 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdT--A~~~~~~ai~~l 146 (381)
..+.++.+...++|++|+.+.+.+-. ..+.+.+.+ +++|.+-...+++ -.++++|- +...+++ .+
T Consensus 54 ~~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~~--iPvV~~~~~~~~~----~~~V~~D~~~~g~~a~~---~L 120 (290)
T 3clk_A 54 QKHALLTAIERPVMGILLLSIALTDD----NLQLLQSSD--VPYCFLSMGFDDD----RPFISSDDEDIGYQATN---LL 120 (290)
T ss_dssp --CHHHHHHSSCCSEEEEESCC--------CHHHHHCC----CEEEESCC--CC----SCEEECCHHHHHHHHHH---HH
T ss_pred HHHHHHHHHhcCCCEEEEecccCCHH----HHHHHHhCC--CCEEEEcCCCCCC----CCEEEeChHHHHHHHHH---HH
Confidence 34567888889999999998775421 223344445 4577654433332 22455553 3333333 33
Q ss_pred HHhhhhcCcceEEEE
Q 016855 147 HVEVESVENGVGIVK 161 (381)
Q Consensus 147 ~~tA~S~~~rv~iVE 161 (381)
.. ..| +++.++-
T Consensus 121 ~~--~G~-~~i~~i~ 132 (290)
T 3clk_A 121 IN--EGH-RQIGIAG 132 (290)
T ss_dssp HT--TTC-CSEEEES
T ss_pred HH--cCC-CEEEEEe
Confidence 32 255 4676663
No 102
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=25.98 E-value=72 Score=28.08 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=22.0
Q ss_pred chHHHHHHHHHcCCcEEEEE-cCCCcHHHHHHHHHHHHHcCCCceEeeeccc
Q 016855 68 DTNKIVDNIEDRGINQVYII-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 118 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvI-GGdgS~~~a~~L~~~~~~~g~~i~vIgIPkT 118 (381)
...++.++.++.+++.+|.+ |+.+.+-+. ++- ....+|||||-.
T Consensus 64 ~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~ 108 (182)
T 1u11_A 64 RLADYARTAAERGLNVIIAGAGGAAHLPGM--CAA-----WTRLPVLGVPVE 108 (182)
T ss_dssp HHHHHHHHTTTTTCCEEEEEEESSCCHHHH--HHH-----HCSSCEEEEEEC
T ss_pred HHHHHHHHHHhCCCcEEEEecCchhhhHHH--HHh-----ccCCCEEEeeCC
Confidence 34444444445556654443 333334332 111 135679999975
No 103
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=25.69 E-value=2.9e+02 Score=24.90 Aligned_cols=77 Identities=9% Similarity=0.087 Sum_probs=41.8
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCC-CCCCChH--HHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFD--TAVEEAQRAINA 145 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~t-D~tiGFd--TA~~~~~~ai~~ 145 (381)
....++.|...++|++|+.+.+.+-... +.+.+.+++ +|.+ |.+.+.. -.++++| .+...+++.
T Consensus 108 ~~~~~~~l~~~~vdgiI~~~~~~~~~~~----~~l~~~~iP--vV~~----~~~~~~~~~~~V~~D~~~~~~~a~~~--- 174 (332)
T 2o20_A 108 EEKVLETFLSKQVDGIVYMGSSLDEKIR----TSLKNSRTP--VVLV----GTIDGDKEIPSVNIDYHLAAYQSTKK--- 174 (332)
T ss_dssp HHHHHHHHHHTTCSEEEECSSCCCHHHH----HHHHHHCCC--EEEE----SCCCTTSCSCEEECCHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCHHHH----HHHHhCCCC--EEEE----ccccCCCCCCEEEeChHHHHHHHHHH---
Confidence 3457788889999999999876553222 333344654 6655 3333221 1245554 233333333
Q ss_pred HHHhhhhcCcceEEEE
Q 016855 146 AHVEVESVENGVGIVK 161 (381)
Q Consensus 146 l~~tA~S~~~rv~iVE 161 (381)
+.. ..| +++.++-
T Consensus 175 L~~--~G~-~~I~~i~ 187 (332)
T 2o20_A 175 LID--SGN-KKIAYIM 187 (332)
T ss_dssp HHH--TTC-SSEEEEC
T ss_pred HHH--CCC-CeEEEEe
Confidence 332 256 4677763
No 104
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=25.41 E-value=22 Score=30.05 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=38.7
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccC
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 125 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~ 125 (381)
+.+.+++.|++.+.+-+++|||-.-++.+..+.+ .+.+--+|..++.|...
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~F 131 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTYY 131 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEEC
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEEC
Confidence 5788889999888888999999776666554322 36677889998877644
No 105
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=25.32 E-value=76 Score=27.51 Aligned_cols=86 Identities=13% Similarity=0.212 Sum_probs=44.4
Q ss_pred CCCCchHHHHHHHHHcCCcEEEEEc-CCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHH
Q 016855 64 RGGHDTNKIVDNIEDRGINQVYIIG-GDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA 142 (381)
Q Consensus 64 R~~~~~~~i~~~l~~~~Id~LvvIG-GdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~a 142 (381)
|.++...+.++++++.+++.+|.+- +.+.+-+. ++- ....+|||||-... ++. |
T Consensus 44 Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~~~-~l~------G----------- 98 (166)
T 3oow_A 44 RTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGM--VAA-----KTTLPVLGVPVKSS-TLN------G----------- 98 (166)
T ss_dssp TCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH--HHH-----TCSSCEEEEECCCT-TTT------T-----------
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHH--HHh-----ccCCCEEEeecCcC-CCC------C-----------
Confidence 4444455556666666777666553 34444443 221 23578999996432 221 2
Q ss_pred HHHHHHhhhhcCc-ceEEEEec---CCCccHHHHHH
Q 016855 143 INAAHVEVESVEN-GVGIVKLM---GRYSGFISMYA 174 (381)
Q Consensus 143 i~~l~~tA~S~~~-rv~iVEvM---GR~aG~LAl~a 174 (381)
+|.+.+...+... .|..|=+- |.+++++|+..
T Consensus 99 ~dsLlS~vqmp~gvpVatV~I~~ag~~nAa~lAa~I 134 (166)
T 3oow_A 99 QDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASI 134 (166)
T ss_dssp HHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHH
Confidence 3344444444321 24555443 56777777543
No 106
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=24.88 E-value=51 Score=25.84 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=28.1
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeec
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 116 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIP 116 (381)
.+.|++..+++++| ||++|-.|. ..+.++.+. .+++|+.||
T Consensus 98 ~~~I~~~a~~~~~d-liV~G~~g~-sv~~~vl~~-----a~~PVlvv~ 138 (138)
T 1q77_A 98 SEEVKKFVEGKGYE-LVVWACYPS-AYLCKVIDG-----LNLASLIVK 138 (138)
T ss_dssp HHHHHHHHTTSCCS-EEEECSCCG-GGTHHHHHH-----SSSEEEECC
T ss_pred HHHHHHHHHhcCCC-EEEEeCCCC-chHHHHHHh-----CCCceEeeC
Confidence 56778888888888 778888876 445555432 246677665
No 107
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=24.80 E-value=62 Score=29.87 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=34.0
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCceEEEEecCC
Q 016855 169 FISMYATLASRDVDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVAEGA 221 (381)
Q Consensus 169 ~LAl~aaLA~~~ad~iliPE~~~~~~--~~~~~~~~I~~~~~~~~~~iIvVsEG~ 221 (381)
-+|++.||+. .|+++++=|---.+| ....+.+.+++-.++.+..||+++--.
T Consensus 151 Rv~iAraL~~-~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl 204 (275)
T 3gfo_A 151 RVAIAGVLVM-EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI 204 (275)
T ss_dssp HHHHHHHHTT-CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC
T ss_pred HHHHHHHHHc-CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH
Confidence 6899999999 799999976544444 223455555543223466777777554
No 108
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=24.70 E-value=75 Score=27.96 Aligned_cols=49 Identities=24% Similarity=0.366 Sum_probs=28.7
Q ss_pred CCCCchHHHHHHHHHcCCcEEEEE-cCCCcHHHHHHHHHHHHHcCCCceEeeecccc
Q 016855 64 RGGHDTNKIVDNIEDRGINQVYII-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 119 (381)
Q Consensus 64 R~~~~~~~i~~~l~~~~Id~LvvI-GGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTI 119 (381)
|.++...+++++.++.+++.+|.+ |+.+.+-+. ++- ....+|||||-..
T Consensus 52 R~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~~ 101 (183)
T 1o4v_A 52 RTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGM--VAS-----ITHLPVIGVPVKT 101 (183)
T ss_dssp TCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--HHH-----HCSSCEEEEEECC
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEecCcccccHHH--HHh-----ccCCCEEEeeCCC
Confidence 444455666666666777766554 444445443 221 1357799999755
No 109
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=24.40 E-value=1.1e+02 Score=27.08 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=50.5
Q ss_pred CEEEEEccchhhhhcC---------CeEeCChhhHhchhhcCCccccccCCC--CchHHHHHHHHHcCCcEEEEEcCCCc
Q 016855 24 NSLIEFQGGYRGFYSK---------NTLTLSPKVVNDIHKRGGTILRTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGT 92 (381)
Q Consensus 24 ~~V~G~~~G~~GL~~~---------~~~~L~~~~v~~i~~~GGt~LGtsR~~--~~~~~i~~~l~~~~Id~LvvIGGdgS 92 (381)
.-++|+-.|..=|++. |+=.++.+..+.+...+ .++-....+ -|.+++++.+.+++.+-++++|+-|.
T Consensus 23 ~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga~Gg 101 (212)
T 3l8m_A 23 EHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGATGG 101 (212)
T ss_dssp SEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHHTTCCEEEEESCSSS
T ss_pred CEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 6789999999888764 34456666666676666 666544332 37999999999999999999999987
No 110
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.35 E-value=2.4e+02 Score=21.52 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=35.5
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeecc
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 117 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPk 117 (381)
..+++.+.+++.... ||+|-.|.+-..-.+|...+.++++| ++..+.
T Consensus 19 G~~~v~kai~~gka~-lViiA~D~~~~~~~~i~~~c~~~~ip--~~~~~~ 65 (99)
T 3j21_Z 19 GSNETIRLAKTGGAK-LIIVAKNAPKEIKDDIYYYAKLSDIP--VYEFEG 65 (99)
T ss_dssp SHHHHHHHHHHTCCS-EEEEECCCCHHHHHHHHHHHHHTTCC--EEEECC
T ss_pred CHHHHHHHHHcCCcc-EEEEeCCCCHHHHHHHHHHHHHcCCC--EEEeCC
Confidence 477888888887654 78888899988888887777776644 655544
No 111
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=23.64 E-value=74 Score=30.02 Aligned_cols=24 Identities=13% Similarity=0.512 Sum_probs=18.0
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCC
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGD 90 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGd 90 (381)
...+..+..++..||+.++++.||
T Consensus 86 ~~l~~~L~~~~~~GI~niLaLrGD 109 (310)
T 3apt_A 86 KEVAEVLHRFVESGVENLLALRGD 109 (310)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCC
Confidence 346667777778888888888887
No 112
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=23.27 E-value=2.7e+02 Score=23.17 Aligned_cols=104 Identities=11% Similarity=0.101 Sum_probs=57.4
Q ss_pred CCeEeCChhhHhchhhcCCc---cccccCCCCchHHHHHHHHHcCCcEEEEEcCCC-cHHHHHHHHHHHHHcCC-Cce--
Q 016855 39 KNTLTLSPKVVNDIHKRGGT---ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG-TQKGAALIYKEVEKRGL-QVA-- 111 (381)
Q Consensus 39 ~~~~~L~~~~v~~i~~~GGt---~LGtsR~~~~~~~i~~~l~~~~Id~LvvIGGdg-S~~~a~~L~~~~~~~g~-~i~-- 111 (381)
++..++-...+..+....|- .||..- ..+.+++..++++.|.+.+-.=.+ ++..+..+.+.+++.+. +++
T Consensus 28 gd~HdiG~~~va~~l~~~G~eVi~lG~~~---p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~ 104 (161)
T 2yxb_A 28 LDGHDRGAKVVARALRDAGFEVVYTGLRQ---TPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVV 104 (161)
T ss_dssp SSSCCHHHHHHHHHHHHTTCEEECCCSBC---CHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred CCccHHHHHHHHHHHHHCCCEEEECCCCC---CHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEE
Confidence 34445555555555555552 455432 356778888888888776665443 35556677777777653 233
Q ss_pred EeeeccccccC---ccCCCC--CCCh--HHHHHHHHHHHHH
Q 016855 112 VAGIPKTIDND---IAVIDK--SFGF--DTAVEEAQRAINA 145 (381)
Q Consensus 112 vIgIPkTIDND---i~~tD~--tiGF--dTA~~~~~~ai~~ 145 (381)
|-|.|-+-|=+ -.+.|. ++|- ..|++.+.+.+..
T Consensus 105 vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~ 145 (161)
T 2yxb_A 105 LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEE 145 (161)
T ss_dssp EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHH
Confidence 33443332211 145563 4444 2477777666655
No 113
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=23.26 E-value=56 Score=27.18 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=17.1
Q ss_pred HHHHHHHHcCCCceEeeeccccccC
Q 016855 98 LIYKEVEKRGLQVAVAGIPKTIDND 122 (381)
Q Consensus 98 ~L~~~~~~~g~~i~vIgIPkTIDND 122 (381)
.|.+.+.+++...-|||.|+++|+.
T Consensus 44 ~l~~li~e~~v~~iVvGlP~~mdGt 68 (138)
T 1nu0_A 44 IIERLLKEWQPDEIIVGLPLNMDGT 68 (138)
T ss_dssp HHHHHHHHHCCSEEEEEEEECTTSC
T ss_pred HHHHHHHHcCCCEEEEecccCCCcC
Confidence 3444444556666699999999873
No 114
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=23.17 E-value=30 Score=29.18 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=35.9
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCC--CceEeeecccccc
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL--QVAVAGIPKTIDN 121 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~--~i~vIgIPkTIDN 121 (381)
.+.+.+++.|++.+++-++++||-.-+..+.. .|+ .+.+.-+|+.+-+
T Consensus 80 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~-------~~lvDel~l~~~p~~lG~ 129 (168)
T 1cz3_A 80 GSPADVVKFLEGKGYERVAVIGGKTVFTEFLR-------EKLVDELFVTVEPYVFGK 129 (168)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEECHHHHHHHHH-------TTCCSEEEEEECSEEESS
T ss_pred CCHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-------CCCCCEEEEEEeceecCC
Confidence 36889999999999999999999766554433 232 4667888988754
No 115
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=23.15 E-value=2.6e+02 Score=25.12 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=43.5
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcH-HHHHHHHHHHHHcCCCceEeeeccccccCccC--CCCCC-ChHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQ-KGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSF-GFDTAVEEAQRAIN 144 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~-~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~--tD~ti-GFdTA~~~~~~ai~ 144 (381)
....++.|...++|+||+..-+.+. ... + +.+.+.| ++||.+ |.+++. .+..+ ++|-. .....+.+
T Consensus 49 q~~~i~~li~~~vdgiii~~~~~~~~~~~--~-~~a~~~g--ipvV~~----d~~~~~~~~~~~v~~~D~~-~~g~~~~~ 118 (316)
T 1tjy_A 49 QVQLVNNFVNQGYDAIIVSAVSPDGLCPA--L-KRAMQRG--VKILTW----DSDTKPECRSYYINQGTPK-QLGSMLVE 118 (316)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSSSTTHHH--H-HHHHHTT--CEEEEE----SSCCCGGGCSEEEESCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHHHHH--H-HHHHHCc--CEEEEe----cCCCCCCCceEEEecCCHH-HHHHHHHH
Confidence 3456788889999999998877652 222 2 3334456 557765 444332 23345 66632 22233333
Q ss_pred HHHHhh-hhcCcceEEEE
Q 016855 145 AAHVEV-ESVENGVGIVK 161 (381)
Q Consensus 145 ~l~~tA-~S~~~rv~iVE 161 (381)
.+.... ..| +++.++.
T Consensus 119 ~L~~~~~~g~-~~i~~i~ 135 (316)
T 1tjy_A 119 MAAHQVDKEK-AKVAFFY 135 (316)
T ss_dssp HHHHHHCSSS-EEEEEEE
T ss_pred HHHHHcCCCC-CEEEEEE
Confidence 333222 145 4566664
No 116
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=22.88 E-value=3.8e+02 Score=23.30 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=26.5
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
..+.++.|...++|++|+.+.+.+... ...+.+.+.++ ++|.+
T Consensus 47 ~~~~~~~l~~~~vdgiI~~~~~~~~~~--~~~~~~~~~~i--PvV~~ 89 (290)
T 2fn9_A 47 ESAHFDAIIAAGYDAIIFNPTDADGSI--ANVKRAKEAGI--PVFCV 89 (290)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCTTTTH--HHHHHHHHTTC--CEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecCChHHHH--HHHHHHHHCCC--eEEEE
Confidence 345678888899999999987654211 12233444564 46654
No 117
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Probab=22.81 E-value=1.4e+02 Score=26.22 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhcCcceEEEEecCCCc-cHHHHHHhh
Q 016855 131 GFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS-GFISMYATL 176 (381)
Q Consensus 131 GFdTA~~~~~~ai~~l~~tA~S~~~rv~iVEvMGR~a-G~LAl~aaL 176 (381)
-|+++++-+..+++.+...+.. ..+++ +||.++ |+||+..++
T Consensus 73 ~~p~~~~D~~~al~~l~~~~~~-~~~i~---l~G~SaGG~lA~~~a~ 115 (274)
T 2qru_A 73 KIDHILRTLTETFQLLNEEIIQ-NQSFG---LCGRSAGGYLMLQLTK 115 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT-TCCEE---EEEETHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcccc-CCcEE---EEEECHHHHHHHHHHH
Confidence 7899999999999999877653 34554 588888 699998887
No 118
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=22.45 E-value=2e+02 Score=25.81 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=34.6
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccC---CCCCCChH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV---IDKSFGFD 133 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~---tD~tiGFd 133 (381)
..+.++.+...++|++|+.+-+..... ...+.+.+.| ++||.+ |++++. .+.++++|
T Consensus 48 ~~~~i~~~~~~~vdgiIi~~~~~~~~~--~~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~V~~D 107 (330)
T 3uug_A 48 QLSQIENMVTKGVKVLVIASIDGTTLS--DVLKQAGEQG--IKVIAY----DRLIRNSGDVSYYATFD 107 (330)
T ss_dssp HHHHHHHHHHHTCSEEEECCSSGGGGH--HHHHHHHHTT--CEEEEE----SSCCCSCTTCCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEcCCchhHH--HHHHHHHHCC--CCEEEE----CCCCCCCCceeEEEEeC
Confidence 456788888899999999988753211 1223344556 457754 555543 23466655
No 119
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=22.43 E-value=87 Score=29.55 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHcCCcEEEEEcCCCc------HHHHHHHHHHHHHc-CCCceEeeec
Q 016855 67 HDTNKIVDNIEDRGINQVYIIGGDGT------QKGAALIYKEVEKR-GLQVAVAGIP 116 (381)
Q Consensus 67 ~~~~~i~~~l~~~~Id~LvvIGGdgS------~~~a~~L~~~~~~~-g~~i~vIgIP 116 (381)
...+..+..+...||+.++++.||-. +..|..|.+.+++. ++.|.|.+-|
T Consensus 97 ~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 97 DELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Confidence 45777888889999999999998843 44466676666543 3444444444
No 120
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=22.20 E-value=1.6e+02 Score=25.40 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=32.7
Q ss_pred chHHHHHHHHHcC---CcE--EEEEcCCCc--HHHHHHHHHHHHHcCCCceEeeecc
Q 016855 68 DTNKIVDNIEDRG---INQ--VYIIGGDGT--QKGAALIYKEVEKRGLQVAVAGIPK 117 (381)
Q Consensus 68 ~~~~i~~~l~~~~---Id~--LvvIGGdgS--~~~a~~L~~~~~~~g~~i~vIgIPk 117 (381)
..+.+.+.|++.. -.. ++++.|+.+ -.....+++.+++.|+.+.+|++=.
T Consensus 89 aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~ 145 (192)
T 2x5n_A 89 GIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGE 145 (192)
T ss_dssp HHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESC
T ss_pred HHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCC
Confidence 4666777777643 222 666666553 3455667778888898888888743
No 121
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=21.95 E-value=27 Score=31.16 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=41.9
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccC-ccCCCCCCChHHHHHHHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND-IAVIDKSFGFDTAVEEAQRAINAAH 147 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDND-i~~tD~tiGFdTA~~~~~~ai~~l~ 147 (381)
..+.++.|...++|++|+.+ ..+ +.+.+.+ +++|. +|++ ++..+.++++|- ...+..+.+.+.
T Consensus 56 ~~~~~~~l~~~~vdgiIi~~--~~~-------~~~~~~~--iPvV~----~~~~~~~~~~~~V~~D~-~~~g~~a~~~L~ 119 (277)
T 3hs3_A 56 YQNAIINFENNNVDGIITSA--FTI-------PPNFHLN--TPLVM----YDSANINDDIVRIVSNN-TKGGKESIKLLS 119 (277)
T ss_dssp HHHHHHHHHHTTCSEEEEEC--CCC-------CTTCCCS--SCEEE----ESCCCCCSSSEEEEECH-HHHHHHHHHTSC
T ss_pred HHHHHHHHHhCCCCEEEEcc--hHH-------HHHHhCC--CCEEE----EcccccCCCCEEEEECh-HHHHHHHHHHHH
Confidence 45678889999999999998 111 1222334 45664 4665 544333666663 223344444444
Q ss_pred HhhhhcCcceEEEE
Q 016855 148 VEVESVENGVGIVK 161 (381)
Q Consensus 148 ~tA~S~~~rv~iVE 161 (381)
..| +++.++-
T Consensus 120 ---~G~-~~I~~i~ 129 (277)
T 3hs3_A 120 ---KKI-EKVLIQH 129 (277)
T ss_dssp ---TTC-CEEEEEE
T ss_pred ---hCC-CEEEEEe
Confidence 566 4677664
No 122
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=21.48 E-value=1.1e+02 Score=26.48 Aligned_cols=29 Identities=38% Similarity=0.526 Sum_probs=20.5
Q ss_pred cCCCcHH--HHHHHHHHHHHcCCCceEeeec
Q 016855 88 GGDGTQK--GAALIYKEVEKRGLQVAVAGIP 116 (381)
Q Consensus 88 GGdgS~~--~a~~L~~~~~~~g~~i~vIgIP 116 (381)
|.|||=+ .+..|++.+.++|+++.+.-=|
T Consensus 7 G~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 7 GIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 8899854 4678899998888774333334
No 123
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=21.31 E-value=1.2e+02 Score=26.66 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=33.4
Q ss_pred HHHHHHhhhcCCccEEEcCCCCC--CCCChhhHHHHHHHHHHhCCceEEEEecCC
Q 016855 169 FISMYATLASRDVDCCLIPESPF--YLEGPGGLFEFIERQLKENGHMVIVVAEGA 221 (381)
Q Consensus 169 ~LAl~aaLA~~~ad~iliPE~~~--~~~~~~~~~~~I~~~~~~~~~~iIvVsEG~ 221 (381)
-++++.||+. .|+++++=|--- |.+....+.+.+++. .+.+..||+++--.
T Consensus 141 rv~laraL~~-~p~lllLDEPts~LD~~~~~~l~~~l~~~-~~~g~tiiivtHd~ 193 (214)
T 1sgw_A 141 RVQLASTLLV-NAEIYVLDDPVVAIDEDSKHKVLKSILEI-LKEKGIVIISSREE 193 (214)
T ss_dssp HHHHHHHTTS-CCSEEEEESTTTTSCTTTHHHHHHHHHHH-HHHHSEEEEEESSC
T ss_pred HHHHHHHHHh-CCCEEEEECCCcCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCH
Confidence 5788889998 799999877543 444444566666543 33356777777543
No 124
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=21.18 E-value=1.4e+02 Score=27.30 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=39.8
Q ss_pred hhhcCCccccccCC---CCchHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEee
Q 016855 52 IHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 114 (381)
Q Consensus 52 i~~~GGt~LGtsR~---~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIg 114 (381)
+...|+.+...... ..++...++.+++.+.|++++.+-+. .+..+.+.+++.|+++++++
T Consensus 165 ~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~---~a~~~~~~~~~~g~~~~~i~ 227 (364)
T 3lop_A 165 LKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGATAE---PAAQFVRQYRARGGEAQLLG 227 (364)
T ss_dssp HHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCHH---HHHHHHHHHHHTTCCCEEEE
T ss_pred HHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCcH---HHHHHHHHHHHcCCCCeEEE
Confidence 44566666554332 34678888999999999988866332 33445566777888766554
No 125
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=20.99 E-value=1.2e+02 Score=28.10 Aligned_cols=52 Identities=17% Similarity=0.290 Sum_probs=27.2
Q ss_pred hHHHHHHHHHcCCcEEEEEcCC-----C--cHHHHHHHHHHHHHcCCCceEeeecccccc
Q 016855 69 TNKIVDNIEDRGINQVYIIGGD-----G--TQKGAALIYKEVEKRGLQVAVAGIPKTIDN 121 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGd-----g--S~~~a~~L~~~~~~~g~~i~vIgIPkTIDN 121 (381)
.+++++.+++.++| +|++.|| + +......+.+.+.+..-.++|+.||.-=|.
T Consensus 50 l~~lv~~~~~~~~D-~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~~pv~~i~GNHD~ 108 (336)
T 2q8u_A 50 LDKVVEEAEKREVD-LILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHDW 108 (336)
T ss_dssp HHHHHHHHHHHTCS-EEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHHSCEEECCC----
T ss_pred HHHHHHHHHHhCCC-EEEECCccccCCCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCc
Confidence 67888889999999 5566666 2 222212222322221100468888886543
No 126
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=20.87 E-value=2.8e+02 Score=21.11 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=34.7
Q ss_pred chHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeec
Q 016855 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 116 (381)
Q Consensus 68 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIP 116 (381)
..+++.+.+++... .||+|-.|.+-.....|-..+.++++| ++.++
T Consensus 20 G~~~v~kai~~gka-~lViiA~D~~~~~~~~l~~~c~~~~vp--~~~~~ 65 (101)
T 1w41_A 20 GARKSIQYAKMGGA-KLIIVARNARPDIKEDIEYYARLSGIP--VYEFE 65 (101)
T ss_dssp SHHHHHHHHHHTCC-SEEEEETTSCHHHHHHHHHHHHHHTCC--EEEES
T ss_pred CHHHHHHHHHcCCC-cEEEEeCCCCHHHHHHHHHHHHhcCCC--EEEec
Confidence 46788888887665 488888889988888888777777754 55543
No 127
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=20.72 E-value=3.9e+02 Score=27.04 Aligned_cols=85 Identities=20% Similarity=0.292 Sum_probs=64.3
Q ss_pred hHHHHHHHHHcCCcEEEEE--------cCCC--cHHHHHHHHHHHHHcCCCceEe--------------eec--------
Q 016855 69 TNKIVDNIEDRGINQVYII--------GGDG--TQKGAALIYKEVEKRGLQVAVA--------------GIP-------- 116 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvI--------GGdg--S~~~a~~L~~~~~~~g~~i~vI--------------gIP-------- 116 (381)
++.-++.||..|++++.+= -|.+ -..+=.+|++..++.|+++++| .||
T Consensus 36 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~~ 115 (498)
T 1fa2_A 36 VEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQI 115 (498)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCCTTCCCCBCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHHh
Confidence 4555788999999998762 2333 3556678888888999988777 455
Q ss_pred cccccCccCCCC---------CCChH--------HHHHHHHHHHHHHHHhhhhc
Q 016855 117 KTIDNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESV 153 (381)
Q Consensus 117 kTIDNDi~~tD~---------tiGFd--------TA~~~~~~ai~~l~~tA~S~ 153 (381)
..=|.||..||. |+|.| |+++...+.....++.-.+.
T Consensus 116 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~ 169 (498)
T 1fa2_A 116 GDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADF 169 (498)
T ss_dssp TTTCGGGEEECTTCCEEEEEECGGGTTCEEETTEEHHHHHHHHHHHHHHHSHHH
T ss_pred hccCCCceEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 234568998885 88888 88999999999988877664
No 128
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=20.45 E-value=1.6e+02 Score=26.51 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=33.0
Q ss_pred HHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCceEEEEecC
Q 016855 169 FISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 220 (381)
Q Consensus 169 ~LAl~aaLA~~~ad~iliPE~~~~~~~--~~~~~~~I~~~~~~~~~~iIvVsEG 220 (381)
-++++.||+. .|+++++=|---.+|. ...+.+.+++..++.+..+|+++--
T Consensus 136 rv~lAraL~~-~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 136 LILIARAIAS-ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp HHHHHHHHHT-TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred HHHHHHHHHc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 6899999999 7999999876444542 2234455544323336677777643
No 129
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=20.32 E-value=1.5e+02 Score=26.36 Aligned_cols=43 Identities=7% Similarity=-0.005 Sum_probs=27.7
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeee
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgI 115 (381)
..+.++.|...++|++|+.+-+..... ...+.+.+.|++ ||.+
T Consensus 50 ~~~~i~~l~~~~vdgiii~~~~~~~~~--~~~~~~~~~giP--vV~~ 92 (297)
T 3rot_A 50 QVQFIESALATYPSGIATTIPSDTAFS--KSLQRANKLNIP--VIAV 92 (297)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCSSTTH--HHHHHHHHHTCC--EEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHHH--HHHHHHHHCCCC--EEEE
Confidence 456788888999999999887765211 122334445654 6654
No 130
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=20.18 E-value=5.6e+02 Score=24.25 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=39.9
Q ss_pred CchHHHHHHHHH---cCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceEeeeccccccCccCCCCCCChHHHHHHHHHHH
Q 016855 67 HDTNKIVDNIED---RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 143 (381)
Q Consensus 67 ~~~~~i~~~l~~---~~Id~LvvIGGdgS~~~a~~L~~~~~~~g~~i~vIgIPkTIDNDi~~tD~tiGFdTA~~~~~~ai 143 (381)
+++.++.+.+++ .+.|++|+.=|-|||.-...+..... +.+.+||-.=.=.--|.+.+| |......|+
T Consensus 72 ~~~~~la~~i~~~~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlTGa~rp~~~~~sD-------g~~NL~~Av 142 (334)
T 3nxk_A 72 EIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAYFLNLTI--KSDKPVVLVGAMRPSTAISAD-------GPKNLYNAV 142 (334)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEECCSSCTTSTTCS-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEECCCchHHHHHHHHHHHc--CCCCCEEEECCCCCCCCCCch-------HHHHHHHHH
Confidence 355555555554 48999999999999965444434332 333445544322223344555 445555555
Q ss_pred HHH
Q 016855 144 NAA 146 (381)
Q Consensus 144 ~~l 146 (381)
.-.
T Consensus 143 ~~A 145 (334)
T 3nxk_A 143 ALV 145 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 131
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=20.01 E-value=4.1e+02 Score=23.94 Aligned_cols=76 Identities=11% Similarity=0.124 Sum_probs=42.2
Q ss_pred hHHHHHHHHHcCCcEEEEEcCCCcHHHHHHHHHHHHH-cCCCceEeeeccccccCccCCC--CCCChH--HHHHHHHHHH
Q 016855 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-RGLQVAVAGIPKTIDNDIAVID--KSFGFD--TAVEEAQRAI 143 (381)
Q Consensus 69 ~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~-~g~~i~vIgIPkTIDNDi~~tD--~tiGFd--TA~~~~~~ai 143 (381)
..+.++.|...++|++|+.+.+.+-... +.+.+ .+ +++|.+ |++.+..+ .++++| .+...+++.+
T Consensus 103 ~~~~~~~l~~~~vdgiI~~~~~~~~~~~----~~l~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~~~~a~~~L 172 (340)
T 1qpz_A 103 QRAYLSMMAQKRVDGLLVMCSEYPEPLL----AMLEEYRH--IPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGRYL 172 (340)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHHHH----HHHHTTTT--SCEEEE----EESSCCCSSSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHhhCC--CCEEEE----ecccCCCCCCCEEEECHHHHHHHHHHHH
Confidence 3456888889999999999877553222 22222 34 446654 44444322 256665 3333444333
Q ss_pred HHHHHhhhhcCcceEEE
Q 016855 144 NAAHVEVESVENGVGIV 160 (381)
Q Consensus 144 ~~l~~tA~S~~~rv~iV 160 (381)
.. ..| +++.++
T Consensus 173 ---~~--~G~-~~I~~i 183 (340)
T 1qpz_A 173 ---IE--RGH-REIGVI 183 (340)
T ss_dssp ---HH--HTC-CCEEEE
T ss_pred ---HH--CCC-CEEEEE
Confidence 32 256 467776
Done!