RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016855
(381 letters)
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 731 bits (1890), Expect = 0.0
Identities = 275/348 (79%), Positives = 314/348 (90%), Gaps = 4/348 (1%)
Query: 21 LHH----NSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNI 76
L + ++ GGYRGFYS+NT+ L+PKVVNDIHKRGGTIL TSRGGHDT+KIVD+I
Sbjct: 113 LSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSI 172
Query: 77 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 136
+DRGINQVYIIGGDGTQKGA++IY+E+ +RGL+VAVAGIPKTIDNDI VIDKSFGFDTAV
Sbjct: 173 QDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 232
Query: 137 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGP 196
EEAQRAINAAHVE ESVENG+G+VKLMGRYSGFI+MYATLASRDVDCCLIPESPFYLEG
Sbjct: 233 EEAQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGK 292
Query: 197 GGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIK 256
GGLFEFIE++LKENGHMVIVVAEGAGQ+ +A+SM + D +DASGN+LLLD+GLWL+QKIK
Sbjct: 293 GGLFEFIEKRLKENGHMVIVVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIK 352
Query: 257 DHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS 316
DHFTKV+KM IN+KYIDPTYMIRAIPSN SDN+YCTLLAHSAVHGAMAG+TGFTVGPVN
Sbjct: 353 DHFTKVKKMPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNG 412
Query: 317 RHAYIPIARVTETQKTVKLTDRMWARLLASTNQPSFLNCSEVLHHQEK 364
RHAYIP R+TE Q V +TDRMWARLL+STNQPSFL+ +VL + +
Sbjct: 413 RHAYIPFYRITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAKRE 460
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 451 bits (1162), Expect = e-158
Identities = 174/344 (50%), Positives = 233/344 (67%), Gaps = 12/344 (3%)
Query: 18 VKHLHHN----SLIEFQGGYRGF---YSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 70
V LHH+ ++ + GY+G Y + + L+P+VV DIH+ GGTIL +SRG D
Sbjct: 103 VLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGTILGSSRGPQDPE 162
Query: 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSF 130
+IVD +E IN +++IGGDGT +GA+ I +E+E+RGL+++V GIPKTIDNDI I KSF
Sbjct: 163 EIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSF 222
Query: 131 GFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP 190
GF+TAVE+A AI AHVE NG+G+VKLMGR+SGFI+ YA LAS+DV+ LIPE P
Sbjct: 223 GFETAVEKATEAIRCAHVEANGAPNGIGLVKLMGRHSGFIAAYAALASKDVNFVLIPEVP 282
Query: 191 FYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLW 250
F LEGP GL +E++L E GH VIVVAEGAGQE + E DASGN L DIGL+
Sbjct: 283 FDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFDDT----GETDASGNPKLGDIGLF 338
Query: 251 LTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFT 310
L +IK++F + + IN+KYIDP+Y+IR++P+N +D++YC L +AVH AMAG TG
Sbjct: 339 LKDRIKEYFKA-RGIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMV 397
Query: 311 VGPVNSRHAYIPIARVTETQKTVKLTDRMWARLLASTNQPSFLN 354
VG N+R ++PI +K V +W +L ST QP +
Sbjct: 398 VGRWNNRFVHLPIDLAVSKRKKVNPEGDLWRSVLESTGQPRSMG 441
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 437 bits (1126), Expect = e-152
Identities = 177/334 (52%), Positives = 234/334 (70%), Gaps = 11/334 (3%)
Query: 32 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG 91
GY+G Y ++ + L PK V IH+ GGTIL +SRGG D +VD + GIN ++ +GGDG
Sbjct: 128 GYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGFDPKVMVDTLIRHGINILFTLGGDG 187
Query: 92 TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 151
T +GA IYKE+ +R L ++V GIPKTIDNDI +ID+SFGF TAVEEAQ AI AA+VE +
Sbjct: 188 THRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAYVEAK 247
Query: 152 SVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 211
S +NGVGIVKLMGR SGFI+++A++AS DV+ CLIPE LE G+ E+IE++L++ G
Sbjct: 248 SAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDIPLE---GVLEYIEQRLQKKG 304
Query: 212 HMVIVVAEGAGQEFVAQSMPA--VDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINM 269
H VIVVAEGAGQ A DASGN+ L DIG++L +I + K +K +
Sbjct: 305 HCVIVVAEGAGQSL----KDADLDLGTDASGNKKLWDIGVYLKDEITK-YLKKKKPEHTV 359
Query: 270 KYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTET 329
KYIDP+YMIRA+P+N +D +CT LA +AVHGAMAGFTGF +G V++ + IPI ++
Sbjct: 360 KYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIGHVHNNYVMIPIKEMSGN 419
Query: 330 -QKTVKLTDRMWARLLASTNQPSFLNCSEVLHHQ 362
++ V R+W R+LA T QPSFLN E+ HQ
Sbjct: 420 YRRRVNPEGRLWQRMLAITGQPSFLNNEEIERHQ 453
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 389 bits (1001), Expect = e-134
Identities = 172/325 (52%), Positives = 227/325 (69%), Gaps = 7/325 (2%)
Query: 30 QGGYRGFYSKN--TLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYII 87
GYRGF+ K + LS KVV +IH GG++L SRGG T+ IVD+IE RGIN ++++
Sbjct: 91 PFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVL 150
Query: 88 GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 147
GG+GT GA I+ E KR ++V+V G+PKTIDNDI ++DK+FGFDTAVEEAQRAIN+A+
Sbjct: 151 GGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAY 210
Query: 148 VEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQL 207
+E S +G+G+VKLMGR SGFI+M+A+LAS VD CLIPE PF L+GP G+ +E +
Sbjct: 211 IEAHSAYHGIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVPFTLDGPNGVLRHLEHLI 270
Query: 208 KENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMI 267
+ G V+ VAEGAGQ+ + ++ + DASGN +L DIG+ L Q+IK HF + +
Sbjct: 271 ETKGSAVVCVAEGAGQDLLQKT----NATDASGNPVLGDIGVHLQQEIKKHFKDI-GVPA 325
Query: 268 NMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVT 327
++KYIDPTYMIRA +N SD I CT+L +AVHGA AGF+G TVG N+ + Y+PI V
Sbjct: 326 DVKYIDPTYMIRACRANASDAILCTVLGQNAVHGAFAGFSGITVGICNTHYVYLPIPEVI 385
Query: 328 ETQKTVKLTDRMWARLLASTNQPSF 352
+ V RMW R L ST QP F
Sbjct: 386 AYPRRVDPNSRMWHRCLTSTGQPDF 410
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 181 bits (461), Expect = 6e-54
Identities = 94/340 (27%), Positives = 154/340 (45%), Gaps = 45/340 (13%)
Query: 25 SLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT-----NKIVDNIEDR 79
+ GY G + L+ + V+D+ RGGT L ++R +N++
Sbjct: 34 EVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKTEEGRKVAAENLKKL 93
Query: 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 139
GI+ + +IGGDG+ GAAL+ +E + V G+PKTIDNDI+ D + GFDTA+E A
Sbjct: 94 GIDALVVIGGDGSYTGAALLAEE-----GGIPVVGVPKTIDNDISGTDFTIGFDTALETA 148
Query: 140 QRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGL 199
AI+ + S + IV++MGR++G++++ A LA+ D LIPE P L +
Sbjct: 149 VEAIDNLR-DTASSHERIFIVEVMGRHAGWLALAAGLAT-GADIILIPEEPADLIIEELI 206
Query: 200 FEFIE-RQLKENGHMVIVVAEGAGQ---EFVAQSMPAVDEKDASGNRLLLDIGLWLTQKI 255
E R+ + H +IVVAEGA E A+ + A++E A G+
Sbjct: 207 AEIKAKREARGKKHAIIVVAEGAIDQIGENGAELLAAIEELLALGD-------------- 252
Query: 256 KDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVN 315
+ ++ R + D + + L +AV + G TG+ VG N
Sbjct: 253 -----------FETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLLEGKTGYMVGIRN 301
Query: 316 SRHAYIPIARVTETQKTVKLTDR----MWARLLASTNQPS 351
++ ++PI K V + + L+ +
Sbjct: 302 NKIVHVPIDEAVAPLKMVMSLEEPDRSIKLDLVDLAKRLG 341
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 147 bits (372), Expect = 4e-41
Identities = 101/313 (32%), Positives = 156/313 (49%), Gaps = 34/313 (10%)
Query: 27 IEFQGGYRGFYSKNTLTL-SPKVVNDIHKRGGTILRTSRGGHDTN------KIVDNIEDR 79
I + G+RG +T+ L + V I RGGTIL +SR KIV N+++
Sbjct: 34 IGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTILGSSRTNPFKYEEDGDDKIVANLKEL 93
Query: 80 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 139
G++ + IGGDGT A + + +GL V G+PKTIDND+ D +FGFDTAVE A
Sbjct: 94 GLDALIAIGGDGTLGIA----RRLADKGLPVV--GVPKTIDNDLEATDYTFGFDTAVEIA 147
Query: 140 QRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGL 199
A++ H ES + V +V++MGR++G+I++++ +A D LIPE PF ++ +
Sbjct: 148 TEALDRLHTTAES-HHRVMVVEVMGRHAGWIALHSGIAG-GADVILIPEIPFDID---SV 202
Query: 200 FEFI-ERQLKENGHMVIVVAEGA----GQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQK 254
E + ER + ++VVAEGA G+ V + + KDA G+ L IG WL ++
Sbjct: 203 CEKVRERFARGKRFAIVVVAEGAKPKGGEMVVQEGV-----KDAFGHVRLGGIGNWLAEE 257
Query: 255 IKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPV 314
I+ + + ++ R + D + T +AV G G V
Sbjct: 258 IERRTGIETRATV------LGHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFGHMVALR 311
Query: 315 NSRHAYIPIARVT 327
+ Y+PIA
Sbjct: 312 GTDIVYVPIAEAV 324
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 143 bits (363), Expect = 9e-40
Identities = 74/201 (36%), Positives = 110/201 (54%), Gaps = 19/201 (9%)
Query: 29 FQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN-----KIVDNIEDRGINQ 83
GY G + + L K V+DI RGGTIL ++R + K ++N++ GI+
Sbjct: 37 IYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDEEGRAKAIENLKKLGIDA 96
Query: 84 VYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 143
+ +IGGDG+ GA + + + V G+P TIDNDIA D + GFDTA+ A AI
Sbjct: 97 LVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAI 150
Query: 144 NAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFI 203
+ S E V IV++MGR++G ++++A +A + LIPE PF +E L I
Sbjct: 151 DRLRDTASSHER-VFIVEVMGRHAGDLALHAGIAG-GAEVILIPEVPFDIE---ELCAKI 205
Query: 204 ERQLKENG--HMVIVVAEGAG 222
++ +E G H +IVVAEG
Sbjct: 206 KK-GRERGKKHAIIVVAEGVM 225
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 126 bits (318), Expect = 3e-33
Identities = 83/303 (27%), Positives = 130/303 (42%), Gaps = 33/303 (10%)
Query: 20 HLHHNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT-----NKIVD 74
+ GY G + L + V+DI RGGTI+ ++R K +
Sbjct: 27 IAEGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTEEGRAKAAE 86
Query: 75 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 134
N++ GI+ + +IGGDG+ GA L+ +E + V G+P TIDNDI D + GFDT
Sbjct: 87 NLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDT 146
Query: 135 AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE 194
A++ AI+ S +V++MGR+ G I++ A LA+ D IPE P E
Sbjct: 147 ALKTIVEAIDRIRDTASS-HQRTFVVEVMGRHCGDIALEAGLAT-GADIIFIPEEPAADE 204
Query: 195 GPGGLFEFI-ERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQ 253
+ + I +R+ + H +++VAEGA +F+ + + RL D
Sbjct: 205 WEEEMVDVIKKRRERGKRHGIVIVAEGAI-DFIPKPITEKLLAKLVEERLGFD------- 256
Query: 254 KIKDHFTKVQKMMINMKYIDPTYMIR-AIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVG 312
+ ++ R P+ D I + L AV + G G VG
Sbjct: 257 -TRATVLG--------------HVQRGGTPTA-FDRILASRLGAEAVELLLEGTGGTPVG 300
Query: 313 PVN 315
N
Sbjct: 301 IQN 303
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 105 bits (265), Expect = 5e-26
Identities = 65/195 (33%), Positives = 105/195 (53%), Gaps = 16/195 (8%)
Query: 32 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT-----NKIVDNIEDRGINQVYI 86
GY+G + L K V+ I RGGTIL T+R K V+N++ GI + +
Sbjct: 38 GYKGLINGKIEPLESKNVSGIIHRGGTILGTARCPEFKTEEVREKAVENLKKLGIEGLVV 97
Query: 87 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 146
IGGDG+ GA +Y+E + V G+P TIDNDI D + GFDTA+ A++
Sbjct: 98 IGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKI 152
Query: 147 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQ 206
S E ++++MGR++G +++YA +A+ + +IPE + ++ L + ++ Q
Sbjct: 153 RDTATSHER-AFVIEVMGRHAGDLALYAGIAT-GAEIIIIPEFDYDID---ELIQRLKEQ 207
Query: 207 LKENG-HMVIVVAEG 220
+ H +I+VAEG
Sbjct: 208 HEAGKKHSIIIVAEG 222
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 100 bits (251), Expect = 2e-24
Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 24/200 (12%)
Query: 32 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN-----KIVDNIEDRGINQVYI 86
GY G + N L + V+DI +RGGT + ++R K +N++ GI+ + +
Sbjct: 39 GYAGLVAGNIKQLDWESVSDIIQRGGTFIGSARCPEFREREGRLKAAENLKKHGIDALVV 98
Query: 87 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 146
IGGDG+ GA L+ E G G+P TIDNDI D + GFDTA+ AI+
Sbjct: 99 IGGDGSYTGADLLTSE---HGFNCV--GLPGTIDNDICGTDYTIGFDTALNTIVEAIDRI 153
Query: 147 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQ 206
S +V++MGR+ G +++ A +A D IPE+PF+ E + +
Sbjct: 154 RDTASS-HQRTFVVEVMGRHCGDLALVAGIAG-GADYIFIPEAPFW-------EEELCNR 204
Query: 207 LKEN-----GHMVIVVAEGA 221
LK H +++VAEGA
Sbjct: 205 LKRGRERGKRHNIVIVAEGA 224
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 100 bits (252), Expect = 4e-24
Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 19/205 (9%)
Query: 32 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH--DTN---KIVDNIEDRGINQVYI 86
GY G + + + L V+DI RGGT L ++R D K ++ ++ GI+ + +
Sbjct: 39 GYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKDEEGQAKAIEQLKKHGIDALVV 98
Query: 87 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 146
IGGDG+ GA + + G+P TIDNDI D + GFDTA+ AI+
Sbjct: 99 IGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRI 152
Query: 147 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER- 205
+ S + +V++MGR+ G I++ A +A + +IPE+ F E + I+
Sbjct: 153 R-DTSSSHQRISVVEVMGRHCGDIALAAGIAG-GAEFIVIPEAEFDRE---EVANRIKAG 207
Query: 206 QLKENGHMVIVVAEGA--GQEFVAQ 228
+ H ++VVAEG E +
Sbjct: 208 IERGKKHAIVVVAEGVYDVDELAKE 232
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 94.8 bits (236), Expect = 1e-21
Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 28/233 (12%)
Query: 40 NTLTLSPKVVNDIHKRGGTILRTSRGGHD-------------TNKIVDNIEDRGINQVYI 86
+ L V+D+ + GGTIL T+ G + +I+D G++ +
Sbjct: 54 QYIELDLDQVDDLLRMGGTILGTTNKGDPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIG 113
Query: 87 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 146
IGGDG+ A++ + ++ G+ + GIPKTIDND+ + S GFDTAV A A++
Sbjct: 114 IGGDGS---LAILRRLAQQGGINLV--GIPKTIDNDVGATEVSIGFDTAVNIATEALDRL 168
Query: 147 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFI-ER 205
H S N V I+++MGR +G I++ A +A D LIPE P+ LE + + I ER
Sbjct: 169 HFTAAS-HNRVMILEVMGRDAGHIALAAGIAG-GADVILIPEIPYTLE---NVCKKIRER 223
Query: 206 QLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDH 258
Q + ++VV+E E V + A G IG +L ++I +
Sbjct: 224 QEEGKNFCLVVVSEAVRTE----EGEQVTKTQALGEDRYGGIGQYLAEQIAER 272
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 90.1 bits (223), Expect = 2e-19
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 23 HNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK----IVDNIED 78
+ +I F GG G YSKN +T++ ++N GG + S G NK ++NI
Sbjct: 209 QSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVRNKDDLIAIENIVA 268
Query: 79 R-GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTA 135
+ +N + IIGGDG+ AALI + +R + +++ GIPKTID D+ I+ SFGFDTA
Sbjct: 269 KLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTA 328
Query: 136 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASR 179
+ I +V++ N +V++MGR + + + L +R
Sbjct: 329 TKTYSEVIGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQTR 372
Score = 34.6 bits (79), Expect = 0.089
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 70 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI--AVID 127
NK+ + + + +N + + G + T AAL+ + ++ + +V GIP T N++ +I+
Sbjct: 918 NKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIE 977
Query: 128 KSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGR 165
GFD++ + I + S+ ++LMGR
Sbjct: 978 TCVGFDSSTKVYASLIGNVLTDAVSMPKYWHFIRLMGR 1015
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 88.8 bits (221), Expect = 2e-19
Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 21/200 (10%)
Query: 70 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKS 129
++++ + I + GG+ + A + + +K G + GIPKTIDND+ D
Sbjct: 93 ERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHC 152
Query: 130 FGFDTAVEEAQRAINAAHVEVESVENG--VGIVKLMGRYSGFISMYATLASRDVDCC--- 184
GF +A + ++ A ++V ++ N V I+++MGR++G+++ A LA ++ D
Sbjct: 153 PGFGSAAKYIATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDAPHL 212
Query: 185 -LIPESPFYLEGPGGLFEFIE---RQLKENGHMVIVVAEG---AGQEFVAQSMPAVDEKD 237
+PE PF E +F+ +K G+ V+VV+EG A +F+A+ A +D
Sbjct: 213 IYLPERPFDEE------KFLADVRAIVKRYGYCVVVVSEGIRDADGKFIAE---AGLAED 263
Query: 238 ASGNRLLLDIGLWLTQKIKD 257
A G+ L + L IK+
Sbjct: 264 AFGHAQLGGVAPVLANLIKE 283
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 85.8 bits (213), Expect = 2e-18
Identities = 83/335 (24%), Positives = 143/335 (42%), Gaps = 64/335 (19%)
Query: 26 LIEFQGGYRGFYSKNTLTLSPKVVND---IHKRGGTILRTSR----------------GG 66
+I ++ GY+G +++ ++P V + +H+ GG+ + SR G
Sbjct: 38 IIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKLTNVADCVKRGLVKEG 97
Query: 67 HDTNKI-VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 125
+ K+ + + G++ ++ IGGD T AA + + + G + V G+PKTIDND+
Sbjct: 98 ENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVP 157
Query: 126 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIV--KLMGRYSGFISMYATLASR---- 179
I +S G TA E+ A +V E N ++ ++MGR G+++ A R
Sbjct: 158 IRQSLGAWTAAEQG--ARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLD 215
Query: 180 ---------------DVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQE 224
D+ +PE F LE E ++ + E G++ I ++EGAG +
Sbjct: 216 RQEYVPGFGLSAERWDIHAVYLPEMAFDLEAEA---ERLKAVMDEVGNVNIFLSEGAGLD 272
Query: 225 FVAQSMPAVDE---KDASGNRLL--LDIGLW----LTQKIKDHFTKVQKMMINMKYIDPT 275
+ M A E +DA G+ L ++ G W + + VQK
Sbjct: 273 AIVAEMEAAGEEVKRDAFGHVKLDTINPGAWFAKQFAELLGAEKVMVQK---------SG 323
Query: 276 YMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFT 310
Y R+ P+N D + AV A+ G +G
Sbjct: 324 YFARSAPANAEDLRLIKSMVDLAVECALRGVSGVI 358
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 75.8 bits (187), Expect = 7e-15
Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 23/243 (9%)
Query: 19 KHLHHNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGG-TILRTSRGGHDT----NKIV 73
K ++ L F GG G N + L+ ++++ GG I+ + R +T K +
Sbjct: 95 KLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKAL 154
Query: 74 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFG 131
+ ++ + IIGGD + AAL+ + K GL+ V G+PKTID D+ I+ SFG
Sbjct: 155 TTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFG 214
Query: 132 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPF 191
FDTA + I + S + ++LMGR + I++ L + + C+I E
Sbjct: 215 FDTACKIYSELIGNICRDALSAKKYWHFIRLMGRSASHIALECALQTHP-NVCIIGEE-- 271
Query: 192 YLEGPGGLFEFIE--------RQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRL 243
L + + R K VI++ EG + + +P V N L
Sbjct: 272 VAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEG-----LIEFIPEVQALIKELNNL 326
Query: 244 LLD 246
L
Sbjct: 327 LAQ 329
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 75.4 bits (185), Expect = 1e-14
Identities = 92/359 (25%), Positives = 145/359 (40%), Gaps = 74/359 (20%)
Query: 26 LIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGG-TILRTSRGGHDTNKIVD---NI-EDRG 80
L F GG G YS+ L+ +N I +GG I+ + R +T + + I E
Sbjct: 137 LFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQMRASLEICEKLK 196
Query: 81 INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEE 138
++ + +IGGD + AA++ + ++ V G PKTID D+ VI+ SFG+DTAV+
Sbjct: 197 LHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKT 256
Query: 139 AQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRD------------------ 180
I + +++ G V+LMGR + I++ L +R
Sbjct: 257 YSEQIGSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQTRANMILIGEEIKEENRSLMS 316
Query: 181 -----VDCCLIPESPFYLEG----PGGLFEFIER-----------QLKENGHMVIVVAEG 220
V+ L +S G P GL EFI LK N I+ +
Sbjct: 317 IVDEIVEMILKRDSLGKKHGIVLLPEGLIEFIPEFETLIKELNLILLKTNDRKQIIDSLS 376
Query: 221 AGQEFVAQSMPA------VDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDP 274
+ + +P+ + E+D GN + I T+++ H K + + YI
Sbjct: 377 QEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIA---TEELLVHMAKEKLEEVKKDYILD 433
Query: 275 T-------YMIR-AIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIAR 325
Y R A+PSN D YC L H+A A+ N R Y+ + R
Sbjct: 434 NVKTHYFGYEGRCALPSN-FDASYCFALGHTA--AALID---------NQRSGYMAVVR 480
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 71.6 bits (176), Expect = 2e-13
Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 39/203 (19%)
Query: 49 VNDIHKRGGTILRTSR--------GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL-- 98
V I GGTI+ T+R G K N+ GI+ + +IGGDG+ GA L
Sbjct: 58 VRGILSLGGTIIGTARCKEFRERPG---RLKAARNLVSNGIDALVVIGGDGSLTGADLFR 114
Query: 99 ---------------IYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 143
I E + + + G+ +IDND+ D + G D+A+ AI
Sbjct: 115 EEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALHRICEAI 174
Query: 144 NAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFI 203
+A +S + +V++MGR+ G++++ A +A+ D IPE P + +
Sbjct: 175 DAISSTAQSHQRAF-VVEVMGRHCGYLALMAAIAT-GADYVFIPERPPEEGWE----DQL 228
Query: 204 ERQLKENGHM-----VIVVAEGA 221
+LK N +++VAEGA
Sbjct: 229 CHKLKRNRKAGKRKTIVIVAEGA 251
Score = 58.9 bits (143), Expect = 2e-09
Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 5/213 (2%)
Query: 32 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGG 89
G+ G + L+ V GG+ L T+R G D I + I+ + IIGG
Sbjct: 428 GFSGLARHDVRELTWSDVEGWVGEGGSELGTNRSLPGDDLGTIAYYFQQHKIDGLIIIGG 487
Query: 90 DGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 148
+ + EK ++ + IP TI N++ + S G DTA+ E +
Sbjct: 488 FEAFEALYQLDAAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEITEYCDNIKQ 547
Query: 149 EVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLK 208
+ + V +V+ MG YSG+++ A LA+ D IPE L+ E ++
Sbjct: 548 SASASKRRVFVVETMGGYSGYLATMAGLAT-GADAAYIPEEGISLKDLQEDIEHLKETFA 606
Query: 209 ENGHMVIVV-AEGAGQEFVAQSMPAVDEKDASG 240
E +++ E A + + + + ++ G
Sbjct: 607 EGRAGKLILRNEKASKVYTTDFIARIISEEGKG 639
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 70.3 bits (172), Expect = 4e-13
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 9/180 (5%)
Query: 17 FVKHLHHNS-LIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGG-TILRTSRGGHDT----N 70
++K S L F+GG G + + L+ + + GG ++ + R +T
Sbjct: 97 YLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFK 156
Query: 71 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDK 128
+ + + ++ + +IGGD + AAL+ + +GL+ V G+PKTID D+ I+
Sbjct: 157 QAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIET 216
Query: 129 SFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPE 188
SFGFDTA + I + S VKLMGR + I++ L + + C+I E
Sbjct: 217 SFGFDTATKIYSELIGNVMRDARSTGKYWHFVKLMGRSASHIALECALKTHP-NICIISE 275
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 69.2 bits (170), Expect = 9e-13
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 33/194 (17%)
Query: 16 LF--VKHLH-HNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGG-TILRTSRGGHDT-- 69
LF +K L+ + L F GG G + + ++ +V+++ GG ++ + R +T
Sbjct: 92 LFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEE 151
Query: 70 --NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI--AV 125
++ ++ ++ + IIGGD + AA++ + K G + V G+PKTID D+
Sbjct: 152 QKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEF 211
Query: 126 IDKSFGFDTA-------VEEAQRAINAA----HVEVESVENGVGIVKLMGRYSGFISMYA 174
I+ SFGFDTA + R +A H +KLMGR + I++
Sbjct: 212 IETSFGFDTATKTYSEMIGNISRDALSAKKYWHF-----------IKLMGRSASHIALEC 260
Query: 175 TLASRDVDCCLIPE 188
L + + CLI E
Sbjct: 261 ALQTHP-NICLISE 273
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events and
exhibit complex allosteric behavior.
Length = 762
Score = 64.8 bits (158), Expect = 2e-11
Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 33/202 (16%)
Query: 47 KVVNDIHKRGGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAAL--- 98
+ V++ + GGTI+ ++R + N+ RGI + +IGGDG+ GA L
Sbjct: 59 ESVSNWLQEGGTIIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRS 118
Query: 99 --------------IYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 144
I +E + + + G+ +IDND D + G D+A+ ++
Sbjct: 119 EWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALHRICEVVD 178
Query: 145 AAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIE 204
A +S + ++++MGR+ G++++ + LA+ D IPE P G + +
Sbjct: 179 AITTTAQSHQRTF-VLEVMGRHCGYLALVSGLAT-GADWIFIPERP----PEDGWEDQMC 232
Query: 205 RQLKENGHM-----VIVVAEGA 221
R+L E+ +I+VAEGA
Sbjct: 233 RRLSEHRSRGKRLNIIIVAEGA 254
Score = 61.8 bits (150), Expect = 2e-10
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 10/169 (5%)
Query: 32 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR--GGHDTNKIVDNIEDRGINQVYIIGG 89
G+ G + L V RGG+ L T R D I N + GI+ + I+GG
Sbjct: 428 GFEGLAKGQIVELGWIDVGGWTGRGGSELGTKRTLPKKDLETIAYNFQKYGIDGLIIVGG 487
Query: 90 DGTQKGAALIYKEVEKRG----LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 145
KG + + E R + + IP T+ N++ D S G DTA+ + +
Sbjct: 488 FEAYKG---LLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDR 544
Query: 146 AHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE 194
+ V IV+ MG Y G+++ LA D + E PF +
Sbjct: 545 IKQSASGTKRRVFIVETMGGYCGYLATMTGLAV-GADAAYVFEEPFNIR 592
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 56.3 bits (136), Expect = 1e-08
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 20 HLHHNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTIL--RTS---RGGHDTNKIVD 74
H ++ L+ F GG G +++ TL ++ V++ +GG L RT R N +
Sbjct: 108 HNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALA 167
Query: 75 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGF 132
E ++ + IIGG + AA + + + + V G+P T++ D+ ++ + GF
Sbjct: 168 ACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGF 227
Query: 133 DTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLAS 178
DT + + I+ + S E ++LMGR + +++ L S
Sbjct: 228 DTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECALQS 273
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 54.0 bits (130), Expect = 7e-08
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 86 IIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAI 143
+IGGD + A L+ + + L+ V G PKTID D+ + SFGFDTA + I
Sbjct: 196 VIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMI 255
Query: 144 NAAHVEVESVENGVGIVKLMGRYSGFISMYATLAS 178
++ S V+LMGR + I++ L +
Sbjct: 256 GNVMIDARSTGKYYHFVRLMGRAASHITLECALQT 290
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 36.1 bits (84), Expect = 0.029
Identities = 27/107 (25%), Positives = 36/107 (33%), Gaps = 27/107 (25%)
Query: 55 RGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 114
G T GGH +IV GGD T GA EV+ R L AV
Sbjct: 117 PDGRWALTREGGHSRRRIVH------------AGGDAT--GA-----EVQ-RALDAAVR- 155
Query: 115 IPKTIDNDIAVIDKSFGFDTAVEEAQRAINA-AHVEVESVENGVGIV 160
+ + + + + D + HV E +GVG V
Sbjct: 156 -----ADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAV 197
>gnl|CDD|225740 COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase
[General function prediction only].
Length = 355
Score = 33.2 bits (76), Expect = 0.21
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 56 GGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 115
+ RT+ DT V + +RG++ + GGDGT A + + V G V V GI
Sbjct: 78 QESTPRTTA--EDTINAVRRMVERGVDLIVFAGGDGT---ARDVAEAV---GADVPVLGI 129
Query: 116 P 116
P
Sbjct: 130 P 130
>gnl|CDD|220382 pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly
chaperone) family of proteins is found in bacteria,
archaea and eukaryotes. Proteins in this family are
typically between 247 and 307 amino acids in length.
These proteins function as a chaperone for the 26S
proteasome. The 26S proteasome mediates
ubiquitin-dependent proteolysis in eukaryotic cells. A
number of studies including very recent ones have
revealed that assembly of its 20S catalytic core
particle is an ordered process that involves several
conserved proteasome assembly chaperones (PACs). Two
heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4,
promote the assembly of rings composed of seven alpha
subunits.
Length = 220
Score = 31.1 bits (71), Expect = 0.65
Identities = 28/143 (19%), Positives = 41/143 (28%), Gaps = 40/143 (27%)
Query: 69 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDK 128
I+D E+ G+++V +GG AG+P T
Sbjct: 88 AEAILDWAEELGVSEVITLGG---------------------LPAGVPHTRPPVTGA--- 123
Query: 129 SFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPE 188
E + E+ VGI SG + A L+ E
Sbjct: 124 -----ATDPELIDELKEEGPELSEYGGPVGI-------SGLLLGEAEQRGIPA-VSLLAE 170
Query: 189 SPFYLEGPGG---LFEFIERQLK 208
P YL P L E + + L
Sbjct: 171 VPHYLPDPKAALALLEALSKLLG 193
>gnl|CDD|241323 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, repeat 1.
RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358
kDa nucleoporin, and nuclear pore complex (NPC) protein
Nup358) is a giant nucleoporin that localizes to the
cytosolic face of the NPC. RanBP2 contains a
leucine-rich region, 8 zinc-finger motifs, a cyclophilin
A homologous domain, and 4 RanBDs. Ran is a Ras-like
nuclear small GTPase, which regulates receptor-mediated
transport between the nucleus and the cytoplasm. RanGTP
hydrolysis is stimulated by RanGAP together with the
Ran-binding domain containing acessory proteins RanBP1
and RanBP2. These accessory proteins stabilize the
active GTP-bound form of Ran. All eukaryotic cells
contain RanBP1, but in vertebrates however, the main
RanBP seems to be RanBP2. There is no RanBP2 ortholog in
yeast. Transport complex disassembly is accomplished by
a small ubiquitin-related modifier-1 (SUMO-1)-modified
version of RanGAP that is bound to RanBP2. RanBP1 acts
as a second line of defense against exported
RanGTP#importin complexes which have escaped from
dissociation by RanBP2. RanBP2 also interacts with the
importin subunit beta-1. RabBD shares structural
similarity to the PH domain, but lacks detectable
sequence similarity. The first RanBD2 is present in this
hierarchy.
Length = 112
Score = 29.3 bits (66), Expect = 1.1
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 195 GPGGLFEFIERQLKE--NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGN-RLLLDIGLWL 251
G G LFEFI KE G + + ++ V + A GN RLLL+ L+
Sbjct: 7 GDGALFEFITGGWKERGRGELRVNLSTTGKARLVMR---------AKGNYRLLLNANLFP 57
Query: 252 TQKIK 256
K+
Sbjct: 58 DMKLT 62
>gnl|CDD|107306 cd06311, PBP1_ABC_sugar_binding_like_3, Periplasmic sugar-binding
domain of uncharacterized ABC-type transport systems.
Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems that share homology with a
family of pentose/hexose sugar-binding proteins of the
type I periplasmic binding protein superfamily, which
consists of two domains connected by a three-stranded
hinge. The substrate specificity of this group is not
known, but it is predicted to be involved in the
transport of sugar-containing molecules and chemotaxis.
Length = 274
Score = 30.4 bits (69), Expect = 1.4
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 12/67 (17%)
Query: 78 DRGINQVYI----IGGDGTQKG---AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSF 130
DRG++ + GD G I ++ G V + GIP IDN ++
Sbjct: 92 DRGLSSPGAQDLYVAGDNYGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDN-----ERVD 146
Query: 131 GFDTAVE 137
FD A+
Sbjct: 147 AFDAAIA 153
>gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins.
EF-Tu subfamily. This subfamily includes orthologs of
translation elongation factor EF-Tu in bacteria,
mitochondria, and chloroplasts. It is one of several
GTP-binding translation factors found in the larger
family of GTP-binding elongation factors. The eukaryotic
counterpart, eukaryotic translation elongation factor 1
(eEF-1 alpha), is excluded from this family. EF-Tu is
one of the most abundant proteins in bacteria, as well
as, one of the most highly conserved, and in a number of
species the gene is duplicated with identical function.
When bound to GTP, EF-Tu can form a complex with any
(correctly) aminoacylated tRNA except those for
initiation and for selenocysteine, in which case EF-Tu
is replaced by other factors. Transfer RNA is carried to
the ribosome in these complexes for protein translation.
Length = 195
Score = 29.5 bits (67), Expect = 2.1
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 133 DTAVEEAQRA--INAAHVEVES 152
D A EE R IN AHVE E+
Sbjct: 41 DKAPEEKARGITINTAHVEYET 62
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 29.5 bits (67), Expect = 2.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 205 RQLKENGHMVIVVAEGAGQEFV 226
QLK G +VI V G Q +
Sbjct: 157 DQLKPGGRLVIPVGSGPAQRLL 178
>gnl|CDD|130188 TIGR01118, lacA, galactose-6-phosphate isomerase, LacA subunit.
This family contains members from low GC gram-positive
bacteria. Galactose-6-phosphate isomerase is involved in
lactose catabolism by the tagatose-6-phosphate pathway
[Energy metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 141
Score = 29.1 bits (65), Expect = 2.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 199 LFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDE 235
L + I+ L +NG VI V EG GQ+FV ++ E
Sbjct: 14 LKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASE 50
>gnl|CDD|184062 PRK13455, PRK13455, F0F1 ATP synthase subunit B; Provisional.
Length = 184
Score = 28.6 bits (64), Expect = 3.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 101 KEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 144
K V R + VAVA I + D + D A++E + ++
Sbjct: 141 KAVRDRAVSVAVAAAADVIAKQMTAADANALIDEAIKEVEARLH 184
>gnl|CDD|237021 PRK11914, PRK11914, diacylglycerol kinase; Reviewed.
Length = 306
Score = 29.0 bits (65), Expect = 4.2
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 27/146 (18%)
Query: 47 KVVNDIHKRGGTILR-TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK 105
+ + +H RG ++ HD +V +G + + ++GGDG V
Sbjct: 30 RAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDG-----------VIS 78
Query: 106 RGLQVAVAG------IPKTIDNDIAVIDKSFGFDTAVEEAQRAINA----AHVEVESVEN 155
LQV IP ND A + FG T EA + V++ +++
Sbjct: 79 NALQVLAGTDIPLGIIPAGTGNDHA---REFGIPTGDPEAAADVIVDGWTETVDLGRIQD 135
Query: 156 GVGIVKLMGRY--SGFISMYATLASR 179
GIVK G +GF S+ A+R
Sbjct: 136 DDGIVKWFGTVAATGFDSLVTDRANR 161
>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1220
Score = 29.2 bits (66), Expect = 4.7
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 298 AVHGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRMWARLLA 345
A HG G+ G +V PV HA P + K W + L
Sbjct: 617 AAHGESEGYEGLSVNPVPLDHANCPDQDLVAHAKAA------WDKALE 658
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group includes proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4
beta-galactosidase middle domain. The majority of
proteins in this group have a reactive Cys found in the
sharp turn between a beta strand and an alpha helix
termed the nucleophile elbow. For Class I glutamine
amidotransferases proteins which transfer ammonia from
the amide side chain of glutamine to an acceptor
substrate, this Cys forms a Cys-His-Glu catalytic triad
in the active site. Glutamine amidotransferases
activity can be found in a range of biosynthetic enzymes
included in this cd: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. For
Pyrococcus horikoshii PH1704, the Cys of the nucleophile
elbow together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Length = 115
Score = 27.6 bits (61), Expect = 5.2
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 31/134 (23%)
Query: 123 IAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVD 182
+AV+ + + A+ A EV+ V G V+ + + D D
Sbjct: 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVE------------SDVDLDDYD 48
Query: 183 CCLIP---ESPFYLEGPGGLFEFIERQLKEN--------GHMVIVVAEGAGQEFVAQSMP 231
++P +P L L + G ++V+ Q P
Sbjct: 49 GLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLLVLG--------VQFHP 100
Query: 232 AVDEKDASGNRLLL 245
+ +G RLL+
Sbjct: 101 EAIDGAEAGARLLV 114
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 28.8 bits (64), Expect = 6.2
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 70 NKIVDNI--EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI-------D 120
NK+V ++ E + ++ D A ++ +++ G QVAV P +
Sbjct: 1741 NKLVQDVTGEGKQSGANALVIDDDGH-NAGVLAEKLIAAGWQVAVVRSPWVVSHSASPLA 1799
Query: 121 NDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 153
+ IA + DT++E + I +++
Sbjct: 1800 SAIASVTLGTIDDTSIEAVIKDIEEKTAQIDGF 1832
>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein
phosphatases, metallophosphatase domain. PP2A-like
family of phosphoprotein phosphatases (PPP's) including
PP4 and PP6. PP2A (Protein phosphatase 2A) is a
critical regulator of many cellular activities. PP2A
comprises about 1% of total cellular proteins. PP2A,
together with protein phosphatase 1 (PP1), accounts for
more than 90% of all serine/threonine phosphatase
activities in most cells and tissues. The PP2A subunit
in addition to having a catalytic domain homologous to
PP1, has a unique C-terminal tail, containing a motif
that is conserved in the catalytic subunits of all
PP2A-like phosphatases including PP4 and PP6, and has an
important role in PP2A regulation. The PP2A-like family
of phosphatases all share a similar heterotrimeric
architecture, that includes: a 65kDa scaffolding subunit
(A), a 36kDa catalytic subunit (C), and one of 18
regulatory subunits (B). The PPP (phosphoprotein
phosphatase) family, to which PP2A belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 285
Score = 28.3 bits (64), Expect = 6.9
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 19/61 (31%)
Query: 29 FQGGY--RGFYSKNTLTL--SPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQV 84
F G Y RG+YS T L + KV + T+L RG H E R I QV
Sbjct: 74 FLGDYVDRGYYSVETFLLLLALKV---RYPDRITLL---RGNH---------ESRQITQV 118
Query: 85 Y 85
Y
Sbjct: 119 Y 119
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 27.9 bits (62), Expect = 7.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 205 RQLKENGHMVIVVAEGAGQ 223
RQLK+ G +VI V EG GQ
Sbjct: 161 RQLKDGGVLVIPVEEGVGQ 179
>gnl|CDD|235513 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Validated.
Length = 399
Score = 28.2 bits (64), Expect = 7.9
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 205 RQLKENGHMVIVVAEGAGQEFVAQ-SMPAVDEKDASGNRLLLD 246
R+L++ G V VV A ++FV + A SGN + D
Sbjct: 27 RRLRKAGADVRVVMTEAAKKFVTPLTFQA-----LSGNPVSTD 64
>gnl|CDD|237199 PRK12772, PRK12772, bifunctional flagellar biosynthesis protein
FliR/FlhB; Provisional.
Length = 609
Score = 28.5 bits (64), Expect = 8.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 3 IISSVICFCYSLPLFVKHLHHNSLIEFQGGYRGFYS 38
I+ + F +LPLF+K + + RGFY
Sbjct: 218 ILVGLTAFVIALPLFLKVISS-AFSNLPDAIRGFYK 252
>gnl|CDD|235986 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase;
Validated.
Length = 182
Score = 27.6 bits (62), Expect = 8.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 205 RQLKENGHMVIVVAEGAGQEFV 226
QL + G+ V V+ A +F+
Sbjct: 22 SQLTKRGYQVTVLMTKAATKFI 43
>gnl|CDD|224528 COG1612, CtaA, Uncharacterized protein required for cytochrome
oxidase assembly [Posttranslational modification,
protein turnover, chaperones].
Length = 323
Score = 27.7 bits (62), Expect = 9.3
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 288 NIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRMWARLL 344
+Y + + V G AG T ++ R E+ +TV+ R+ A L+
Sbjct: 188 LLYLQIYLGALVAGLDAGLAYNTWPLMDGRWITNL----GESPETVQFVHRLGAYLV 240
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,365,336
Number of extensions: 1912773
Number of successful extensions: 2019
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1953
Number of HSP's successfully gapped: 67
Length of query: 381
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 282
Effective length of database: 6,546,556
Effective search space: 1846128792
Effective search space used: 1846128792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)