RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016855
(381 letters)
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 436 bits (1124), Expect = e-152
Identities = 140/355 (39%), Positives = 210/355 (59%), Gaps = 16/355 (4%)
Query: 29 FQGGYRGFY---SKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVY 85
F+ GY G S+ + L V +IH GGTIL +SRG D ++VD +E G+N ++
Sbjct: 135 FRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILF 194
Query: 86 IIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 145
+GGDGTQ+GA +I +E ++RG+ ++V G+PKTIDND++ ++FGF TAVE+A +AI A
Sbjct: 195 TVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRA 254
Query: 146 AHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER 205
A+ E S GVG+VKLMGR SGFI+ A +AS + CL+PE+P + + +ER
Sbjct: 255 AYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLER 311
Query: 206 QLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHF--TKVQ 263
+ + VI+VAEG GQ++ DASGN+ L+DIG+ LT+K+K K +
Sbjct: 312 RFCHSRSCVIIVAEGFGQDW----GRGSGGYDASGNKKLIDIGVILTEKVKAFLKANKSR 367
Query: 264 KMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPI 323
+KYIDP+YMIRA P + +D ++C LA AVH AMAG TG + ++ + +PI
Sbjct: 368 YPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPI 427
Query: 324 ARVTETQKTVKLTDRMWARLLASTNQPSFLNCSEVLHHQEKAGRKTTEVINSERT 378
T ++ + L ++W ++ T S+V ++ R+ E IN R
Sbjct: 428 KVATSVRRVLDLRGQLWRQVREITVDLG----SDVRLARKLEIRRELEAINRNRD 478
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 220 bits (563), Expect = 4e-67
Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 16/257 (6%)
Query: 19 KHLHHNS-LIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNKI 72
K + NS L F+GG G + + L+ ++N GG + +S NK
Sbjct: 99 KKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKA 158
Query: 73 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSF 130
+ ++ +N + IIGGD + AA++ + +K G + V G+PKTID D+ I+ SF
Sbjct: 159 LFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISF 218
Query: 131 GFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP 190
GFD+A + I + S + VKLMGR + +++ L + + C++ E
Sbjct: 219 GFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALKTHP-NICIVSEEV 277
Query: 191 FYLE-GPGGLFEFI-----ERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLL 244
+ + + + +R L + V++V EG EF+ + + E ++
Sbjct: 278 LAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLI-EFIPEVKSLMLELCDIFDKNE 336
Query: 245 LDIGLWLTQKIKDHFTK 261
+ +K+K+ F
Sbjct: 337 GEFKGLNIEKMKEIFVA 353
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 155 bits (395), Expect = 1e-44
Identities = 83/333 (24%), Positives = 132/333 (39%), Gaps = 67/333 (20%)
Query: 29 FQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN-----KIVDNIEDRGINQ 83
GY G S L V DI RGGT L T+R K + N++ GI
Sbjct: 37 IYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTVEGREKGIANLKKLGIEG 96
Query: 84 VYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 143
+ +IGGDG+ GA + + G+P TIDNDI D + GFDTA+ AI
Sbjct: 97 LVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAI 150
Query: 144 NAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFI 203
+ S ++++MGR++G I+++A LA + LIPE+ + + + +
Sbjct: 151 DKIRDTATS-HERTYVIEVMGRHAGDIALWAGLAG-GAESILIPEADYDMH---EIIARL 205
Query: 204 ERQLKEN-GHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKV 262
+R + H +I+VAEG G G+ ++I++
Sbjct: 206 KRGHERGKKHSIIIVAEGVG------------------------SGVEFGKRIEEE---- 237
Query: 263 QKMMINMKYIDPTYMIRA----------IPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVG 312
R PS +D + + L AV + G G VG
Sbjct: 238 -----------TNLETRVSVLGHIQRGGSPS-AADRVLASRLGAYAVELLLEGKGGRCVG 285
Query: 313 PVNSRHAYIPIARVTETQKTVKLTDRMWARLLA 345
N++ I + ET+ TV+ ++ L+
Sbjct: 286 IQNNKLVDHDIIEILETKHTVEQNMYQLSKELS 318
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 157 bits (400), Expect = 1e-44
Identities = 59/345 (17%), Positives = 124/345 (35%), Gaps = 46/345 (13%)
Query: 22 HHNSLIEFQGGYRGF---YSKNTLTLSPKVVNDIHK---RGGTILRTSR--------GGH 67
+ G G +++ + + I + R
Sbjct: 32 QSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSGAFGSCRYKLKSLEQNRR 91
Query: 68 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 127
+ ++++ + I + GG + + + G + +PKT+DND+ + D
Sbjct: 92 EYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITD 151
Query: 128 KSFGFDTAVEEAQRAINAAHVEVESVE---NGVGIVKLMGRYSGFISMYATLASRD---- 180
GF + + + A +V S+ V ++++MGR++G+I+ LAS
Sbjct: 152 CCPGFGSVAKYIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREI 211
Query: 181 VDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASG 240
L PE F + ++ +K+ G+ +VV+EG + + + +DA G
Sbjct: 212 PVVILFPEISFDKQ---KFLAKVDSCVKKFGYCSVVVSEGVKGD-DGKFLSDQGVRDAFG 267
Query: 241 NRLLLDIGLWLTQKIKDHFTKVQKMMINMKY--IDPTYMIRA---IPSNGSDNIYCTLLA 295
+ L + + +K+ + +KY Y+ RA I S +D +
Sbjct: 268 HAQLGGVAPVVASMVKEG--------LGLKYHWGVADYLQRAARHIAS-KTDVEQAYAMG 318
Query: 296 HSAVHGAMAGFTGFTVG-------PVNSRHAYIPIARVTETQKTV 333
+AV A+ G P + +++V +K +
Sbjct: 319 QAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANVEKMM 363
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 153 bits (389), Expect = 8e-44
Identities = 75/333 (22%), Positives = 123/333 (36%), Gaps = 67/333 (20%)
Query: 29 FQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN-----KIVDNIEDRGINQ 83
+ G+ G + + L + V + GT L ++R ++ ++ GI+
Sbjct: 37 IRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDA 96
Query: 84 VYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 143
V +IGGDG+ GA + + G G+P TIDNDI D + G+DTA A AI
Sbjct: 97 VVVIGGDGSYHGALQLTRH----GFNSI--GLPGTIDNDIPYTDATIGYDTACMTAMDAI 150
Query: 144 NAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFI 203
+ S + V IV +MGR G I+M +A D +IPE P+ +E + +
Sbjct: 151 DKIRDTASS-HHRVFIVNVMGRNCGDIAMRVGVAC-GADAIVIPERPYDVE---EIANRL 205
Query: 204 ERQLKEN-GHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKV 262
++ + H ++VVAEG ++K +
Sbjct: 206 KQAQESGKDHGLVVVAEGVM------------------------TADQFMAELKKY---- 237
Query: 263 QKMMINMKYIDPTYMIRA----------IPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVG 312
+ +RA P+ SD + + L AVH + G G VG
Sbjct: 238 -----------GDFDVRANVLGHMQRGGTPT-VSDRVLASKLGSEAVHLLLEGKGGLAVG 285
Query: 313 PVNSRHAYIPIARVTETQKTVKLTDRMWARLLA 345
N + I + + L+
Sbjct: 286 IENGKVTSHDILDLFDESHRGDYDLLKLNADLS 318
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 151 bits (383), Expect = 6e-43
Identities = 74/321 (23%), Positives = 120/321 (37%), Gaps = 67/321 (20%)
Query: 29 FQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN-----KIVDNIEDRGINQ 83
GY G Y + L V+D+ RGGT L ++R + ++N++ RGI+
Sbjct: 38 IYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDA 97
Query: 84 VYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 143
+ +IGGDG+ GA + + G G+P TIDNDI D + GF TA+ AI
Sbjct: 98 LVVIGGDGSYMGAMRLTEM----GFPCI--GLPGTIDNDIKGTDYTIGFFTALSTVVEAI 151
Query: 144 NAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFI 203
+ S + + +V++MGRY G +++ A +A + ++PE F E L I
Sbjct: 152 DRLRDTSSSHQR-ISVVEVMGRYCGDLTLAAAIAG-GCEFVVVPEVEFSRE---DLVNEI 206
Query: 204 ERQLKEN-GHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKV 262
+ + + H ++ + E L I+
Sbjct: 207 KAGIAKGKKHAIVAITEHMC------------------------DVDELAHFIEKE---- 238
Query: 263 QKMMINMKYIDPTYMIRAI----------PSNGSDNIYCTLLAHSAVHGAMAGFTGFTVG 312
RA P D I + + A+ +AG+ G VG
Sbjct: 239 -----------TGRETRATVLGHIQRGGSPV-PYDRILASRMGAYAIDLLLAGYGGRCVG 286
Query: 313 PVNSRHAYIPIARVTETQKTV 333
N + + I E K
Sbjct: 287 IQNEQLVHHDIIDAIENMKRP 307
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 144 bits (365), Expect = 5e-38
Identities = 53/321 (16%), Positives = 105/321 (32%), Gaps = 38/321 (11%)
Query: 29 FQGGYRGFYSKNTLT-LSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQV 84
G+ G ++ L+ K + RGG+ + T+R D I + + +
Sbjct: 429 IYNGWSGLARHESVRSLNWKDMLGWQSRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGL 488
Query: 85 YIIGGDGTQKGAALIYKEVEK-RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 143
I+GG + + + E ++ + IP T+ N++ + S G DTA+
Sbjct: 489 IIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALNALMEYC 548
Query: 144 NAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFI 203
+ S +V G SG+++ YA+LA +PE LE E++
Sbjct: 549 DVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAV-GAQVSYVPEEGISLEQLSEDIEYL 607
Query: 204 ERQLKEN-----GHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDH 258
+ ++ +I+ + A + K+ +
Sbjct: 608 AQSFEKAEGRGRFGKLILKSTNASKALS-------------------------ATKLAEV 642
Query: 259 FTKVQKMMINMKYIDPTYMIR-AIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSR 317
T + K P ++ + +PS D T +A AV
Sbjct: 643 ITAEADGRFDAKPAYPGHVQQGGLPS-PIDRTRATRMAIKAVGFIKDNQAAIAEARAAEE 701
Query: 318 HAYIPIARVTETQKTVKLTDR 338
+ +++T V +
Sbjct: 702 NFNADDKTISDTAAVVGVKGS 722
Score = 124 bits (313), Expect = 3e-31
Identities = 50/235 (21%), Positives = 87/235 (37%), Gaps = 57/235 (24%)
Query: 29 FQGGYRGFYSKNTLT---LSPKVVNDIHKRGGTILRTSRGGHDTN-----KIVDNIEDRG 80
GY G + V GGT + T+R ++ + G
Sbjct: 39 VMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAG 98
Query: 81 INQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDI 123
++ + + GGDG+ GA L E +R + + G +IDND+
Sbjct: 99 VDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDM 158
Query: 124 AVIDKSFGFDTAVEEAQRAINA------AH-----VEVESVENGVGIVKLMGRYSGFISM 172
+ D + G +A++ +AI+ +H VEV MGR G++++
Sbjct: 159 STTDATIGAYSALDRICKAIDYVEATANSHSRAFVVEV------------MGRNCGWLAL 206
Query: 173 YATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-----GHMVIVVAEGAG 222
A +A+ D IPE P + + + ++ ++VVAEGA
Sbjct: 207 LAGIAT-SADYIFIPEKPA---TSSEWQDQMCDIVSKHRSRGKRTTIVVVAEGAI 257
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 142 bits (361), Expect = 1e-37
Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 5/216 (2%)
Query: 29 FQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYI 86
G+ G V +GG+ L + R +I NI I + I
Sbjct: 436 VHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLPKKSFEQISANITKFNIQGLVI 495
Query: 87 IGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 145
IGG G + + ++ L + IP T+ N++ D S G DTA+ +
Sbjct: 496 IGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDR 555
Query: 146 AHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER 205
+ V I++ MG Y G+++ A LA+ D I E PF + E + +
Sbjct: 556 IKQSAAGTKRRVFIIETMGGYCGYLATMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQ 614
Query: 206 QLKEN-GHMVIVVAEGAGQEFVAQSMPAVDEKDASG 240
++K +++ E + + + + ++ G
Sbjct: 615 KMKTTVKRGLVLRNEKCNENYTTDFIFNLYSEEGKG 650
Score = 133 bits (336), Expect = 3e-34
Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 29/220 (13%)
Query: 29 FQGGYRGFY--SKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN-----KIVDNIEDRGI 81
GY+G + + + V+ + + GGT++ ++R + N+ RGI
Sbjct: 51 VHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKDFREREGRLRAAHNLVKRGI 110
Query: 82 NQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIA 124
+ +IGGDG+ GA E R + + G+ +IDND
Sbjct: 111 TNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFC 170
Query: 125 VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCC 184
D + G D+A+ ++A +S + ++++MGR+ G++++ +L+ D
Sbjct: 171 GTDMTIGTDSALHRITEIVDAITTTAQSHQR-TFVLEVMGRHCGYLALVTSLSC-GADWV 228
Query: 185 LIPESPFYLEGPGGLFEFIERQLKENG--HMVIVVAEGAG 222
IPE P L + + G +I+VAEGA
Sbjct: 229 FIPECPPDDNWEDHLCRRLSET-RTRGSRLNIIIVAEGAI 267
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 143 bits (361), Expect = 2e-37
Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 10/222 (4%)
Query: 29 FQGGYRGFYSKNTLT-LSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVY 85
+ G+ G + L+ V D H GG+ + T+R D + + + +
Sbjct: 634 IRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLI 693
Query: 86 IIGGDGTQKGAALIYKEVEK-RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 144
IIGG + + + + +P T+ N++ + S G DT + +
Sbjct: 694 IIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCD 753
Query: 145 AAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIE 204
A + +V++ G YSG+++ YA L + PE+P L+ E +
Sbjct: 754 AVKQSASASRRRTFVVEVQGGYSGYLASYAGLIT-GALAVYTPENPINLQTVQEDIELLT 812
Query: 205 RQLKENG-----HMVIVVAEGAGQEFVAQSMPAVDEKDASGN 241
R +E+ + + E A + + + A+ + G
Sbjct: 813 RTYEEDDGKNRSGKIFIHNEKASKVYTTDLIAAIIGEAGKGR 854
Score = 128 bits (322), Expect = 2e-32
Identities = 71/402 (17%), Positives = 135/402 (33%), Gaps = 96/402 (23%)
Query: 29 FQGGYRGFYSKNTL--TLSPKVVNDIHKRGGTILRTSR-------GGHDTNKIVDNIEDR 79
GY G + L + V + GGTI+ T+R G + N+
Sbjct: 246 CYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKEFRERWGRL--QACYNMVSN 303
Query: 80 GINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDND 122
GI+ + + GGDG+ GA L KE + + + G+ +IDND
Sbjct: 304 GIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDND 363
Query: 123 IAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVD 182
+ D + G +++E ++ S +V++MGR+ G++ + + +A+ D
Sbjct: 364 MCGTDSTIGAYSSLERIIELVDYIDATAASHSR-AFVVEVMGRHCGWLGLMSGIAT-GAD 421
Query: 183 CCLIPESPFYLEGPGGLFEFIERQLKEN-----GHMVIVVAEGAGQEFVAQSMPAVDEKD 237
IPE P + +++ + ++VAEGA D
Sbjct: 422 YIFIPERPP---SESNWKDDLKKVCLRHREKGRRKTTVIVAEGAI--------------D 464
Query: 238 ASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRA----------IPSNGSD 287
N + + +KD ++ +D R P D
Sbjct: 465 DQLNPITSEE-------VKDVLVEIG--------LD----TRITRLGHVQRGGAPC-AFD 504
Query: 288 NIYCTLLAHSAVHGAMAGFTGFT---VGPVNSRHAYIPIARVTETQKTVK--LTDRMWAR 342
T+ AV + + + ++ P+ KTV + + + +
Sbjct: 505 RFLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIEAKDFDK 564
Query: 343 LLA------STNQPSFLNCSEVLHHQEKA---GRKTTEVINS 375
L +T+ +FL+ S+ R +I+
Sbjct: 565 ALQLRDQEFATSYENFLSVSKYDDGSYLVPESSRLNIAIIHV 606
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 141 bits (357), Expect = 6e-37
Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 10/221 (4%)
Query: 29 FQGGYRGFY-SKNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVY 85
G+ G + LS V + H GG+ + T+R D I + ++ +
Sbjct: 429 IMNGFSGLIQTGEVKELSWIDVENWHNLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLI 488
Query: 86 IIGGDGTQKGAALIYKEVEK-RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 144
I+GG + + + + + IP T+ N++ + S G DT + +
Sbjct: 489 ILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTD 548
Query: 145 AAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIE 204
+ V + ++ G +SG+I+ + L + PE L ++
Sbjct: 549 DIKQSASATRRRVFVCEVQGGHSGYIASFTGLIT-GAVSVYTPEKKIDLASIREDITLLK 607
Query: 205 RQLKENG-----HMVIVVAEGAGQEFVAQSMPAVDEKDASG 240
+ + ++V E A + Q + + + + G
Sbjct: 608 ENFRHDKGENRNGKLLVRNEQASSVYSTQLLADIISEASKG 648
Score = 127 bits (321), Expect = 3e-32
Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 34/223 (15%)
Query: 29 FQGGYRGFYSKNTL--TLSPKVVNDIHKRGGTILRTSRGGHDTN-----KIVDNIEDRGI 81
GY G ++ + V GGT++ T+R + N+ +GI
Sbjct: 41 VYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSMEFRKREGRRQAAGNLISQGI 100
Query: 82 NQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIA 124
+ + + GGDG+ GA L E +++ G+ +IDND++
Sbjct: 101 DALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMS 160
Query: 125 VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCC 184
D + G +A+E ++ +S +V++MGR+ G++++ A +A+ D
Sbjct: 161 GTDSTIGAYSALERICEMVDYIDATAKSHSR-AFVVEVMGRHCGWLALMAGIAT-GADYI 218
Query: 185 LIPESPFYLEGPGGLFEFIERQLKEN-----GHMVIVVAEGAG 222
IPE G + ++ + + + I+VAEGA
Sbjct: 219 FIPERAV---PHGKWQDELKEVCQRHRSKGRRNNTIIVAEGAL 258
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 137 bits (348), Expect = 1e-35
Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 11/222 (4%)
Query: 29 FQGGYRGFYSKNTLT-LSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDNIEDRGINQV 84
G+ G ++ ++ + GG+ + T+R D I E G + +
Sbjct: 607 IHNGFSGLARHESVRSINWLDIEGWGSLGGSEIGTNRTLPNDADIGMIAYFFEKYGFDGL 666
Query: 85 YIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 143
++GG + + L++ + IP TI N++ + S G DT +
Sbjct: 667 ILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYC 726
Query: 144 NAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFI 203
+ + N V +V++ G SG+I+ +A LA +PE L +
Sbjct: 727 DVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLAC-GAQISYVPEEGISLAQLEMDINSL 785
Query: 204 ERQLKEN-----GHMVIVVAEGAGQEFVAQSMPAVDEKDASG 240
+ + +I+ +E A + + + + + +ASG
Sbjct: 786 KESFANDQGKTKSGRLILKSENASKVLTTEVISTIIDDEASG 827
Score = 127 bits (320), Expect = 4e-32
Identities = 52/223 (23%), Positives = 86/223 (38%), Gaps = 35/223 (15%)
Query: 29 FQGGYRGFYSKNTLTLSP---KVVNDIHKRGGTILRTSRGGHDTN-----KIVDNIEDRG 80
GY G + V GGT + T+R K N+ D G
Sbjct: 217 IHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKEFRERSGRLKACKNMIDMG 276
Query: 81 INQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDI 123
I+ + + GGDG+ GA E + + G +IDND+
Sbjct: 277 IDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDM 336
Query: 124 AVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDC 183
+ D + G ++++ RAI+ S IV++MGR+ G++ + A LA+ D
Sbjct: 337 SSTDATIGAFSSLDRICRAIDYIDATANSHSR-AFIVEVMGRHCGWLGLLAGLAT-SADY 394
Query: 184 CLIPESPFYLEGPGGLFEFIERQLKEN-----GHMVIVVAEGA 221
LIPE P + + + ++ +++VAEGA
Sbjct: 395 ILIPEKPA---SSREWQDQMCDIVGKHRARGKRKTIVIVAEGA 434
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 3e-07
Identities = 58/285 (20%), Positives = 94/285 (32%), Gaps = 87/285 (30%)
Query: 12 YSLPLFVKHLHHNSLIEFQGGYRGFY-SKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 70
+S+ V + N I F GG +G +N + + + D G T
Sbjct: 1659 FSILDIVINNPVNLTIHF-GGEKGKRIRENYSAMIFETIVD-------------GKLKTE 1704
Query: 71 KIVDNIEDRGINQVYIIGGDG--------TQKGAAL------IYKEVEKRGLQV---AVA 113
KI I + + Y + TQ AL +++++ +GL A
Sbjct: 1705 KIFKEINEHSTS--YTFRSEKGLLSATQFTQ--PALTLMEKAAFEDLKSKGLIPADATFA 1760
Query: 114 GIPKTIDNDIAVIDKSFG-FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI-- 170
G S G + A+ A+ +V S+E+ V +V G
Sbjct: 1761 G-------------HSLGEY-AAL--------ASLADVMSIESLVEVVFYRGMTMQVAVP 1798
Query: 171 ------SMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVV---AEGA 221
S Y +A + P L +ER K G +V +V E
Sbjct: 1799 RDELGRSNYGMIA-------INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN- 1850
Query: 222 GQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMM 266
Q A + A+D + +L I L QKI ++QK +
Sbjct: 1851 QQYVAAGDLRALDT--VT--NVLNFIKL---QKID--IIELQKSL 1886
Score = 41.6 bits (97), Expect = 4e-04
Identities = 73/442 (16%), Positives = 125/442 (28%), Gaps = 192/442 (43%)
Query: 29 F--QG---GY----RGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI------- 72
F QG Y R Y T V + I T+ R D K+
Sbjct: 160 FGGQGNTDDYFEELRDLYQ----TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 73 ---VDNIEDR----------------GINQV--YIIGGDGTQKGAALIYKEVEKR----- 106
++N + G+ Q+ Y++ T K E+
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV----TAKLLGFTPGELRSYLKGAT 271
Query: 107 ----GLQVAVAGIPKTIDNDIAVID--KSFGFDTAVE----------EAQRA-----INA 145
GL AVA IA D +SF F + + A +
Sbjct: 272 GHSQGLVTAVA---------IAETDSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 146 AHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER 205
+ +E +S+EN G+ M L+ ++ + +++ +
Sbjct: 322 SILE-DSLENNEGVPSPM------------LSISNLT-------------QEQVQDYVNK 355
Query: 206 ---QLKENGHMVIVVAEGAGQEFV----AQSMPAVD-----EKDASGNRLLLDIGLWLTQ 253
L + I + GA + V QS+ ++ K SG LD Q
Sbjct: 356 TNSHLPAGKQVEISLVNGA-KNLVVSGPPQSLYGLNLTLRKAKAPSG----LD------Q 404
Query: 254 -KIKDHFTKVQKMMINMKYIDPT-------YMIRA---------------------IP-- 282
+I F++ +K+ + ++ P ++ A IP
Sbjct: 405 SRIP--FSE-RKLKFSNRF-LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 283 --SNGSD------NIY---CTLLAHSAVHGAMAGFTGFT----VGP-VNSRHAYIPIARV 326
+GSD +I + V T GP S + +
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG-----LGVL 515
Query: 327 TETQKTVKLTDRMWARL-LAST 347
T + D R+ +A T
Sbjct: 516 TH-----RNKDGTGVRVIVAGT 532
Score = 39.6 bits (92), Expect = 0.002
Identities = 24/98 (24%), Positives = 32/98 (32%), Gaps = 38/98 (38%)
Query: 47 KVVNDIHKRGGTILRTSRGGHDTNKIV-DNIEDRGINQVYIIGGDGTQKGAALIYKEVEK 105
VV + KR G ++ IV N+E NQ Y+ GD
Sbjct: 1828 YVVERVGKRTGWLVE----------IVNYNVE----NQQYVAAGD--------------L 1859
Query: 106 RGLQVAVA-----GIPKTIDNDIAVIDKSFGFDTAVEE 138
R L + K I DI + KS + VE
Sbjct: 1860 RALDTVTNVLNFIKLQK-I--DIIELQKSLSLE-EVEG 1893
Score = 36.2 bits (83), Expect = 0.022
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 38/126 (30%)
Query: 36 FYSKNTLTLSP---KVVNDIHKRGGTI----LRT----SRGGHDTNKIVDNIEDRGINQV 84
F+S L P + D+ K + ++ + G D + +I +R ++ +
Sbjct: 427 FHSH---LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 85 ----------------YIIG-GDGTQKG-AALIYKEVEKRGLQVAVAGIPKTIDNDIAVI 126
+I+ G G G L ++ + G++V VAG T+D +
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG---TLDIN---P 537
Query: 127 DKSFGF 132
D +GF
Sbjct: 538 DDDYGF 543
Score = 32.7 bits (74), Expect = 0.23
Identities = 43/278 (15%), Positives = 72/278 (25%), Gaps = 97/278 (34%)
Query: 29 FQGGYRGFYSKNTLTLSPKVVNDIHKRG-GT------ILRTSRGGHDTNKIVD--NIEDR 79
F G R + + +L P ++ D + G I ++ V+ N
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE--QVQDYVNKTNSHLP 361
Query: 80 GINQVYI--IGGD------GTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA------- 124
QV I + G G + +L GL + + D +
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQ--SL-------YGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 125 --VIDKSFG-----F-----DTAVEEAQRAINAAHVE---------VESVENGVGIVKLM 163
F F A + + + +V V +G +
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL---- 468
Query: 164 GRYSGFISMYATLASRDVDCCLIPESPFYLE-------------GPGGLFEFIERQLKEN 210
R + +++ R VDC I P E GPGG
Sbjct: 469 -R-----VLSGSISERIVDC--IIRLPVKWETTTQFKATHILDFGPGGASGL-------- 512
Query: 211 GHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIG 248
G + +G G + +D D G
Sbjct: 513 GVLTHRNKDGTGVRVIVAG--TLDINPDD------DYG 542
Score = 31.2 bits (70), Expect = 0.71
Identities = 47/310 (15%), Positives = 80/310 (25%), Gaps = 126/310 (40%)
Query: 132 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYAT---------------- 175
F+ + E AA E + +L+G++ G++S
Sbjct: 37 FNKILPEPTEGF-AADDEPTTP------AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 176 ------LASRDV--------------------------DCCLIPESPFYLEGPGGLFEFI 203
L D+ ++ + PF + LF +
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 204 ERQLKENGHMVIVVAEGAGQ-----------EFVAQSMPAVDE-KDASGNRLL------- 244
G+ +V G GQ + V + S L
Sbjct: 150 GE-----GNAQLVAIFG-GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 245 ---------LDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRA---IPSNGSDNIYCT 292
L+I WL D Y++ P I
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTP--------------DKDYLLSIPISCPL-----IGVI 244
Query: 293 LLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRMWARLLA-STNQPS 351
LAH V A GFT G + S + T + + +T A +A + + S
Sbjct: 245 QLAHYVV---TAKLLGFTPGELRSY-----LKGATGHSQGL-VT----AVAIAETDSWES 291
Query: 352 FL-NCSEVLH 360
F + + +
Sbjct: 292 FFVSVRKAIT 301
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 3e-07
Identities = 45/307 (14%), Positives = 98/307 (31%), Gaps = 85/307 (27%)
Query: 16 LFVKHLHHNSLIEFQGGYRGFYSKNTLTL----SPKVVN--DIHKRGGTILRTSRGGHDT 69
L + N L L L + K N ++ + IL T+R T
Sbjct: 237 LLKSKPYENCL---------------LVLLNVQNAKAWNAFNLSCK---ILLTTRFKQVT 278
Query: 70 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYK--EVEKRGL-QVAVAGIPKTIDNDIAVI 126
+ + I+ + + +L+ K + + L + + P+ +++I
Sbjct: 279 D-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR----LSII 333
Query: 127 DKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFIS---------MYATLA 177
+S + N HV + + I++ ++ M+ L+
Sbjct: 334 AESI-----RDGLATWDNWKHVNCDKLTT---IIES------SLNVLEPAEYRKMFDRLS 379
Query: 178 --SRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDE 235
IP L I + ++ MV+V + S+ E
Sbjct: 380 VFPPSAH---IPTI---------LLSLIWFDVIKSDVMVVV------NKLHKYSLV---E 418
Query: 236 KDASGNRL-LLDIGLWLTQKIKDHFTKVQKMMINMKYIDP-TYMIRAIPSNGSDNIYCTL 293
K + + + I L L K+ ++ + + +++ Y P T+ + D + +
Sbjct: 419 KQPKESTISIPSIYLELKVKL-ENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 294 LAHSAVH 300
+ H H
Sbjct: 477 IGH---H 480
Score = 40.2 bits (93), Expect = 0.001
Identities = 39/245 (15%), Positives = 71/245 (28%), Gaps = 71/245 (28%)
Query: 147 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYL----EGPGGLFEF 202
H++ E G + +Y +S++ + DC + + P + E +
Sbjct: 6 HMDFE-----TGEHQY--QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-----IDH 53
Query: 203 I--ERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFT 260
I + + +E V + + V + +L IK
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK----------FLMSPIKTEQ- 102
Query: 261 KVQKMMINMKYI---DPTYMIRAIPSNGSDNI-----YCTL------LAHS---AVHGAM 303
Q M+ YI D Y N+ Y L L + + G +
Sbjct: 103 -RQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-V 158
Query: 304 AGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRM-----WARLLASTNQP-SFLNCSE 357
G G T + + K+ +M W L + N P + L +
Sbjct: 159 LGS-GKTW-------------VALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQ 203
Query: 358 VLHHQ 362
L +Q
Sbjct: 204 KLLYQ 208
Score = 36.0 bits (82), Expect = 0.024
Identities = 32/226 (14%), Positives = 65/226 (28%), Gaps = 76/226 (33%)
Query: 16 LFVKHLHHNSLIEFQGGYRGFYSKNTLTLS--PKVVND--IHKRGGTIL---RTSRGGHD 68
+ V LH SL+E + S ++ L K+ N+ +H+ I+ + D
Sbjct: 406 VVVNKLHKYSLVE-KQPKESTISIPSIYLELKVKLENEYALHRS---IVDHYNIPK-TFD 460
Query: 69 TNKIVDNIEDRGINQVYI---IGGDGTQKGAALIY--KEVEKRGLQVAVAGIPKTIDNDI 123
++ ++ D+ Y IG + K +E + +
Sbjct: 461 SDDLIPPYLDQ-----YFYSHIG-----------HHLKNIEHPER---MTLFRMVFLD-- 499
Query: 124 AVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRY---------------SG 168
F F +E+ R + A S+ N + +K Y
Sbjct: 500 ------FRF---LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 169 FISMYATLASRDVDCCLI------PESPFYLEGPGGLFEFIERQLK 208
F+ L+ + + E +Q++
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEA--------HKQVQ 588
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.089
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 328 ETQKTVKLTDRMWARLLASTNQPSF-LNCS-E 357
E Q KL + +L A + P+ + + E
Sbjct: 18 EKQALKKLQASL--KLYADDSAPALAIKATME 47
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 31.6 bits (72), Expect = 0.37
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 13/107 (12%)
Query: 46 PKVVNDIHKRGG--TILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT--QKGAALIYK 101
P + + K G + T + G T + + + GGDGT + +
Sbjct: 45 PDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGTLNEVVNGIA-- 101
Query: 102 EVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 148
++ + + IP ND ++ + A I H
Sbjct: 102 ---EKPNRPKLGVIPMGTVNDFG---RALHIPNDIMGALDVIIEGHS 142
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli}
SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Length = 332
Score = 31.2 bits (71), Expect = 0.55
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 46 PKVVNDIHKRGG--TILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT--QKGAALIYK 101
+ + + + G + T G + V+ G+ V GGDGT + ALI
Sbjct: 47 REAIMLLREEGMTIHVRVTWEKGDAA-RYVEEARKFGVATVIAGGGDGTINEVSTALIQC 105
Query: 102 EVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 148
E + A+ +P ND A S G A+++A + A
Sbjct: 106 EGDDI---PALGILPLGTANDFA---TSVGIPEALDKALKLAIAGDA 146
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response
regulator, beryllium fluoride, transcription factor,
activated, virulence; 1.90A {Escherichia coli} SCOP:
c.23.1.1 PDB: 2pkx_A
Length = 121
Score = 28.6 bits (65), Expect = 1.4
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 201 EFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGL 249
++ Q+++ GH V + ++ D ++D+GL
Sbjct: 14 HHLKVQIQDAGHQVDDAEDAKEADYYLNEHIP----DI----AIVDLGL 54
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 29.1 bits (66), Expect = 2.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 206 QLKENGHMVIVVAEGAGQEFV 226
L ENG ++I + E Q
Sbjct: 182 LLAENGKLIIPIEEDYTQVLY 202
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA
binding domain, phosphorylation; 1.58A {Mycobacterium
tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Length = 233
Score = 29.0 bits (66), Expect = 2.2
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 201 EFIERQLKENGHMVIVVAEGA-GQEFVAQSMPAVDEKDASGNRLLLDIGL 249
+ER L+ +G V +GA ++ P ++LDI +
Sbjct: 21 ASLERGLRLSGFEVATAVDGAEALRSATENRPDA---------IVLDINM 61
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 29.1 bits (66), Expect = 2.3
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 76 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDK----SFG 131
I+D+ +YI+ T+ AL + V K V K +D + V D G
Sbjct: 75 IKDKRTENLYILPASQTRDKDALTREGVAK------VLDDLKAMDFEFIVCDSPAGIETG 128
Query: 132 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSG 168
A+ A AI + EV SV + I+ ++ S
Sbjct: 129 ALMALYFADEAIITTNPEVSSVRDSDRILGILASKSR 165
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 28.8 bits (65), Expect = 2.5
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 205 RQLKENGHMVIVVAEGAGQEFV 226
QLKE G M++ + G Q+
Sbjct: 153 EQLKEGGIMILPIGVGRVQKLY 174
>3r0j_A Possible two component system response transcript positive
regulator PHOP; beta-alpha fold, winged
helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Length = 250
Score = 28.1 bits (62), Expect = 4.2
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 16/77 (20%)
Query: 201 EFIERQLKENGHMVIVVAEGA-GQEFVAQSMPAVDEKDASGNRLLLDI------GLWLTQ 253
E + LK G V GA + ++ P DA ++LD+ G + +
Sbjct: 37 ELLSVSLKFQGFEVYTATNGAQALDRARETRP-----DA----VILDVXMPGMDGFGVLR 87
Query: 254 KIKDHFTKVQKMMINMK 270
+++ + + +
Sbjct: 88 RLRADGIDAPALFLTAR 104
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 28.8 bits (64), Expect = 4.3
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 133 DTAVEEAQRA--INAAHVEVES 152
D A EE R IN +HVE ++
Sbjct: 335 DNAPEEKARGITINTSHVEYDT 356
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 27.5 bits (62), Expect = 7.7
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 133 DTAVEEAQRA--INAAHVEVES 152
D A EE R IN AHVE E+
Sbjct: 51 DKAPEERARGITINTAHVEYET 72
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative
phosphosugar isomerase, structural genomics, joint for
structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus
subtilis}
Length = 329
Score = 27.2 bits (61), Expect = 8.6
Identities = 6/55 (10%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 61 RTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK---EVEKRGLQVAV 112
T++ + + +++ + I+ V+ + G K + E + + +
Sbjct: 5 ATAKVNREVQAFLQDLKGKTIDHVFFVAC-GGSSAIMYPSKYVFDRESKSINSDL 58
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 27.5 bits (62), Expect = 8.9
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 133 DTAVEEAQRA--INAAHVEVES 152
D A EE R INAAHVE +
Sbjct: 42 DNAPEERARGITINAAHVEYST 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,871,592
Number of extensions: 370546
Number of successful extensions: 1220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1139
Number of HSP's successfully gapped: 63
Length of query: 381
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 286
Effective length of database: 4,049,298
Effective search space: 1158099228
Effective search space used: 1158099228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)