RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016855
(381 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 187 bits (475), Expect = 7e-55
Identities = 75/391 (19%), Positives = 141/391 (36%), Gaps = 78/391 (19%)
Query: 19 KHLHHNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNKIV 73
K ++ L F+GG G + + L+ ++N GG + +S NK +
Sbjct: 97 KFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKAL 156
Query: 74 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFG 131
++ +N + IIGGD + AA++ + +K G + V G+PKTID D+ I+ SFG
Sbjct: 157 FVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFG 216
Query: 132 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPF 191
FD+A + I + S + VKLMGR + +++ L + C + E
Sbjct: 217 FDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLA 276
Query: 192 YLEGPGGLFEFI-----ERQLKENGHMVIVVAEGAG------------------------ 222
+ + + + +R L + V++V EG
Sbjct: 277 KKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEF 336
Query: 223 ----------------------------QEFVAQSMPAVDEKDASGNRLLLDI--GLWLT 252
+ + ++ E+D GN + +
Sbjct: 337 KGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFI 396
Query: 253 QKIKDHFTKVQKMMINMKYIDP-----TYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFT 307
+ I+ ++K P Y R+ + D+ YC L ++AV + G T
Sbjct: 397 EMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLT 456
Query: 308 GFTVGPVN-SRHAY------IPIARVTETQK 331
G+ N + +P+ + ++
Sbjct: 457 GYMSCIKNLNLKPTDWIAGGVPLTMLMNMEE 487
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 152 bits (384), Expect = 9e-44
Identities = 68/327 (20%), Positives = 118/327 (36%), Gaps = 47/327 (14%)
Query: 22 HHNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK-----IVDNI 76
++ GY G Y + L V+D+ RGGT L ++R ++ ++N+
Sbjct: 31 EGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENL 90
Query: 77 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 136
+ RGI+ + +IGGDG+ GA + + G+P TIDNDI D + GF TA+
Sbjct: 91 KKRGIDALVVIGGDGSYMGAMRLTEMGFP------CIGLPGTIDNDIKGTDYTIGFFTAL 144
Query: 137 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGP 196
AI+ S + +V++MGRY G +++ A + C +
Sbjct: 145 STVVEAIDRLRDTSSS-HQRISVVEVMGRYCGDLTLAAAI---AGGCEFVVVPEVEFSRE 200
Query: 197 GGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIK 256
+ E K H ++ + E D + + + G
Sbjct: 201 DLVNEIKAGIAKGKKHAIVAITEHMCD------------VDELAHFIEKETG-------- 240
Query: 257 DHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS 316
+ ++ R D I + + A+ +AG+ G VG N
Sbjct: 241 ----------RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNE 290
Query: 317 RHAYIPIARVTETQKTVKLTDRMWARL 343
+ + I E K + W
Sbjct: 291 QLVHHDIIDAIENMK--RPFKGDWLDC 315
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 149 bits (377), Expect = 9e-43
Identities = 77/329 (23%), Positives = 129/329 (39%), Gaps = 45/329 (13%)
Query: 22 HHNSLIEFQGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNKIVDNI 76
H + GY G + N L V DI RGGTIL T+R K ++ +
Sbjct: 30 HGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHRGGTILYTARCPEFKTEEGQKKGIEQL 89
Query: 77 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 136
+ GI + +IGGDG+ +GA + + G+P TIDNDI D + GFDTA+
Sbjct: 90 KKHGIQGLVVIGGDGSYQGAKKLTEHGFP------CVGVPGTIDNDIPGTDFTIGFDTAL 143
Query: 137 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGP 196
AI+ + + ++++MGR++G I++++ LA + LIPE+ + +
Sbjct: 144 NTVIDAIDKIR-DTATSHERTYVIEVMGRHAGDIALWSGLAG-GAETILIPEADYDMNDV 201
Query: 197 GGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIK 256
+ H +I+VAEG G ++A+G
Sbjct: 202 IA--RLKRGHERGKKHSIIIVAEGVGSGV----DFGRQIQEATG---------------- 239
Query: 257 DHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS 316
+ ++ R D + + L AV + G G VG N+
Sbjct: 240 ----------FETRVTVLGHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGRCVGIQNN 289
Query: 317 RHAYIPIARVTETQKTVKLTDRMWARLLA 345
+ IA + T+ ++ L+
Sbjct: 290 QLVDHDIAEALANKHTIDQRMYALSKELS 318
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 33.0 bits (74), Expect = 0.046
Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 9/149 (6%)
Query: 46 PKVVNDIHKRGG--TILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV 103
P + + K G + T + G T + + + GGDGT E
Sbjct: 23 PDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGTLNEVVNGIAEK 81
Query: 104 EKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLM 163
R + IP ND + ++ V++ + N I
Sbjct: 82 PNR---PKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAA 138
Query: 164 GRYSGFISMYATLASRDVDCCLIPESPFY 192
G G ++ + + + P + +
Sbjct: 139 G---GQLTQVSYETPSKLKSIVGPFAYYI 164
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 31.5 bits (70), Expect = 0.17
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 47 KVVNDIHKRGGTI-LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK 105
+ + + + G TI +R + D + V+ G+ V GGDGT + + E
Sbjct: 19 EAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEG 78
Query: 106 RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 148
A+ +P ND A S G A+++A + A
Sbjct: 79 DD-IPALGILPLGTANDFA---TSVGIPEALDKALKLAIAGDA 117
>d1i5pa1 b.18.1.3 (A:473-633) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId:
29339]}
Length = 161
Score = 27.6 bits (61), Expect = 1.6
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 288 NIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPI 323
NIY + +H A +TGFT+ P+++
Sbjct: 1 NIYAANENGTMIHLAPEDYTGFTISPIHATQVNNQT 36
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 224
Score = 27.5 bits (60), Expect = 2.6
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 199 LFEFIERQLKENGHMVIVVAEGAGQEFV 226
L QLKE G M++ + G Q+
Sbjct: 147 LLCKPYEQLKEGGIMILPIGVGRVQKLY 174
>d1cvra2 c.17.1.2 (A:1-350) Gingipain R (RgpB), N-terminal domain
{Porphyromonas gingivalis [TaxId: 837]}
Length = 350
Score = 25.9 bits (56), Expect = 8.5
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 29/107 (27%)
Query: 205 RQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQ- 263
+ KENG M+++VA+ ++ VD K+ G L + + + I T
Sbjct: 4 VEEKENGRMIVIVAK----KYEGDIKDFVDWKNQRG----LRTEVKVAEDIASPVTANAI 55
Query: 264 KMMINMKY-----------------IDPTYMIRAIPSNGSDNIYCTL 293
+ + +Y P + I SD +Y +
Sbjct: 56 QQFVKQEYEKEGNDLTYVLLVGDHKDIPAKITPGIK---SDQVYGQI 99
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory
protein PrpR {Escherichia coli [TaxId: 562]}
Length = 186
Score = 25.4 bits (56), Expect = 9.5
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 122 DIAVIDKSFGFDTAVEEAQRAINAAHVEV 150
+I I GF+ AV ++ + +
Sbjct: 28 NITPIQL--GFEKAVTYIRKKLANERCDA 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0384 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,388,744
Number of extensions: 65239
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 14
Length of query: 381
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,213,086
Effective search space: 356647284
Effective search space used: 356647284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.5 bits)